BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2542512.2.1
(834 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW442457.1|CW442457 fsbb001f162c05k0 Sorghum methylation... 505 e-141
gb|BE357860.1|BE357860 DG1_22_C12.g1_A002 Dark Grown 1 (DG1... 496 e-138
gb|CW156276.1|CW156276 104_559_11146598_116_36378_061 Sorgh... 484 e-135
gb|BE355191.1|BE355191 DG1_10_D02.g1_A002 Dark Grown 1 (DG1... 476 e-132
gb|BE362029.1|BE362029 DG1_83_E01.g1_A002 Dark Grown 1 (DG1... 458 e-127
gb|CW156277.1|CW156277 104_559_11146598_148_36377_061 Sorgh... 436 e-120
gb|CX613643.1|CX613643 GABR1_9_H05.b1_A002 GA- or brassinol... 402 e-110
gb|CW192718.1|CW192718 104_615_11179178_148_36775_011 Sorgh... 400 e-110
gb|BE360028.1|BE360028 DG1_60_C08.g2_A002 Dark Grown 1 (DG1... 394 e-108
gb|BE363286.1|BE363286 WS1_61_D09.g1_A002 Water-stressed 1 ... 394 e-108
gb|CD226055.1|CD226055 CCC1_43_F04.b1_A007 Callus culture/c... 394 e-108
gb|CW193504.1|CW193504 104_616_11179600_148_36779_058 Sorgh... 381 e-104
gb|BE357452.1|BE357452 DG1_15_A08.b2_A002 Dark Grown 1 (DG1... 379 e-103
gb|CX610228.1|CX610228 ANR1_17_H06.b1_A002 Anaerobic roots ... 367 1e-099
gb|BE363200.1|BE363200 WS1_61_D09.b1_A002 Water-stressed 1 ... 339 2e-091
gb|CD464006.1|CD464006 ETH1_48_F01.b1_A002 Ethylene-treated... 319 2e-085
gb|CW393838.1|CW393838 fsbb001f081b07f0 Sorghum methylation... 283 1e-074
gb|AW922538.1|AW922538 DG1_20_D10.g1_A002 Dark Grown 1 (DG1... 270 2e-070
gb|AW922289.1|AW922289 DG1_17_H09.g1_A002 Dark Grown 1 (DG1... 218 6e-055
gb|CW193503.1|CW193503 104_616_11179600_116_36780_058 Sorgh... 202 4e-050
gb|CD222314.1|CD222314 CCC1_21_E10.b1_A007 Callus culture/c... 196 2e-048
gb|BG464902.1|BG464902 EM1_35_G06.g1_A002 Embryo 1 (EM1) So... 190 1e-046
gb|BG464759.1|BG464759 EM1_33_G05.g1_A002 Embryo 1 (EM1) So... 180 1e-043
gb|BG464757.1|BG464757 EM1_33_G01.g1_A002 Embryo 1 (EM1) So... 174 8e-042
gb|CW239661.1|CW239661 104_698_11217778_116_37423_047 Sorgh... 168 5e-040
gb|CW253790.1|CW253790 104_717_11225292_116_35111_038 Sorgh... 145 8e-033
gb|CW263276.1|CW263276 104_731_11230595_116_35213_042 Sorgh... 123 3e-026
gb|BE125962.1|BE125962 DG1_60_C08.b1_A002 Dark Grown 1 (DG1... 117 2e-024
gb|CW205469.1|CW205469 104_633_11187083_116_36925_034 Sorgh... 113 3e-023
gb|CW070836.1|CW070836 104_323_10591274_116_30545 Sorghum m... 103 3e-020
gb|CW070950.1|CW070950 104_323_10591324_116_30439 Sorghum m... 103 3e-020
gb|CW205470.1|CW205470 104_633_11187083_148_36926_034 Sorgh... 103 3e-020
gb|CW256586.1|CW256586 104_721_11226871_116_35138_020 Sorgh... 101 1e-019
gb|CF430593.1|CF430593 NIT1_3_A05.b1_A002 Nitrogen-deficien... 101 1e-019
gb|CW051043.1|CW051043 104_291_10515016_115_30196 Sorghum m... 94 2e-017
gb|CW428466.1|CW428466 fsbb001f141c22k0 Sorghum methylation... 92 1e-016
gb|CW485737.1|CW485737 fsbb001f248k03f0 Sorghum methylation... 92 1e-016
gb|CW316826.1|CW316826 104_808_11473096_148_35858_058 Sorgh... 86 6e-015
gb|CW393839.1|CW393839 fsbb001f081b07k0 Sorghum methylation... 86 6e-015
gb|BZ779926.1|BZ779926 ii35e07.g1 WGS-SbicolorF (DH5a methy... 84 2e-014
gb|CW188052.1|CW188052 104_607_11172812_116_36728_070 Sorgh... 84 2e-014
gb|AW679544.1|AW679544 WS1_29_D01.g1_A002 Water-stressed 1 ... 84 2e-014
gb|BG933110.1|BG933110 WS1_29_D01.b1_A002 Water-stressed 1 ... 84 2e-014
gb|CB924446.1|CB924446 ABA1_21_F08.b1_A012 Abscisic acid-tr... 84 2e-014
gb|CD205908.1|CD205908 HS1_19_B08.b1_A012 Heat-shocked seed... 84 2e-014
gb|CD212860.1|CD212860 HS1_17_H04.b1_A012 Heat-shocked seed... 84 2e-014
gb|CD427023.1|CD427023 SA1_17_C08.b1_A002 Salicylic acid-tr... 84 2e-014
gb|CF770824.1|CF770824 DSBF1_10_B04.g1_A010 Drought-stresse... 84 2e-014
gb|CN147616.1|CN147616 WOUND1_50_G10.g1_A002 Wounded leaves... 84 2e-014
gb|CW256587.1|CW256587 104_721_11226871_148_35142_020 Sorgh... 72 9e-011
gb|CW355674.1|CW355674 fsbb001f020g14k0 Sorghum methylation... 72 9e-011
gb|CW034873.1|CW034873 104_265_10502820_114_30378 Sorghum m... 70 4e-010
gb|CW253791.1|CW253791 104_717_11225292_148_35107_038 Sorgh... 70 4e-010
gb|CW111258.1|CW111258 104_484_11104208_116_34532_024 Sorgh... 64 2e-008
gb|CL188546.1|CL188546 104_405_10901677_116_32454_061 Sorgh... 62 9e-008
gb|CW146603.1|CW146603 104_539_11139081_116_34988_037 Sorgh... 62 9e-008
gb|CW495205.1|CW495205 fsbb001f286n22k0 Sorghum methylation... 62 9e-008
gb|BE360127.1|BE360127 DG1_61_D01.g1_A002 Dark Grown 1 (DG1... 62 9e-008
gb|BE360153.1|BE360153 DG1_61_D01.g2_A002 Dark Grown 1 (DG1... 62 9e-008
gb|CD223291.1|CD223291 CCC1_27_A10.b1_A007 Callus culture/c... 62 9e-008
gb|CW044186.1|CW044186 104_280_10508807_115_30242 Sorghum m... 60 3e-007
gb|CW272418.1|CW272418 104_744_11403415_116_35346_020 Sorgh... 60 3e-007
gb|CW272419.1|CW272419 104_744_11403415_116_36221_020 Sorgh... 60 3e-007
gb|CW448048.1|CW448048 fsbb001f181h13k0 Sorghum methylation... 60 3e-007
gb|CW493243.1|CW493243 fsbb001f283o16k0 Sorghum methylation... 60 3e-007
gb|CX622160.1|CX622160 GABR1_62_H03.b2_A002 GA- or brassino... 60 3e-007
gb|CW117635.1|CW117635 104_493_11107760_148_34613_020 Sorgh... 58 1e-006
gb|CW054377.1|CW054377 104_295_10516493_115_30176 Sorghum m... 56 5e-006
gb|CW132069.1|CW132069 104_515_11116013_148_34794_027 Sorgh... 56 5e-006
gb|CW255081.1|CW255081 104_719_11226032_116_35125_024 Sorgh... 56 5e-006
gb|CW264501.1|CW264501 104_733_11231332_116_35254_010 Sorgh... 56 5e-006
gb|CW485262.1|CW485262 fsbb001f247o06f0 Sorghum methylation... 56 5e-006
gb|CW491815.1|CW491815 fsbb001f281n13k0 Sorghum methylation... 56 5e-006
gb|CW492912.1|CW492912 fsbb001f283h01k0 Sorghum methylation... 56 5e-006
gb|CW500161.1|CW500161 fsbb001f295f07k0 Sorghum methylation... 56 5e-006
gb|CW500198.1|CW500198 fsbb001f295g07k0 Sorghum methylation... 56 5e-006
gb|CW213799.1|CW213799 104_645_11191755_116_37038_008 Sorgh... 54 2e-005
gb|CW239662.1|CW239662 104_698_11217778_148_37424_047 Sorgh... 54 2e-005
gb|CW458248.1|CW458248 fsbb001f204h03k0 Sorghum methylation... 54 2e-005
gb|BZ336357.1|BZ336357 hz33e08.g1 WGS-SbicolorF (JM107 adap... 52 8e-005
gb|CD222278.1|CD222278 CCC1_21_H02.b1_A007 Callus culture/c... 52 8e-005
gb|CD424025.1|CD424025 SA1_3_C01.b1_A002 Salicylic acid-tre... 52 8e-005
gb|BZ331488.1|BZ331488 hw08h04.b1 WGS-SbicolorF (JM107 adap... 50 3e-004
gb|CL187901.1|CL187901 104_403_10901215_116_32465_018 Sorgh... 50 3e-004
gb|CW158071.1|CW158071 104_561_11147859_148_36388_004 Sorgh... 50 3e-004
gb|CW192717.1|CW192717 104_615_11179178_116_36776_011 Sorgh... 50 3e-004
gb|CW285908.1|CW285908 104_763_11410595_116_35511_042 Sorgh... 50 3e-004
gb|CW285909.1|CW285909 104_763_11410595_148_35507_042 Sorgh... 50 3e-004
gb|CW385602.1|CW385602 fsbb001f069c08k0 Sorghum methylation... 50 3e-004
gb|CW485263.1|CW485263 fsbb001f247o06k0 Sorghum methylation... 50 3e-004
gb|CD424723.1|CD424723 SA1_7_D01.b1_A002 Salicylic acid-tre... 48 0.001
gb|CL169463.1|CL169463 104_368_10812650_148_31808_122 Sorgh... 46 0.005
gb|CL171620.1|CL171620 104_373_10889555_148_31776_227 Sorgh... 46 0.005
gb|CW058223.1|CW058223 104_300_10518620_5_30082 Sorghum met... 46 0.005
gb|CW217293.1|CW217293 104_650_11195580_116_37132_040 Sorgh... 46 0.005
gb|CW236166.1|CW236166 104_692_11215470_116_37502_031 Sorgh... 46 0.005
gb|CW391370.1|CW391370 fsbb001f077h16f0 Sorghum methylation... 46 0.005
gb|CW397751.1|CW397751 fsbb001f086o08k0 Sorghum methylation... 46 0.005
gb|CW441697.1|CW441697 fsbb001f160p13k0 Sorghum methylation... 46 0.005
gb|CW460451.1|CW460451 fsbb001f207k13f0 Sorghum methylation... 46 0.005
gb|CW485738.1|CW485738 fsbb001f248k03k0 Sorghum methylation... 46 0.005
gb|BF705056.1|BF705056 RHIZ2_1_H06.g1_A003 Rhizome2 (RHIZ2)... 46 0.005
gb|BG053297.1|BG053297 RHIZ2_25_F08.b1_A003 Rhizome2 (RHIZ2... 46 0.005
gb|BG101809.1|BG101809 RHIZ2_22_F11.g1_A003 Rhizome2 (RHIZ2... 46 0.005
gb|BG102350.1|BG102350 RHIZ2_22_F11.b1_A003 Rhizome2 (RHIZ2... 46 0.005
gb|BG103168.1|BG103168 RHIZ2_19_A04.g1_A003 Rhizome2 (RHIZ2... 46 0.005
gb|CF430086.1|CF430086 PH1_26_E06.b1_A002 Phosphorous-defic... 46 0.005
gb|AF029857.1|AF029857 Sorghum bicolor cytochrome P450 CYP9... 46 0.005
gb|CL180530.1|CL180530 104_390_10896086_148_31929_230 Sorgh... 44 0.020
gb|CW142906.1|CW142906 104_534_11137118_148_34945_055 Sorgh... 44 0.020
gb|CW241748.1|CW241748 104_701_11218942_148_37557_095 Sorgh... 44 0.020
gb|CW300220.1|CW300220 104_783_11463536_116_36252_024 Sorgh... 44 0.020
gb|CW423885.1|CW423885 fsbb001f133o22k0 Sorghum methylation... 44 0.020
gb|BE362032.1|BE362032 DG1_83_D10.g1_A002 Dark Grown 1 (DG1... 44 0.020
gb|CD212856.1|CD212856 HS1_17_F10.b1_A012 Heat-shocked seed... 44 0.020
gb|CD233014.1|CD233014 SS1_11_A04.b1_A012 Salt-stressed see... 44 0.020
gb|CX615988.1|CX615988 GABR1_25_E02.b1_A002 GA- or brassino... 44 0.020
gb|CL161359.1|CL161359 104_352_10805664_114_31826_336 Sorgh... 42 0.081
gb|CW032003.1|CW032003 104_260_10501126_114_30365 Sorghum m... 42 0.081
gb|CW032853.1|CW032853 104_262_10501627_115_30362 Sorghum m... 42 0.081
gb|CW043503.1|CW043503 104_279_10508404_114_30276 Sorghum m... 42 0.081
gb|CW051802.1|CW051802 104_292_10515367_114_30286 Sorghum m... 42 0.081
gb|CW072175.1|CW072175 104_325_10592114_114_30536 Sorghum m... 42 0.081
gb|CW118551.1|CW118551 104_495_11108272_116_34625_062 Sorgh... 42 0.081
