BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521865.2.1
(638 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW379734.1|CW379734 fsbb001f059c14f0 Sorghum methylation... 841 0.0
gb|BM328918.1|BM328918 PIC1_31_C01.g1_A002 Pathogen-infecte... 813 0.0
gb|BM328644.1|BM328644 PIC1_24_G06.g1_A002 Pathogen-infecte... 807 0.0
gb|CW448133.1|CW448133 fsbb001f181j18f0 Sorghum methylation... 795 0.0
gb|BI075102.1|BI075102 IP1_19_G10.g1_A002 Immature pannicle... 795 0.0
gb|BG049329.1|BG049329 OV1_18_E11.g1_A002 Ovary 1 (OV1) Sor... 773 0.0
gb|CN135824.1|CN135824 OX1_39_D11.b1_A002 Oxidatively-stres... 761 0.0
gb|BM328738.1|BM328738 PIC1_26_A02.g1_A002 Pathogen-infecte... 476 e-132
gb|AW282841.2|AW282841 LG1_305_F08.g1_A002 Light Grown 1 (L... 305 3e-081
gb|CD210669.1|CD210669 HS1_49_C03.b1_A012 Heat-shocked seed... 125 5e-027
gb|CD219527.1|CD219527 CCC1_57_C08.b1_A007 Callus culture/c... 117 1e-024
gb|CD221819.1|CD221819 CCC1_71_E09.b1_A007 Callus culture/c... 117 1e-024
gb|CD424085.1|CD424085 SA1_3_E09.b1_A002 Salicylic acid-tre... 117 1e-024
gb|CX616870.1|CX616870 GABR1_30_H12.b1_A002 GA- or brassino... 117 1e-024
gb|BM324237.1|BM324237 PIC1_26_A02.b1_A002 Pathogen-infecte... 82 7e-014
>gb|CW379734.1|CW379734 fsbb001f059c14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f059c14, DNA
sequence
Length = 722
Score = 841 bits (424), Expect = 0.0
Identities = 522/554 (94%), Gaps = 8/554 (1%)
Strand = Plus / Minus
Query: 1 gctagctactggagcacatgttgttggcaatgtgctggtgcatgagagcgccaagattgg 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gctagctactggaacacatgttgttggcaatgtgctggtgcatgagagcgccaagattgg 531
Query: 61 agaaggttgtctgattggtcctgatgtcgccattggacctgggtgtgttgtggaggacgg 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 530 agaaggttgtctgattggtcctgatgtcgccattggacctggatgtgttgtggaggatgg 471
Query: 121 cgtgaggctttcccgctgcactgtcatgcgcggcgtgcgtatcaagaagcatgcttgcat 180
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 470 cgtgaggctttcccgctgcactgtcatgcgtggtgtgcgcatcaagaagcatgcttgcat 411
Query: 181 ctcaaacagcattatcggctggcactcaactgttggtcaatgggcacggatagagaatat 240
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 410 ctcaaacagcattatcgggtggcactcaactgttggaaaatgggcacggatagagaatat 351
Query: 241 gactatcctgggggaggatgttcatgtgtgtgatgaggtgtacagcaatggcggtgttgt 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 350 gactatcctgggggaggatgttcatgtgtgtgatgaggtatacagcaatggcggtgttgt 291
Query: 301 tctcccacataaagagatcaagtcaagcattctgaagcctgagatcgtcatgtgagctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tctcccacataaagagatcaagtcaagcattctgaagcctgagatcgtcatgtgagctct 231
Query: 361 ccagttttagctacagtacattcttaacttctttgacgaagggaggattgcagatcccct 420
||||||||||| ||||||||||||||| ||||||||| ||||||||||| | |||||||
Sbjct: 230 ccagttttagccacagtacattcttaagttctttgacaaagggaggatttgatatcccct 171
Query: 421 tttataaacgatattgcttggtatcttcgatctaatgcaaacagcttcatacttg----- 475
||| ||||||||||||| |||||||||||| ||||||||||||||||||||| ||
Sbjct: 170 tttgtaaacgatattgcctggtatcttcgacctaatgcaaacagcttcatacatgttctc 111
Query: 476 --gtctcttgttaaactattgacaatgtat-cttgttttttgttgaaaagtttagtactt 532
| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 110 ttgactcttgttaaactattgacaatgtatccttgttctttgttgaaaagtttagtactt 51
