BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521556.2.1
(1267 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD219557.1|CD219557 CCC1_57_E04.g1_A007 Callus culture/c... 872 0.0
gb|CD229233.1|CD229233 CCC1_13_F08.g1_A007 Callus culture/c... 856 0.0
gb|CW500124.1|CW500124 fsbb001f295e09k0 Sorghum methylation... 531 e-149
gb|CW323788.1|CW323788 104_818_11476816_148_35907_062 Sorgh... 523 e-146
gb|BZ345790.1|BZ345790 ht57a10.b1 WGS-SbicolorF (JM107 adap... 517 e-145
gb|CW494651.1|CW494651 fsbb001f286a22k0 Sorghum methylation... 281 8e-074
gb|CW500123.1|CW500123 fsbb001f295e09f0 Sorghum methylation... 256 4e-066
gb|CD219536.1|CD219536 CCC1_57_E04.b1_A007 Callus culture/c... 214 1e-053
gb|CD428786.1|CD428786 ETH1_36_H03.b1_A002 Ethylene-treated... 214 1e-053
gb|BG411605.1|BG411605 EM1_58_H08.b1_A002 Embryo 1 (EM1) So... 105 1e-020
gb|CL171842.1|CL171842 104_374_10889715_148_31774_003 Sorgh... 98 2e-018
gb|CW141974.1|CW141974 104_533_11136596_148_34941_078 Sorgh... 98 2e-018
gb|AW287684.2|AW287684 LG1_271_B05.b1_A002 Light Grown 1 (L... 98 2e-018
gb|BG557842.1|BG557842 EM1_55_A10.b1_A002 Embryo 1 (EM1) So... 98 2e-018
gb|CW137234.1|CW137234 104_523_11119182_148_34867_023 Sorgh... 96 1e-017
gb|AW677154.1|AW677154 DG1_5_C08.b1_A002 Dark Grown 1 (DG1)... 96 1e-017
gb|AW923329.1|AW923329 DG1_51_F12.b1_A002 Dark Grown 1 (DG1... 96 1e-017
gb|BE361727.1|BE361727 DG1_82_F09.b1_A002 Dark Grown 1 (DG1... 96 1e-017
gb|BE363072.1|BE363072 DG1_9_F01.b1_A002 Dark Grown 1 (DG1)... 96 1e-017
gb|BG557805.1|BG557805 EM1_53_E01.b1_A002 Embryo 1 (EM1) So... 96 1e-017
gb|CD463437.1|CD463437 ETH1_44_B03.g1_A002 Ethylene-treated... 96 1e-017
gb|CN127401.1|CN127401 RHOH1_22_G02.g3_A002 Acid- and alkal... 96 1e-017
gb|CN130350.1|CN130350 RHOH1_40_H08.g1_A002 Acid- and alkal... 96 1e-017
gb|CX622055.1|CX622055 GABR1_61_F04.g2_A002 GA- or brassino... 96 1e-017
gb|BG557514.1|BG557514 EM1_54_B10.b1_A002 Embryo 1 (EM1) So... 90 6e-016
gb|CF427419.1|CF427419 PH1_1_A12.g1_A002 Phosphorous-defici... 90 6e-016
gb|CN145377.1|CN145377 WOUND1_28_C01.g1_A002 Wounded leaves... 90 6e-016
gb|CW220174.1|CW220174 104_654_11197212_116_37148_036 Sorgh... 86 9e-015
gb|CW447900.1|CW447900 fsbb001f181d19k0 Sorghum methylation... 86 9e-015
gb|CW190530.1|CW190530 104_612_11174553_148_36834_043 Sorgh... 82 1e-013
gb|BG559403.1|BG559403 RHIZ2_54_D07.b1_A003 Rhizome2 (RHIZ2... 82 1e-013
gb|CD430586.1|CD430586 ETH1_19_E05.g1_A002 Ethylene-treated... 82 1e-013
gb|CW301871.1|CW301871 104_785_11464426_148_36264_033 Sorgh... 74 4e-011
gb|AW286086.2|AW286086 LG1_261_C01.b1_A002 Light Grown 1 (L... 74 4e-011
gb|CW184129.1|CW184129 104_600_11164988_116_36688_076 Sorgh... 72 1e-010
gb|CD232788.1|CD232788 SS1_1_C02.g1_A012 Salt-stressed seed... 72 1e-010
gb|CD429152.1|CD429152 ETH1_2_D06.g1_A002 Ethylene-treated ... 72 1e-010
gb|CX610269.1|CX610269 ANR1_17_D05.g1_A002 Anaerobic roots ... 72 1e-010
gb|CX620716.1|CX620716 GABR1_53_C06.g1_A002 GA- or brassino... 72 1e-010
gb|CX622414.1|CX622414 GABR1_63_G05.g2_A002 GA- or brassino... 72 1e-010
gb|CL187928.1|CL187928 104_404_10901237_114_32442_031 Sorgh... 66 9e-009
gb|CW492797.1|CW492797 fsbb001f283e08f0 Sorghum methylation... 64 3e-008
gb|CW023422.1|CW023422 104_163_10432441_1_30001 Sorghum met... 62 1e-007
gb|CW035319.1|CW035319 104_265_10503086_114_30378 Sorghum m... 62 1e-007
gb|CW067572.1|CW067572 104_315_10524361_114_30124 Sorghum m... 62 1e-007
gb|CW304182.1|CW304182 104_789_11465646_148_35708_031 Sorgh... 62 1e-007
gb|CW386824.1|CW386824 fsbb001f070o12f0 Sorghum methylation... 62 1e-007
gb|BE362489.1|BE362489 DG1_87_C06.b1_A002 Dark Grown 1 (DG1... 62 1e-007
gb|CD431093.1|CD431093 ETH1_6_H02.g1_A002 Ethylene-treated ... 62 1e-007
gb|CN130948.1|CN130948 RHOH1_44_H12.g1_A002 Acid- and alkal... 62 1e-007
gb|CN132388.1|CN132388 OX1_5_H04.g1_A002 Oxidatively-stress... 62 1e-007
gb|CN141293.1|CN141293 OX1_50_C03.g1_A002 Oxidatively-stres... 62 1e-007
gb|CW302191.1|CW302191 104_786_11464593_116_35664_043 Sorgh... 60 5e-007
gb|BZ332713.1|BZ332713 hx30b08.g1 WGS-SbicolorF (JM107 adap... 58 2e-006
gb|CW180136.1|CW180136 104_594_11160476_148_36633_072 Sorgh... 56 8e-006
gb|CW218302.1|CW218302 104_651_11196114_116_37067_065 Sorgh... 56 8e-006
gb|CW218303.1|CW218303 104_651_11196114_116_37459_065 Sorgh... 56 8e-006
gb|CW218304.1|CW218304 104_651_11196114_148_37066_065 Sorgh... 56 8e-006
gb|CW218305.1|CW218305 104_651_11196114_148_37458_065 Sorgh... 56 8e-006
gb|AW677374.1|AW677374 DG1_6_A02.b1_A002 Dark Grown 1 (DG1)... 56 8e-006
gb|CN134143.1|CN134143 OX1_20_B11.g1_A002 Oxidatively-stres... 56 8e-006
gb|CL178881.1|CL178881 104_387_10894905_116_31906_201 Sorgh... 54 3e-005
gb|CW095836.1|CW095836 104_461_11001557_148_34328_027 Sorgh... 54 3e-005
gb|CW226157.1|CW226157 104_664_11204738_148_37217_013 Sorgh... 54 3e-005
gb|CW298152.1|CW298152 104_780_11462428_116_35649_006 Sorgh... 54 3e-005
gb|CW366630.1|CW366630 fsbb001f039l10k0 Sorghum methylation... 54 3e-005
gb|CW401628.1|CW401628 fsbb001f092i09k0 Sorghum methylation... 54 3e-005
gb|BE355802.1|BE355802 DG1_11_E04.b1_A002 Dark Grown 1 (DG1... 54 3e-005
gb|BF421185.1|BF421185 FM1_6_E04.b1_A003 Floral-Induced Mer... 54 3e-005
gb|BF421398.1|BF421398 FM1_8_D04.b1_A003 Floral-Induced Mer... 54 3e-005
gb|BG412766.1|BG412766 OV2_34_E08.b1_A002 Ovary 2 (OV2) Sor... 54 3e-005
gb|CD430870.1|CD430870 ETH1_5_F09.g1_A002 Ethylene-treated ... 54 3e-005
gb|CD430899.1|CD430899 ETH1_5_E09.g1_A002 Ethylene-treated ... 54 3e-005
gb|CD463131.1|CD463131 ETH1_42_D03.g1_A002 Ethylene-treated... 54 3e-005
gb|CN132197.1|CN132197 OX1_4_D12.g1_A002 Oxidatively-stress... 54 3e-005
gb|CN137157.1|CN137157 OX1_55_B10.g1_A002 Oxidatively-stres... 54 3e-005
gb|CN139737.1|CN139737 OX1_23_G08.g1_A002 Oxidatively-stres... 54 3e-005
gb|CN141334.1|CN141334 OX1_50_G06.g1_A002 Oxidatively-stres... 54 3e-005
gb|CN142356.1|CN142356 WOUND1_9_B05.g1_A002 Wounded leaves ... 54 3e-005
gb|CN143356.1|CN143356 WOUND1_15_F02.g1_A002 Wounded leaves... 54 3e-005
gb|CN148797.1|CN148797 WOUND1_58_G11.g1_A002 Wounded leaves... 54 3e-005
gb|CN149218.1|CN149218 WOUND1_61_A02.g1_A002 Wounded leaves... 54 3e-005
gb|CL172252.1|CL172252 104_374_10890016_116_31775_304 Sorgh... 52 1e-004
gb|CL175363.1|CL175363 104_380_10892393_148_31766_377 Sorgh... 52 1e-004
gb|CW036911.1|CW036911 104_268_10504039_114_30381 Sorghum m... 52 1e-004
gb|CW067692.1|CW067692 104_315_10524451_114_30124 Sorghum m... 52 1e-004