gb|CW159482.1|CW159482 104_565_11149381_116_36407_053 Sorgh... 42 0.081
gb|CW336278.1|CW336278 104_835_11483503_116_36096_024 Sorgh... 42 0.081
gb|CW344414.1|CW344414 104_847_11487942_116_36200_029 Sorgh... 42 0.081
gb|CW372570.1|CW372570 fsbb001f048i11k0 Sorghum methylation... 42 0.081
gb|CW394976.1|CW394976 fsbb001f082n03k0 Sorghum methylation... 42 0.081
gb|CW396920.1|CW396920 fsbb001f085j10k0 Sorghum methylation... 42 0.081
gb|CW438573.1|CW438573 fsbb001f156e10f0 Sorghum methylation... 42 0.081
gb|CW492088.1|CW492088 fsbb001f282d15f0 Sorghum methylation... 42 0.081
gb|CW495032.1|CW495032 fsbb001f286j17f0 Sorghum methylation... 42 0.081
gb|CL703376.2|CL703376 SP__Ba0095M14.r SP__Ba Sorghum propi... 42 0.081
gb|BE360532.1|BE360532 DG1_64_F09.b1_A002 Dark Grown 1 (DG1... 42 0.081
gb|CL155512.1|CL155512 104_341_10782192_116_31472_288 Sorgh... 40 0.32
gb|CL164192.1|CL164192 104_358_10807733_116_31815_101 Sorgh... 40 0.32
gb|CL181949.1|CL181949 104_393_10897090_116_31922_082 Sorgh... 40 0.32
gb|CL193520.1|CL193520 104_417_10940988_116_32279_044 Sorgh... 40 0.32
gb|CL194618.1|CL194618 104_419_10941771_114_32294_012 Sorgh... 40 0.32
gb|CL194619.1|CL194619 104_419_10941771_116_32298_012 Sorgh... 40 0.32
gb|CW049373.1|CW049373 104_288_10513988_114_30200 Sorghum m... 40 0.32
gb|CW091292.1|CW091292 104_453_10998465_114_33030_045 Sorgh... 40 0.32
gb|CW091332.1|CW091332 104_453_10998487_116_33032_028 Sorgh... 40 0.32
gb|CW177043.1|CW177043 104_590_11158813_116_36590_059 Sorgh... 40 0.32
gb|CW177194.1|CW177194 104_590_11158892_148_36596_074 Sorgh... 40 0.32
gb|CW201807.1|CW201807 104_627_11184763_116_37109_068 Sorgh... 40 0.32
gb|CW229154.1|CW229154 104_670_11207152_148_37257_058 Sorgh... 40 0.32
gb|CW229763.1|CW229763 104_671_11207486_148_37296_059 Sorgh... 40 0.32
gb|CW230265.1|CW230265 104_671_11207756_116_37270_066 Sorgh... 40 0.32
gb|CW230266.1|CW230266 104_671_11207756_148_37266_066 Sorgh... 40 0.32
gb|CW233821.1|CW233821 104_687_11213650_116_37384_043 Sorgh... 40 0.32
gb|CW259437.1|CW259437 104_725_11228422_116_35183_083 Sorgh... 40 0.32
gb|CW259438.1|CW259438 104_725_11228422_148_35179_083 Sorgh... 40 0.32
gb|CW317710.1|CW317710 104_809_11473558_148_35864_085 Sorgh... 40 0.32
gb|CW345226.1|CW345226 104_848_11488374_116_36208_027 Sorgh... 40 0.32
gb|CW345227.1|CW345227 104_848_11488374_148_36207_027 Sorgh... 40 0.32
gb|CW415242.1|CW415242 fsbb001f115e04f0 Sorghum methylation... 40 0.32
gb|CW433520.1|CW433520 fsbb001f148m07f0 Sorghum methylation... 40 0.32
gb|CW433885.1|CW433885 fsbb001f149f03k0 Sorghum methylation... 40 0.32
gb|CW440150.1|CW440150 fsbb001f158k12f0 Sorghum methylation... 40 0.32
gb|CW461908.1|CW461908 fsbb001f209m16f0 Sorghum methylation... 40 0.32
gb|CW467567.1|CW467567 fsbb001f219f03f0 Sorghum methylation... 40 0.32
gb|CW497581.1|CW497581 fsbb001f290g11k0 Sorghum methylation... 40 0.32
gb|BG556624.1|BG556624 EM1_37_E11.b1_A002 Embryo 1 (EM1) So... 40 0.32
gb|CD205108.1|CD205108 HS1_12_G09.b1_A012 Heat-shocked seed... 40 0.32
gb|CD209121.1|CD209121 HS1_46_E10.b1_A012 Heat-shocked seed... 40 0.32
gb|CD224783.1|CD224783 CCC1_36_H09.b1_A007 Callus culture/c... 40 0.32
gb|CD231858.1|CD231858 SS1_30_G02.b1_A012 Salt-stressed see... 40 0.32
gb|CD233294.1|CD233294 SS1_13_G10.b1_A012 Salt-stressed see... 40 0.32
gb|CD461752.1|CD461752 SA1_35_F10.b1_A002 Salicylic acid-tr... 40 0.32
gb|CF433207.1|CF433207 NIT1_25_G11.g1_A002 Nitrogen-deficie... 40 0.32
gb|CN124545.1|CN124545 RHOH1_5_B04.g1_A002 Acid- and alkali... 40 0.32
gb|CN136721.1|CN136721 OX1_53_A04.b1_A002 Oxidatively-stres... 40 0.32
>gb|CW442457.1|CW442457 fsbb001f162c05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f162c05, DNA
sequence
Length = 554
Score = 505 bits (255), Expect = e-141
Identities = 337/363 (92%), Gaps = 5/363 (1%)
Strand = Plus / Plus
Query: 39 acttgtttacagccggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgc 98
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 68 acttgtttacagccggaacggagacgacgtcgtcgacgatagaatgggccatgtcgctgc 127
Query: 99 tgctgaaccacccggaggcgctgaagaaggccgaggcagagatcgaggcggccgtgggcn 158
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 128 tgctgaatcacccggaggcgctgaagaaggtggaggcagagatcgaggcggccgtgggca 187
Query: 159 gtcccg----cctcatcaccatggacgacgtgccggggctgggctacctgcagtgcgtca 214
||| |||||||||||||||||||||| | |||||| ||||||||||||||||||
Sbjct: 188 cctccggcggcctcatcaccatggacgacgtggccgggctgagctacctgcagtgcgtca 247
Query: 215 tcaacgagacgctgcgcctgtacccggtggccccgctgctgctgccgcacgagtcgacgg 274
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 248 tcagcgagacgctgcgcctgtacccggtggcgccgctgctgctgccgcacgagtcggcgg 307
Query: 275 cggactgcacggtcggcggctacgaagtgccccgcggcacgctgctgttcgtcacacgcg 334
|||||||| | |||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 308 cggactgcgccgtcggcggctacgacgtgccccgcggcacgctgctgttcgtca-acgcg 366
Query: 335 tacgccatccacagggacccggcggcgtgggaggagccggacgagttcaggccggagcgg 394
||||||||||||||||||||||||| ||||||||| || | |||||||||||||||||||
Sbjct: 367 tacgccatccacagggacccggcggtgtgggaggaacccggcgagttcaggccggagcgg 426
Query: 395 ttc 397
|||
Sbjct: 427 ttc 429
Score = 139 bits (70), Expect = 5e-031
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 416 ggccggctgatgctgccgttcgggatgggacggcgcaggtgccccggggagacgctcgct 475
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 469 ggccggctgatgctgccgttcgggatggggcggcgcaggtgccccggggagaccctcgcg 528
Query: 476 ctgcggaccgccggcctcgtgctcgc 501
|||||||||| |||||||||||||||
Sbjct: 529 ctgcggaccgtcggcctcgtgctcgc 554
>gb|BE357860.1|BE357860 DG1_22_C12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 695
Score = 496 bits (250), Expect = e-138
Identities = 458/525 (87%), Gaps = 2/525 (0%)
Strand = Plus / Plus
Query: 116 gcgctgaagaaggccgaggcagagatcgaggcggccgtgggcng-tcccgcctcatcacc 174
|||||||||||||| ||||||||||||| |||| ||||||| ||||| || ||||||
Sbjct: 1 gcgctgaagaaggcacaggcagagatcgacgcggtcgtgggcaactcccggctgatcacc 60
Query: 175 atggacgacgtgccggggctgggctacctgcagtgcgtcatcaacgagacgctgcgcctg 234
|| |||||||| | || ||||||||||||||||||||||||||||| |||||| ||
Sbjct: 61 gcagaagacgtgcctcgcctcggctacctgcagtgcgtcatcaacgagaccctgcgcatg 120
Query: 235 tacccggtggccccgctgctgctgccgcacgagtcgacggcggactgcacggtcggcggc 294
||||| | || |||||||| ||||||||||||||| |||||||||||| ||||||||||
Sbjct: 121 taccctgccgcgccgctgctcctgccgcacgagtcggcggcggactgcaaggtcggcggc 180
Query: 295 tacgaagtgccccgcggcacgctgctgttcgtcacacgcgtacgccatccacagggaccc 354
||||| ||||||||||||||||||||| |||| | |||||||||| ||||||||||||||
Sbjct: 181 tacgacgtgccccgcggcacgctgctgatcgtga-acgcgtacgcgatccacagggaccc 239
Query: 355 ggcggcgtgggaggagccggacgagttcaggccggagcggttccgcgacggcaaggccga 414
|||| ||||||||| |||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 240 cgcggtgtgggaggacccggccgagttcaggccggagcggttcgaggacggcaaggccga 299
Query: 415 gggccggctgatgctgccgttcgggatgggacggcgcaggtgccccggggagacgctcgc 474
||| |||||| || |||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 300 ggggcggctgctgatgccgttcgggatggggcggcgcaagtgccccggggagacgctcgc 359
Query: 475 tctgcggaccgccggcctcgtgctcgccacgctcatccagtgcttccactgggacagaat 534
|||||||||| ||| || ||||||| |||||| ||||||||| || ||||||||||| |
Sbjct: 360 gctgcggaccgtcgggctggtgctcggcacgctgatccagtgcatcgactgggacagagt 419
Query: 535 cgatggcgctgagatcgacatgaccgagagcggcgggctcaccatgccccgggccgtccc 594
||||||| ||||| |||||||||| | | |||||||| ||||||||| ||||||||||
Sbjct: 420 cgatggcctggagattgacatgaccgcgggtggcgggctgaccatgcccagggccgtccc 479
Query: 595 gttggaggccacctgcaagcctcgcgaagccatgcgtcatgttct 639
|||||||||||| ||||||||||| | ||| ||||| |||||||
Sbjct: 480 gttggaggccacgtgcaagcctcgtgcagctatgcgcgatgttct 524
>gb|CW156276.1|CW156276 104_559_11146598_116_36378_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146598, DNA
sequence
Length = 724
Score = 484 bits (244), Expect = e-135
Identities = 473/547 (86%), Gaps = 2/547 (0%)
Strand = Plus / Plus
Query: 73 cacgatagaatgggccatgtcgctgctgctgaaccacccggaggcgctgaagaaggccga 132
||||| |||||||||||||||||| || ||||||||||||||||| || || |||||
Sbjct: 1 cacgacagaatgggccatgtcgcttcttctgaaccacccggaggctctcaataaggcacg 60
Query: 133 ggcagagatcgaggcggccgtgggcng-tcccgcctcatcaccatggacgacgtgccggg 191
|||||||||||| |||| ||||||| | |||||||| |||||| ||| |||||||| |
Sbjct: 61 ggcagagatcgacgcggtcgtgggcagctcccgcctgatcaccccggatgacgtgccccg 120
Query: 192 gctgggctacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgct 251
|| ||||||||||| ||||||||||||||||| |||||| ||||||| | || |||||
Sbjct: 121 cctcggctacctgcactgcgtcatcaacgagaccctgcgcatgtaccctgccgcgccgct 180
Query: 252 gctgctgccgcacgagtcgacggcggactgcacggtcggcggctacgaagtgccccgcgg 311
||| ||||||||||||||| | |||||||||| |||||||||||||| |||||||||||
Sbjct: 181 gctcctgccgcacgagtcgtccgcggactgcaacgtcggcggctacgacgtgccccgcgg 240
Query: 312 cacgctgctgttcgtcacacgcgtacgccatccacagggacccggcggcgtgggaggagc 371
|||||||||| |||| | |||||||||| |||||||||||||| |||| ||||||||| |
Sbjct: 241 cacgctgctgatcgtga-acgcgtacgcgatccacagggaccccgcggtgtgggaggacc 299
Query: 372 cggacgagttcaggccggagcggttccgcgacggcaaggccgagggccggctgatgctgc 431
||| |||||||||||||||||| ||| ||||||||||||||||| |||||| || |||
Sbjct: 300 cggccgagttcaggccggagcgcttcgaggacggcaaggccgaggggcggctgctgatgc 359
Query: 432 cgttcgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccggcc 491