Query: 533 gagtgtcaatcata 546
|||||||| ||||
Sbjct: 50 tagtgtcaaccata 37
Score = 89.7 bits (45), Expect = 3e-016
Identities = 55/57 (96%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 563 aaactattgacaatgtatc-ttgttctttgttgaaaagtttagtacttgagtgtcaa 618
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 98 aaactattgacaatgtatccttgttctttgttgaaaagtttagtactttagtgtcaa 42
>gb|BM328918.1|BM328918 PIC1_31_C01.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 584
Score = 813 bits (410), Expect = 0.0
Identities = 508/540 (94%), Gaps = 8/540 (1%)
Strand = Plus / Plus
Query: 1 gctagctactggagcacatgttgttggcaatgtgctggtgcatgagagcgccaagattgg 60
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 39 gctagctactggaacacatgttgtcggcaatgtgctggtgcatgagagcgccaagattgg 98
Query: 61 agaaggttgtctgattggtcctgatgtcgccattggacctgggtgtgttgtggaggacgg 120
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 99 agaaggtcgtctgattggtcctgatgtcgccattggacctggatgtgttgtggaggatgg 158
Query: 121 cgtgaggctttcccgctgcactgtcatgcgcggcgtgcgtatcaagaagcatgcttgcat 180
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 159 cgtgaggctttcccgctgcactgtcatgcgtggtgtgcgcatcaagaagcatgcttgcat 218
Query: 181 ctcaaacagcattatcggctggcactcaactgttggtcaatgggcacggatagagaatat 240
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 219 ctcaaacagcattatcgggtggcactcaactgttggaaaatgggcacggatagagaatat 278
Query: 241 gactatcctgggggaggatgttcatgtgtgtgatgaggtgtacagcaatggcggtgttgt 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 279 gactatcctgggggaggatgttcatgtgtgtgatgaggtatacagcaatggcggtgttgt 338
Query: 301 tctcccacataaagagatcaagtcaagcattctgaagcctgagatcgtcatgtgagctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tctcccacataaagagatcaagtcaagcattctgaagcctgagatcgtcatgtgagctct 398
Query: 361 ccagttttagctacagtacattcttaacttctttgacgaagggaggattgcagatcccct 420
||||||||||| ||||||||||||||| ||||||||| ||||||||||| | |||||||
Sbjct: 399 ccagttttagccacagtacattcttaagttctttgacaaagggaggatttgatatcccct 458
Query: 421 tttataaacgatattgcttggtatcttcgatctaatgcaaacagcttcatacttg----- 475
||| ||||||||||||| |||||||||||| ||||||||||||||||||||| ||
Sbjct: 459 tttgtaaacgatattgcctggtatcttcgacctaatgcaaacagcttcatacatgttctc 518
Query: 476 --gtctcttgttaaactattgacaatgtat-cttgttttttgttgaaaagtttagtactt 532
| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 519 ttgactcttgttaaactattgacaatgtatccttgttctttgttgaaaagtttagtactt 578
Score = 79.8 bits (40), Expect = 3e-013
Identities = 47/48 (97%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 563 aaactattgacaatgtatc-ttgttctttgttgaaaagtttagtactt 609
||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 531 aaactattgacaatgtatccttgttctttgttgaaaagtttagtactt 578
>gb|BM328644.1|BM328644 PIC1_24_G06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 585
Score = 807 bits (407), Expect = 0.0
Identities = 514/549 (93%), Gaps = 8/549 (1%)
Strand = Plus / Plus
Query: 1 gctagctactggagcacatgttgttggcaatgtgctggtgcatgagagcgccaagattgg 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37 gctagctactggaacacatgttgttggcaatgtgctggtgcatgagagcgccaagattgg 96
Query: 61 agaaggttgtctgattggtcctgatgtcgccattggacctgggtgtgttgtggaggacgg 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 97 agaaggttgtctgattggtcctgatgtcgccattggacctggatgtgttgtggaggatgg 156
