BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521641.2.1
(594 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW398345.1|CW398345 fsbb001f087l21f0 Sorghum methylation... 462 e-128
gb|CW398346.1|CW398346 fsbb001f087l21k0 Sorghum methylation... 462 e-128
gb|CW048701.1|CW048701 104_287_10513575_115_30213 Sorghum m... 198 4e-049
gb|CW353678.1|CW353678 fsbb001f016i12k0 Sorghum methylation... 80 3e-013
gb|CW033055.1|CW033055 104_262_10501739_115_30362 Sorghum m... 78 1e-012
gb|CW420858.1|CW420858 fsbb001f128g08k0 Sorghum methylation... 72 6e-011
gb|CD225907.1|CD225907 CCC1_42_G11.b1_A007 Callus culture/c... 70 3e-010
gb|CL182230.1|CL182230 104_393_10897285_116_31922_277 Sorgh... 66 4e-009
gb|CL187169.1|CL187169 104_402_10900699_116_32436_072 Sorgh... 66 4e-009
gb|CW046815.1|CW046815 104_284_10512366_115_30220 Sorghum m... 66 4e-009
gb|CW339974.1|CW339974 104_840_11485555_116_36138_066 Sorgh... 66 4e-009
gb|CW339975.1|CW339975 104_840_11485555_148_36139_066 Sorgh... 66 4e-009
gb|CW495728.1|CW495728 fsbb001f287k03f0 Sorghum methylation... 66 4e-009
gb|CW457121.1|CW457121 fsbb001f202m15k0 Sorghum methylation... 64 2e-008
gb|CW096195.1|CW096195 104_461_11001758_148_34329_051 Sorgh... 50 2e-004
gb|CW495626.1|CW495626 fsbb001f287h17k0 Sorghum methylation... 44 0.014
gb|CW337396.1|CW337396 104_837_11484141_116_36118_093 Sorgh... 40 0.23
gb|CD424836.1|CD424836 SA1_7_A12.g1_A002 Salicylic acid-tre... 40 0.23
>gb|CW398345.1|CW398345 fsbb001f087l21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f087l21, DNA
sequence
Length = 759
Score = 462 bits (233), Expect = e-128
Identities = 278/293 (94%)
Strand = Plus / Plus
Query: 302 tagagctggccgtaggagtgcgcgaggtaggcgagcgcgccgacgagcggcgcgttgatg 361
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tagagctggccgtacgaatgcgcgaggtaggcgagcgcgccgacgagcggcgcgttgatg 277
Query: 362 taggtggccggctccgagtgctcgtggtcgttccgctcgtcggggaacctgtcctgcatg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 taggtggccggctccgagtgctcgtggtcgttccgctcgtcggggaacctgtcctgcatg 337
Query: 422 tcgggtcccccgacgacggcaccgacgagcaggttgggattggccccacccgcgtacagc 481
|||||||| ||||||||||| |||||||||| ||| || |||||||| ||||||||||||
Sbjct: 338 tcgggtccgccgacgacggcgccgacgagcacgttcgggttggccccgcccgcgtacagc 397
Query: 482 gcggtgaacccctgcgagcaaccgatcctagccgggtgcgccgccacggacggcagcgac 541
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 398 gcggtgaacccctgcgagcacccgatcctacccgggtgcgccgccacggacggcagcgac 457
Query: 542 gaagcgcggtggtggatgcggcgcgggtacttggcgccgtagcccaccatgta 594
|| |||||||||||||| |||||||||||| | |||||||||||||||||||
Sbjct: 458 gaggcgcggtggtggatccggcgcgggtaccttccgccgtagcccaccatgta 510
Score = 115 bits (58), Expect = 5e-024
Identities = 140/167 (83%), Gaps = 14/167 (8%)
Strand = Plus / Plus
Query: 132 ccagcagcggcgtcgcgtaacaaacaaatcacgcc------tacgagtactagtggcaat 185
||||| |||||| | ||||||||||||| |||||| ||| | |||||||||||||
Sbjct: 5 ccagcggcggcggcacgtaacaaacaaaacacgcctactaatactattactagtggcaat 64
Query: 186 atattaagacccacaagcgaagcgtccttggttttg------cttgcactggggtcgtca 239
||||| ||||||||||||||||| |||| |||||| |||||||||||||| |||
Sbjct: 65 atatt--gacccacaagcgaagcgccctttgttttgcttgcacttgcactggggtcatca 122
Query: 240 aatcgcgatgctctaatttccgaacaatcaatcaacacggcaacaat 286
||||||||||||||||| |||||||||||||| |||||||| ||||
Sbjct: 123 aatcgcgatgctctaatcaccgaacaatcaatccacacggcagcaat 169
>gb|CW398346.1|CW398346 fsbb001f087l21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f087l21, DNA
sequence
Length = 741
Score = 462 bits (233), Expect = e-128
Identities = 278/293 (94%)
Strand = Plus / Minus
Query: 302 tagagctggccgtaggagtgcgcgaggtaggcgagcgcgccgacgagcggcgcgttgatg 361
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tagagctggccgtacgaatgcgcgaggtaggcgagcgcgccgacgagcggcgcgttgatg 611
Query: 362 taggtggccggctccgagtgctcgtggtcgttccgctcgtcggggaacctgtcctgcatg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 taggtggccggctccgagtgctcgtggtcgttccgctcgtcggggaacctgtcctgcatg 551
Query: 422 tcgggtcccccgacgacggcaccgacgagcaggttgggattggccccacccgcgtacagc 481
|||||||| ||||||||||| |||||||||| ||| || |||||||| ||||||||||||