||||||||||||| ||||| | ||| ||||||||||| ||||| |||||||| | |||||
Sbjct: 360 cgttcgggatggggcggcgaaagtgtcccggggagacactcgcgctgcggactgtcggcc 419
Query: 492 tcgtgctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgagatcg 551
| ||||||| || || |||||||||||| ||||||||||| | || || | || ||||
Sbjct: 420 tggtgctcgggacactgatccagtgcttcgactgggacagagttgacggtgtcgaaatcg 479
Query: 552 acatgaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacctgca 611
||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 480 acatgaccgaggccggcgggctgaccatgccccgggccgtcccgttggaggccacgtgca 539
Query: 612 agcctcg 618
|||||||
Sbjct: 540 agcctcg 546
>gb|BE355191.1|BE355191 DG1_10_D02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 594
Score = 476 bits (240), Expect = e-132
Identities = 394/444 (88%), Gaps = 1/444 (0%)
Strand = Plus / Plus
Query: 196 ggctacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctgctg 255
||||||||||||||||||||||||||||| |||||| ||||||| | || ||||||||
Sbjct: 25 ggctacctgcagtgcgtcatcaacgagaccctgcgcatgtaccctgccgcgccgctgctc 84
Query: 256 ctgccgcacgagtcgacggcggactgcacggtcggcggctacgaagtgccccgcggcacg 315
||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 85 ctgccgcacgagtcggcggcggactgcaaggtcggcggctacgacgtgccccgcggcacg 144
Query: 316 ctgctgttcgtcacacgcgtacgccatccacagggacccggcggcgtgggaggagccgga 375
|||||| |||| | |||||||||| |||||||||||||| |||| ||||||||| ||||
Sbjct: 145 ctgctgatcgtga-acgcgtacgcgatccacagggaccccgcggtgtgggaggacccggc 203
Query: 376 cgagttcaggccggagcggttccgcgacggcaaggccgagggccggctgatgctgccgtt 435
|||||||||||||||||||||| ||||||||||||||||| |||||| || |||||||
Sbjct: 204 cgagttcaggccggagcggttcgaggacggcaaggccgaggggcggctgctgatgccgtt 263
Query: 436 cgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccggcctcgt 495
||||||||| ||||||| ||||||||||||||||||||| |||||||||| ||| || ||
Sbjct: 264 cgggatggggcggcgcaagtgccccggggagacgctcgcgctgcggaccgtcgggctggt 323
Query: 496 gctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgagatcgacat 555
||||| |||||| ||||||||| || ||||||||||| |||||||| ||||| |||||
Sbjct: 324 gctcggcacgctgatccagtgcatcgactgggacagagtcgatggcctggagattgacat 383
Query: 556 gaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacctgcaagcc 615
||||| | | |||||||| ||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 384 gaccgcgggtggcgggctgaccatgcccagggccgtcccgttggaggccacgtgcaagcc 443
Query: 616 tcgcgaagccatgcgtcatgttct 639
||| | ||| ||||| |||||||
Sbjct: 444 tcgtgcagctatgcgcgatgttct 467
>gb|BE362029.1|BE362029 DG1_83_E01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 654
Score = 458 bits (231), Expect = e-127
Identities = 385/435 (88%), Gaps = 1/435 (0%)
Strand = Plus / Plus
Query: 205 cagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctgctgctgccgcac 264
|||||||||||||||||||| |||||| ||||||| | || |||||||| |||||||||
Sbjct: 1 cagtgcgtcatcaacgagaccctgcgcatgtaccctgccgcgccgctgctcctgccgcac 60
Query: 265 gagtcgacggcggactgcacggtcggcggctacgaagtgccccgcggcacgctgctgttc 324
|||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 61 gagtcggcggcggactgcaaggtcggcggctacgacgtgccccgcggcacgctgctgatc 120
Query: 325 gtcacacgcgtacgccatccacagggacccggcggcgtgggaggagccggacgagttcag 384
|| | |||||||||| |||||||||||||| |||| ||||||||| |||| |||||||||
Sbjct: 121 gtga-acgcgtacgcgatccacagggaccccgcggtgtgggaggacccggccgagttcag 179
Query: 385 gccggagcggttccgcgacggcaaggccgagggccggctgatgctgccgttcgggatggg 444
||||||||||||| ||||||||||||||||| |||||| || ||||||||||||||||
Sbjct: 180 gccggagcggttcgaggacggcaaggccgaggggcggctgctgatgccgttcgggatggg 239
Query: 445 acggcgcaggtgccccggggagacgctcgctctgcggaccgccggcctcgtgctcgccac 504
||||||| ||||||||||||||||||||| |||||||||| ||| || ||||||| |||
Sbjct: 240 gcggcgcaagtgccccggggagacgctcgcgctgcggaccgtcgggctggtgctcggcac 299
Query: 505 gctcatccagtgcttccactgggacagaatcgatggcgctgagatcgacatgaccgagag 564
||| ||||||||| || ||||||||||| |||||||| ||||| |||||||||| | |
Sbjct: 300 gctgatccagtgcatcgactgggacagagtcgatggcctggagattgacatgaccgcggg 359
Query: 565 cggcgggctcaccatgccccgggccgtcccgttggaggccacctgcaagcctcgcgaagc 624
|||||||| ||||||||| |||||||||||||||||||||| ||||||||||| | |||
Sbjct: 360 tggcgggctgaccatgcccagggccgtcccgttggaggccacgtgcaagcctcgtgcagc 419
Query: 625 catgcgtcatgttct 639
||||| |||||||
Sbjct: 420 tatgcgcgatgttct 434
>gb|CW156277.1|CW156277 104_559_11146598_148_36377_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146598, DNA
sequence
Length = 720
Score = 436 bits (220), Expect = e-120
Identities = 422/487 (86%), Gaps = 2/487 (0%)
Strand = Plus / Minus
Query: 133 ggcagagatcgaggcggccgtgggcng-tcccgcctcatcaccatggacgacgtgccggg 191
|||||||||||| |||| ||||||| | |||||||| |||||| ||| |||||||| |
Sbjct: 676 ggcagagatcgacgcggtcgtgggcagctcccgcctgatcaccccggatgacgtgccccg 617
Query: 192 gctgggctacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgct 251
|| ||||||||||| ||||||||||||||||| |||||| ||||||| | || |||||
Sbjct: 616 cctcggctacctgcactgcgtcatcaacgagaccctgcgcatgtaccctgccgcgccgct 557
Query: 252 gctgctgccgcacgagtcgacggcggactgcacggtcggcggctacgaagtgccccgcgg 311
||| ||||||||||||||| | |||||||||| |||||||||||||| |||||||||||
Sbjct: 556 gctcctgccgcacgagtcgtccgcggactgcaacgtcggcggctacgacgtgccccgcgg 497
Query: 312 cacgctgctgttcgtcacacgcgtacgccatccacagggacccggcggcgtgggaggagc 371
|||||||||| |||| | |||||||||| |||||||||||||| |||| ||||||||| |
Sbjct: 496 cacgctgctgatcgtga-acgcgtacgcgatccacagggaccccgcggtgtgggaggacc 438
Query: 372 cggacgagttcaggccggagcggttccgcgacggcaaggccgagggccggctgatgctgc 431
||| |||||||||||||||||| ||| ||||||||||||||||| |||||| || |||
Sbjct: 437 cggccgagttcaggccggagcgcttcgaggacggcaaggccgaggggcggctgctgatgc 378
Query: 432 cgttcgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccggcc 491
||||||||||||| ||||| | ||| ||||||||||| ||||| |||||||| | |||||
Sbjct: 377 cgttcgggatggggcggcgaaagtgtcccggggagacactcgcgctgcggactgtcggcc 318
Query: 492 tcgtgctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgagatcg 551
| ||||||| || || |||||||||||| ||||||||||| | || || | || ||||
Sbjct: 317 tggtgctcgggacactgatccagtgcttcgactgggacagagttgacggtgtcgaaatcg 258
Query: 552 acatgaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacctgca 611
||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 257 acatgaccgaggccggcgggctgaccatgccccgggccgtcccgttggaggccacgtgca 198
Query: 612 agcctcg 618
|||||||
Sbjct: 197 agcctcg 191
>gb|CX613643.1|CX613643 GABR1_9_H05.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_9_H05_A002 3', mRNA sequence
Length = 604
Score = 402 bits (203), Expect = e-110
Identities = 396/459 (86%), Gaps = 1/459 (0%)
Strand = Plus / Plus
Query: 160 tcccgcctcatcaccatggacgacgtgccggggctgggctacctgcagtgcgtcatcaac 219
|||||||| |||||| ||| |||||||| | || ||||||||||| ||||||||||||
Sbjct: 9 tcccgcctgatcaccccggatgacgtgccccgcctcggctacctgcattgcgtcatcaac 68
Query: 220 gagacgctgcgcctgtacccggtggccccgctgctgctgccgcacgagtcgacggcggac 279
||||| |||||| ||||||| | || |||||||| ||||||||||||||| | ||||||
Sbjct: 69 gagaccctgcgcatgtaccctgccgcgccgctgctcctgccgcacgagtcgtccgcggac 128
Query: 280 tgcacggtcggcggctacgaagtgccccgcggcacgctgctgttcgtcacacgcgtacgc 339
|||| |||||||| ||||| ||||||||||||||||||||| |||| | ||||||||||
Sbjct: 129 tgcaacgtcggcggttacgacgtgccccgcggcacgctgctgatcgtga-acgcgtacgc 187
Query: 340 catccacagggacccggcggcgtgggaggagccggacgagttcaggccggagcggttccg 399
|||| ||||||||| |||| ||||||||| |||| |||||||||||||||||| |||
Sbjct: 188 gatccgcagggaccccgcggtgtgggaggacccggccgagttcaggccggagcgcttcga 247
Query: 400 cgacggcaaggccgagggccggctgatgctgccgttcgggatgggacggcgcaggtgccc 459
||||||||||||||||| |||||| || |||||||||||||||| ||||| | ||| ||
Sbjct: 248 ggacggcaaggccgaggggcggctgctgatgccgttcgggatggggcggcgaaagtgtcc 307
Query: 460 cggggagacgctcgctctgcggaccgccggcctcgtgctcgccacgctcatccagtgctt 519
||||||||| ||||| |||||||| | |||||| ||||||| || || |||||||||||
Sbjct: 308 cggggagacactcgcgctgcggactgtcggcctggtgctcgggacactgatccagtgctt 367
Query: 520 ccactgggacagaatcgatggcgctgagatcgacatgaccgagagcggcgggctcaccat 579
| ||||||||||| | || || | || ||||||||||||||| ||||||||| |||||
Sbjct: 368 cgactgggacagagttgacggtgtcgaaatcgacatgaccgaggccggcgggctgaccat 427
Query: 580 gccccgggccgtcccgttggaggccacctgcaagcctcg 618
||||||||||||||||||||||||||| |||||||||||
Sbjct: 428 gccccgggccgtcccgttggaggccacgtgcaagcctcg 466
>gb|CW192718.1|CW192718 104_615_11179178_148_36775_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11179178, DNA
sequence
Length = 730
Score = 400 bits (202), Expect = e-110
Identities = 508/607 (83%), Gaps = 5/607 (0%)
Strand = Plus / Plus
Query: 50 gccggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctgctgaaccac 109
|||||||||||||| ||||| |||||| ||||||||||||||||| ||||||||||||
Sbjct: 18 gccggaacggagaccacgtccaccacgacggaatgggccatgtcgctcctgctgaaccac 77
Query: 110 ccggaggcgctgaagaaggccgaggcagagatcgaggcggccgtgggcng-tcccgcctc 168
||||||| || |||||||| |||| |||||||| || ||||||||| ||||||||
Sbjct: 78 ccggaggtcctcaagaaggcgcaggccgagatcgacgccgccgtgggcacctcccgcctg 137
Query: 169 atcaccatggacgacgtgccggggctgggctacctgcagtgcgtcatcaacgagacgctg 228
| ||| |||||||||| | | || ||||||||||||| |||||||||||||||||
Sbjct: 138 gtgaccgcggacgacgtgtctcgcctcacctacctgcagtgcatcatcaacgagacgctg 197
Query: 229 cgcctgtacccggtggccccgctgctgctgccgcacgagtcgacggcggactgcacggtc 288
|||||| |||| | || ||||||||||||||||||||||| | || ||||||| ||||
Sbjct: 198 cgcctgcacccagccgcgccgctgctgctgccgcacgagtcctccgcagactgcaaggtc 257