Query: 121 cgtgaggctttcccgctgcactgtcatgcgcggcgtgcgtatcaagaagcatgcttgcat 180
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 157 cgtgaggctttcccgctgcactgtcatgcgtggtgtgcgcatcaagaagcatgcttgcat 216
Query: 181 ctcaaacagcattatcggctggcactcaactgttggtcaatgggcacggatagagaatat 240
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 217 ctcaaacagcattatcgggtggcactcaactgttggaaaatgggcacggatagagaatat 276
Query: 241 gactatcctgggggaggatgttcatgtgtgtgatgaggtgtacagcaatggcggtgttgt 300
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 277 gactatcctgggggaggatgttaatgtgtgtgatgaggtatacagcaatggcggtgttgt 336
Query: 301 tctcccacataaagagatcaagtcaagcattctgaagcctgagatcgtcatgtgagctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tctcccacataaagagatcaagtcaagcattctgaagcctgagatcgtcatgtgagctct 396
Query: 361 ccagttttagctacagtacattcttaacttctttgacgaagggaggattgcagatcccct 420
||||||||||| ||||||||||||||| ||||||||| ||||||||||| | |||||||
Sbjct: 397 ccagttttagccacagtacattcttaagttctttgacaaagggaggatttgatatcccct 456
Query: 421 tttataaacgatattgcttggtatcttcgatctaatgcaaacagcttcatacttg----- 475
||| ||||||||||||| |||||||||||| ||||||||||||||||||||| ||
Sbjct: 457 tttgtaaacgatattgcctggtatcttcgacctaatgcaaacagcttcatacatgttctc 516
Query: 476 --gtctcttgttaaactattgacaatgtat-cttgttttttgttgaaaagtttagtactt 532
| |||||||||||||||||||||||||| |||||| ||||| | | ||||||||||||
Sbjct: 517 ttgactcttgttaaactattgacaatgtatccttgttctttgtgggatagtttagtactt 576
Query: 533 gagtgtcaa 541
||||||||
Sbjct: 577 tagtgtcaa 585
Score = 65.9 bits (33), Expect = 4e-009
Identities = 52/57 (91%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 563 aaactattgacaatgtatc-ttgttctttgttgaaaagtttagtacttgagtgtcaa 618
||||||||||||||||||| ||||||||||| | | |||||||||||| ||||||||
Sbjct: 529 aaactattgacaatgtatccttgttctttgtgggatagtttagtactttagtgtcaa 585
>gb|CW448133.1|CW448133 fsbb001f181j18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f181j18, DNA
sequence
Length = 524
Score = 795 bits (401), Expect = 0.0
Identities = 483/511 (94%), Gaps = 7/511 (1%)
Strand = Plus / Minus
Query: 1 gctagctactggagcacatgttgttggcaatgtgctggtgcatgagagcgccaagattgg 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gctagctactggaacacatgttgttggcaatgtgctggtgcatgagagcgccaagattgg 460
Query: 61 agaaggttgtctgattggtcctgatgtcgccattggacctgggtgtgttgtggaggacgg 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 459 agaaggttgtctgattggtcctgatgtcgccattggacctggatgtgttgtggaggatgg 400
Query: 121 cgtgaggctttcccgctgcactgtcatgcgcggcgtgcgtatcaagaagcatgcttgcat 180
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 399 cgtgaggctttcccgctgcactgtcatgcgtggtgtgcgcatcaagaagcatgcttgcat 340
Query: 181 ctcaaacagcattatcggctggcactcaactgttggtcaatgggcacggatagagaatat 240
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 339 ctcaaacagcattatcgggtggcactcaactgttggaaaatgggcacggatagagaatat 280
Query: 241 gactatcctgggggaggatgttcatgtgtgtgatgaggtgtacagcaatggcggtgttgt 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 279 gactatcctgggggaggatgttcatgtgtgtgatgaggtatacagcaatggcggtgttgt 220
Query: 301 tctcccacataaagagatcaagtcaagcattctgaagcctgagatcgtcatgtgagctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tctcccacataaagagatcaagtcaagcattctgaagcctgagatcgtcatgtgagctct 160
