BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2550132.2.1
(603 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN131929.1|CN131929 OX1_3_C10.b1_A002 Oxidatively-stress... 412 e-113
gb|CW090470.1|CW090470 104_436_10949298_114_32605_073 Sorgh... 396 e-109
gb|BE362145.1|BE362145 DG1_84_D03.g1_A002 Dark Grown 1 (DG1... 64 2e-008
gb|CL177395.1|CL177395 104_384_10893805_116_31916_253 Sorgh... 62 6e-008
gb|CL177396.1|CL177396 104_384_10893805_148_31915_253 Sorgh... 62 6e-008
gb|CW276375.1|CW276375 104_750_11405455_116_35396_032 Sorgh... 62 6e-008
gb|CW282858.1|CW282858 104_759_11408938_148_35474_045 Sorgh... 62 6e-008
gb|CW430773.1|CW430773 fsbb001f144k09f0 Sorghum methylation... 62 6e-008
gb|CW137973.1|CW137973 104_525_11119958_148_34875_055 Sorgh... 52 6e-005
gb|CW380051.1|CW380051 fsbb001f059k11k0 Sorghum methylation... 52 6e-005
gb|CW405552.1|CW405552 fsbb001f098c18k0 Sorghum methylation... 52 6e-005
gb|CW380050.1|CW380050 fsbb001f059k11f0 Sorghum methylation... 48 0.001
gb|CL188506.1|CL188506 104_405_10901647_114_32452_032 Sorgh... 40 0.23
gb|CW040137.1|CW040137 104_273_10505918_114_30266 Sorghum m... 40 0.23
gb|CW175474.1|CW175474 104_588_11157958_148_36576_095 Sorgh... 40 0.23
gb|CW178491.1|CW178491 104_592_11159592_148_36619_092 Sorgh... 40 0.23
gb|CW224226.1|CW224226 104_660_11203336_116_37447_058 Sorgh... 40 0.23
gb|CW286570.1|CW286570 104_764_11410949_116_35513_025 Sorgh... 40 0.23
gb|BE356223.1|BE356223 DG1_123_E04.g1_A002 Dark Grown 1 (DG... 40 0.23
gb|BE360262.1|BE360262 DG1_62_B04.b1_A002 Dark Grown 1 (DG1... 40 0.23
gb|BG052626.1|BG052626 RHIZ2_27_C02.g1_A003 Rhizome2 (RHIZ2... 40 0.23
gb|BG356773.1|BG356773 OV2_9_G07.g1_A002 Ovary 2 (OV2) Sorg... 40 0.23
gb|BI098006.1|BI098006 IP1_30_H05.g1_A002 Immature pannicle... 40 0.23
gb|CB926564.1|CB926564 ABA1_2_A01.b1_A012 Abscisic acid-tre... 40 0.23
gb|CD207558.1|CD207558 HS1_33_F04.b1_A012 Heat-shocked seed... 40 0.23
gb|CD231584.1|CD231584 SS1_22_D07.b1_A012 Salt-stressed see... 40 0.23
gb|CF761302.1|CF761302 DSAF1_73_E08.b1_A011 Drought-stresse... 40 0.23
gb|CN124342.1|CN124342 RHOH1_4_D05.b1_A002 Acid- and alkali... 40 0.23
gb|CN127948.1|CN127948 RHOH1_26_C08.b1_A002 Acid- and alkal... 40 0.23
gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, pu... 40 0.23
>gb|CN131929.1|CN131929 OX1_3_C10.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_3_C10_A002 3', mRNA sequence
Length = 572
Score = 412 bits (208), Expect = e-113
Identities = 265/284 (93%)
Strand = Plus / Minus
Query: 98 atccagggcgaggcgcggagcggcgtgacgacggacttgacggccaggtacttgtcgagc 157
||||| |||||||| || ||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 284 atccatggcgaggcacgcagcggggtgacgacggacttgatggccaggtacttgtcgagc 225
Query: 158 gcgtgcatgccctcgtccttgccgaagccgctcatcttgcggccgccgaaggggcagtcg 217
||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 224 gcgtgcatgccttcgtccttgccgaacccgctcatcttgcgtccgccgaaggggcagtcg 165
Query: 218 ctgcccatggcgaagtagcagttcacccacaccaccccggcgcgcaccgacctcaccacc 277
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 164 ctgcccatggcgaagtagcagttgacccacaccaccccggcgcgcaccgacctcaccacc 105
Query: 278 cggttcgccacgtccaggtcccgcgtcaccacccccgcccccagcccgtaccgcgtgtcg 337
|||||||||||||||| ||| |||||||||||||| || |||||||||||||| |||||
Sbjct: 104 cggttcgccacgtccacgtctcgcgtcaccaccccggcgcccagcccgtaccgactgtcg 45
Query: 338 ttcgccctcgcgatcgcctcctccaccggcttgaacttcatcag 381
||||||||| ||||||||||||||||| ||||||||| |||||
Sbjct: 44 ttcgccctccagatcgcctcctccaccgtcttgaacttgatcag 1
>gb|CW090470.1|CW090470 104_436_10949298_114_32605_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10949298, DNA
sequence
Length = 762
Score = 396 bits (200), Expect = e-109
Identities = 251/268 (93%)
Strand = Plus / Minus
Query: 98 atccagggcgaggcgcggagcggcgtgacgacggacttgacggccaggtacttgtcgagc 157