gb|CW139439.1|CW139439 104_529_11135238_148_34909_021 Sorgh... 52 1e-004
gb|CW215449.1|CW215449 104_647_11194545_116_37165_035 Sorgh... 52 1e-004
gb|CW248190.1|CW248190 104_709_11222168_116_35030_024 Sorgh... 52 1e-004
gb|CW248191.1|CW248191 104_709_11222168_148_35026_024 Sorgh... 52 1e-004
gb|CW311029.1|CW311029 104_800_11470021_116_35753_057 Sorgh... 52 1e-004
gb|CW370295.1|CW370295 fsbb001f045c09f0 Sorghum methylation... 52 1e-004
gb|CW395210.1|CW395210 fsbb001f083c11f0 Sorghum methylation... 52 1e-004
gb|CW415526.1|CW415526 fsbb001f115k18f0 Sorghum methylation... 52 1e-004
gb|CW415527.1|CW415527 fsbb001f115k18k0 Sorghum methylation... 52 1e-004
gb|BE356065.1|BE356065 DG1_122_C07.b1_A002 Dark Grown 1 (DG... 52 1e-004
gb|BE360387.1|BE360387 DG1_63_F11.b1_A002 Dark Grown 1 (DG1... 52 1e-004
gb|BE594226.1|BE594226 WS1_103_H02.b1_A002 Water-stressed 1... 52 1e-004
gb|BG649436.1|BG649436 EM1_79_D06.b1_A002 Embryo 1 (EM1) So... 52 1e-004
gb|BI643627.1|BI643627 DG1_92_B06.b1_A002 Dark Grown 1 (DG1... 52 1e-004
gb|CD462982.1|CD462982 ETH1_41_C06.g1_A002 Ethylene-treated... 52 1e-004
gb|CD463182.1|CD463182 ETH1_42_F03.g1_A002 Ethylene-treated... 52 1e-004
gb|CN132861.1|CN132861 OX1_8_E01.g1_A002 Oxidatively-stress... 52 1e-004
gb|CN138744.1|CN138744 OX1_13_D12.g1_A002 Oxidatively-stres... 52 1e-004
gb|CN139739.1|CN139739 OX1_23_G10.g1_A002 Oxidatively-stres... 52 1e-004
gb|CN141237.1|CN141237 OX1_50_E02.b1_A002 Oxidatively-stres... 52 1e-004
gb|CN141311.1|CN141311 OX1_50_E02.g1_A002 Oxidatively-stres... 52 1e-004
gb|CN149135.1|CN149135 WOUND1_61_A02.b1_A002 Wounded leaves... 52 1e-004
gb|CW168013.1|CW168013 104_577_11153917_148_36492_055 Sorgh... 50 5e-004
gb|CW183587.1|CW183587 104_599_11164694_148_36677_055 Sorgh... 50 5e-004
gb|CW224877.1|CW224877 104_662_11204056_116_37206_060 Sorgh... 50 5e-004
gb|AW676991.1|AW676991 DG1_3_D10.b1_A002 Dark Grown 1 (DG1)... 50 5e-004
gb|BE357599.1|BE357599 DG1_21_C03.b1_A002 Dark Grown 1 (DG1... 50 5e-004
gb|BE358620.1|BE358620 DG1_30_F09.b1_A002 Dark Grown 1 (DG1... 50 5e-004
gb|CB925482.1|CB925482 ABA1_33_G05.g1_A012 Abscisic acid-tr... 50 5e-004
gb|CD432214.1|CD432214 ETH1_26_E09.g1_A002 Ethylene-treated... 50 5e-004
gb|CD463838.1|CD463838 ETH1_47_F10.b1_A002 Ethylene-treated... 50 5e-004
gb|CD463985.1|CD463985 ETH1_47_F10.g1_A002 Ethylene-treated... 50 5e-004
gb|CN129146.1|CN129146 RHOH1_33_F09.g1_A002 Acid- and alkal... 50 5e-004
gb|CN140982.1|CN140982 OX1_48_C12.g1_A002 Oxidatively-stres... 50 5e-004
gb|CN142345.1|CN142345 WOUND1_9_A01.g1_A002 Wounded leaves ... 50 5e-004
gb|CN147630.1|CN147630 WOUND1_50_H12.g1_A002 Wounded leaves... 50 5e-004
gb|CX622011.1|CX622011 GABR1_61_B06.g2_A002 GA- or brassino... 50 5e-004
gb|CW157339.1|CW157339 104_560_11147178_116_36386_069 Sorgh... 48 0.002
gb|CN124295.1|CN124295 RHOH1_3_G12.g1_A002 Acid- and alkali... 48 0.002
gb|CN125978.1|CN125978 RHOH1_14_A10.g1_A002 Acid- and alkal... 48 0.002
gb|CN130505.1|CN130505 RHOH1_42_A05.b1_A002 Acid- and alkal... 48 0.002
gb|CN141562.1|CN141562 OX1_52_A06.g1_A002 Oxidatively-stres... 48 0.002
gb|CX609701.1|CX609701 ANR1_14_F01.b1_A002 Anaerobic roots ... 48 0.002
gb|CX622518.1|CX622518 GABR1_64_A06.g2_A002 GA- or brassino... 48 0.002
gb|CW137912.1|CW137912 104_525_11119926_116_34877_023 Sorgh... 46 0.008
gb|CW137913.1|CW137913 104_525_11119926_148_34873_023 Sorgh... 46 0.008
gb|CW141121.1|CW141121 104_532_11136149_116_34932_031 Sorgh... 46 0.008
gb|CW467395.1|CW467395 fsbb001f219b03k0 Sorghum methylation... 46 0.008
gb|CD220847.1|CD220847 CCC1_69_F04.g1_A007 Callus culture/c... 46 0.008
gb|CN137074.1|CN137074 OX1_55_B10.b1_A002 Oxidatively-stres... 44 0.031
gb|BZ626753.1|BZ626753 ih48b09.b1 WGS-SbicolorF (DH5a methy... 42 0.12
gb|CW021352.1|CW021352 104_160_10431214_5_30005 Sorghum met... 42 0.12
gb|CW090997.1|CW090997 104_449_10958586_114_32500_042 Sorgh... 42 0.12
gb|CW108847.1|CW108847 104_480_11097740_148_34500_070 Sorgh... 42 0.12
gb|CW256333.1|CW256333 104_721_11226731_116_35138_042 Sorgh... 42 0.12
gb|CW318140.1|CW318140 104_810_11473792_148_35868_060 Sorgh... 42 0.12
gb|CW336063.1|CW336063 104_835_11483391_116_36094_060 Sorgh... 42 0.12
gb|CW368469.1|CW368469 fsbb001f042h04f0 Sorghum methylation... 42 0.12
gb|CW370296.1|CW370296 fsbb001f045c09k0 Sorghum methylation... 42 0.12
gb|CW434448.1|CW434448 fsbb001f150c10k0 Sorghum methylation... 42 0.12
gb|CW434882.1|CW434882 fsbb001f150m16k0 Sorghum methylation... 42 0.12
gb|CW457970.1|CW457970 fsbb001f204a10k0 Sorghum methylation... 42 0.12
gb|CW490180.1|CW490180 fsbb001f275h22f0 Sorghum methylation... 42 0.12
gb|BE125495.1|BE125495 DG1_27_A01.b1_A002 Dark Grown 1 (DG1... 42 0.12
gb|BE358825.1|BE358825 DG1_32_D11.b1_A002 Dark Grown 1 (DG1... 42 0.12
gb|BE360502.1|BE360502 DG1_64_A05.b1_A002 Dark Grown 1 (DG1... 42 0.12
gb|BM323141.1|BM323141 PIC1_8_B08.b1_A002 Pathogen-infected... 42 0.12
gb|BM324939.1|BM324939 PIC1_37_G06.b1_A002 Pathogen-infecte... 42 0.12
gb|CD428130.1|CD428130 ETH1_32_C09.g1_A002 Ethylene-treated... 42 0.12
gb|CD430702.1|CD430702 ETH1_20_G03.g1_A002 Ethylene-treated... 42 0.12
gb|CD432560.1|CD432560 ETH1_30_D08.g1_A002 Ethylene-treated... 42 0.12
gb|CD463496.1|CD463496 ETH1_44_A03.g1_A002 Ethylene-treated... 42 0.12
gb|CN124436.1|CN124436 RHOH1_4_F03.g1_A002 Acid- and alkali... 42 0.12
gb|CN129214.1|CN129214 RHOH1_34_D09.b3_A002 Acid- and alkal... 42 0.12
gb|CN129302.1|CN129302 RHOH1_34_D09.g1_A002 Acid- and alkal... 42 0.12
gb|CN134563.1|CN134563 OX1_27_D04.b1_A002 Oxidatively-stres... 42 0.12
gb|CN134649.1|CN134649 OX1_27_D04.g1_A002 Oxidatively-stres... 42 0.12
gb|CN143544.1|CN143544 WOUND1_17_A02.b1_A002 Wounded leaves... 42 0.12
gb|CN143625.1|CN143625 WOUND1_17_A02.g1_A002 Wounded leaves... 42 0.12
gb|CN149574.1|CN149574 WOUND1_63_D02.g1_A002 Wounded leaves... 42 0.12
gb|CX610689.1|CX610689 ANR1_20_F02.b1_A002 Anaerobic roots ... 42 0.12
gb|CX610774.1|CX610774 ANR1_20_F02.g1_A002 Anaerobic roots ... 42 0.12
gb|CW030253.1|CW030253 104_258_10500145_114_30403 Sorghum m... 40 0.49
gb|CW139438.1|CW139438 104_529_11135238_116_34905_021 Sorgh... 40 0.49
gb|CW179495.1|CW179495 104_593_11160131_116_36625_038 Sorgh... 40 0.49
gb|CW217187.1|CW217187 104_650_11195522_148_37131_009 Sorgh... 40 0.49
gb|CW256509.1|CW256509 104_721_11226831_148_35142_054 Sorgh... 40 0.49
gb|CW337466.1|CW337466 104_837_11484180_148_36120_044 Sorgh... 40 0.49