Sbjct: 550 tcgggtccgccgacgacggcgccgacgagcacgttcgggttggccccgcccgcgtacagc 491
Query: 482 gcggtgaacccctgcgagcaaccgatcctagccgggtgcgccgccacggacggcagcgac 541
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 490 gcggtgaacccctgcgagcacccgatcctacccgggtgcgccgccacggacggcagcgac 431
Query: 542 gaagcgcggtggtggatgcggcgcgggtacttggcgccgtagcccaccatgta 594
|| |||||||||||||| |||||||||||| | |||||||||||||||||||
Sbjct: 430 gaggcgcggtggtggatccggcgcgggtaccttccgccgtagcccaccatgta 378
>gb|CW048701.1|CW048701 104_287_10513575_115_30213 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513575, DNA
sequence
Length = 247
Score = 198 bits (100), Expect = 4e-049
Identities = 118/124 (95%)
Strand = Plus / Plus
Query: 302 tagagctggccgtaggagtgcgcgaggtaggcgagcgcgccgacgagcggcgcgttgatg 361
|||||||||||||| || ||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 124 tagagctggccgtacgaatgcacgaggtaggcgagcgcgccgacaagcggcgcgttgatg 183
Query: 362 taggtggccggctccgagtgctcgtggtcgttccgctcgtcggggaacctgtcctgcatg 421
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 184 taggtggccggctccgagtgctcgtggtcgttccgctcggcagggaacctgtcctgcatg 243
Query: 422 tcgg 425
||||
Sbjct: 244 tcgg 247
Score = 89.7 bits (45), Expect = 3e-016
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 222 cttgcactggggtcgtcaaatcgcgatgctctaatttccgaacaatcaatcaacacggca 281
|||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 11 cttgcactggggtcatcaaatcgcgatgctctaatcaccgaacaatcaatccacacggca 70
Query: 282 acaat 286
||||
Sbjct: 71 gcaat 75
>gb|CW353678.1|CW353678 fsbb001f016i12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f016i12, DNA
sequence
Length = 470
Score = 79.8 bits (40), Expect = 3e-013
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 503 ccgatcctagccgggtgcgccgccacggacggcagcgacgaagcgcggtggtggatgcgg 562
||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 243 ccgatccgcgccgggtgcgccgccacggacggcagcgagctggcgcggtggtggatccgc 184
Query: 563 cgcgggtacttggcgccgtagcccaccatgta 594
|||||| || ||||||||| || ||||||||
Sbjct: 183 cgcgggaaccgggcgccgtacccgaccatgta 152
>gb|CW033055.1|CW033055 104_262_10501739_115_30362 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501739, DNA
sequence
Length = 498
Score = 77.8 bits (39), Expect = 1e-012
Identities = 78/91 (85%)
Strand = Plus / Minus
Query: 503 ccgatcctagccgggtgcgccgccacggacggcagcgacgaagcgcggtggtggatgcgg 562
||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 91 ccgatccgcgccgggtgcgccgccacggacggcagcgagctggcgcggtggtggatccgc 32
Query: 563 cgcgggtacttggcgccgtagcccaccatgt 593
|||||| || ||||||||| || |||||||
Sbjct: 31 cgcgggaaccgggcgccgtacccgaccatgt 1
>gb|CW420858.1|CW420858 fsbb001f128g08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f128g08, DNA
sequence
Length = 645
Score = 71.9 bits (36), Expect = 6e-011
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 539 gacgaagcgcggtggtggatgcggcgcgggtacttggcgccgtagcccaccatgta 594
||||| |||||||||||||| |||||||||||| | |||||||||||||||||||
Sbjct: 1 gacgaggcgcggtggtggatccggcgcgggtaccttccgccgtagcccaccatgta 56
>gb|CD225907.1|CD225907 CCC1_42_G11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_42_G11_A007 3', mRNA sequence
Length = 300
Score = 69.9 bits (35), Expect = 3e-010
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 330 aggcgagcgcgccgacgagcggcgcgttgatgtaggtgg 368
||||||||||||||||||||||||||||| |||||||||
Sbjct: 238 aggcgagcgcgccgacgagcggcgcgttggtgtaggtgg 200
>gb|CL182230.1|CL182230 104_393_10897285_116_31922_277 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10897285, DNA
sequence
Length = 555
Score = 65.9 bits (33), Expect = 4e-009
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 330 aggcgagcgcgccgacgagcggcgcgttgatgtaggt 366
||||||||||||||||||||||||||||| |||||||
Sbjct: 178 aggcgagcgcgccgacgagcggcgcgttggtgtaggt 214
Score = 40.1 bits (20), Expect = 0.23
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 431 ccgacgacggcaccgacgagcaggttgg 458
||||||||||| |||||||||| |||||
Sbjct: 279 ccgacgacggcgccgacgagcacgttgg 306
>gb|CL187169.1|CL187169 104_402_10900699_116_32436_072 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900699, DNA