Query: 289 ggcggctacgaagtgccccgcggcacgctgctgttcgtcacacgcgtacgccatccacag 348
||||||||||| ||||||||||||||| ||||| | || | ||| | |||| |||||||
Sbjct: 258 ggcggctacgacgtgccccgcggcacgatgctgctggtga-acgtgcacgcggtccacag 316
Query: 349 ggacccggcggcgtgggaggagccggacgagttcaggccggagcggttccgcgacggcaa 408
|||||| | || ||||| || ||| | |||| ||||||||||||| ||||||||
Sbjct: 317 ggaccccgtggtctgggaagaaccgagcagattcatgccggagcggttcgaggacggcaa 376
Query: 409 g---gccgagggccggctgatgctgccgttcgggatgggacggcgcaggtgccccgggga 465
| |||||||| |||||| || |||||||||||||||| ||||||| ||||||||||||
Sbjct: 377 gcaggccgaggggcggctgctgatgccgttcgggatggggcggcgcaagtgccccgggga 436
Query: 466 gacgctcgctctgcggaccgccggcctcgtgctcgccacgctcatccagtgcttccactg 525
| ||||||| |||||||||| ||| || ||||||| |||||| |||||||||||| ||||
Sbjct: 437 ggcgctcgcgctgcggaccgtcgggctggtgctcggcacgctgatccagtgcttcgactg 496
Query: 526 ggacagaatcgatggcgctgagatcgacatgaccgagagcggcgggctcaccatgccccg 585
|||||| | ||||| | |||| |||||||| |||||||||||||||| ||||||||| |
Sbjct: 497 ggacagggttgatggagttgaggtcgacatggccgagagcggcgggctgaccatgcccag 556
Query: 586 ggccgtcccgttggaggccacctgcaagcctcgcgaagccatgcgtcatgttcttcagca 645
|||||||||| |||||||| |||||||| |||| ||| |||||| ||||||||||| |
Sbjct: 557 ggccgtcccgctggaggccctgtgcaagccgcgcgcagctatgcgtgatgttcttcagaa 616
Query: 646 gctctga 652
|||||||
Sbjct: 617 gctctga 623
>gb|BE360028.1|BE360028 DG1_60_C08.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 634
Score = 394 bits (199), Expect = e-108
Identities = 332/375 (88%), Gaps = 1/375 (0%)
Strand = Plus / Plus
Query: 265 gagtcgacggcggactgcacggtcggcggctacgaagtgccccgcggcacgctgctgttc 324
|||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 1 gagtcggcggcggactgcaaggtcggcggctacgacgtgccccgcggcacgctgctgatc 60
Query: 325 gtcacacgcgtacgccatccacagggacccggcggcgtgggaggagccggacgagttcag 384
|| | |||||||||| |||||||||||||| |||| ||||||||| |||| |||||||||
Sbjct: 61 gtga-acgcgtacgcgatccacagggaccccgcggtgtgggaggacccggccgagttcag 119
Query: 385 gccggagcggttccgcgacggcaaggccgagggccggctgatgctgccgttcgggatggg 444
||||||||||||| ||||||||||||||||| |||||| || ||||||||||||||||
Sbjct: 120 gccggagcggttcgaggacggcaaggccgaggggcggctgctgatgccgttcgggatggg 179
Query: 445 acggcgcaggtgccccggggagacgctcgctctgcggaccgccggcctcgtgctcgccac 504
||||||| ||||||||||||||||||||| |||||||||| ||| || ||||||| |||
Sbjct: 180 gcggcgcaagtgccccggggagacgctcgcgctgcggaccgtcgggctggtgctcggcac 239
Query: 505 gctcatccagtgcttccactgggacagaatcgatggcgctgagatcgacatgaccgagag 564
||| ||||||||| || ||||||||||| |||||||| ||||| |||||||||| | |
Sbjct: 240 gctgatccagtgcatcgactgggacagagtcgatggcctggagattgacatgaccgcggg 299
Query: 565 cggcgggctcaccatgccccgggccgtcccgttggaggccacctgcaagcctcgcgaagc 624
|||||||| ||||||||| |||||||||||||||||||||| ||||||||||| | |||
Sbjct: 300 tggcgggctgaccatgcccagggccgtcccgttggaggccacgtgcaagcctcgtgcagc 359
Query: 625 catgcgtcatgttct 639
||||| |||||||
Sbjct: 360 tatgcgcgatgttct 374
>gb|BE363286.1|BE363286 WS1_61_D09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 501
Score = 394 bits (199), Expect = e-108
Identities = 332/375 (88%), Gaps = 1/375 (0%)
Strand = Plus / Plus
Query: 265 gagtcgacggcggactgcacggtcggcggctacgaagtgccccgcggcacgctgctgttc 324
|||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 1 gagtcggcggcggactgcaaggtcggcggctacgacgtgccccgcggcacgctgctgatc 60
Query: 325 gtcacacgcgtacgccatccacagggacccggcggcgtgggaggagccggacgagttcag 384
|| | |||||||||| |||||||||||||| |||| ||||||||| |||| |||||||||
Sbjct: 61 gtga-acgcgtacgcgatccacagggaccccgcggtgtgggaggacccggccgagttcag 119
Query: 385 gccggagcggttccgcgacggcaaggccgagggccggctgatgctgccgttcgggatggg 444
||||||||||||| ||||||||||||||||| |||||| || ||||||||||||||||
Sbjct: 120 gccggagcggttcgaggacggcaaggccgaggggcggctgctgatgccgttcgggatggg 179
Query: 445 acggcgcaggtgccccggggagacgctcgctctgcggaccgccggcctcgtgctcgccac 504
||||||| ||||||||||||||||||||| |||||||||| ||| || ||||||| |||
Sbjct: 180 gcggcgcaagtgccccggggagacgctcgcgctgcggaccgtcgggctggtgctcggcac 239
Query: 505 gctcatccagtgcttccactgggacagaatcgatggcgctgagatcgacatgaccgagag 564
||| ||||||||| || ||||||||||| |||||||| ||||| |||||||||| | |
Sbjct: 240 gctgatccagtgcatcgactgggacagagtcgatggcctggagattgacatgaccgcggg 299
Query: 565 cggcgggctcaccatgccccgggccgtcccgttggaggccacctgcaagcctcgcgaagc 624
|||||||| ||||||||| |||||||||||||||||||||| ||||||||||| | |||
Sbjct: 300 tggcgggctgaccatgcccagggccgtcccgttggaggccacgtgcaagcctcgtgcagc 359
Query: 625 catgcgtcatgttct 639
||||| |||||||
Sbjct: 360 tatgcgcgatgttct 374
>gb|CD226055.1|CD226055 CCC1_43_F04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_43_F04_A007 3', mRNA sequence
Length = 636
Score = 394 bits (199), Expect = e-108
Identities = 356/407 (87%), Gaps = 1/407 (0%)
Strand = Plus / Plus
Query: 212 tcatcaacgagacgctgcgcctgtacccggtggccccgctgctgctgccgcacgagtcga 271
||||||||||||| |||||| ||||||| | || |||||||| |||||||||||||||
Sbjct: 1 tcatcaacgagaccctgcgcatgtaccctgccgcgccgctgctcctgccgcacgagtcgt 60
Query: 272 cggcggactgcacggtcggcggctacgaagtgccccgcggcacgctgctgttcgtcacac 331
| |||||||||| |||||||||||||| ||||||||||||||||||||| |||| | ||
Sbjct: 61 ccgcggactgcaacgtcggcggctacgacgtgccccgcggcacgctgctgatcgtga-ac 119
Query: 332 gcgtacgccatccacagggacccggcggcgtgggaggagccggacgagttcaggccggag 391
|||||||| |||||||||||||| |||| ||||||||| |||| ||||||||||||||||
Sbjct: 120 gcgtacgcgatccacagggaccccgcggtgtgggaggacccggccgagttcaggccggag 179
Query: 392 cggttccgcgacggcaaggccgagggccggctgatgctgccgttcgggatgggacggcgc 451
|| ||| ||||||||||||||||| |||||| || |||||||||||||||| ||||||
Sbjct: 180 cgcttcgaggacggcaaggccgaggggcggctgctgatgccgttcgggatggggcggcgc 239
Query: 452 aggtgccccggggagacgctcgctctgcggaccgccggcctcgtgctcgccacgctcatc 511
| ||||||||||||||||||||| |||||||| | ||| || ||||||| || || |||
Sbjct: 240 aagtgccccggggagacgctcgcgctgcggactgtcgggctggtgctcgggacactgatc 299
Query: 512 cagtgcttccactgggacagaatcgatggcgctgagatcgacatgaccgagagcggcggg 571
|||||||| ||||||||||| | || || | || ||||||||||||||| |||||||
Sbjct: 300 cagtgctttgactgggacagagttgacggtgtcgaaatcgacatgaccgaggccggcggg 359
Query: 572 ctcaccatgccccgggccgtcccgttggaggccacctgcaagcctcg 618
|| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 360 ctgaccatgccccgggccgtcccgttggaggccacgtgcaagcctcg 406
>gb|CW193504.1|CW193504 104_616_11179600_148_36779_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11179600, DNA
sequence
Length = 697
Score = 381 bits (192), Expect = e-104
Identities = 483/577 (83%), Gaps = 5/577 (0%)
Strand = Plus / Minus
Query: 80 gaatgggccatgtcgctgctgctgaaccacccggaggcgctgaagaaggccgaggcagag 139
||||||||||||||||| ||||||||||||||||||| || |||||||| |||| |||
Sbjct: 695 gaatgggccatgtcgctcctgctgaaccacccggaggtcctcaagaaggcgcaggccgag 636
Query: 140 atcgaggcggccgtgggcng-tcccgcctcatcaccatggacgacgtgccggggctgggc 198
||||| || ||||||||| |||||||| | ||| |||||||||| | | || |
Sbjct: 635 atcgacgccgccgtgggcacctcccgcctggtgaccgcggacgacgtgtctcgcctcacc 576
Query: 199 tacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctgctgctg 258
|||||||||||| ||||||||||||||||||||||| |||| | || ||||||||||||
Sbjct: 575 tacctgcagtgcatcatcaacgagacgctgcgcctgcacccagccgcgccgctgctgctg 516
Query: 259 ccgcacgagtcgacggcggactgcacggtcggcggctacgaagtgccccgcggcacgctg 318
||||||||||| | || ||||||| ||||||||||||||| ||||||||||||||| ||
Sbjct: 515 ccgcacgagtcctccgcagactgcaaggtcggcggctacgacgtgccccgcggcacgatg 456
Query: 319 ctgttcgtcacacgcgtacgccatccacagggacccggcggcgtgggaggagccggacga 378
||| | || | ||| | |||| ||||||||||||| | || ||||| || ||| |
Sbjct: 455 ctgctggtga-acgtgcacgcggtccacagggaccccgtggtctgggaagaaccgagcag 397
Query: 379 gttcaggccggagcggttccgcgacggcaag---gccgagggccggctgatgctgccgtt 435
|||| ||||||||||||| ||||||||| |||||||| |||||| || |||||||
Sbjct: 396 attcatgccggagcggttcgaggacggcaagcaggccgaggggcggctgctgatgccgtt 337
Query: 436 cgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccggcctcgt 495
||||||||| ||||||| ||||||||||||| ||||||| |||||||||| ||| || ||
Sbjct: 336 cgggatggggcggcgcaagtgccccggggaggcgctcgcgctgcggaccgtcgggctggt 277
Query: 496 gctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgagatcgacat 555
||||| |||||| |||||||||||| |||||||||| | ||||| | |||| |||||||
Sbjct: 276 gctcggcacgctgatccagtgcttcgactgggacagggttgatggagttgaggtcgacat 217
Query: 556 gaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacctgcaagcc 615
| |||||||||||||||| ||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 216 ggccgagagcggcgggctgaccatgcccagggccgtcccgctggaggccctgtgcaagcc 157
Query: 616 tcgcgaagccatgcgtcatgttcttcagcagctctga 652
|||| ||| |||||| ||||||||||| ||||||||
Sbjct: 156 gcgcgcagctatgcgtgatgttcttcagaagctctga 120
>gb|BE357452.1|BE357452 DG1_15_A08.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 602
Score = 379 bits (191), Expect = e-103
Identities = 338/385 (87%), Gaps = 2/385 (0%)
Strand = Plus / Plus
Query: 14 accatgatcatggcactgtgcgggnacttgtttacagccggaacggagacgacgtcgtcc 73
||||||||||||||||| |||||| | || ||| |||||||||||||| || ||||||
Sbjct: 211 accatgatcatggcactttgcgggaatttatttggcgccggaacggagaccacatcgtcc 270
Query: 74 acgatagaatgggccatgtcgctgctgctgaaccacccggaggcgctgaagaaggccgag 133
|||| |||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct: 271 acgacagaatgggccatgtcgcttcttctgaaccacccggaggcgctgaagaaggcacag 330
Query: 134 gcagagatcgaggcggccgtgggcng-tcccgcctcatcaccatggacgacgtgccgggg 192
||||||||||| |||| ||||||| ||||| || |||||| || |||||||| |