gb|CW364923.1|CW364923 fsbb001f037d03f0 Sorghum methylation... 40 0.49
gb|CW380324.1|CW380324 fsbb001f061b04k0 Sorghum methylation... 40 0.49
gb|CW387944.1|CW387944 fsbb001f072i02k0 Sorghum methylation... 40 0.49
gb|CW474049.1|CW474049 fsbb001f229l06k0 Sorghum methylation... 40 0.49
gb|CW488401.1|CW488401 fsbb001f254m15k0 Sorghum methylation... 40 0.49
gb|AW565163.1|AW565163 LG1_328_C05.b1_A002 Light Grown 1 (L... 40 0.49
gb|AW677176.1|AW677176 DG1_5_G08.b1_A002 Dark Grown 1 (DG1)... 40 0.49
gb|AW923415.1|AW923415 DG1_51_F12.g1_A002 Dark Grown 1 (DG1... 40 0.49
gb|BE361868.1|BE361868 DG1_82_F09.g1_A002 Dark Grown 1 (DG1... 40 0.49
gb|BE363156.1|BE363156 DG1_9_F01.g1_A002 Dark Grown 1 (DG1)... 40 0.49
gb|CN124571.1|CN124571 RHOH1_5_D07.g1_A002 Acid- and alkali... 40 0.49
gb|CN134491.1|CN134491 OX1_26_E02.g1_A002 Oxidatively-stres... 40 0.49
gb|CN139201.1|CN139201 OX1_16_D09.g1_A002 Oxidatively-stres... 40 0.49
gb|CN148298.1|CN148298 WOUND1_55_A05.g1_A002 Wounded leaves... 40 0.49
gb|CF675644.1|CF675644 GST3 Subtractive cDNA library from s... 40 0.49
gb|CX621969.1|CX621969 GABR1_61_F04.b2_A002 GA- or brassino... 40 0.49
>gb|CD219557.1|CD219557 CCC1_57_E04.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_57_E04_A007 5', mRNA sequence
Length = 646
Score = 872 bits (440), Expect = 0.0
Identities = 503/524 (95%)
Strand = Plus / Plus
Query: 87 ccccgctgatgctgttcgggtcgtgggcgagctcgtacacgcaccgcgtgcagctggcgc 146
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ccccgctgaagctgttcgggtcgtgggcgagctcgtacacgcaccgcgtgcagctggcgc 181
Query: 147 tgcggctcaagggcctggagttcgactacgtggaggaggacctggggaacaagagcgacg 206
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tgcggctcaagggccttgagttcgactacgtggaggaggacctggggaacaagagcgacg 241
Query: 207 agctgctgcgccacaaccccgtccacaagaaggtgcccgtgctcgtccacggcggccgcg 266
||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 242 agctgctccgccacaaccccgtccacaagaaggtccccgtcctcgtccacggcggccgcg 301
Query: 267 cgctcccggagtccgtcattatcctccagtaccttgacgacgcctggccggagacccgcc 326
| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct: 302 ccctcccggagtccgtcatcatcctccagtacctcgacgacgcctggcccgagacccgcc 361
Query: 327 cgctgctccccgccgacgccttcgaccgcgcgctcgcgcggttctggtgccacttcgccg 386
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cgctcctccccgccgacgccttcgaccgcgcgctcgcgcggttctggtgccacttcgccg 421
Query: 387 acgacaagctcgggccggcggtgggcacggtgttcgcgtcgacgggggaggaccaggagg 446
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 422 acgacaagctcgggccggcggtgggcgcggtgttcgcgtcgacgggggaggaccaggagg 481
Query: 447 cggcggtgcgccaggtgcacgagaacctggccctgatcgagtccgagctccgcgacggcg 506
|||||||||| |||||||||||||||||||| ||| ||||| ||||||||||||||||||
Sbjct: 482 cggcggtgcggcaggtgcacgagaacctggcgctgctcgagaccgagctccgcgacggcg 541
Query: 507 cgttccggggccgccgcttcttcggcggcgacgaggtgggcctgctggacgtcgtcctgg 566
||||| ||||||| |||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 542 cgttcaggggccgtcgcttcttcggcggcgccgaggtgggcctcctggacgtcgtcctgg 601
Query: 567 gctgcggctcctactggctcgccgtgttcgaggaggtgaccggg 610
|||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 602 gctgcggctcctactggctcgccgtgttcgaggacgtcaccggg 645
>gb|CD229233.1|CD229233 CCC1_13_F08.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_13_F08_A007 5', mRNA sequence
Length = 617
Score = 856 bits (432), Expect = 0.0
Identities = 489/508 (96%)
Strand = Plus / Plus
Query: 87 ccccgctgatgctgttcgggtcgtgggcgagctcgtacacgcaccgcgtgcagctggcgc 146
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ccccgctgaagctgttcgggtcgtgggcgagctcgtacacgcaccgcgtgcagctggcgc 169
Query: 147 tgcggctcaagggcctggagttcgactacgtggaggaggacctggggaacaagagcgacg 206
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tgcggctcaagggccttgagttcgactacgtggaggaggacctggggaacaagagcgacg 229
Query: 207 agctgctgcgccacaaccccgtccacaagaaggtgcccgtgctcgtccacggcggccgcg 266
||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 230 agctgctccgccacaaccccgtccacaagaaggtccccgtcctcgtccacggcggccgcg 289
Query: 267 cgctcccggagtccgtcattatcctccagtaccttgacgacgcctggccggagacccgcc 326
| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct: 290 ccctcccggagtccgtcatcatcctccagtacctcgacgacgcctggcccgagacccgcc 349
Query: 327 cgctgctccccgccgacgccttcgaccgcgcgctcgcgcggttctggtgccacttcgccg 386
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cgctcctccccgccgacgccttcgaccgcgcgctcgcgcggttctggtgccacttcgccg 409
Query: 387 acgacaagctcgggccggcggtgggcacggtgttcgcgtcgacgggggaggaccaggagg 446
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 410 acgacaagctcgggccggcggtgggcgcggtgttcgcgtcgacgggggaggaccaggagg 469
Query: 447 cggcggtgcgccaggtgcacgagaacctggccctgatcgagtccgagctccgcgacggcg 506
|||||||||| |||||||||||||||||||| ||| ||||| ||||||||||||||||||
Sbjct: 470 cggcggtgcggcaggtgcacgagaacctggcgctgctcgagaccgagctccgcgacggcg 529
Query: 507 cgttccggggccgccgcttcttcggcggcgacgaggtgggcctgctggacgtcgtcctgg 566
||||| ||||||| |||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 530 cgttcaggggccgtcgcttcttcggcggcgccgaggtgggcctcctggacgtcgtcctgg 589
Query: 567 gctgcggctcctactggctcgccgtgtt 594
||||||||||||||||||||||||||||
Sbjct: 590 gctgcggctcctactggctcgccgtgtt 617
>gb|CW500124.1|CW500124 fsbb001f295e09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f295e09, DNA
sequence
Length = 481
Score = 531 bits (268), Expect = e-149
Identities = 298/308 (96%)
Strand = Plus / Plus
Query: 87 ccccgctgatgctgttcgggtcgtgggcgagctcgtacacgcaccgcgtgcagctggcgc 146
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 ccccgctgaagctgttcgggtcgtgggcgagctcgtacacgcaccgcgtgcagctggcgc 200
Query: 147 tgcggctcaagggcctggagttcgactacgtggaggaggacctggggaacaagagcgacg 206
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcggctcaagggccttgagttcgactacgtggaggaggacctggggaacaagagcgacg 260
Query: 207 agctgctgcgccacaaccccgtccacaagaaggtgcccgtgctcgtccacggcggccgcg 266
||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 261 agctgctccgccacaaccccgtccacaagaaggtccccgtcctcgtccacggcggccgcg 320
Query: 267 cgctcccggagtccgtcattatcctccagtaccttgacgacgcctggccggagacccgcc 326
| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct: 321 ccctcccggagtccgtcatcatcctccagtacctcgacgacgcctggcccgagacccgcc 380
Query: 327 cgctgctccccgccgacgccttcgaccgcgcgctcgcgcggttctggtgccacttcgccg 386
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgctcctccccgccgacgccttcgaccgcgcgctcgcgcggttctggtgccacttcgccg 440
Query: 387 acgacaag 394
||||||||
Sbjct: 441 acgacaag 448