Query: 361 ccagttttagctacagtacattcttaacttctttgacgaagggaggattgcagatcccct 420
||||||||||| ||||||||||||||| ||||||||| ||||||||||| | |||||||
Sbjct: 159 ccagttttagccacagtacattcttaagttctttgacaaagggaggatttgatatcccct 100
Query: 421 tttataaacgatattgcttggtatcttcgatctaatgcaaacagcttcatacttg----- 475
||| ||||||||||||| |||||||||||| ||||||||||||||||||||| ||
Sbjct: 99 tttgtaaacgatattgcctggtatcttcgacctaatgcaaacagcttcatacatgttctc 40
Query: 476 --gtctcttgttaaactattgacaatgtatc 504
| |||||||||||||||||||||||||||
Sbjct: 39 ttgactcttgttaaactattgacaatgtatc 9
>gb|BI075102.1|BI075102 IP1_19_G10.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 654
Score = 795 bits (401), Expect = 0.0
Identities = 483/511 (94%), Gaps = 7/511 (1%)
Strand = Plus / Plus
Query: 1 gctagctactggagcacatgttgttggcaatgtgctggtgcatgagagcgccaagattgg 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gctagctactggaacacatgttgttggcaatgtgctggtgcatgagagcgccaagattgg 190
Query: 61 agaaggttgtctgattggtcctgatgtcgccattggacctgggtgtgttgtggaggacgg 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 191 agaaggttgtctgattggtcctgatgtcgccattggacctggatgtgttgtggaggatgg 250
Query: 121 cgtgaggctttcccgctgcactgtcatgcgcggcgtgcgtatcaagaagcatgcttgcat 180
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 251 cgtgaggctttcccgctgcactgtcatgcgtggtgtgcgcatcaagaagcatgcttgcat 310
Query: 181 ctcaaacagcattatcggctggcactcaactgttggtcaatgggcacggatagagaatat 240
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 311 ctcaaacagcattatcgggtggcactcaactgttggaaaatgggcacggatagagaatat 370
Query: 241 gactatcctgggggaggatgttcatgtgtgtgatgaggtgtacagcaatggcggtgttgt 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 371 gactatcctgggggaggatgttcatgtgtgtgatgaggtatacagcaatggcggtgttgt 430
Query: 301 tctcccacataaagagatcaagtcaagcattctgaagcctgagatcgtcatgtgagctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tctcccacataaagagatcaagtcaagcattctgaagcctgagatcgtcatgtgagctct 490
Query: 361 ccagttttagctacagtacattcttaacttctttgacgaagggaggattgcagatcccct 420
||||||||||| ||||||||||||||| ||||||||| ||||||||||| | |||||||
Sbjct: 491 ccagttttagccacagtacattcttaagttctttgacaaagggaggatttgatatcccct 550
Query: 421 tttataaacgatattgcttggtatcttcgatctaatgcaaacagcttcatacttg----- 475
||| ||||||||||||| |||||||||||| ||||||||||||||||||||| ||
Sbjct: 551 tttgtaaacgatattgcctggtatcttcgacctaatgcaaacagcttcatacatgttctc 610
Query: 476 --gtctcttgttaaactattgacaatgtatc 504
| |||||||||||||||||||||||||||
Sbjct: 611 ttgactcttgttaaactattgacaatgtatc 641
Score = 46.1 bits (23), Expect = 0.004
Identities = 30/31 (96%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 563 aaactattgacaatgtat-cttgttctttgt 592
|||||||||||||||||| ||||||||||||
Sbjct: 623 aaactattgacaatgtatccttgttctttgt 653
>gb|BG049329.1|BG049329 OV1_18_E11.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 694
Score = 773 bits (390), Expect = 0.0
Identities = 460/482 (95%), Gaps = 1/482 (0%)
Strand = Plus / Plus
Query: 1 gctagctactggagcacatgttgttggcaatgtgctggtgcatgagagcgccaagattgg 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gctagctactggaacacatgttgttggcaatgtgctggtgcatgagagcgccaagattgg 272
