BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521459.2.2
(850 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD233929.1|CD233929 SS1_5_G11.b1_A012 Salt-stressed seed... 456 e-126
gb|BG102615.1|BG102615 RHIZ2_35_B10.g1_A003 Rhizome2 (RHIZ2... 452 e-125
gb|AW923031.1|AW923031 DG1_48_C02.g1_A002 Dark Grown 1 (DG1... 448 e-124
gb|BE357096.1|BE357096 DG1_146_E08.g1_A002 Dark Grown 1 (DG... 448 e-124
gb|CD463397.1|CD463397 ETH1_44_D10.b1_A002 Ethylene-treated... 448 e-124
gb|CN129539.1|CN129539 RHOH1_36_A11.b3_A002 Acid- and alkal... 448 e-124
gb|CN131146.1|CN131146 RHOH1_46_E06.b1_A002 Acid- and alkal... 448 e-124
gb|CN142021.1|CN142021 WOUND1_3_H04.b1_A002 Wounded leaves ... 448 e-124
gb|CX613100.1|CX613100 GABR1_6_F07.b1_A002 GA- or brassinol... 448 e-124
gb|CD432779.1|CD432779 ETH1_33_H04.b1_A002 Ethylene-treated... 440 e-122
gb|CF430274.1|CF430274 PH1_27_B12.b1_A002 Phosphorous-defic... 440 e-122
gb|CN150427.1|CN150427 WOUND1_69_C11.b1_A002 Wounded leaves... 440 e-122
gb|CX617322.1|CX617322 GABR1_33_C02.b1_A002 GA- or brassino... 440 e-122
gb|CD225900.1|CD225900 CCC1_42_A11.b1_A007 Callus culture/c... 436 e-120
gb|CD226023.1|CD226023 CCC1_43_G05.b1_A007 Callus culture/c... 436 e-120
gb|BG241601.1|BG241601 RHIZ2_17_E12.g1_A003 Rhizome2 (RHIZ2... 432 e-119
gb|CN137887.1|CN137887 OX1_60_G12.b1_A002 Oxidatively-stres... 432 e-119
gb|BE363987.1|BE363987 PI1_10_F01.g1_A002 Pathogen induced ... 428 e-118
gb|BG273294.1|BG273294 OV2_25_D08.g1_A002 Ovary 2 (OV2) Sor... 428 e-118
gb|CD429535.1|CD429535 ETH1_14_A06.b1_A002 Ethylene-treated... 428 e-118
gb|CD462399.1|CD462399 ETH1_37_B04.b1_A002 Ethylene-treated... 428 e-118
gb|CF429758.1|CF429758 PH1_24_G12.b1_A002 Phosphorous-defic... 428 e-118
gb|CX623160.1|CX623160 GABR1_68_C07.b1_A002 GA- or brassino... 428 e-118
gb|BE593813.1|BE593813 WS1_102_F04.g1_A002 Water-stressed 1... 422 e-116
gb|CD429589.1|CD429589 ETH1_14_A05.b1_A002 Ethylene-treated... 422 e-116
gb|BE598537.1|BE598537 PI1_83_C11.g1_A002 Pathogen induced ... 420 e-116
gb|CN151429.1|CN151429 WOUND1_75_H12.b1_A002 Wounded leaves... 420 e-116
gb|CX613596.1|CX613596 GABR1_9_C08.b1_A002 GA- or brassinol... 412 e-113
gb|CD232377.1|CD232377 SS1_45_H01.b1_A012 Salt-stressed see... 406 e-111
gb|CN148554.1|CN148554 WOUND1_57_G10.b1_A002 Wounded leaves... 404 e-111
gb|BF587487.1|BF587487 FM1_37_A08.g1_A003 Floral-Induced Me... 400 e-110
gb|CN149020.1|CN149020 WOUND1_60_F07.b1_A002 Wounded leaves... 396 e-108
gb|CN150766.1|CN150766 WOUND1_71_G06.b1_A002 Wounded leaves... 396 e-108
gb|CN141697.1|CN141697 WOUND1_1_F11.b1_A002 Wounded leaves ... 392 e-107
gb|BG158700.1|BG158700 RHIZ2_44_B03.g1_A003 Rhizome2 (RHIZ2... 389 e-106
gb|CF431110.1|CF431110 NIT1_6_C12.b1_A002 Nitrogen-deficien... 389 e-106
gb|CD213751.1|CD213751 HS1_53_C04.b1_A012 Heat-shocked seed... 375 e-102
gb|CW055479.1|CW055479 104_296_10517125_115_30175 Sorghum m... 367 1e-099
gb|CW196923.1|CW196923 104_621_11181420_148_36819_046 Sorgh... 367 1e-099
gb|CW308396.1|CW308396 104_796_11468645_116_35730_017 Sorgh... 367 1e-099
gb|CW308397.1|CW308397 104_796_11468645_148_35738_017 Sorgh... 367 1e-099
gb|BG465840.1|BG465840 RHIZ2_45_C01.g1_A003 Rhizome2 (RHIZ2... 303 1e-080
gb|AI723942.1|AI723942 RHIZ1_36_A11.y1_A001 Rhizome1 (RHIZ1... 291 5e-077
gb|BM329200.1|BM329200 PIC1_34_F09.g1_A002 Pathogen-infecte... 291 5e-077
gb|BI075165.1|BI075165 IP1_19_B08.g1_A002 Immature pannicle... 287 8e-076
gb|AI724106.1|AI724106 RHIZ1_6_A11.y2_A001 Rhizome1 (RHIZ1)... 200 1e-049
gb|BG241440.1|BG241440 RHIZ2_49_C01.g1_A003 Rhizome2 (RHIZ2... 172 3e-041
gb|CW481168.1|CW481168 fsbb001f240j14f0 Sorghum methylation... 131 1e-028
gb|CF431689.1|CF431689 NIT1_10_A05.b1_A002 Nitrogen-deficie... 127 2e-027
gb|BG558106.1|BG558106 RHIZ2_66_H04.g1_A003 Rhizome2 (RHIZ2... 125 7e-027
gb|CN149106.1|CN149106 WOUND1_60_F07.g1_A002 Wounded leaves... 121 1e-025
gb|CW145375.1|CW145375 104_537_11138434_116_34975_033 Sorgh... 101 1e-019