||||| |||||||| || ||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 459 atccatggcgaggcacgcagcggggtgacgacggacttgatggccaggtacttgtcgagc 400
Query: 158 gcgtgcatgccctcgtccttgccgaagccgctcatcttgcggccgccgaaggggcagtcg 217
||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 399 gcgtgcatgccttcgtccttgccgaacccgctcatcttgcgtccgccgaaggggcagtcg 340
Query: 218 ctgcccatggcgaagtagcagttcacccacaccaccccggcgcgcaccgacctcaccacc 277
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 339 ctgcccatggcgaagtagcagttgacccacaccaccccggcgcgcaccgacctcaccacc 280
Query: 278 cggttcgccacgtccaggtcccgcgtcaccacccccgcccccagcccgtaccgcgtgtcg 337
|||||||||||||||| ||| |||||||||||||| || |||||||||||||| |||||
Sbjct: 279 cggttcgccacgtccacgtctcgcgtcaccaccccggcgcccagcccgtaccgactgtcg 220
Query: 338 ttcgccctcgcgatcgcctcctccaccg 365
||||||||| |||||||||||||||||
Sbjct: 219 ttcgccctccagatcgcctcctccaccg 192
Score = 75.8 bits (38), Expect = 4e-012
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 367 cttgaacttcatcaggcacatgacgggtccgaagatctcctccttcgctatgatcatg 424
||||||||| |||||||||||||| || ||||||||||||||||| ||||||| ||||
Sbjct: 58 cttgaacttgatcaggcacatgacagggccgaagatctcctccttggctatgaccatg 1
>gb|BE362145.1|BE362145 DG1_84_D03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 703
Score = 63.9 bits (32), Expect = 2e-008
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 348 cgatcgcctcctccaccggcttgaacttcatcaggcacatgacgggtccgaagatctcct 407
||||| |||| || |||| | |||||||||| ||| |||||||||| ||||||||||| |
Sbjct: 201 cgatcacctcatcaaccgacctgaacttcatgagggacatgacggggccgaagatctctt 142
Query: 408 ccttcgctatgatcatgtcctccttgac 435
||| ||| || ||||||||||| ||||
Sbjct: 141 cctgcgcgatcttcatgtcctccgtgac 114
Score = 52.0 bits (26), Expect = 6e-005
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 226 ggcgaagtagcagttcacccacaccaccccggcgcgcaccgacctcaccacccggttcgc 285
|||| ||||||||||||||||||| |||||||||||||||| | ||||||||| ||
Sbjct: 323 ggcgtagtagcagttcacccacacggtgccggcgcgcaccgaccgcgacacccggttggc 264
Query: 286 cacgtccagg 295
| |||||||
Sbjct: 263 gatgtccagg 254
>gb|CL177395.1|CL177395 104_384_10893805_116_31916_253 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893805, DNA
sequence
Length = 731
Score = 61.9 bits (31), Expect = 6e-008
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 369 tgaacttcatcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtcct 428
|||||||||| ||| |||||||||| ||||||||||| |||| ||| || |||||||||
Sbjct: 526 tgaacttcatgagggacatgacggggccgaagatctcttcctgcgcgatcttcatgtcct 585
Query: 429 cct 431
|||
Sbjct: 586 cct 588
Score = 52.0 bits (26), Expect = 6e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 226 ggcgaagtagcagttcacccacaccaccccggcgcgcaccgacctcaccacccggttcgc 285
|||| ||||||||||||||||||| |||||||||||||||| | ||||||||| ||
Sbjct: 259 ggcgtagtagcagttcacccacacggtgccggcgcgcaccgaccgcgacacccggttggc 318
Query: 286 cacgtccagg 295
| |||||||
Sbjct: 319 gatgtccagg 328
>gb|CL177396.1|CL177396 104_384_10893805_148_31915_253 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893805, DNA
sequence
Length = 743
Score = 61.9 bits (31), Expect = 6e-008
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 369 tgaacttcatcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtcct 428
|||||||||| ||| |||||||||| ||||||||||| |||| ||| || |||||||||
Sbjct: 334 tgaacttcatgagggacatgacggggccgaagatctcttcctgcgcgatcttcatgtcct 275
Query: 429 cct 431
|||
Sbjct: 274 cct 272
Score = 52.0 bits (26), Expect = 6e-005
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 226 ggcgaagtagcagttcacccacaccaccccggcgcgcaccgacctcaccacccggttcgc 285
|||| ||||||||||||||||||| |||||||||||||||| | ||||||||| ||
Sbjct: 601 ggcgtagtagcagttcacccacacggtgccggcgcgcaccgaccgcgacacccggttggc 542
Query: 286 cacgtccagg 295
| |||||||
Sbjct: 541 gatgtccagg 532
>gb|CW276375.1|CW276375 104_750_11405455_116_35396_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405455, DNA