Query: 61 agaaggttgtctgattggtcctgatgtcgccattggacctgggtgtgttgtggaggacgg 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 273 agaaggttgtctgattggtcctgatgtcgccattggacctggatgtgttgtggaggatgg 332
Query: 121 cgtgaggctttcccgctgcactgtcatgcgcggcgtgcgtatcaagaagcatgcttgcat 180
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 333 cgtgaggctttcccgctgcactgtcatgcgtggtgtgcgcatcaagaagcatgcttgcat 392
Query: 181 ctcaaacagcattatcggctggcactcaactgttggtcaatgggcacggatagagaatat 240
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 393 ctcaaacagcattatcgggtggcactcaactgttggaaaatgggcacggatagagaatat 452
Query: 241 gactatcctgggggaggatgttcatgtgtgtgatgaggtgtacagcaatggcggtgttgt 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 453 gactatcctgggggaggatgttcatgtgtgtgatgaggtatacagcaatggcggtgttgt 512
Query: 301 tctcccacataaagagatcaagtcaagcattctgaagcctgagatcgtcatgtgagctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tctcccacataaagagatcaagtcaagcattctgaagcctgagatcgtcatgtgagctct 572
Query: 361 ccagttttagctacagtacattcttaacttctttgacgaagggaggattgcagatcccct 420
||||||||||| ||||||||||||||| ||||||||| ||||||||||| | |||||||
Sbjct: 573 ccagttttagccacagtacattcttaagttctttgacaaagggaggatttgatatcccct 632
Query: 421 tttataaacgatattgcttggtatcttcga-tctaatgcaaacagcttcatacttggtct 479
||| ||||||||||||| |||||||||||| ||||||||||||||||||||| || |||
Sbjct: 633 tttgtaaacgatattgcctggtatcttcgaccctaatgcaaacagcttcatacatgttct 692
Query: 480 ct 481
||
Sbjct: 693 ct 694
>gb|CN135824.1|CN135824 OX1_39_D11.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_39_D11_A002 3', mRNA sequence
Length = 763
Score = 761 bits (384), Expect = 0.0
Identities = 447/468 (95%)
Strand = Plus / Plus
Query: 1 gctagctactggagcacatgttgttggcaatgtgctggtgcatgagagcgccaagattgg 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gctagctactggaacacatgttgttggcaatgtgctggtgcatgagagcgccaagattgg 355
Query: 61 agaaggttgtctgattggtcctgatgtcgccattggacctgggtgtgttgtggaggacgg 120
||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 356 agaagtttgtctgattggtcctgaggtcgccattggacctggatgtgttgtggaggatgg 415
Query: 121 cgtgaggctttcccgctgcactgtcatgcgcggcgtgcgtatcaagaagcatgcttgcat 180
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 416 cgtgaggctttcccgctgcactgtcatgcgtggtgtgcgcatcaagaagcatgcttgcat 475
Query: 181 ctcaaacagcattatcggctggcactcaactgttggtcaatgggcacggatagagaatat 240
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 476 ctcaaacagcattatcgggtggcactcaactgttggaaaatgggcacggatagagaatat 535
Query: 241 gactatcctgggggaggatgttcatgtgtgtgatgaggtgtacagcaatggcggtgttgt 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 536 gactatcctgggggaggatgttcatgtgtgtgatgaggtatacagcaatggcggtgttgt 595
Query: 301 tctcccacataaagagatcaagtcaagcattctgaagcctgagatcgtcatgtgagctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tctcccacataaagagatcaagtcaagcattctgaagcctgagatcgtcatgtgagctct 655
Query: 361 ccagttttagctacagtacattcttaacttctttgacgaagggaggattgcagatcccct 420
||||||||||| ||||||||||||||| ||||||||| ||||||||||| | |||||||
Sbjct: 656 ccagttttagccacagtacattcttaagttctttgacaaagggaggatttgatatcccct 715
Query: 421 tttataaacgatattgcttggtatcttcgatctaatgcaaacagcttc 468
||| ||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 716 tttgtaaacgatattgcctggtatcttcgacctaatgcaaacagcttc 763