gb|CL187620.1|CL187620 104_403_10901014_116_32464_089 Sorgh... 64 2e-008
gb|CW055478.1|CW055478 104_296_10517125_114_30174 Sorghum m... 64 2e-008
gb|CF430327.1|CF430327 PH1_27_B12.g1_A002 Phosphorous-defic... 64 2e-008
gb|CN142104.1|CN142104 WOUND1_3_H04.g1_A002 Wounded leaves ... 64 2e-008
gb|CN148636.1|CN148636 WOUND1_57_G10.g1_A002 Wounded leaves... 64 2e-008
gb|CN129625.1|CN129625 RHOH1_36_A11.g1_A002 Acid- and alkal... 60 4e-007
gb|CX613679.1|CX613679 GABR1_9_C08.g1_A002 GA- or brassinol... 54 2e-005
gb|CN131232.1|CN131232 RHOH1_46_E06.g1_A002 Acid- and alkal... 40 0.33
gb|CN137957.1|CN137957 OX1_60_G12.g1_A002 Oxidatively-stres... 40 0.33
gb|CX617402.1|CX617402 GABR1_33_C02.g1_A002 GA- or brassino... 40 0.33
>gb|CD233929.1|CD233929 SS1_5_G11.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_5_G11_A012 3', mRNA sequence
Length = 679
Score = 456 bits (230), Expect = e-126
Identities = 377/431 (87%), Gaps = 2/431 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 432 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 375
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 374 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 315
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||||||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 314 agctcggcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 255
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 254 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 195
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 194 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 135
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggcnnnnnnnnnaaacttcccatan 638
|||||| |||||| |||||||| ||| ||||||||||| |||| |||||||
Sbjct: 134 gctggcatgtaagattcaggggcctcctgaaacttggcctctgccacaaacatcccatag 75
Query: 639 nngatccttctggannnnncctgcaagcaggttnnntcncaaagagcactggatccagca 698
||||||| | || ||||||||||||| || |||| ||||||||||||||||
Sbjct: 74 tggatccttttagagagtgcctgcaagcaggtcgtgtcacaaacagcactggatccagca 15
Query: 699 ttaccatcact 709
|||||||||||
Sbjct: 14 ttaccatcact 4
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 524 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 465
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 464 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 412
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 609
>gb|BG102615.1|BG102615 RHIZ2_35_B10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 655
Score = 452 bits (228), Expect = e-125
Identities = 365/417 (87%), Gaps = 1/417 (0%)
Strand = Plus / Minus
Query: 293 ttcggatctggcagttttacagctacgtaaacacactcaatccagcctcctaagcaagta 352
||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||
Sbjct: 418 ttcggatctggcagttt-acagctatataagcacgctcaatccagcctcctaagcaagta 360
Query: 353 cgcgacctcaacctccttggttagcggcatgattctgtagctgtacagctcggcgaccaa 412
|||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cgcgacttgaacatccttggttagcggcatgattctgtagctgtacagctcggcgaccaa 300
Query: 413 gctcggcctgatcttgtagaccggtgggctgcccttgtccttagcaccaatgttcacctc 472
||||||||| |||||||| |||||||||||||| |||||| |||||| |||||||||||
Sbjct: 299 gctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagcaccgatgttcacctc 240
Query: 473 ttgcccgaagatcttggctttggcctccaccctgtgttcgacagcacgctccaccgtttn 532
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 239 ttgcccgaagatcttggctttggcttccaccctgtgttcgatagcacgctccaccgtttc 180
Query: 533 ntatgtgagaaggttcatgagttgatcacggtcttgggctattatggctggcgtgtaagc 592
||||||||||||| |||||| |||||| |||| |||||||||||||||||| ||||||
Sbjct: 179 atatgtgagaaggtgcatgagctgatcagggtcctgggctattatggctggcatgtaaga 120
Query: 593 ttcaggggactcttgaaacttggcnnnnnnnnnaaacttcccatannngatccttctgga 652
|||||||| ||| ||||||||||| |||| ||||||| ||||||| | ||
Sbjct: 119 ttcaggggcctcctgaaacttggcctctgccacaaacatcccatagtggatccttttaga 60
Query: 653 nnnnncctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||||| || |||| |||||||||||||||||||||||||||