sequence
Length = 691
Score = 61.9 bits (31), Expect = 6e-008
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 369 tgaacttcatcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtcct 428
|||||||||| ||| |||||||||| ||||||||||| |||| ||| || |||||||||
Sbjct: 118 tgaacttcatgagggacatgacggggccgaagatctcttcctgcgcgatcttcatgtcct 59
Query: 429 cct 431
|||
Sbjct: 58 cct 56
Score = 52.0 bits (26), Expect = 6e-005
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 226 ggcgaagtagcagttcacccacaccaccccggcgcgcaccgacctcaccacccggttcgc 285
|||| ||||||||||||||||||| |||||||||||||||| | ||||||||| ||
Sbjct: 385 ggcgtagtagcagttcacccacacggtgccggcgcgcaccgaccgcgacacccggttggc 326
Query: 286 cacgtccagg 295
| |||||||
Sbjct: 325 gatgtccagg 316
>gb|CW282858.1|CW282858 104_759_11408938_148_35474_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408938, DNA
sequence
Length = 718
Score = 61.9 bits (31), Expect = 6e-008
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 369 tgaacttcatcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtcct 428
|||||||||| ||| |||||||||| ||||||||||| |||| ||| || |||||||||
Sbjct: 145 tgaacttcatgagggacatgacggggccgaagatctcttcctgcgcgatcttcatgtcct 86
Query: 429 cct 431
|||
Sbjct: 85 cct 83
Score = 52.0 bits (26), Expect = 6e-005
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 226 ggcgaagtagcagttcacccacaccaccccggcgcgcaccgacctcaccacccggttcgc 285
|||| ||||||||||||||||||| |||||||||||||||| | ||||||||| ||
Sbjct: 412 ggcgtagtagcagttcacccacacggtgccggcgcgcaccgaccgcgacacccggttggc 353
Query: 286 cacgtccagg 295
| |||||||
Sbjct: 352 gatgtccagg 343
>gb|CW430773.1|CW430773 fsbb001f144k09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f144k09, DNA
sequence
Length = 690
Score = 61.9 bits (31), Expect = 6e-008
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 369 tgaacttcatcaggcacatgacgggtccgaagatctcctccttcgctatgatcatgtcct 428
|||||||||| ||| |||||||||| ||||||||||| |||| ||| || |||||||||
Sbjct: 400 tgaacttcatgagggacatgacggggccgaagatctcttcctgcgcgatcttcatgtcct 341
Query: 429 cct 431
|||
Sbjct: 340 cct 338
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 226 ggcgaagtagcagttcacccacaccaccccggcgcgcaccgacc 269
|||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 668 ggcgtagtagcagttcacccacacggtgccggcgcgcaccgacc 625
>gb|CW137973.1|CW137973 104_525_11119958_148_34875_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11119958, DNA
sequence
Length = 593
Score = 52.0 bits (26), Expect = 6e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 226 ggcgaagtagcagttcacccacaccaccccggcgcgcaccgacctcaccacccggttcgc 285
|||| ||||||||||||||||||| |||||||||||||||| | ||||||||| ||
Sbjct: 436 ggcgtagtagcagttcacccacacggtgccggcgcgcaccgaccgcgacacccggttggc 495
Query: 286 cacgtccagg 295
| |||||||
Sbjct: 496 gatgtccagg 505
>gb|CW380051.1|CW380051 fsbb001f059k11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f059k11, DNA
sequence
Length = 723
Score = 52.0 bits (26), Expect = 6e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 226 ggcgaagtagcagttcacccacaccaccccggcgcgcaccgacctcaccacccggttcgc 285
|||| ||||||||||||||||||| |||||||||||||||| | ||||||||| ||
Sbjct: 584 ggcgtagtagcagttcacccacacggtgccggcgcgcaccgaccgcgacacccggttggc 643
Query: 286 cacgtccagg 295
| |||||||
Sbjct: 644 gatgtccagg 653
>gb|CW405552.1|CW405552 fsbb001f098c18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f098c18, DNA
sequence
Length = 759
Score = 52.0 bits (26), Expect = 6e-005
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 226 ggcgaagtagcagttcacccacaccaccccggcgcgcaccgacctcaccacccggttcgc 285
|||| ||||||||||||||||||| |||||||||||||||| | ||||||||| ||
Sbjct: 244 ggcgtagtagcagttcacccacacggtgccggcgcgcaccgaccgcgacacccggttggc 185
Query: 286 cacgtccagg 295
| |||||||
Sbjct: 184 gatgtccagg 175
>gb|CW380050.1|CW380050 fsbb001f059k11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f059k11, DNA