>gb|CW323788.1|CW323788 104_818_11476816_148_35907_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476816, DNA
sequence
Length = 648
Score = 523 bits (264), Expect = e-146
Identities = 297/308 (96%)
Strand = Plus / Plus
Query: 87 ccccgctgatgctgttcgggtcgtgggcgagctcgtacacgcaccgcgtgcagctggcgc 146
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ccccgctgaagctgttcgggtcgtgggcgagctcgtacacgcaccgcgtgcagctggcgc 361
Query: 147 tgcggctcaagggcctggagttcgactacgtggaggaggacctggggaacaagagcgacg 206
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tgcggctcaagggccttgagttcgactacgtggaggaggacctggggaacaagagcgacg 421
Query: 207 agctgctgcgccacaaccccgtccacaagaaggtgcccgtgctcgtccacggcggccgcg 266
||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 422 agctgctccgccacaaccccgtccacaagaaggtccccgtcctcgtccacggcggccgcg 481
Query: 267 cgctcccggagtccgtcattatcctccagtaccttgacgacgcctggccggagacccgcc 326
| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 482 ccctcccggagtccgtcatcatcctccagtacctcgacgacgcctggcccgagacacgcc 541
Query: 327 cgctgctccccgccgacgccttcgaccgcgcgctcgcgcggttctggtgccacttcgccg 386
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 cgctcctccccgccgacgccttcgaccgcgcgctcgcgcggttctggtgccacttcgccg 601
Query: 387 acgacaag 394
||||||||
Sbjct: 602 acgacaag 609
>gb|BZ345790.1|BZ345790 ht57a10.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ht57a10 5', DNA sequence
Length = 695
Score = 517 bits (261), Expect = e-145
Identities = 298/309 (96%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 87 ccccgctgatgctgttcgggtcgtgggcgagctcgtacacgcaccgcgtgcagctggcgc 146
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ccccgctgaagctgttcgggtcgtgggcgagctcgtacacgcaccgcgtgcagctggcgc 361
Query: 147 tgcggctcaagggcctggagttcgactacgtggaggaggacctggggaacaagagcgacg 206
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tgcggctcaagggccttgagttcgactacgtggaggaggacctggggaacaagagcgacg 421
Query: 207 agctgctgcgccacaaccccgtccacaagaaggtgcccgtgctcgtccacggcggccgcg 266
||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 422 agctgctccgccacaaccccgtccacaagaaggtccccgtcctcgtccacggcggccgcg 481
Query: 267 cgctcccggagtccgtcattatcctccagtaccttgacgacgcctggccggagacccgcc 326
| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct: 482 ccctcccggagtccgtcatcatcctccagtacctcgacgacgcctggcccgagacccgcc 541
Query: 327 cgctgctccccgccgacgccttcgaccgcgcgctcgcgcggttctggtgccacttcg-cc 385
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 542 cgctcctccccgccgacgccttcgaccgcgcgctcgcgcggttctggtgccacttcgccc 601
Query: 386 gacgacaag 394
|||||||||
Sbjct: 602 gacgacaag 610
>gb|CW494651.1|CW494651 fsbb001f286a22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f286a22, DNA
sequence
Length = 366
Score = 281 bits (142), Expect = 8e-074
Identities = 190/206 (92%)
Strand = Plus / Plus
Query: 87 ccccgctgatgctgttcgggtcgtgggcgagctcgtacacgcaccgcgtgcagctggcgc 146
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ccccgctgaagctggtcgggtcgtgggcgagctcgtacacgcaccgcgtgcagctggcgc 220
Query: 147 tgcggctcaagggcctggagttcgactacgtggaggaggacctggggaacaagagcgacg 206
||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 221 tgcggctcaggggccttgagttcgactacttggaggaggacctggggaacaagagcgacg 280
Query: 207 agctgctgcgccacaaccccgtccacaagaaggtgcccgtgctcgtccacggcggccgcg 266
||||||| |||||||||||||||||| | ||||| ||||| ||||||| ||| |||||||
Sbjct: 281 agctgctccgccacaaccccgtccacgaaaaggtccccgtcctcgtccgcggaggccgcg 340
Query: 267 cgctcccggagtccgtcattatcctc 292
||||||||||||| ||| ||||||
Sbjct: 341 tcctcccggagtccggcatcatcctc 366
>gb|CW500123.1|CW500123 fsbb001f295e09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f295e09, DNA
sequence
Length = 410
Score = 256 bits (129), Expect = 4e-066
Identities = 169/181 (93%), Gaps = 1/181 (0%)
Strand = Plus / Minus
Query: 569 tgcggctcctactggctcgccgtgttcgaggaggtgaccggggtgcgctctcgtggacgc 628
|||||||||||||||||| ||||||||||||| || |||||| ||||| |||||||||||
Sbjct: 406 tgcggctcctactggctcaccgtgttcgaggacgtcaccgggctgcgc-ctcgtggacgc 348
Query: 629 cgacgccttcccgcgcttccacgcctggctgcgcgacttcgaggccctggacgaggtccg 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 cgacgccttcccgcgcttccacgcctggctgcgcgacttcgaggccctggacgaggtccg 288
Query: 689 ggagaccatccccgcggtggaccgcctgctcgagtacgcgcgcggcctccgccacatgct 748
|| ||||||||||| || |||||||| || || ||||||||||||||||||||||||||
Sbjct: 287 cgacaccatccccgccgtcgaccgcctcctggactacgcgcgcggcctccgccacatgct 228
Query: 749 g 749
|
Sbjct: 227 g 227
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 917 tagtaccagtatagtttgcagagtcgattgcgccatgt 954
||||||||||||||||||| | |||||| |||||||||
Sbjct: 38 tagtaccagtatagtttgccgtgtcgatggcgccatgt 1
Score = 44.1 bits (22), Expect = 0.031
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 826 cggctgacatcaccgtcgacatttgaacgc 855
||||||||||| |||||||||| |||||||
Sbjct: 153 cggctgacatcgccgtcgacatctgaacgc 124
>gb|CD219536.1|CD219536 CCC1_57_E04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_57_E04_A007 3', mRNA sequence
Length = 580
Score = 214 bits (108), Expect = 1e-053
Identities = 145/156 (92%), Gaps = 1/156 (0%)
Strand = Plus / Plus
Query: 594 tcgaggaggtgaccggggtgcgctctcgtggacgccgacgccttcccgcgcttccacgcc 653
||||||| || |||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgaggacgtcaccgggctgcgc-ctcgtggacgccgacgccttcccgcgcttccacgcc 59
Query: 654 tggctgcgcgacttcgaggccctggacgaggtccgggagaccatccccgcggtggaccgc 713
||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||||
Sbjct: 60 tggctgcgcgacttcgaggccctggacgaggtccgcgacaccatccccgccgtcgaccgc 119
Query: 714 ctgctcgagtacgcgcgcggcctccgccacatgctg 749
|| || || |||||||||||||||||||||||||||
Sbjct: 120 ctccttgactacgcgcgcggcctccgccacatgctg 155
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 917 tagtaccagtatagtttgcagagtcgattgcgccatgt 954
||||||||||||||||||| | |||||| |||||||||
Sbjct: 344 tagtaccagtatagtttgccgtgtcgatggcgccatgt 381
Score = 44.1 bits (22), Expect = 0.031
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 826 cggctgacatcaccgtcgacatttgaacgc 855
||||||||||| |||||||||| |||||||
Sbjct: 229 cggctgacatcgccgtcgacatctgaacgc 258
>gb|CD428786.1|CD428786 ETH1_36_H03.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_36_H03_A002 3', mRNA sequence
Length = 583
Score = 214 bits (108), Expect = 1e-053
Identities = 126/132 (95%)
Strand = Plus / Plus
Query: 618 ctcgtggacgccgacgccttcccgcgcttccacgcctggctgcgcgacttcgaggccctg 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcgtggacgccgacgccttcccgcgcttccacgcctggctgcgcgacttcgaggccctg 60