>gb|BM328738.1|BM328738 PIC1_26_A02.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 575
Score = 476 bits (240), Expect = e-132
Identities = 311/334 (93%), Gaps = 8/334 (2%)
Strand = Plus / Plus
Query: 221 tgggcacggatagagaatatgactatcctgggggaggatgttcatgtgtgtgatgaggtg 280
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgggcacggatagagaatatgactatcctgggggaggatgttcatgtgtgtgatgaggta 60
Query: 281 tacagcaatggcggtgttgttctcccacataaagagatcaagtcaagcattctgaagcct 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tacagcaatggcggtgttgttctcccacataaagagatcaagtcaagcattctgaagcct 120
Query: 341 gagatcgtcatgtgagctctccagttttagctacagtacattcttaacttctttgacgaa 400
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||
Sbjct: 121 gagatcgtcatgtgagctctccagttttagccacagtacattcttaagttctttgacaaa 180
Query: 401 gggaggattgcagatccccttttataaacgatattgcttggtatcttcgatctaatgcaa 460
||||||||| | |||||||||| ||||||||||||| |||||||||||| |||||||||
Sbjct: 181 gggaggatttgatatccccttttgtaaacgatattgcctggtatcttcgacctaatgcaa 240
Query: 461 acagcttcatacttg-------gtctcttgttaaactattgacaatgtat-cttgttttt 512
|||||||||||| || | |||||||||||||||||||||||||| |||||| ||
Sbjct: 241 acagcttcatacatgttctcttgactcttgttaaactattgacaatgtatccttgttctt 300
Query: 513 tgttgaaaagtttagtacttgagtgtcaatcata 546
|||||||||||||||||||| |||||||| ||||
Sbjct: 301 tgttgaaaagtttagtactttagtgtcaaccata 334
Score = 89.7 bits (45), Expect = 3e-016
Identities = 55/57 (96%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 563 aaactattgacaatgtatc-ttgttctttgttgaaaagtttagtacttgagtgtcaa 618
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 273 aaactattgacaatgtatccttgttctttgttgaaaagtttagtactttagtgtcaa 329
>gb|AW282841.2|AW282841 LG1_305_F08.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 498
Score = 305 bits (154), Expect = 3e-081
Identities = 222/244 (90%), Gaps = 8/244 (3%)
Strand = Plus / Plus
Query: 311 aaagagatcaagtcaagcattctgaagcctgagatcgtcatgtgagctctccagttttag 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagagatcaagtcaagcattctgaagcctgagatcgtcatgtgagctctccagttttag 60
Query: 371 ctacagtacattcttaacttctttgacgaagggaggattgcagatccccttttataaacg 430
| ||||||||||||||| ||||||||| ||||||||||| | |||||||||| ||||||
Sbjct: 61 ccacagtacattcttaagttctttgacaaagggaggatttgatatccccttttgtaaacg 120
Query: 431 atattgcttggtatcttcgatctaatgcaaacagcttcatacttg-------gtctcttg 483
||||||| |||||||||||| ||||||||||||||||||||| || | ||||||
Sbjct: 121 atattgcctggtatcttcgacctaatgcaaacagcttcatacatgttctcttgactcttg 180
Query: 484 ttaaactattgacaatgtat-cttgttttttgttgaaaagtttagtacttgagtgtcaat 542
|||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||
Sbjct: 181 ttaaactattgacaatgtatccttgttctttgttgaaaagtttagtactttagtgtcaac 240
Query: 543 cata 546
||||
Sbjct: 241 cata 244
Score = 89.7 bits (45), Expect = 3e-016
Identities = 55/57 (96%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 563 aaactattgacaatgtatc-ttgttctttgttgaaaagtttagtacttgagtgtcaa 618
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 183 aaactattgacaatgtatccttgttctttgttgaaaagtttagtactttagtgtcaa 239
>gb|CD210669.1|CD210669 HS1_49_C03.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_49_C03_A012 3', mRNA sequence
Length = 589
Score = 125 bits (63), Expect = 5e-027
Identities = 207/255 (81%)
Strand = Plus / Plus