Sbjct: 331 gcagagatcgacgcggtcgtgggcaactcccggctgatcaccgcagaagacgtgcctcgc 390
Query: 193 ctgggctacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctg 252
|| ||||||||||||||||||||||||||||| |||||| ||||||| | || ||||||
Sbjct: 391 ctcggctacctgcagtgcgtcatcaacgagaccctgcgcatgtaccctgccgcgccgctg 450
Query: 253 ctgctgccgcacgagtcgacggcggactgcacggtcggcggctacgaagtgccccgcggc 312
|| ||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 451 ctcctgccgcacgagtcggcggcggactgcaaggtcggcggctacgacgtgccccgcggc 510
Query: 313 acgctgctgttcgtcacacgcgtacgccatccacagggacccggcggcgtgggaggagcc 372
||||||||| |||| | |||||||||| |||||||||||||| |||| ||||||||| ||
Sbjct: 511 acgctgctgatcgtga-acgcgtacgcgatccacagggaccccgcggtgtgggaggaccc 569
Query: 373 ggacgagttcaggccggagcggttc 397
|| ||||||||||||||||||||||
Sbjct: 570 ggccgagttcaggccggagcggttc 594
>gb|CX610228.1|CX610228 ANR1_17_H06.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_17_H06_A002 3', mRNA sequence
Length = 734
Score = 367 bits (185), Expect = 1e-099
Identities = 481/577 (83%), Gaps = 5/577 (0%)
Strand = Plus / Plus
Query: 80 gaatgggccatgtcgctgctgctgaaccacccggaggcgctgaagaaggccgaggcagag 139
||||||||||||||||| ||||||||||||||||||| || |||||||| |||| |||
Sbjct: 6 gaatgggccatgtcgctcctgctgaaccacccggaggtcctcaagaaggcgcaggccgag 65
Query: 140 atcgaggcggccgtgggcng-tcccgcctcatcaccatggacgacgtgccggggctgggc 198
||||| || ||||||||| |||||||| | ||| |||||||||| | | || |
Sbjct: 66 atcgacgccgccgtgggcacctcccgcctggtgaccgcggacgacgtgtctcgcctcacc 125
Query: 199 tacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctgctgctg 258
|||||||||||| |||||||||||||| |||||||| |||| | || ||||||||||||
Sbjct: 126 tacctgcagtgcatcatcaacgagacgntgcgcctgcacccagccgcgccgctgctgctg 185
Query: 259 ccgcacgagtcgacggcggactgcacggtcggcggctacgaagtgccccgcggcacgctg 318
||||||||||| | || ||||||| ||||||||| ||||| ||||||||||||||| ||
Sbjct: 186 ccgcacgagtcctccgcagactgcaaggtcggcggttacgacgtgccccgcggcacgatg 245
Query: 319 ctgttcgtcacacgcgtacgccatccacagggacccggcggcgtgggaggagccggacga 378
||| | || | ||| | |||| ||||||||||||| | || ||||| || ||| |
Sbjct: 246 ctgctggtga-acgtgcacgcggtccacagggaccccgtggtctgggaagaaccgagcag 304
Query: 379 gttcaggccggagcggttccgcgacggcaag---gccgagggccggctgatgctgccgtt 435
|||| ||||||||||||| ||||||||| |||||||| |||||| || |||||||
Sbjct: 305 attcatgccggagcggttcgaggacggcaagcaggccgaggggcggctgctgatgccgtt 364
Query: 436 cgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccggcctcgt 495
||||||||| ||||||| ||||||||||||| ||||||| |||||||||| ||| || ||
Sbjct: 365 cgggatggggcggcgcaagtgccccggggaggcgctcgcgctgcggaccgtcgggctggt 424
Query: 496 gctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgagatcgacat 555
||||| |||||| |||||||||||| |||||||||| | ||||| | |||| |||||||
Sbjct: 425 gctcggcacgctgatccagtgcttcgactgggacagggttgatggagttgaggtcgacat 484
Query: 556 gaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacctgcaagcc 615
| |||||||||||||||| ||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 485 ggccgagagcggcgggctgaccatgcccagggccgtcccgctggaggccctgtgcaagcc 544
Query: 616 tcgcgaagccatgcgtcatgttcttcagcagctctga 652
|||| ||| |||||| ||||||||||| ||||||||
Sbjct: 545 gcgcgcagctatgcgtgatgttcttcagaagctctga 581
>gb|BE363200.1|BE363200 WS1_61_D09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 495
Score = 339 bits (171), Expect = 2e-091
Identities = 312/357 (87%), Gaps = 2/357 (0%)
Strand = Plus / Plus
Query: 14 accatgatcatggcactgtgcgggnacttgtttacagccggaacggagacgacgtcgtcc 73
||||||||||||||||| |||||| | || ||| |||||||||||||| || ||||||
Sbjct: 139 accatgatcatggcactttgcgggaatttatttggcgccggaacggagaccacatcgtcc 198
Query: 74 acgatagaatgggccatgtcgctgctgctgaaccacccggaggcgctgaagaaggccgag 133
|||| |||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct: 199 acgacagaatgggccatgtcgcttcttctgaaccacccggaggcgctgaagaaggcacag 258
Query: 134 gcagagatcgaggcggccgtgggcng-tcccgcctcatcaccatggacgacgtgccgggg 192
||||||||||| |||| ||||||| ||||| || |||||| || |||||||| |
Sbjct: 259 gcagagatcgacgcggtcgtgggcaactcccggctgatcaccgcagaagacgtgcctcgc 318
Query: 193 ctgggctacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctg 252
|| ||||||||||||||||||||||||||||| |||||| ||||||| | || ||||||
Sbjct: 319 ctcggctacctgcagtgcgtcatcaacgagaccctgcgcatgtaccctgccgcgccgctg 378
Query: 253 ctgctgccgcacgagtcgacggcggactgcacggtcggcggctacgaagtgccccgcggc 312
|| ||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 379 ctcctgccgcacgagtcggcggcggactgcaaggtcggcggctacgacgtgccccgcggc 438
Query: 313 acgctgctgttcgtcacacgcgtacgccatccacagggacccggcggcgtgggagga 369
||||||||| |||| | |||||||||| |||||||||||||| |||| |||||||||
Sbjct: 439 acgctgctgatcgtga-acgcgtacgcgatccacagggaccccgcggtgtgggagga 494
>gb|CD464006.1|CD464006 ETH1_48_F01.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_48_F01_A002 3', mRNA sequence
Length = 565
Score = 319 bits (161), Expect = 2e-085
Identities = 380/451 (84%), Gaps = 4/451 (0%)
Strand = Plus / Plus
Query: 205 cagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctgctgctgccgcac 264
|||||| ||||||||||||||||||||||| |||| | || ||||||||||||||||||
Sbjct: 1 cagtgcatcatcaacgagacgctgcgcctgcacccagccgcgccgctgctgctgccgcac 60
Query: 265 gagtcgacggcggactgcacggtcggcggctacgaagtgccccgcggcacgctgctgttc 324
||||| | || ||||||| ||||||||||||||| ||||||||||||||| ||||| |
Sbjct: 61 gagtcctccgcagactgcaaggtcggcggctacgacgtgccccgcggcacgatgctgctg 120
Query: 325 gtcacacgcgtacgccatccacagggacccggcggcgtgggaggagccggacgagttcag 384
|| | ||| | |||| ||||||||||||| | || ||||| || ||| | ||||
Sbjct: 121 gtga-acgtgcacgcggtccacagggaccccgtggtctgggaagaaccgagcagattcat 179
Query: 385 gccggagcggttccgcgacggcaag---gccgagggccggctgatgctgccgttcgggat 441
||||||||||||| ||||||||| |||||||| |||||| || ||| |||||||||
Sbjct: 180 gccggagcggttcgaggacggcaagcaggccgaggggcggctgctgatgctgttcgggat 239
Query: 442 gggacggcgcaggtgccccggggagacgctcgctctgcggaccgccggcctcgtgctcgc 501
||| ||||||| ||||||||||||| ||||||| |||||||||| ||| || |||||||
Sbjct: 240 ggggcggcgcaagtgccccggggaggcgctcgcgctgcggaccgtcgggctggtgctcgg 299
Query: 502 cacgctcatccagtgcttccactgggacagaatcgatggcgctgagatcgacatgaccga 561
|||||| |||||||||||| |||||||||| | ||||| | |||| |||||||| ||||
Sbjct: 300 cacgctgatccagtgcttcgactgggacagggttgatggagttgaggtcgacatggccga 359
Query: 562 gagcggcgggctcaccatgccccgggccgtcccgttggaggccacctgcaagcctcgcga 621
|||||||||||| ||||||||| ||||||||||| |||||||| |||||||| ||||
Sbjct: 360 gagcggcgggctgaccatgcccagggccgtcccgctggaggccctgtgcaagccgcgcgc 419
Query: 622 agccatgcgtcatgttcttcagcagctctga 652
||| |||||| ||||||||||| ||||||||
Sbjct: 420 agctatgcgtgatgttcttcagaagctctga 450
>gb|CW393838.1|CW393838 fsbb001f081b07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f081b07, DNA
sequence
Length = 634
Score = 283 bits (143), Expect = 1e-074
Identities = 245/278 (88%), Gaps = 1/278 (0%)
Strand = Plus / Plus
Query: 50 gccggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctgctgaaccac 109
|||||||||||||| || |||||||||| |||||||||||||||||| || |||||||||
Sbjct: 352 gccggaacggagaccacatcgtccacgacagaatgggccatgtcgcttcttctgaaccac 411
Query: 110 ccggaggcgctgaagaaggccgaggcagagatcgaggcggccgtgggcng-tcccgcctc 168
|||||||||||||||||||| ||||||||||||| |||| ||||||| ||||| ||
Sbjct: 412 ccggaggcgctgaagaaggcacaggcagagatcgacgcggtcgtgggcaactcccggctg 471
Query: 169 atcaccatggacgacgtgccggggctgggctacctgcagtgcgtcatcaacgagacgctg 228
|||||| || |||||||| | || ||||||||||||||||||||||||||||| |||
Sbjct: 472 atcaccgcagaagacgtgcctcgcctcggctacctgcagtgcgtcatcaacgagaccctg 531
Query: 229 cgcctgtacccggtggccccgctgctgctgccgcacgagtcgacggcggactgcacggtc 288
||| ||||||| | || |||||||| ||||||||||||||| |||||||||||| ||||
Sbjct: 532 cgcatgtaccctgccgcgccgctgctcctgccgcacgagtcggcggcggactgcaaggtc 591
Query: 289 ggcggctacgaagtgccccgcggcacgctgctgttcgt 326
||||||||||| ||||||||||||||||||||| ||||
Sbjct: 592 ggcggctacgacgtgccccgcggcacgctgctgatcgt 629
Score = 40.1 bits (20), Expect = 0.32
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 accatgatcatggcactgtgcggg 37
||||||||||||||||| ||||||
Sbjct: 56 accatgatcatggcactttgcggg 79
>gb|AW922538.1|AW922538 DG1_20_D10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 430
Score = 270 bits (136), Expect = 2e-070
Identities = 232/264 (87%)
Strand = Plus / Plus
Query: 376 cgagttcaggccggagcggttccgcgacggcaaggccgagggccggctgatgctgccgtt 435
|||||||||||||||||||||| ||||||||||||||||| |||||| || |||||||
Sbjct: 2 cgagttcaggccggagcggttcgaggacggcaaggccgaggggcggctgctgatgccgtt 61
Query: 436 cgggatgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccggcctcgt 495
||||||||| ||||||| ||||||||||||||||||||| |||||||||| ||| || ||
Sbjct: 62 cgggatggggcggcgcaagtgccccggggagacgctcgcgctgcggaccgtcgggctggt 121
Query: 496 gctcgccacgctcatccagtgcttccactgggacagaatcgatggcgctgagatcgacat 555
||||| |||||| ||||||||| || ||||||||||| |||||||| ||||| |||||
Sbjct: 122 gctcggcacgctgatccagtgcatcgactgggacagagtcgatggcctggagattgacat 181
Query: 556 gaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacctgcaagcc 615
||||| | | |||||||| ||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 182 gaccgcgggtggcgggctgaccatgcccagggccgtcccgttggaggccacgtgcaagcc 241
Query: 616 tcgcgaagccatgcgtcatgttct 639
||| | ||| ||||| |||||||
Sbjct: 242 tcgtgcagctatgcgcgatgttct 265
>gb|AW922289.1|AW922289 DG1_17_H09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 535
Score = 218 bits (110), Expect = 6e-055
Identities = 197/226 (87%)