Query: 678 gacgaggtccgggagaccatccccgcggtggaccgcctgctcgagtacgcgcgcggcctc 737
||||||||||| || ||||||||||| || |||||||| ||||| |||||||||||||||
Sbjct: 61 gacgaggtccgcgacaccatccccgccgtcgaccgcctcctcgactacgcgcgcggcctc 120
Query: 738 cgccacatgctg 749
||||||||||||
Sbjct: 121 cgccacatgctg 132
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 917 tagtaccagtatagtttgcagagtcgattgcgccatgt 954
||||||||||||||||||| | |||||| |||||||||
Sbjct: 321 tagtaccagtatagtttgccgtgtcgatggcgccatgt 358
Score = 44.1 bits (22), Expect = 0.031
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 826 cggctgacatcaccgtcgacatttgaacgc 855
||||||||||| |||||||||| |||||||
Sbjct: 206 cggctgacatcgccgtcgacatctgaacgc 235
>gb|BG411605.1|BG411605 EM1_58_H08.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 281
Score = 105 bits (53), Expect = 1e-020
Identities = 106/121 (87%), Gaps = 2/121 (1%)
Strand = Plus / Plus
Query: 141 tggcgctgcggctcaagggcctggagttcgactacgtggaggaggacctggggaacaaga 200
||||||||| ||||||||||| |||| |||| |||||||||||||||| |||||||
Sbjct: 142 tggcgctgcacctcaagggcctcgagtacgacaacgtggaggaggacctcaccaacaaga 201
Query: 201 gcgacgagctgctgcgccac-aaccccgtccacaagaaggtgcccgtgctcgtccacggc 259
||||| |||| || |||| | |||||||||||||||||||||||||||||| ||||||||
Sbjct: 202 gcgaccagctcct-cgcctccaaccccgtccacaagaaggtgcccgtgctcctccacggc 260
Query: 260 g 260
|
Sbjct: 261 g 261
>gb|CL171842.1|CL171842 104_374_10889715_148_31774_003 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10889715, DNA
sequence
Length = 698
Score = 97.6 bits (49), Expect = 2e-018
Identities = 105/121 (86%), Gaps = 2/121 (1%)
Strand = Plus / Plus
Query: 141 tggcgctgcggctcaagggcctggagttcgactacgtggaggaggacctggggaacaaga 200
||||||||| ||||||||||| |||| ||| |||||||||||||||| |||||||
Sbjct: 453 tggcgctgcacctcaagggcctcgagtacgagaacgtggaggaggacctcaccaacaaga 512
Query: 201 gcgacgagctgctgcgccac-aaccccgtccacaagaaggtgcccgtgctcgtccacggc 259
||||| |||| || |||| | |||||||||||||||||||||||||||||| ||||||||
Sbjct: 513 gcgaccagctcct-cgcctccaaccccgtccacaagaaggtgcccgtgctcctccacggc 571
Query: 260 g 260
|
Sbjct: 572 g 572
>gb|CW141974.1|CW141974 104_533_11136596_148_34941_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11136596, DNA
sequence
Length = 674
Score = 97.6 bits (49), Expect = 2e-018
Identities = 105/121 (86%), Gaps = 2/121 (1%)
Strand = Plus / Plus
Query: 141 tggcgctgcggctcaagggcctggagttcgactacgtggaggaggacctggggaacaaga 200
||||||||| ||||||||||| |||| ||| |||||||||||||||| |||||||
Sbjct: 294 tggcgctgcacctcaagggcctcgagtacgagaacgtggaggaggacctcaccaacaaga 353
Query: 201 gcgacgagctgctgcgccac-aaccccgtccacaagaaggtgcccgtgctcgtccacggc 259
||||| |||| || |||| | |||||||||||||||||||||||||||||| ||||||||
Sbjct: 354 gcgaccagctcct-cgcctccaaccccgtccacaagaaggtgcccgtgctcctccacggc 412
Query: 260 g 260
|
Sbjct: 413 g 413
>gb|AW287684.2|AW287684 LG1_271_B05.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 319
Score = 97.6 bits (49), Expect = 2e-018
Identities = 105/121 (86%), Gaps = 2/121 (1%)
Strand = Plus / Plus
Query: 141 tggcgctgcggctcaagggcctggagttcgactacgtggaggaggacctggggaacaaga 200
||||||||| ||||||||||| |||| ||| |||||||||||||||| |||||||
Sbjct: 147 tggcgctgcacctcaagggcctcgagtacgagaacgtggaggaggacctcaccaacaaga 206
Query: 201 gcgacgagctgctgcgccac-aaccccgtccacaagaaggtgcccgtgctcgtccacggc 259
||||| |||| || |||| | |||||||||||||||||||||||||||||| ||||||||
Sbjct: 207 gcgaccagctcct-cgcctccaaccccgtccacaagaaggtgcccgtgctcctccacggc 265
Query: 260 g 260
|
Sbjct: 266 g 266
>gb|BG557842.1|BG557842 EM1_55_A10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 384
Score = 97.6 bits (49), Expect = 2e-018
Identities = 105/121 (86%), Gaps = 2/121 (1%)
Strand = Plus / Plus
Query: 141 tggcgctgcggctcaagggcctggagttcgactacgtggaggaggacctggggaacaaga 200
||||||||| ||||||||||| |||| ||| |||||||||||||||| |||||||
Sbjct: 142 tggcgctgcacctcaagggcctcgagtacgagaacgtggaggaggacctcaccaacaaga 201
Query: 201 gcgacgagctgctgcgccac-aaccccgtccacaagaaggtgcccgtgctcgtccacggc 259
||||| |||| || |||| | |||||||||||||||||||||||||||||| ||||||||
Sbjct: 202 gcgaccagctcct-cgcctccaaccccgtccacaagaaggtgcccgtgctcctccacggc 260
Query: 260 g 260
|
Sbjct: 261 g 261
>gb|CW137234.1|CW137234 104_523_11119182_148_34867_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11119182, DNA
sequence
Length = 667
Score = 95.6 bits (48), Expect = 1e-017
Identities = 78/88 (88%)
Strand = Plus / Minus
Query: 178 ggaggaggacctggggaacaagagcgacgagctgctgcgccacaaccccgtccacaagaa 237
|||| |||||||| | ||||||||||| |||||||| |||||||||||| ||||||||
Sbjct: 256 ggagaaggacctgcgcaacaagagcgagctgctgctgcaccacaaccccgtgcacaagaa 197
Query: 238 ggtgcccgtgctcgtccacggcggccgc 265
||||||||||||| ||||||||| ||||
Sbjct: 196 ggtgcccgtgctcctccacggcgaccgc 169
>gb|AW677154.1|AW677154 DG1_5_C08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 497
Score = 95.6 bits (48), Expect = 1e-017
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 178 ggaggaggacctggggaacaagagcgacgagctgctgcgccacaaccccgtccacaagaa 237
|||| |||||||| | ||||||||||| |||||||| |||||||||||| ||||||||
Sbjct: 169 ggagaaggacctgcgcaacaagagcgagctgctgctgcaccacaaccccgtgcacaagaa 228
Query: 238 ggtgcccgtgctcgtccacggcggccgc 265
||||||||||||| ||||||||| ||||
Sbjct: 229 ggtgcccgtgctcctccacggcgaccgc 256
>gb|AW923329.1|AW923329 DG1_51_F12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 432
Score = 95.6 bits (48), Expect = 1e-017
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 178 ggaggaggacctggggaacaagagcgacgagctgctgcgccacaaccccgtccacaagaa 237
|||| |||||||| | ||||||||||| |||||||| |||||||||||| ||||||||
Sbjct: 164 ggagaaggacctgcgcaacaagagcgagctgctgctgcaccacaaccccgtgcacaagaa 223
Query: 238 ggtgcccgtgctcgtccacggcggccgc 265
||||||||||||| ||||||||| ||||
Sbjct: 224 ggtgcccgtgctcctccacggcgaccgc 251
>gb|BE361727.1|BE361727 DG1_82_F09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 494
Score = 95.6 bits (48), Expect = 1e-017
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 178 ggaggaggacctggggaacaagagcgacgagctgctgcgccacaaccccgtccacaagaa 237
|||| |||||||| | ||||||||||| |||||||| |||||||||||| ||||||||
Sbjct: 169 ggagaaggacctgcgcaacaagagcgagctgctgctgcaccacaaccccgtgcacaagaa 228
Query: 238 ggtgcccgtgctcgtccacggcggccgc 265
||||||||||||| ||||||||| ||||
Sbjct: 229 ggtgcccgtgctcctccacggcgaccgc 256
>gb|BE363072.1|BE363072 DG1_9_F01.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 503
Score = 95.6 bits (48), Expect = 1e-017
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 178 ggaggaggacctggggaacaagagcgacgagctgctgcgccacaaccccgtccacaagaa 237