sequence
Length = 742
Score = 48.1 bits (24), Expect = 0.001
Identities = 55/64 (85%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 369 tgaacttcatcaggcacatgacgggt-ccgaagatctcctccttcgctatgatcatgtcc 427
|||||||||| ||| |||||||||| ||||||||||| |||| ||| || ||||||||
Sbjct: 659 tgaacttcatgagggacatgacgggggccgaagatctcttcctgcgcgatcttcatgtcc 600
Query: 428 tcct 431
||||
Sbjct: 599 tcct 596
>gb|CL188506.1|CL188506 104_405_10901647_114_32452_032 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901647, DNA
sequence
Length = 299
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 346 cgcgatcgcctcctccaccg 365
||||||||||||||||||||
Sbjct: 208 cgcgatcgcctcctccaccg 227
>gb|CW040137.1|CW040137 104_273_10505918_114_30266 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505918, DNA
sequence
Length = 546
Score = 40.1 bits (20), Expect = 0.23
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 145 gtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||| || || |||| ||||||| ||||||||| || ||||||||||||
Sbjct: 99 gtacttctccagggcgtccatgcccatgtccttgccaaatccgctcatcttg 150
>gb|CW175474.1|CW175474 104_588_11157958_148_36576_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11157958, DNA
sequence
Length = 699
Score = 40.1 bits (20), Expect = 0.23
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 577 gggccctggtcggcgctagggtcg 600
|||| |||||||||||||||||||
Sbjct: 192 gggcgctggtcggcgctagggtcg 169
>gb|CW178491.1|CW178491 104_592_11159592_148_36619_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159592, DNA
sequence
Length = 522
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 346 cgcgatcgcctcctccaccg 365
||||||||||||||||||||
Sbjct: 426 cgcgatcgcctcctccaccg 445
>gb|CW224226.1|CW224226 104_660_11203336_116_37447_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11203336, DNA
sequence
Length = 662
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 348 cgatcgcctcctccaccggc 367
||||||||||||||||||||
Sbjct: 309 cgatcgcctcctccaccggc 328
>gb|CW286570.1|CW286570 104_764_11410949_116_35513_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410949, DNA
sequence
Length = 597
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 348 cgatcgcctcctccaccggc 367
||||||||||||||||||||
Sbjct: 192 cgatcgcctcctccaccggc 211
>gb|BE356223.1|BE356223 DG1_123_E04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 432
Score = 40.1 bits (20), Expect = 0.23
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 145 gtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||| || || |||| ||||||| ||||||||| || ||||||||||||
Sbjct: 305 gtacttctccagggcgtccatgcccatgtccttgccaaatccgctcatcttg 254
>gb|BE360262.1|BE360262 DG1_62_B04.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 587
Score = 40.1 bits (20), Expect = 0.23
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 145 gtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||| || || |||| ||||||| ||||||||| || ||||||||||||
Sbjct: 66 gtacttctccagggcgtccatgcccatgtccttgccaaatccgctcatcttg 117
>gb|BG052626.1|BG052626 RHIZ2_27_C02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 416
Score = 40.1 bits (20), Expect = 0.23
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 145 gtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||| || || |||| ||||||| ||||||||| || ||||||||||||
Sbjct: 182 gtacttctccagggcgtccatgcccatgtccttgccaaatccgctcatcttg 131
>gb|BG356773.1|BG356773 OV2_9_G07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 656
Score = 40.1 bits (20), Expect = 0.23
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 145 gtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||| || || |||| ||||||| ||||||||| || ||||||||||||
Sbjct: 427 gtacttctccagggcgtccatgcccatgtccttgccaaatccgctcatcttg 376
>gb|BI098006.1|BI098006 IP1_30_H05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 496