Strand = Plus / Plus
Query: 414 agggccggctgatgctgccgttcgggatgggacggcgcaggtgccccggggagacgctcg 473
|||| |||||| || |||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 1 aggggcggctgctgatgccgttcgggatggggcggcgcaagtgccccggggagacgctcg 60
Query: 474 ctctgcggaccgccggcctcgtgctcgccacgctcatccagtgcttccactgggacagaa 533
| |||||||||| ||| || ||||||| |||||| ||||||||| || |||||||||||
Sbjct: 61 cgctgcggaccgtcgggctggtgctcggcacgctgatccagtgcatcgactgggacagag 120
Query: 534 tcgatggcgctgagatcgacatgaccgagagcggcgggctcaccatgccccgggccgtcc 593
|||||||| ||||| |||||||||| | | |||||||| ||||||||| |||||||||
Sbjct: 121 tcgatggcctggagattgacatgaccgcgggtggcgggctgaccatgcccagggccgtcc 180
Query: 594 cgttggaggccacctgcaagcctcgcgaagccatgcgtcatgttct 639
||||||||||||| ||||||||||| | ||| ||||| |||||||
Sbjct: 181 cgttggaggccacgtgcaagcctcgtgcagctatgcgcgatgttct 226
>gb|CW193503.1|CW193503 104_616_11179600_116_36780_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11179600, DNA
sequence
Length = 650
Score = 202 bits (102), Expect = 4e-050
Identities = 231/273 (84%), Gaps = 1/273 (0%)
Strand = Plus / Plus
Query: 50 gccggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctgctgaaccac 109
|||||||||||||| ||||| |||||| ||||||||||||||||| ||||||||||||
Sbjct: 337 gccggaacggagaccacgtccaccacgacggaatgggccatgtcgctcctgctgaaccac 396
Query: 110 ccggaggcgctgaagaaggccgaggcagagatcgaggcggccgtgggcng-tcccgcctc 168
||||||| || |||||||| |||| |||||||| || ||||||||| ||||||||
Sbjct: 397 ccggaggtcctcaagaaggcgcaggccgagatcgacgccgccgtgggcacctcccgcctg 456
Query: 169 atcaccatggacgacgtgccggggctgggctacctgcagtgcgtcatcaacgagacgctg 228
| ||| |||||||||| | | || ||||||||||||| |||||||||||||||||
Sbjct: 457 gtgaccgcggacgacgtgtctcgcctcacctacctgcagtgcatcatcaacgagacgctg 516
Query: 229 cgcctgtacccggtggccccgctgctgctgccgcacgagtcgacggcggactgcacggtc 288
|||||| |||| | || ||||||||||||||||||||||| | || ||||||| ||||
Sbjct: 517 cgcctgcacccagccgcgccgctgctgctgccgcacgagtcctccgcagactgcaaggtc 576
Query: 289 ggcggctacgaagtgccccgcggcacgctgctg 321
||||||||||| ||||||||||||||| |||||
Sbjct: 577 ggcggctacgacgtgccccgcggcacgatgctg 609
>gb|CD222314.1|CD222314 CCC1_21_E10.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_21_E10_A007 3', mRNA sequence
Length = 655
Score = 196 bits (99), Expect = 2e-048
Identities = 197/229 (86%), Gaps = 1/229 (0%)
Strand = Plus / Plus
Query: 14 accatgatcatggcactgtgcgggnacttgtttacagccggaacggagacgacgtcgtcc 73
||||||||||||||||| |||||| | || ||| |||||||||||||| || ||||||
Sbjct: 83 accatgatcatggcactttgcgggaatttatttggcgccggaacggagaccacatcgtcc 142
Query: 74 acgatagaatgggccatgtcgctgctgctgaaccacccggaggcgctgaagaaggccgag 133
|||| |||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct: 143 acgacagaatgggccatgtcgcttcttctgaaccacccggaggcgctgaagaaggcacag 202
Query: 134 gcagagatcgaggcggccgtgggc-ngtcccgcctcatcaccatggacgacgtgccgggg 192
||||||||||| || | ||||||| ||||| || |||||| || |||||||| |
Sbjct: 203 gcagagatcgacgccgtcgtgggcaactcccggctgatcaccgcagaagacgtgccccgc 262
Query: 193 ctgggctacctgcagtgcgtcatcaacgagacgctgcgcctgtacccgg 241
|| ||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 263 ctcggctacctgcagtgcgtcatcaacgagaccctgcgcatgtacccgg 311
>gb|BG464902.1|BG464902 EM1_35_G06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 293
Score = 190 bits (96), Expect = 1e-046
Identities = 174/200 (87%)
Strand = Plus / Plus
Query: 440 atgggacggcgcaggtgccccggggagacgctcgctctgcggaccgccggcctcgtgctc 499
||||| ||||||| ||||||||||||||||||||| |||||||||| ||| || ||||||
Sbjct: 1 atggggcggcgcaagtgccccggggagacgctcgcgctgcggaccgtcgggctggtgctc 60
Query: 500 gccacgctcatccagtgcttccactgggacagaatcgatggcgctgagatcgacatgacc 559
| |||||| ||||||||| || ||||||||||| |||||||| ||||| |||||||||
Sbjct: 61 ggcacgctgatccagtgcatcgactgggacagagtcgatggcctggagattgacatgacc 120
Query: 560 gagagcggcgggctcaccatgccccgggccgtcccgttggaggccacctgcaagcctcgc 619
| | | |||||||| ||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 121 gcgggtggcgggctgaccatgcccagggccgtcccgttggaggccacgtgcaagcctcgt 180
Query: 620 gaagccatgcgtcatgttct 639
| ||| ||||| |||||||
Sbjct: 181 gcagctatgcgcgatgttct 200
>gb|BG464759.1|BG464759 EM1_33_G05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 357
Score = 180 bits (91), Expect = 1e-043
Identities = 168/194 (86%)
Strand = Plus / Plus
Query: 446 cggcgcaggtgccccggggagacgctcgctctgcggaccgccggcctcgtgctcgccacg 505
||||||| ||||||||||||||||||||| |||||||||| ||| || ||||||| ||||
Sbjct: 9 cggcgcaagtgccccggggagacgctcgcgctgcggaccgtcgggctggtgctcggcacg 68
Query: 506 ctcatccagtgcttccactgggacagaatcgatggcgctgagatcgacatgaccgagagc 565
|| ||||||||| || ||||||||||| |||| ||| ||||| |||||||||| | |
Sbjct: 69 ctgatccagtgcatcgactgggacagagtcganggcctggagattgacatgaccgcgggt 128
Query: 566 ggcgggctcaccatgccccgggccgtcccgttggaggccacctgcaagcctcgcgaagcc 625
|||||||| ||||||||| |||||||||||||||||||||| ||||||||||| | |||
Sbjct: 129 ggcgggctgaccatgcccagggccgtcccgttggaggccacgtgcaagcctcgtgcagct 188
Query: 626 atgcgtcatgttct 639
||||| |||||||
Sbjct: 189 atgcgcgatgttct 202
>gb|BG464757.1|BG464757 EM1_33_G01.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 268
Score = 174 bits (88), Expect = 8e-042
Identities = 150/171 (87%)
Strand = Plus / Plus
Query: 448 gcgcaggtgccccggggagacgctcgctctgcggaccgccggcctcgtgctcgccacgct 507
||||| ||||||||||||||||||||| |||||||||| ||| || ||||||| ||||||
Sbjct: 1 gcgcaagtgccccggggagacgctcgcgctgcggaccgtcgggctggtgctcggcacgct 60
Query: 508 catccagtgcttccactgggacagaatcgatggcgctgagatcgacatgaccgagagcgg 567
||||||||| || ||||||||||| |||| ||| ||||| |||||||||| | | ||
Sbjct: 61 gatccagtgcatcgactgggacagagtcganggcctggagattgacatgaccgcgggtgg 120
Query: 568 cgggctcaccatgccccgggccgtcccgttggaggccacctgcaagcctcg 618
|||||| ||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 121 cgggctgaccatgcccagggccgtcccgttggaggccacgtgcaagcctcg 171
>gb|CW239661.1|CW239661 104_698_11217778_116_37423_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11217778, DNA
sequence
Length = 583
Score = 168 bits (85), Expect = 5e-040
Identities = 110/117 (94%), Gaps = 1/117 (0%)
Strand = Plus / Minus
Query: 42 tgtttaca-gccggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctg 100
|||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 136 tgtttacacgccggaacggagacgacgttgtcgacgatagaatgggccatgtcgctgctg 77
Query: 101 ctgaaccacccggaggcgctgaagaaggccgaggcagagatcgaggcggccgtgggc 157
||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 76 ctgaatcacccggtggcgctgaagaaggtggaggcagagatcgaggcggccgtgggc 20
Score = 46.1 bits (23), Expect = 0.005
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 11 gacaccatgatcatggcactgtgcggg 37
|||||||||||||||||||||| ||||
Sbjct: 330 gacaccatgatcatggcactgtccggg 304
>gb|CW253790.1|CW253790 104_717_11225292_116_35111_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225292, DNA
sequence
Length = 634
Score = 145 bits (73), Expect = 8e-033
Identities = 152/177 (85%), Gaps = 1/177 (0%)
Strand = Plus / Plus
Query: 178 gacgacgtgccggggctgggctacctgcagtgcgtcatcaacgagacgctgcgcctgtac 237
|||||||||||| |||| |||||||| |||||| || ||| |||||| || || ||||||
Sbjct: 451 gacgacgtgccgcggctcggctacctccagtgcatcgtcaccgagaccctccggctgtac 510
Query: 238 ccggtggccccgctgctgctgccgcacgagtcgacggcggactgcacggtcggcggctac 297
||||||| ||| |||| ||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 511 ccggtggtgccgacgctggtgccgcacgagtccacggcggactgcacggtcggcggccac 570
Query: 298 gaagtgccccgcggcacgctgctgttcgtcacacgcgtacgccatccacagggaccc 354
| ||||| |||| ||| ||||| |||||| ||| |||||||||||||||||||||
Sbjct: 571 cacgtgccgagcgggacgatgctgctcgtca-acgtgtacgccatccacagggaccc 626
>gb|CW263276.1|CW263276 104_731_11230595_116_35213_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11230595, DNA
sequence
Length = 668
Score = 123 bits (62), Expect = 3e-026
Identities = 180/218 (82%), Gaps = 1/218 (0%)
Strand = Plus / Plus
Query: 180 cgacgtgccggggctgggctacctgcagtgcgtcatcaacgagacgctgcgcctgtaccc 239
|||||||||| | || || ||||||||||||||| ||| |||| |||| || ||||||||
Sbjct: 86 cgacgtgccgcgcctcgggtacctgcagtgcgtcgtcaccgaggcgctccggctgtaccc 145
Query: 240 ggtggccccgctgctgctgccgcacgagtcgacggcggactgcacggtcggcggctacga 299
| | ||||||||| ||||||||||||| || | |||||| ||||||||||| || |
Sbjct: 146 cgccgtgccgctgctggtgccgcacgagtccaccgtagactgctcggtcggcggccacca 205
Query: 300 agtgccccgcggcacgctgctgttcgtcacacgcgtacgccatccacagggacccggcgg 359
|| || || || ||| ||||| |||| | |||| ||||||||||| |||||||||||||
Sbjct: 206 cgtcccgcgagggacgatgctgctcgtga-acgcctacgccatccatagggacccggcgg 264
Query: 360 cgtgggaggagccggacgagttcaggccggagcggttc 397
|||||| || |||| || |||||||||||||||||||
Sbjct: 265 cgtgggcagacccggccgcgttcaggccggagcggttc 302
Score = 65.9 bits (33), Expect = 6e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 431 ccgttcgggatgggacggcgcaggtgccccggggagacgctcgctctgcggac 483
||||||||| ||||| |||||| ||||||||| ||||||||||| ||||||||
Sbjct: 360 ccgttcgggttgggaaggcgcaagtgccccggcgagacgctcgcgctgcggac 412
Score = 40.1 bits (20), Expect = 0.32
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 96 tgctgctgaaccacccggag 115
||||||||||||||||||||
Sbjct: 1 tgctgctgaaccacccggag 20
>gb|BE125962.1|BE125962 DG1_60_C08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 268
Score = 117 bits (59), Expect = 2e-024
Identities = 94/106 (88%)
Strand = Plus / Plus
Query: 14 accatgatcatggcactgtgcgggnacttgtttacagccggaacggagacgacgtcgtcc 73