|||| |||||||| | ||||||||||| |||||||| |||||||||||| ||||||||
Sbjct: 172 ggagaaggacctgcgcaacaagagcgagctgctgctgcaccacaaccccgtgcacaagaa 231
Query: 238 ggtgcccgtgctcgtccacggcggccgc 265
||||||||||||| ||||||||| ||||
Sbjct: 232 ggtgcccgtgctcctccacggcgaccgc 259
>gb|BG557805.1|BG557805 EM1_53_E01.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 309
Score = 95.6 bits (48), Expect = 1e-017
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 178 ggaggaggacctggggaacaagagcgacgagctgctgcgccacaaccccgtccacaagaa 237
|||| |||||||| | ||||||||||| |||||||| |||||||||||| ||||||||
Sbjct: 164 ggagaaggacctgcgcaacaagagcgagctgctgctgcaccacaaccccgtgcacaagaa 223
Query: 238 ggtgcccgtgctcgtccacggcggccgc 265
||||||||||||| ||||||||| ||||
Sbjct: 224 ggtgcccgtgctcctccacggcgaccgc 251
>gb|CD463437.1|CD463437 ETH1_44_B03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_44_B03_A002 5', mRNA sequence
Length = 586
Score = 95.6 bits (48), Expect = 1e-017
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 178 ggaggaggacctggggaacaagagcgacgagctgctgcgccacaaccccgtccacaagaa 237
|||| |||||||| | ||||||||||| |||||||| |||||||||||| ||||||||
Sbjct: 184 ggagaaggacctgcgcaacaagagcgagctgctgctgcaccacaaccccgtgcacaagaa 243
Query: 238 ggtgcccgtgctcgtccacggcggccgc 265
||||||||||||| ||||||||| ||||
Sbjct: 244 ggtgcccgtgctcctccacggcgaccgc 271
>gb|CN127401.1|CN127401 RHOH1_22_G02.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_22_G02_A002 5', mRNA sequence
Length = 748
Score = 95.6 bits (48), Expect = 1e-017
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 178 ggaggaggacctggggaacaagagcgacgagctgctgcgccacaaccccgtccacaagaa 237
|||| |||||||| | ||||||||||| |||||||| |||||||||||| ||||||||
Sbjct: 158 ggagaaggacctgcgcaacaagagcgagctgctgctgcaccacaaccccgtgcacaagaa 217
Query: 238 ggtgcccgtgctcgtccacggcggccgc 265
||||||||||||| ||||||||| ||||
Sbjct: 218 ggtgcccgtgctcctccacggcgaccgc 245
>gb|CN130350.1|CN130350 RHOH1_40_H08.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_40_H08_A002 5', mRNA sequence
Length = 626
Score = 95.6 bits (48), Expect = 1e-017
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 178 ggaggaggacctggggaacaagagcgacgagctgctgcgccacaaccccgtccacaagaa 237
|||| |||||||| | ||||||||||| |||||||| |||||||||||| ||||||||
Sbjct: 155 ggagaaggacctgcgcaacaagagcgagctgctgctgcaccacaaccccgtgcacaagaa 214
Query: 238 ggtgcccgtgctcgtccacggcggccgc 265
||||||||||||| ||||||||| ||||
Sbjct: 215 ggtgcccgtgctcctccacggcgaccgc 242
>gb|CX622055.1|CX622055 GABR1_61_F04.g2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_61_F04_A002 5', mRNA sequence
Length = 718
Score = 95.6 bits (48), Expect = 1e-017
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 178 ggaggaggacctggggaacaagagcgacgagctgctgcgccacaaccccgtccacaagaa 237
|||| |||||||| | ||||||||||| |||||||| |||||||||||| ||||||||
Sbjct: 158 ggagaaggacctgcgcaacaagagcgagctgctgctgcaccacaaccccgtgcacaagaa 217
Query: 238 ggtgcccgtgctcgtccacggcggccgc 265
||||||||||||| ||||||||| ||||
Sbjct: 218 ggtgcccgtgctcctccacggcgaccgc 245
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 524 ttcttcggcggcgacgaggtgggc 547
||||||||||||||||| ||||||
Sbjct: 489 ttcttcggcggcgacgacgtgggc 512
>gb|BG557514.1|BG557514 EM1_54_B10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 521
Score = 89.7 bits (45), Expect = 6e-016
Identities = 104/121 (85%), Gaps = 2/121 (1%)
Strand = Plus / Plus
Query: 141 tggcgctgcggctcaagggcctggagttcgactacgtggaggaggacctggggaacaaga 200
||||||||| ||||||||||| |||| ||| |||||||||||||||| |||||||
Sbjct: 142 tggcgctgcacctcaagggcctcgagtacgagaacgtggaggaggacctcaccaacaaga 201
Query: 201 gcgacgagctgctgcgccac-aaccccgtccacaagaaggtgcccgtgctcgtccacggc 259
||||| |||| || |||| | ||||||||||||||||||| |||||||||| ||||||||
Sbjct: 202 gcgaccagctcct-cgcctccaaccccgtccacaagaaggagcccgtgctcctccacggc 260
Query: 260 g 260
|
Sbjct: 261 g 261
>gb|CF427419.1|CF427419 PH1_1_A12.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_1_A12_A002 5', mRNA sequence
Length = 611
Score = 89.7 bits (45), Expect = 6e-016
Identities = 104/121 (85%), Gaps = 2/121 (1%)
Strand = Plus / Plus
Query: 141 tggcgctgcggctcaagggcctggagttcgactacgtggaggaggacctggggaacaaga 200
||||||||| ||||||||||| |||| ||| |||||||||||||||| |||| ||
Sbjct: 194 tggcgctgcacctcaagggcctcgagtacgagaacgtggaggaggacctcaccaacagga 253
Query: 201 gcgacgagctgctgcgccac-aaccccgtccacaagaaggtgcccgtgctcgtccacggc 259
||||| |||| || |||| | |||||||||||||||||||||||||||||| ||||||||
Sbjct: 254 gcgaccagctcct-cgcctccaaccccgtccacaagaaggtgcccgtgctcctccacggc 312
Query: 260 g 260
|
Sbjct: 313 g 313
>gb|CN145377.1|CN145377 WOUND1_28_C01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_28_C01_A002 5', mRNA sequence
Length = 515
Score = 89.7 bits (45), Expect = 6e-016
Identities = 95/109 (87%), Gaps = 2/109 (1%)
Strand = Plus / Plus
Query: 153 tcaagggcctggagttcgactacgtggaggaggacctggggaacaagagcgacgagctgc 212
|||||||||| |||| ||| |||||||||||||||| |||||||||||| |||| |
Sbjct: 110 tcaagggcctcgagtacgagaacgtggaggaggacctcaccaacaagagcgaccagctcc 169
Query: 213 tgcgccac-aaccccgtccacaagaaggtgcccgtgctcgtccacggcg 260
| |||| | |||||||||||||||||||||||||||||| |||||||||
Sbjct: 170 t-cgcctccaaccccgtccacaagaaggtgcccgtgctcctccacggcg 217
>gb|CW220174.1|CW220174 104_654_11197212_116_37148_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197212, DNA
sequence
Length = 691
Score = 85.7 bits (43), Expect = 9e-015
Identities = 105/123 (85%), Gaps = 2/123 (1%)
Strand = Plus / Plus
Query: 141 tggcgctgcggctcaagggcctggagttcgactacgtggaggaggacctggggaacaaga 200
||||||||| |||||||| ||||| | ||| |||||||||| |||||| | |||||
Sbjct: 124 tggcgctgcacctcaagggactggactacgagtacgtggaggtggacctcgccgacaagg 183
Query: 201 gcgacgagctgctgcgccac-aaccccgtccacaagaaggtgcccgtgctcgtccacggc 259
||||| ||| || |||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 184 gcgacctgctcct-cgccaccaaccccgtccacaagaaggtgcccgtgctcctccacggc 242
Query: 260 ggc 262
|||
Sbjct: 243 ggc 245
>gb|CW447900.1|CW447900 fsbb001f181d19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f181d19, DNA
sequence
Length = 501
Score = 85.7 bits (43), Expect = 9e-015
Identities = 105/123 (85%), Gaps = 2/123 (1%)
Strand = Plus / Plus
Query: 141 tggcgctgcggctcaagggcctggagttcgactacgtggaggaggacctggggaacaaga 200
||||||||| |||||||| ||||| | ||| |||||||||| |||||| | |||||
Sbjct: 56 tggcgctgcacctcaagggactggactacgagtacgtggaggtggacctcgccgacaagg 115
Query: 201 gcgacgagctgctgcgccac-aaccccgtccacaagaaggtgcccgtgctcgtccacggc 259