Query: 101 gggtgtgttgtggaggacggcgtgaggctttcccgctgcactgtcatgcgcggcgtgcgt 160
||||| || ||||||| ||| ||| |||| ||||||||||| ||||||||||||| |||
Sbjct: 93 gggtgcgtagtggaggccggggtgcggctgtcccgctgcaccgtcatgcgcggcgcgcgc 152
Query: 161 atcaagaagcatgcttgcatctcaaacagcattatcggctggcactcaactgttggtcaa 220
| ||| |||| || ||| |||| | |||||| ||||| |||||||| || ||||| |
Sbjct: 153 gtgaagcagcacgcctgcgtctccagcagcatcatcggatggcactccaccgttggaaag 212
Query: 221 tgggcacggatagagaatatgactatcctgggggaggatgttcatgtgtgtgatgaggtg 280
|||||||| | ||||| ||||| ||||| |||||||| || || || ||||| ||| |
Sbjct: 213 tgggcacgcgtggagaacatgaccatccttggggaggacgtgcacgtctgtgacgagatc 272
Query: 281 tacagcaatggcggtgttgttctcccacataaagagatcaagtcaagcattctgaagcct 340
|||||||| ||||| || || ||||| || || ||||||||||| ||||| || |||||
Sbjct: 273 tacagcaacggcggcgtcgtgctcccgcacaaggagatcaagtccagcatcctcaagccc 332
Query: 341 gagatcgtcatgtga 355
|||||||||||||||
Sbjct: 333 gagatcgtcatgtga 347
>gb|CD219527.1|CD219527 CCC1_57_C08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_57_C08_A007 3', mRNA sequence
Length = 630
Score = 117 bits (59), Expect = 1e-024
Identities = 206/255 (80%)
Strand = Plus / Plus
Query: 101 gggtgtgttgtggaggacggcgtgaggctttcccgctgcactgtcatgcgcggcgtgcgt 160
||||| || ||||||| ||| ||| |||| ||||||||||| ||||||||||||| |||
Sbjct: 141 gggtgcgtagtggaggccggggtgcggctgtcccgctgcaccgtcatgcgcggcgcgcgc 200
Query: 161 atcaagaagcatgcttgcatctcaaacagcattatcggctggcactcaactgttggtcaa 220
| ||| |||| || ||| |||| | |||||| ||||| |||||||| || ||||| |
Sbjct: 201 gtgaagcagcacgcctgcgtctccagcagcatcatcggatggcactccaccgttggaaag 260
Query: 221 tgggcacggatagagaatatgactatcctgggggaggatgttcatgtgtgtgatgaggtg 280
|||||||| | ||||| ||||| ||||| |||||||| || || || || || ||| |
Sbjct: 261 tgggcacgcgtggagaacatgaccatccttggggaggacgtgcacgtctgcgacgagatc 320
Query: 281 tacagcaatggcggtgttgttctcccacataaagagatcaagtcaagcattctgaagcct 340
|||||||| ||||| || || ||||| || || ||||||||||| ||||| || |||||
Sbjct: 321 tacagcaacggcggcgtcgtgctcccgcacaaggagatcaagtccagcatcctcaagccc 380
Query: 341 gagatcgtcatgtga 355
|||||||||||||||
Sbjct: 381 gagatcgtcatgtga 395
>gb|CD221819.1|CD221819 CCC1_71_E09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_71_E09_A007 3', mRNA sequence
Length = 604
Score = 117 bits (59), Expect = 1e-024
Identities = 206/255 (80%)
Strand = Plus / Plus
Query: 101 gggtgtgttgtggaggacggcgtgaggctttcccgctgcactgtcatgcgcggcgtgcgt 160
||||| || ||||||| ||| ||| |||| ||||||||||| ||||||||||||| |||
Sbjct: 77 gggtgcgtagtggaggccggggtgcggctgtcccgctgcaccgtcatgcgcggcgcgcgc 136
Query: 161 atcaagaagcatgcttgcatctcaaacagcattatcggctggcactcaactgttggtcaa 220
| ||| |||| || ||| |||| | |||||| ||||| |||||||| || ||||| |
Sbjct: 137 gtgaagcagcacgcctgcgtctccagcagcatcatcggatggcactccaccgttggaaag 196
Query: 221 tgggcacggatagagaatatgactatcctgggggaggatgttcatgtgtgtgatgaggtg 280
|||||||| | ||||| ||||| ||||| |||||||| || || || || || ||| |
Sbjct: 197 tgggcacgcgtggagaacatgaccatccttggggaggacgtgcacgtctgcgacgagatc 256
Query: 281 tacagcaatggcggtgttgttctcccacataaagagatcaagtcaagcattctgaagcct 340
|||||||| ||||| || || ||||| || || ||||||||||| ||||| || |||||
Sbjct: 257 tacagcaacggcggcgtcgtgctcccgcacaaggagatcaagtccagcatcctcaagccc 316
Query: 341 gagatcgtcatgtga 355
|||||||||||||||