sequence
Length = 592
Score = 65.9 bits (33), Expect = 4e-009
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 339 cgccgacgagcggcgcgttgatgtaggtggccggctc 375
||||||||||||||||||||||||||||||| |||||
Sbjct: 290 cgccgacgagcggcgcgttgatgtaggtggcgggctc 326
>gb|CW046815.1|CW046815 104_284_10512366_115_30220 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512366, DNA
sequence
Length = 324
Score = 65.9 bits (33), Expect = 4e-009
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 339 cgccgacgagcggcgcgttgatgtaggtggccggctc 375
||||||||||||||||||||||||||||||| |||||
Sbjct: 100 cgccgacgagcggcgcgttgatgtaggtggcgggctc 64
>gb|CW339974.1|CW339974 104_840_11485555_116_36138_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485555, DNA
sequence
Length = 747
Score = 65.9 bits (33), Expect = 4e-009
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 339 cgccgacgagcggcgcgttgatgtaggtggccggctc 375
||||||||||||||||||||||||||||||| |||||
Sbjct: 658 cgccgacgagcggcgcgttgatgtaggtggcgggctc 694
>gb|CW339975.1|CW339975 104_840_11485555_148_36139_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11485555, DNA
sequence
Length = 670
Score = 65.9 bits (33), Expect = 4e-009
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 339 cgccgacgagcggcgcgttgatgtaggtggccggctc 375
||||||||||||||||||||||||||||||| |||||
Sbjct: 257 cgccgacgagcggcgcgttgatgtaggtggcgggctc 221
>gb|CW495728.1|CW495728 fsbb001f287k03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f287k03, DNA
sequence
Length = 638
Score = 65.9 bits (33), Expect = 4e-009
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 339 cgccgacgagcggcgcgttgatgtaggtggccggctc 375
||||||||||||||||||||||||||||||| |||||
Sbjct: 200 cgccgacgagcggcgcgttgatgtaggtggcgggctc 164
>gb|CW457121.1|CW457121 fsbb001f202m15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f202m15, DNA
sequence
Length = 566
Score = 63.9 bits (32), Expect = 2e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 503 ccgatcctagccgggtgcgccgccacggacggcagcgacgaagcgcggtggtggatgcgg 562
||||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||
Sbjct: 485 ccgatccgcgccgggtgcgccgccacggacggcagcgagctggcgcggtggcggatccgc 544
Query: 563 cgcgggtacttggcgccgta 582
|||||| || |||||||||
Sbjct: 545 cgcgggaaccgggcgccgta 564
>gb|CW096195.1|CW096195 104_461_11001758_148_34329_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001758, DNA
sequence
Length = 532
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 347 agcggcgcgttgatgtaggtggccggctc 375
||||||||||||||||||||||| |||||
Sbjct: 393 agcggcgcgttgatgtaggtggcgggctc 421
>gb|CW495626.1|CW495626 fsbb001f287h17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f287h17, DNA
sequence
Length = 634
Score = 44.1 bits (22), Expect = 0.014
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 503 ccgatcctagccgggtgcgccgccacggacggcagcga 540
||||||| ||||||||||||| ||| |||||||||||
Sbjct: 514 ccgatccgcgccgggtgcgccgacaccgacggcagcga 477
>gb|CW337396.1|CW337396 104_837_11484141_116_36118_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11484141, DNA
sequence
Length = 398
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 511 agccgggtgcgccgccacgg 530
||||||||||||||||||||
Sbjct: 374 agccgggtgcgccgccacgg 355
>gb|CD424836.1|CD424836 SA1_7_A12.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_7_A12_A002 5', mRNA sequence
Length = 534
Score = 40.1 bits (20), Expect = 0.23
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 520 cgccgccacggacggcagcgacga 543
|||||||| |||||||||||||||
Sbjct: 377 cgccgccatggacggcagcgacga 400
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 159,245
Number of Sequences: 832831
Number of extensions: 159245
Number of successful extensions: 44002
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43954
Number of HSP's gapped (non-prelim): 42
length of query: 594
length of database: 491,359,669
effective HSP length: 19
effective length of query: 575
effective length of database: 475,535,880
effective search space: 273433131000
effective search space used: 273433131000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)