||||| ||| || |||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 116 gcgacctgctcct-cgccaccaaccccgtccacaagaaggtgcccgtgctcctccacggc 174
Query: 260 ggc 262
|||
Sbjct: 175 ggc 177
>gb|CW190530.1|CW190530 104_612_11174553_148_36834_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174553, DNA
sequence
Length = 655
Score = 81.8 bits (41), Expect = 1e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 142 ggcgctgcggctcaagggcctggagttcgactacgtggaggaggacctggggaacaagag 201
|||||| ||||| |||||| | |||| ||| ||||| || |||||||| | ||||||||
Sbjct: 415 ggcgctccggctgaagggcgtcgagtacgagtacgtcgacgaggacctcgccaacaagag 474
Query: 202 cgacgagctgctgcgccacaaccccgtccacaagaaggtgcccgtgctcgtccacggcgg 261
|| ||| ||||| ||| ||||||| || |||||||||||||||||||||||||| |||
Sbjct: 475 cgccgacctgctccgctacaacccggtgaccaagaaggtgcccgtgctcgtccacgacgg 534
Query: 262 c 262
|
Sbjct: 535 c 535
>gb|BG559403.1|BG559403 RHIZ2_54_D07.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 261
Score = 81.8 bits (41), Expect = 1e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 142 ggcgctgcggctcaagggcctggagttcgactacgtggaggaggacctggggaacaagag 201
|||||| ||||| |||||| | |||| ||| ||||| || |||||||| | ||||||||
Sbjct: 92 ggcgctccggctgaagggcgtcgagtacgagtacgtcgacgaggacctcgccaacaagag 151
Query: 202 cgacgagctgctgcgccacaaccccgtccacaagaaggtgcccgtgctcgtccacggcgg 261
|| ||| ||||| ||| ||||||| || |||||||||||||||||||||||||| |||
Sbjct: 152 cgccgacctgctccgctacaacccggtgaccaagaaggtgcccgtgctcgtccacgacgg 211
Query: 262 c 262
|
Sbjct: 212 c 212
>gb|CD430586.1|CD430586 ETH1_19_E05.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_19_E05_A002 5', mRNA sequence
Length = 603
Score = 81.8 bits (41), Expect = 1e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 142 ggcgctgcggctcaagggcctggagttcgactacgtggaggaggacctggggaacaagag 201
|||||| ||||| |||||| | |||| ||| ||||| || |||||||| | ||||||||
Sbjct: 113 ggcgctccggctgaagggcgtcgagtacgagtacgtcgacgaggacctcgccaacaagag 172
Query: 202 cgacgagctgctgcgccacaaccccgtccacaagaaggtgcccgtgctcgtccacggcgg 261
|| ||| ||||| ||| ||||||| || |||||||||||||||||||||||||| |||
Sbjct: 173 cgccgacctgctccgctacaacccggtgaccaagaaggtgcccgtgctcgtccacgacgg 232
Query: 262 c 262
|
Sbjct: 233 c 233
>gb|CW301871.1|CW301871 104_785_11464426_148_36264_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464426, DNA
sequence
Length = 712
Score = 73.8 bits (37), Expect = 4e-011
Identities = 103/125 (82%)
Strand = Plus / Plus
Query: 141 tggcgctgcggctcaagggcctggagttcgactacgtggaggaggacctggggaacaaga 200
|||||||| |||||||||||||| | ||||||| | ||||||||||| | |||||||
Sbjct: 81 tggcgctggggctcaagggcctgagctacgactacctcgaggaggacctcgccaacaaga 140
Query: 201 gcgacgagctgctgcgccacaaccccgtccacaagaaggtgcccgtgctcgtccacggcg 260
||||| ||||| || |||||| || |||||||||||||| || ||| |||||||||
Sbjct: 141 gcgacctcctgctccggtccaacccggtgcacaagaaggtgccggtcctcatccacggcg 200
Query: 261 gccgc 265
|||||
Sbjct: 201 gccgc 205
>gb|AW286086.2|AW286086 LG1_261_C01.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 433
Score = 73.8 bits (37), Expect = 4e-011
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 220 caaccccgtccacaagaaggtgcccgtgctcgtccacggcg 260
||||||||||||||||||||||||||||||| |||||||||
Sbjct: 25 caaccccgtccacaagaaggtgcccgtgctcctccacggcg 65
>gb|CW184129.1|CW184129 104_600_11164988_116_36688_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164988, DNA
sequence
Length = 699
Score = 71.9 bits (36), Expect = 1e-010
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 217 ccacaaccccgtccacaagaaggtgcccgtgctcgtccacggcg 260
|||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 575 ccacaaccccgtccacaagaaggtccccgtgctcctccacggcg 532
Score = 40.1 bits (20), Expect = 0.49
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 326 ccgctgctccccgccgacgccttcgaccgcgc 357
||||| |||||||||||| ||| |||||||||
Sbjct: 466 ccgctcctccccgccgacccctacgaccgcgc 435
>gb|CD232788.1|CD232788 SS1_1_C02.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_1_C02_A012 5', mRNA sequence
Length = 580
Score = 71.9 bits (36), Expect = 1e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 217 ccacaaccccgtccacaagaaggtgcccgtgctcgtccacggcg 260
|||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 215 ccacaaccccgtccacaagaaggtccccgtgctcctccacggcg 258
Score = 40.1 bits (20), Expect = 0.49
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 326 ccgctgctccccgccgacgccttcgaccgcgc 357
||||| |||||||||||| ||| |||||||||
Sbjct: 324 ccgctcctccccgccgacccctacgaccgcgc 355
>gb|CD429152.1|CD429152 ETH1_2_D06.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_2_D06_A002 5', mRNA sequence
Length = 584
Score = 71.9 bits (36), Expect = 1e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 217 ccacaaccccgtccacaagaaggtgcccgtgctcgtccacggcg 260
|||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 216 ccacaaccccgtccacaagaaggtccccgtgctcctccacggcg 259
Score = 40.1 bits (20), Expect = 0.49
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 326 ccgctgctccccgccgacgccttcgaccgcgc 357
||||| |||||||||||| ||| |||||||||
Sbjct: 325 ccgctcctccccgccgacccctacgaccgcgc 356
>gb|CX610269.1|CX610269 ANR1_17_D05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_17_D05_A002 5', mRNA sequence
Length = 741
Score = 71.9 bits (36), Expect = 1e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 217 ccacaaccccgtccacaagaaggtgcccgtgctcgtccacggcg 260
|||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 203 ccacaaccccgtccacaagaaggtccccgtgctcctccacggcg 246
Score = 40.1 bits (20), Expect = 0.49
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 326 ccgctgctccccgccgacgccttcgaccgcgc 357
||||| |||||||||||| ||| |||||||||
Sbjct: 312 ccgctcctccccgccgacccctacgaccgcgc 343
>gb|CX620716.1|CX620716 GABR1_53_C06.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_53_C06_A002 5', mRNA sequence
Length = 290
Score = 71.9 bits (36), Expect = 1e-010
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 208 gctgctgcgccacaaccccgtccacaagaaggtgcccgtgctcgtccacggc 259
||||||||| ||||||||| ||||||||||||||||||||||| | ||||||
Sbjct: 146 gctgctgcggcacaaccccatccacaagaaggtgcccgtgctcctgcacggc 197
>gb|CX622414.1|CX622414 GABR1_63_G05.g2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_63_G05_A002 5', mRNA sequence
Length = 693
Score = 71.9 bits (36), Expect = 1e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 217 ccacaaccccgtccacaagaaggtgcccgtgctcgtccacggcg 260
|||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 200 ccacaaccccgtccacaagaaggtccccgtgctcctccacggcg 243