Sbjct: 317 gagatcgtcatgtga 331
>gb|CD424085.1|CD424085 SA1_3_E09.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_3_E09_A002 3', mRNA sequence
Length = 634
Score = 117 bits (59), Expect = 1e-024
Identities = 206/255 (80%)
Strand = Plus / Plus
Query: 101 gggtgtgttgtggaggacggcgtgaggctttcccgctgcactgtcatgcgcggcgtgcgt 160
||||| || ||||||| ||| ||| |||| ||||||||||| ||||||||||||| |||
Sbjct: 135 gggtgcgtagtggaggccggggtgcggctgtcccgctgcaccgtcatgcgcggcgcgcgc 194
Query: 161 atcaagaagcatgcttgcatctcaaacagcattatcggctggcactcaactgttggtcaa 220
| ||| |||| || ||| |||| | |||||| ||||| |||||||| || ||||| |
Sbjct: 195 gtgaagcagcacgcctgcgtctccagcagcatcatcggatggcactccaccgttggaaag 254
Query: 221 tgggcacggatagagaatatgactatcctgggggaggatgttcatgtgtgtgatgaggtg 280
|||||||| | ||||| ||||| ||||| |||||||| || || || || || ||| |
Sbjct: 255 tgggcacgcgtggagaacatgaccatccttggggaggacgtgcacgtctgcgacgagatc 314
Query: 281 tacagcaatggcggtgttgttctcccacataaagagatcaagtcaagcattctgaagcct 340
|||||||| ||||| || || ||||| || || ||||||||||| ||||| || |||||
Sbjct: 315 tacagcaacggcggcgtcgtgctcccgcacaaggagatcaagtccagcatcctcaagccc 374
Query: 341 gagatcgtcatgtga 355
|||||||||||||||
Sbjct: 375 gagatcgtcatgtga 389
>gb|CX616870.1|CX616870 GABR1_30_H12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_30_H12_A002 3', mRNA sequence
Length = 771
Score = 117 bits (59), Expect = 1e-024
Identities = 206/255 (80%)
Strand = Plus / Plus
Query: 101 gggtgtgttgtggaggacggcgtgaggctttcccgctgcactgtcatgcgcggcgtgcgt 160
||||| || ||||||| ||| ||| |||| ||||||||||| ||||||||||||| |||
Sbjct: 281 gggtgcgtagtggaggccggggtgcggctgtcccgctgcaccgtcatgcgcggcgcgcgc 340
Query: 161 atcaagaagcatgcttgcatctcaaacagcattatcggctggcactcaactgttggtcaa 220
| ||| |||| || ||| |||| | |||||| ||||| |||||||| || ||||| |
Sbjct: 341 gtgaagcagcacgcctgcgtctccagcagcatcatcggatggcactccaccgttggaaag 400
Query: 221 tgggcacggatagagaatatgactatcctgggggaggatgttcatgtgtgtgatgaggtg 280
|||||||| | ||||| ||||| ||||| |||||||| || || || || || ||| |
Sbjct: 401 tgggcacgcgtggagaacatgaccatccttggggaggacgtgcacgtctgcgacgagatc 460
Query: 281 tacagcaatggcggtgttgttctcccacataaagagatcaagtcaagcattctgaagcct 340
|||||||| ||||| || || ||||| || || ||||||||||| ||||| || |||||
Sbjct: 461 tacagcaacggcggcgtcgtgctcccgcacaaggagatcaagtccagcatcctcaagccc 520
Query: 341 gagatcgtcatgtga 355
|||||||||||||||
Sbjct: 521 gagatcgtcatgtga 535
>gb|BM324237.1|BM324237 PIC1_26_A02.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 524
Score = 81.8 bits (41), Expect = 7e-014
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 1 gctagctactggagcacatgttgttggcaatgtgctggtgcatga 45
||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 480 gctagctactggaacacatgttgttggcaatgtgctggtgcatga 524
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 166,619
Number of Sequences: 832831
Number of extensions: 166619
Number of successful extensions: 44314
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44268
Number of HSP's gapped (non-prelim): 34
length of query: 638
length of database: 491,359,669
effective HSP length: 19
effective length of query: 619
effective length of database: 475,535,880
effective search space: 294356709720
effective search space used: 294356709720
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)