||||||||||||||||| |||||| | || ||| |||||||||||||| || ||||||
Sbjct: 163 accatgatcatggcactttgcgggaatttatttggcgccggaacggagaccacatcgtcc 222
Query: 74 acgatagaatgggccatgtcgctgctgctgaaccacccggaggcgc 119
|||| |||||||||||||||||| || |||||||||||||||||||
Sbjct: 223 acgacagaatgggccatgtcgcttcttctgaaccacccggaggcgc 268
>gb|CW205469.1|CW205469 104_633_11187083_116_36925_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187083, DNA
sequence
Length = 596
Score = 113 bits (57), Expect = 3e-023
Identities = 96/109 (88%)
Strand = Plus / Minus
Query: 544 tgagatcgacatgaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggc 603
|||| |||||||| |||||||||||||||| ||||||||| ||||||||||| |||||||
Sbjct: 579 tgaggtcgacatggccgagagcggcgggctgaccatgcccagggccgtcccgctggaggc 520
Query: 604 cacctgcaagcctcgcgaagccatgcgtcatgttcttcagcagctctga 652
| |||||||| |||| ||| |||||| ||||||||||| ||||||||
Sbjct: 519 cctgtgcaagccgcgcgcagctatgcgtgatgttcttcagaagctctga 471
>gb|CW070836.1|CW070836 104_323_10591274_116_30545 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591274, DNA
sequence
Length = 654
Score = 103 bits (52), Expect = 3e-020
Identities = 94/108 (87%)
Strand = Plus / Minus
Query: 50 gccggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctgctgaaccac 109
|||||||||||||| ||||| |||||| ||||||||||||||||| ||||||||||||
Sbjct: 162 gccggaacggagaccacgtccaccacgacggaatgggccatgtcgctcctgctgaaccac 103
Query: 110 ccggaggcgctgaagaaggccgaggcagagatcgaggcggccgtgggc 157
||||||| || |||||||| |||| |||||||| || |||||||||
Sbjct: 102 ccggaggtcctcaagaaggcgcaggccgagatcgacgccgccgtgggc 55
>gb|CW070950.1|CW070950 104_323_10591324_116_30439 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591324, DNA
sequence
Length = 656
Score = 103 bits (52), Expect = 3e-020
Identities = 94/108 (87%)
Strand = Plus / Minus
Query: 50 gccggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctgctgaaccac 109
|||||||||||||| ||||| |||||| ||||||||||||||||| ||||||||||||
Sbjct: 162 gccggaacggagaccacgtccaccacgacggaatgggccatgtcgctcctgctgaaccac 103
Query: 110 ccggaggcgctgaagaaggccgaggcagagatcgaggcggccgtgggc 157
||||||| || |||||||| |||| |||||||| || |||||||||
Sbjct: 102 ccggaggtcctcaagaaggcgcaggccgagatcgacgccgccgtgggc 55
>gb|CW205470.1|CW205470 104_633_11187083_148_36926_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187083, DNA
sequence
Length = 605
Score = 103 bits (52), Expect = 3e-020
Identities = 94/108 (87%)
Strand = Plus / Plus
Query: 50 gccggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctgctgaaccac 109
|||||||||||||| ||||| |||||| ||||||||||||||||| ||||||||||||
Sbjct: 439 gccggaacggagaccacgtccaccacgacggaatgggccatgtcgctcctgctgaaccac 498
Query: 110 ccggaggcgctgaagaaggccgaggcagagatcgaggcggccgtgggc 157
||||||| || |||||||| |||| |||||||| || |||||||||
Sbjct: 499 ccggaggtcctcaagaaggcgcaggccgagatcgacgccgccgtgggc 546
>gb|CW256586.1|CW256586 104_721_11226871_116_35138_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226871, DNA
sequence
Length = 535
Score = 101 bits (51), Expect = 1e-019
Identities = 127/151 (84%), Gaps = 1/151 (0%)
Strand = Plus / Minus
Query: 247 ccgctgctgctgccgcacgagtcgacggcggactgcacggtcggcggctacgaagtgccc 306
||||||||| ||||||||||||| || | |||||| ||||||||||| || | || ||
Sbjct: 503 ccgctgctggtgccgcacgagtccaccgtagactgctcggtcggcggccaccacgtcccg 444
Query: 307 cgcggcacgctgctgttcgtcacacgcgtacgccatccacagggacccggcggcgtggga 366
|| || ||| ||||| |||| | |||| ||||||||||| |||||||||||||||||||
Sbjct: 443 cgagggacgatgctgctcgtga-acgcctacgccatccatagggacccggcggcgtgggc 385
Query: 367 ggagccggacgagttcaggccggagcggttc 397
|| |||| || |||||||||||||||||||
Sbjct: 384 agacccggccgcgttcaggccggagcggttc 354
Score = 65.9 bits (33), Expect = 6e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 431 ccgttcgggatgggacggcgcaggtgccccggggagacgctcgctctgcggac 483
||||||||| ||||| |||||| ||||||||| ||||||||||| ||||||||
Sbjct: 296 ccgttcgggttgggaaggcgcaagtgccccggcgagacgctcgcgctgcggac 244
>gb|CF430593.1|CF430593 NIT1_3_A05.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_3_A05_A002 3', mRNA sequence
Length = 531
Score = 101 bits (51), Expect = 1e-019
Identities = 127/151 (84%), Gaps = 1/151 (0%)
Strand = Plus / Plus
Query: 247 ccgctgctgctgccgcacgagtcgacggcggactgcacggtcggcggctacgaagtgccc 306
||||||||| ||||||||||||| || | |||||| ||||||||||| || | || ||
Sbjct: 27 ccgctgctggtgccgcacgagtccaccgtagactgctcggtcggcggccaccacgtcccg 86
Query: 307 cgcggcacgctgctgttcgtcacacgcgtacgccatccacagggacccggcggcgtggga 366
|| || ||| ||||| |||| | |||| ||||||||||| |||||||||||||||||||
Sbjct: 87 cgagggacgatgctgctcgtga-acgcctacgccatccatagggacccggcggcgtgggc 145
Query: 367 ggagccggacgagttcaggccggagcggttc 397
|| |||| || |||||||||||||||||||
Sbjct: 146 agacccggccgcgttcaggccggagcggttc 176
Score = 65.9 bits (33), Expect = 6e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 431 ccgttcgggatgggacggcgcaggtgccccggggagacgctcgctctgcggac 483
||||||||| ||||| |||||| ||||||||| ||||||||||| ||||||||
Sbjct: 234 ccgttcgggttgggaaggcgcaagtgccccggcgagacgctcgcgctgcggac 286
>gb|CW051043.1|CW051043 104_291_10515016_115_30196 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515016, DNA
sequence
Length = 202
Score = 93.7 bits (47), Expect = 2e-017
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 247 ccgctgctgctgccgcacgagtcgacggcggactgcacggtcggcggctacgaagtgccc 306
||||||||||||||||||||||| | || ||||||| ||||||||||||||| ||||||
Sbjct: 2 ccgctgctgctgccgcacgagtcctccgcagactgcaaggtcggcggctacgacgtgccc 61
Query: 307 cgcggcacgctgctg 321
||||||||| |||||
Sbjct: 62 cgcggcacgatgctg 76
>gb|CW428466.1|CW428466 fsbb001f141c22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f141c22, DNA
sequence
Length = 582
Score = 91.7 bits (46), Expect = 1e-016
Identities = 98/114 (85%), Gaps = 1/114 (0%)
Strand = Plus / Plus
Query: 261 gcacgagtcgacggcggactgcacggtcggcggctacgaagtgccccgcggcacgctgct 320
|||||||||| | |||||||||| ||||||||||||||| || || ||||||||| |||
Sbjct: 240 gcacgagtcgtccgcggactgcaaggtcggcggctacgacgtcccgcgcggcacggcgct 299
Query: 321 gttcgtcacacgcgtacgccatccacagggacccggcggcgtgggaggagccgg 374
| | || | ||| |||||| ||||||||||||||||| | ||||||||||||||
Sbjct: 300 gctggtga-acgtgtacgcgatccacagggacccggctgtgtgggaggagccgg 352
Score = 46.1 bits (23), Expect = 0.005
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 509 atccagtgcttccactgggacagaatcgatggcgctgagatcgacatgaccgagagcggc 568
|||||||||||||||||| |||| |||| |||| ||| | ||||||| ||| || ||
Sbjct: 486 atccagtgcttccactggagcagagtcgacggcgtggaggttgacatgagcgaaggcagc 545
Query: 569 gggctcaccatgccc 583
|| ||||||||||||
Sbjct: 546 ggactcaccatgccc 560
>gb|CW485737.1|CW485737 fsbb001f248k03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f248k03, DNA
sequence
Length = 675
Score = 91.7 bits (46), Expect = 1e-016
Identities = 98/114 (85%), Gaps = 1/114 (0%)
Strand = Plus / Plus
Query: 261 gcacgagtcgacggcggactgcacggtcggcggctacgaagtgccccgcggcacgctgct 320
|||||||||| | |||||||||| ||||||||||||||| || || ||||||||| |||
Sbjct: 7 gcacgagtcgtccgcggactgcaaggtcggcggctacgacgtcccgcgcggcacggcgct 66
Query: 321 gttcgtcacacgcgtacgccatccacagggacccggcggcgtgggaggagccgg 374
| | || | ||| |||||| ||||||||||||||||| | ||||||||||||||
Sbjct: 67 gctggtga-acgtgtacgcgatccacagggacccggctgtgtgggaggagccgg 119
Score = 46.1 bits (23), Expect = 0.005
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 509 atccagtgcttccactgggacagaatcgatggcgctgagatcgacatgaccgagagcggc 568
|||||||||||||||||| |||| |||| |||| ||| | ||||||| ||| || ||
Sbjct: 253 atccagtgcttccactggagcagagtcgacggcgtggaggttgacatgagcgaaggcagc 312
Query: 569 gggctcaccatgccc 583
|| ||||||||||||
Sbjct: 313 ggactcaccatgccc 327
>gb|CW316826.1|CW316826 104_808_11473096_148_35858_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473096, DNA
sequence
Length = 701
Score = 85.7 bits (43), Expect = 6e-015
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 50 gccggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctgctgaaccac 109
|||||||||||||| ||||| |||||| ||||||||||||||||| ||||||||||||
Sbjct: 74 gccggaacggagaccacgtccaccacgacggaatgggccatgtcgctcctgctgaaccac 15
Query: 110 ccggagg 116
|||||||
Sbjct: 14 ccggagg 8
>gb|CW393839.1|CW393839 fsbb001f081b07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f081b07, DNA
sequence
Length = 577
Score = 85.7 bits (43), Expect = 6e-015
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 553 catgaccgagagcggcgggctcaccatgccccgggccgtcccgttggaggccacctgcaa 612
|||||||| | | |||||||| ||||||||| |||||||||||||||||||||| |||||
Sbjct: 568 catgaccgcgggtggcgggctgaccatgcccagggccgtcccgttggaggccacgtgcaa 509
Query: 613 gcctcgcgaagccatgcgtcatgttct 639
|||||| | ||| ||||| |||||||
Sbjct: 508 gcctcgtgcagctatgcgcgatgttct 482
>gb|BZ779926.1|BZ779926 ii35e07.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii35e07, DNA sequence
Length = 688
Score = 83.8 bits (42), Expect = 2e-014
Identities = 60/66 (90%)
Strand = Plus / Minus
Query: 332 gcgtacgccatccacagggacccggcggcgtgggaggagccggacgagttcaggccggag 391
|||||||||||||||||||| |||||| | |||||||| ||||| |||||||||||||||
Sbjct: 327 gcgtacgccatccacagggatccggcgacatgggaggacccggaggagttcaggccggag 268
Query: 392 cggttc 397
|||||
Sbjct: 267 aggttc 262
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 199 tacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctgctgctg 258
||||| || ||| |||||| ||||||||| ||||| ||||||| || ||| |||| |||