Score = 40.1 bits (20), Expect = 0.49
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 326 ccgctgctccccgccgacgccttcgaccgcgc 357
||||| |||||||||||| ||| |||||||||
Sbjct: 309 ccgctcctccccgccgacccctacgaccgcgc 340
>gb|CL187928.1|CL187928 104_404_10901237_114_32442_031 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901237, DNA
sequence
Length = 712
Score = 65.9 bits (33), Expect = 9e-009
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 152 ctcaagggcctggagttcgactacgtggaggaggacctggggaacaagagcgacgagctg 211
||||||||| || ||| ||| ||||||||||||||||||| ||||||||||| | |||
Sbjct: 641 ctcaagggcgtgcagtacgagtacgtggaggaggacctggacaacaagagcgaggccctg 582
Query: 212 ctgcgccacaaccccgtccac 232
||||||| ||||| ||||||
Sbjct: 581 ctgcgcctgaacccggtccac 561
>gb|CW492797.1|CW492797 fsbb001f283e08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f283e08, DNA
sequence
Length = 625
Score = 63.9 bits (32), Expect = 3e-008
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 208 gctgctgcgccacaaccccgtccacaagaaggtgcccgtgctcgtccacggc 259
|||| |||| ||||||||| ||||||||||||||||||||||| | ||||||
Sbjct: 588 gctgttgcggcacaaccccatccacaagaaggtgcccgtgctcctgcacggc 537
Score = 40.1 bits (20), Expect = 0.49
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 326 ccgctgctccccgccgacgccttcgaccgcgc 357
||||| |||||||||||| ||| |||||||||
Sbjct: 473 ccgctcctccccgccgacccctacgaccgcgc 442
>gb|CW023422.1|CW023422 104_163_10432441_1_30001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10432441, DNA
sequence
Length = 356
Score = 61.9 bits (31), Expect = 1e-007
Identities = 72/83 (86%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 179 gaggaggacctggggaacaagagcgacgagctgctgcgcca-caaccccgtccacaagaa 237
||||| |||||| | ||||||||||| |||||| ||||| |||||| |||||||||||
Sbjct: 80 gaggaagacctgagcaacaagagcgagctgctgct-cgccaacaaccctgtccacaagaa 138
Query: 238 ggtgcccgtgctcgtccacggcg 260
||||||||||||| |||| ||||
Sbjct: 139 ggtgcccgtgctcctccatggcg 161
>gb|CW035319.1|CW035319 104_265_10503086_114_30378 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10503086, DNA
sequence
Length = 450
Score = 61.9 bits (31), Expect = 1e-007
Identities = 72/83 (86%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 179 gaggaggacctggggaacaagagcgacgagctgctgcgcca-caaccccgtccacaagaa 237
||||| |||||| | ||||||||||| |||||| ||||| |||||| |||||||||||
Sbjct: 195 gaggaagacctgagcaacaagagcgagctgctgct-cgccaacaaccctgtccacaagaa 253
Query: 238 ggtgcccgtgctcgtccacggcg 260
||||||||||||| |||| ||||
Sbjct: 254 ggtgcccgtgctcctccatggcg 276
>gb|CW067572.1|CW067572 104_315_10524361_114_30124 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10524361, DNA
sequence
Length = 685
Score = 61.9 bits (31), Expect = 1e-007
Identities = 72/83 (86%), Gaps = 2/83 (2%)
Strand = Plus / Minus
Query: 179 gaggaggacctggggaacaagagcgacgagctgctgcgcca-caaccccgtccacaagaa 237
||||| |||||| | ||||||||||| |||||| ||||| |||||| |||||||||||
Sbjct: 510 gaggaagacctgagcaacaagagcgagctgctgct-cgccaacaaccctgtccacaagaa 452
Query: 238 ggtgcccgtgctcgtccacggcg 260
||||||||||||| |||| ||||
Sbjct: 451 ggtgcccgtgctcctccatggcg 429
>gb|CW304182.1|CW304182 104_789_11465646_148_35708_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465646, DNA
sequence
Length = 701
Score = 61.9 bits (31), Expect = 1e-007
Identities = 72/83 (86%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 179 gaggaggacctggggaacaagagcgacgagctgctgcgcca-caaccccgtccacaagaa 237
||||| |||||| | ||||||||||| |||||| ||||| |||||| |||||||||||
Sbjct: 420 gaggaagacctgagcaacaagagcgagctgctgct-cgccaacaaccctgtccacaagaa 478
Query: 238 ggtgcccgtgctcgtccacggcg 260
||||||||||||| |||| ||||
Sbjct: 479 ggtgcccgtgctcctccatggcg 501
>gb|CW386824.1|CW386824 fsbb001f070o12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f070o12, DNA
sequence
Length = 495
Score = 61.9 bits (31), Expect = 1e-007
Identities = 72/83 (86%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 179 gaggaggacctggggaacaagagcgacgagctgctgcgcca-caaccccgtccacaagaa 237
||||| |||||| | ||||||||||| |||||| ||||| |||||| |||||||||||
Sbjct: 304 gaggaagacctgagcaacaagagcgagctgctgct-cgccaacaaccctgtccacaagaa 362
Query: 238 ggtgcccgtgctcgtccacggcg 260
||||||||||||| |||| ||||
Sbjct: 363 ggtgcccgtgctcctccatggcg 385
>gb|BE362489.1|BE362489 DG1_87_C06.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 527
Score = 61.9 bits (31), Expect = 1e-007
Identities = 72/83 (86%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 179 gaggaggacctggggaacaagagcgacgagctgctgcgcca-caaccccgtccacaagaa 237
||||| |||||| | ||||||||||| |||||| ||||| |||||| |||||||||||
Sbjct: 133 gaggaagacctgagcaacaagagcgagctgctgct-cgccaacaaccctgtccacaagaa 191
Query: 238 ggtgcccgtgctcgtccacggcg 260
||||||||||||| |||| ||||
Sbjct: 192 ggtgcccgtgctcctccatggcg 214
>gb|CD431093.1|CD431093 ETH1_6_H02.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_6_H02_A002 5', mRNA sequence
Length = 597
Score = 61.9 bits (31), Expect = 1e-007
Identities = 72/83 (86%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 179 gaggaggacctggggaacaagagcgacgagctgctgcgcca-caaccccgtccacaagaa 237
||||| |||||| | ||||||||||| |||||| ||||| |||||| |||||||||||
Sbjct: 143 gaggaagacctgagcaacaagagcgagctgctgct-cgccaacaaccctgtccacaagaa 201
Query: 238 ggtgcccgtgctcgtccacggcg 260
||||||||||||| |||| ||||
Sbjct: 202 ggtgcccgtgctcctccatggcg 224
>gb|CN130948.1|CN130948 RHOH1_44_H12.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_44_H12_A002 5', mRNA sequence
Length = 835
Score = 61.9 bits (31), Expect = 1e-007
Identities = 72/83 (86%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 179 gaggaggacctggggaacaagagcgacgagctgctgcgcca-caaccccgtccacaagaa 237
||||| |||||| | ||||||||||| |||||| ||||| |||||| |||||||||||
Sbjct: 145 gaggaagacctgagcaacaagagcgagctgctgct-cgccaacaaccctgtccacaagaa 203
Query: 238 ggtgcccgtgctcgtccacggcg 260
||||||||||||| |||| ||||
Sbjct: 204 ggtgcccgtgctcctccatggcg 226
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 400,258
Number of Sequences: 832831
Number of extensions: 400258
Number of successful extensions: 119297
Number of sequences better than 0.5: 190
Number of HSP's better than 0.5 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118833
Number of HSP's gapped (non-prelim): 417
length of query: 1267
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1247
effective length of database: 474,703,049
effective search space: 591954702103
effective search space used: 591954702103
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)