Score = 40.1 bits (20), Expect = 0.23
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 145 gtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||| || || |||| ||||||| ||||||||| || ||||||||||||
Sbjct: 245 gtacttctccagggcgtccatgcccatgtccttgccaaatccgctcatcttg 194
>gb|CB926564.1|CB926564 ABA1_2_A01.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_2_A01_A012 3', mRNA sequence
Length = 645
Score = 40.1 bits (20), Expect = 0.23
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 145 gtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||| || || |||| ||||||| ||||||||| || ||||||||||||
Sbjct: 405 gtacttctccagggcgtccatgcccatgtccttgccaaatccgctcatcttg 354
>gb|CD207558.1|CD207558 HS1_33_F04.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_33_F04_A012 3', mRNA sequence
Length = 603
Score = 40.1 bits (20), Expect = 0.23
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 145 gtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||| || || |||| ||||||| ||||||||| || ||||||||||||
Sbjct: 527 gtacttctccagggcgtccatgcccatgtccttgccaaatccgctcatcttg 476
>gb|CD231584.1|CD231584 SS1_22_D07.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_22_D07_A012 3', mRNA sequence
Length = 588
Score = 40.1 bits (20), Expect = 0.23
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 145 gtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||| || || |||| ||||||| ||||||||| || ||||||||||||
Sbjct: 514 gtacttctccagggcgtccatgcccatgtccttgccaaatccgctcatcttg 463
>gb|CF761302.1|CF761302 DSAF1_73_E08.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_73_E08_A011 5', mRNA sequence
Length = 420
Score = 40.1 bits (20), Expect = 0.23
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 145 gtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||| || || |||| ||||||| ||||||||| || ||||||||||||
Sbjct: 414 gtacttctccagggcgtccatgcccatgtccttgccaaatccgctcatcttg 363
>gb|CN124342.1|CN124342 RHOH1_4_D05.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_4_D05_A002 3', mRNA sequence
Length = 661
Score = 40.1 bits (20), Expect = 0.23
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 145 gtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||| || || |||| ||||||| ||||||||| || ||||||||||||
Sbjct: 587 gtacttctccagggcgtccatgcccatgtccttgccaaatccgctcatcttg 536
>gb|CN127948.1|CN127948 RHOH1_26_C08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_26_C08_A002 3', mRNA sequence
Length = 736
Score = 40.1 bits (20), Expect = 0.23
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 145 gtacttgtcgagcgcgtgcatgccctcgtccttgccgaagccgctcatcttg 196
|||||| || || |||| ||||||| ||||||||| || ||||||||||||
Sbjct: 487 gtacttctccagggcgtccatgcccatgtccttgccaaatccgctcatcttg 436
>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier,
hypothetical protein, putative NAM protein, putative
cis-zeatin O-glucosyltransferases, putative small nuclear
ribonucleoprotein, putative cis-zeatin
O-glucosyltransferase, putative glutathione peroxidase,
putative copper-exporting ATPases, putative
serine/threonine dehydratase, and putative actin
depolymerizing factor genes, complete cds; and hypothetical
protein gene, partial cds
Length = 157237
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 346 cgcgatcgcctcctccaccg 365
||||||||||||||||||||
Sbjct: 156354 cgcgatcgcctcctccaccg 156335
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 181,233
Number of Sequences: 832831
Number of extensions: 181233
Number of successful extensions: 54598
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 54496
Number of HSP's gapped (non-prelim): 93
length of query: 603
length of database: 491,359,669
effective HSP length: 19
effective length of query: 584
effective length of database: 475,535,880
effective search space: 277712953920
effective search space used: 277712953920
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)