Sbjct: 459 tacctccactgcatcatcagcgagacgcttcgcctctacccggccgcgccgatgctactg 400
Query: 259 ccgcacgag 267
|||||||||
Sbjct: 399 ccgcacgag 391
Score = 44.1 bits (22), Expect = 0.020
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 50 gccggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctgctgaaccac 109
||||| ||||||||||| || | || || |||||||| |||||||| ||||| ||||||
Sbjct: 608 gccggcacggagacgacctcaacgaccatggaatgggcaatgtcgctcctgcttaaccac 549
Query: 110 cc 111
||
Sbjct: 548 cc 547
>gb|CW188052.1|CW188052 104_607_11172812_116_36728_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11172812, DNA
sequence
Length = 667
Score = 83.8 bits (42), Expect = 2e-014
Identities = 60/66 (90%)
Strand = Plus / Minus
Query: 332 gcgtacgccatccacagggacccggcggcgtgggaggagccggacgagttcaggccggag 391
|||||||||||||||||||| |||||| | |||||||| ||||| |||||||||||||||
Sbjct: 381 gcgtacgccatccacagggatccggcgacatgggaggacccggaggagttcaggccggag 322
Query: 392 cggttc 397
|||||
Sbjct: 321 aggttc 316
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 199 tacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctgctgctg 258
||||| || ||| |||||| ||||||||| ||||| ||||||| || ||| |||| |||
Sbjct: 513 tacctccactgcatcatcagcgagacgcttcgcctctacccggccgcgccgatgctactg 454
Query: 259 ccgcacgag 267
|||||||||
Sbjct: 453 ccgcacgag 445
Score = 48.1 bits (24), Expect = 0.001
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 50 gccggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctgctgaaccac 109
||||| ||||||||||| || | || || |||||||| |||||||| ||||| ||||||
Sbjct: 663 gccggcacggagacgacctcaacgaccatggaatgggcaatgtcgctcctgcttaaccac 604
Query: 110 ccggaggcgctgaagaaggc 129
|| || | |||||| |||||
Sbjct: 603 ccagatgtgctgaaaaaggc 584
>gb|AW679544.1|AW679544 WS1_29_D01.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 556
Score = 83.8 bits (42), Expect = 2e-014
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 332 gcgtacgccatccacagggacccggcggcgtgggaggagccggacgagttcaggccggag 391
|||||||||||||||||||| |||||| | |||||||| ||||| |||||||||||||||
Sbjct: 95 gcgtacgccatccacagggatccggcgacatgggaggacccggaggagttcaggccggag 154
Query: 392 cggttc 397
|||||
Sbjct: 155 aggttc 160
>gb|BG933110.1|BG933110 WS1_29_D01.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 507
Score = 83.8 bits (42), Expect = 2e-014
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 332 gcgtacgccatccacagggacccggcggcgtgggaggagccggacgagttcaggccggag 391
|||||||||||||||||||| |||||| | |||||||| ||||| |||||||||||||||
Sbjct: 319 gcgtacgccatccacagggatccggcgacatgggaggacccggaggagttcaggccggag 378
Query: 392 cggttc 397
|||||
Sbjct: 379 aggttc 384
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 199 tacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctgctgctg 258
||||| || ||| |||||| ||||||||| ||||| ||||||| || ||| |||| |||
Sbjct: 187 tacctccactgcatcatcagcgagacgcttcgcctctacccggccgcgccgatgctactg 246
Query: 259 ccgcacgag 267
|||||||||
Sbjct: 247 ccgcacgag 255
Score = 48.1 bits (24), Expect = 0.001
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 50 gccggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctgctgaaccac 109
||||| ||||||||||| || | || || |||||||| |||||||| ||||| ||||||
Sbjct: 37 gccggcacggagacgacctcaacgaccatggaatgggcaatgtcgctcctgcttaaccac 96
Query: 110 ccggaggcgctgaagaaggc 129
|| || | |||||| |||||
Sbjct: 97 ccagatgtgctgaaaaaggc 116
>gb|CB924446.1|CB924446 ABA1_21_F08.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_21_F08_A012 3', mRNA sequence
Length = 623
Score = 83.8 bits (42), Expect = 2e-014
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 332 gcgtacgccatccacagggacccggcggcgtgggaggagccggacgagttcaggccggag 391
|||||||||||||||||||| |||||| | |||||||| ||||| |||||||||||||||
Sbjct: 96 gcgtacgccatccacagggatccggcgacatgggaggacccggaggagttcaggccggag 155
Query: 392 cggttc 397
|||||
Sbjct: 156 aggttc 161
>gb|CD205908.1|CD205908 HS1_19_B08.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_19_B08_A012 3', mRNA sequence
Length = 556
Score = 83.8 bits (42), Expect = 2e-014
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 332 gcgtacgccatccacagggacccggcggcgtgggaggagccggacgagttcaggccggag 391
|||||||||||||||||||| |||||| | |||||||| ||||| |||||||||||||||
Sbjct: 123 gcgtacgccatccacagggatccggcgacatgggaggacccggaggagttcaggccggag 182
Query: 392 cggttc 397
|||||
Sbjct: 183 aggttc 188
Score = 48.1 bits (24), Expect = 0.001
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 212 tcatcaacgagacgctgcgcctgtacccggtggccccgctgctgctgccgcacgag 267
|||||| ||||||||| ||||| ||||||| || ||| |||| ||||||||||||
Sbjct: 4 tcatcagcgagacgcttcgcctctacccggccgcgccgatgctactgccgcacgag 59
>gb|CD212860.1|CD212860 HS1_17_H04.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_17_H04_A012 3', mRNA sequence
Length = 540
Score = 83.8 bits (42), Expect = 2e-014
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 332 gcgtacgccatccacagggacccggcggcgtgggaggagccggacgagttcaggccggag 391
|||||||||||||||||||| |||||| | |||||||| ||||| |||||||||||||||
Sbjct: 161 gcgtacgccatccacagggatccggcgacatgggaggacccggaggagttcaggccggag 220
Query: 392 cggttc 397
|||||
Sbjct: 221 aggttc 226
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 199 tacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctgctgctg 258
||||| || ||| |||||| ||||||||| ||||| ||||||| || ||| |||| |||
Sbjct: 29 tacctccactgcatcatcagcgagacgcttcgcctctacccggccgcgccgatgctactg 88
Query: 259 ccgcacgag 267
|||||||||
Sbjct: 89 ccgcacgag 97
>gb|CD427023.1|CD427023 SA1_17_C08.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_17_C08_A002 3', mRNA sequence
Length = 679
Score = 83.8 bits (42), Expect = 2e-014
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 332 gcgtacgccatccacagggacccggcggcgtgggaggagccggacgagttcaggccggag 391
|||||||||||||||||||| |||||| | |||||||| ||||| |||||||||||||||
Sbjct: 253 gcgtacgccatccacagggatccggcgacatgggaggacccggaggagttcaggccggag 312
Query: 392 cggttc 397
|||||
Sbjct: 313 aggttc 318
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 199 tacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctgctgctg 258
||||| || ||| |||||| ||||||||| ||||| ||||||| || ||| |||| |||
Sbjct: 121 tacctccactgcatcatcagcgagacgcttcgcctctacccggccgcgccgatgctactg 180
Query: 259 ccgcacgag 267
|||||||||
Sbjct: 181 ccgcacgag 189
>gb|CF770824.1|CF770824 DSBF1_10_B04.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_10_B04_A010 3', mRNA sequence
Length = 576
Score = 83.8 bits (42), Expect = 2e-014
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 332 gcgtacgccatccacagggacccggcggcgtgggaggagccggacgagttcaggccggag 391
|||||||||||||||||||| |||||| | |||||||| ||||| |||||||||||||||
Sbjct: 6 gcgtacgccatccacagggatccggcgacatgggaggacccggaggagttcaggccggag 65
Query: 392 cggttc 397
|||||
Sbjct: 66 aggttc 71
>gb|CN147616.1|CN147616 WOUND1_50_G10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_50_G10_A002 5', mRNA sequence
Length = 789
Score = 83.8 bits (42), Expect = 2e-014
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 332 gcgtacgccatccacagggacccggcggcgtgggaggagccggacgagttcaggccggag 391
|||||||||||||||||||| |||||| | |||||||| ||||| |||||||||||||||
Sbjct: 444 gcgtacgccatccacagggatccggcgacatgggaggacccggaggagttcaggccggag 503
Query: 392 cggttc 397
|||||
Sbjct: 504 aggttc 509
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 199 tacctgcagtgcgtcatcaacgagacgctgcgcctgtacccggtggccccgctgctgctg 258
||||| || ||| |||||| ||||||||| ||||| ||||||| || ||| |||| |||
Sbjct: 312 tacctccactgcatcatcagcgagacgcttcgcctctacccggccgcgccgatgctactg 371
Query: 259 ccgcacgag 267
|||||||||
Sbjct: 372 ccgcacgag 380
Score = 48.1 bits (24), Expect = 0.001
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 50 gccggaacggagacgacgtcgtccacgatagaatgggccatgtcgctgctgctgaaccac 109
||||| ||||||||||| || | || || |||||||| |||||||| ||||| ||||||
Sbjct: 162 gccggcacggagacgacctcaacgaccatggaatgggcaatgtcgctcctgcttaaccac 221
Query: 110 ccggaggcgctgaagaaggc 129
|| || | |||||| |||||
Sbjct: 222 ccagatgtgctgaaaaaggc 241
>gb|CW256587.1|CW256587 104_721_11226871_148_35142_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226871, DNA
sequence
Length = 620
Score = 71.9 bits (36), Expect = 9e-011
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 80 gaatgggccatgtcgctgctgctgaaccacccggag 115
||||||||||||||||||||||||||||||||||||
Sbjct: 459 gaatgggccatgtcgctgctgctgaaccacccggag 494
Score = 48.1 bits (24), Expect = 0.001
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 180 cgacgtgccggggctgggctacctgcagtgcgtcatcaacgagacgctgcgcctgtaccc 239
|||||||||| | || || ||||||||||||||| ||| |||| |||| || ||||||||
Sbjct: 560 cgacgtgccgcgcctcgggtacctgcagtgcgtcgtcaccgaggcgctccggctgtaccc 619
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 290,798
Number of Sequences: 832831
Number of extensions: 290798
Number of successful extensions: 81244
Number of sequences better than 0.5: 174
Number of HSP's better than 0.5 without gapping: 173
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 80886
Number of HSP's gapped (non-prelim): 328
length of query: 834
length of database: 491,359,669
effective HSP length: 20
effective length of query: 814
effective length of database: 474,703,049
effective search space: 386408281886
effective search space used: 386408281886
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)