Sbjct: 59 gagtgcctgcaagcaggtcgtgtcacaaacagcactggatccagcattaccatcact 3
Score = 91.7 bits (46), Expect = 1e-016
Identities = 105/122 (86%), Gaps = 2/122 (1%)
Strand = Plus / Minus
Query: 134 cgacaactccacatgatattctgcatgtttattgccacagttccacacatggtataattc 193
||||||| |||||||||||||||| ||||| | |||||| |||||||||||||||| ||
Sbjct: 530 cgacaaccccacatgatattctgcctgtttctcgccacaattccacacatggtatatttt 471
Query: 194 ccatcctctccccaaaactgggtacttactgacgttctggtttaatgccaggagttcgga 253
| ||||| || |||||| ||||||||||| || |||||| || |||||| |||||||||
Sbjct: 470 ctatcctgtcgccaaaa-tgggtacttaccgatgttctgactt-atgccacgagttcgga 413
Query: 254 tc 255
||
Sbjct: 412 tc 411
Score = 67.9 bits (34), Expect = 1e-009
Identities = 44/46 (95%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 46 aatccaacgacaatgag-agaatttactccgattcaaaagggcact 90
||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 653 aatccaacgacaatgagtataatttactccgattcaaaagggcact 608
>gb|AW923031.1|AW923031 DG1_48_C02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 750
Score = 448 bits (226), Expect = e-124
Identities = 376/431 (87%), Gaps = 2/431 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 654 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 597
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 596 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 537
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 536 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 477
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 476 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 417
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 416 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 357
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggcnnnnnnnnnaaacttcccatan 638
|||||| |||||| |||||||| ||| ||||||||||| |||| |||||||
Sbjct: 356 gctggcatgtaagattcaggggcctcctgaaacttggcctctgccacaaacatcccatag 297
Query: 639 nngatccttctggannnnncctgcaagcaggttnnntcncaaagagcactggatccagca 698
||||||| | || ||||||||||||| || |||| ||||||||||||||||
Sbjct: 296 tggatccttttagagagtgcctgcaagcaggtcgtgtcacaaacagcactggatccagca 237
Query: 699 ttaccatcact 709
|||||||||||
Sbjct: 236 ttaccatcact 226
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 746 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 687
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 686 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 634
Score = 40.1 bits (20), Expect = 0.33
Identities = 54/70 (77%)
Strand = Plus / Minus
Query: 728 tggaagangnncatcaaaatacattttccaaannnnnttnnngatattgatagantcagc 787
||||||| | |||| |||||||||||||||| || |||||| ||||| |||||
Sbjct: 207 tggaagaagttcatcgaaatacattttccaaatctctttgttgatatttatagaatcagc 148
Query: 788 nntgggatgc 797
||||||||
Sbjct: 147 aatgggatgc 138
>gb|BE357096.1|BE357096 DG1_146_E08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 681
Score = 448 bits (226), Expect = e-124
Identities = 376/431 (87%), Gaps = 2/431 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 479 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 422
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 421 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 362
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 361 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 302
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 301 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 242
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 241 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 182
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggcnnnnnnnnnaaacttcccatan 638
|||||| |||||| |||||||| ||| ||||||||||| |||| |||||||
Sbjct: 181 gctggcatgtaagattcaggggcctcctgaaacttggcctctgccacaaacatcccatag 122
Query: 639 nngatccttctggannnnncctgcaagcaggttnnntcncaaagagcactggatccagca 698
||||||| | || ||||||||||||| || |||| ||||||||||||||||
Sbjct: 121 tggatccttttagagagtgcctgcaagcaggtcgtgtcacaaacagcactggatccagca 62
Query: 699 ttaccatcact 709
|||||||||||
Sbjct: 61 ttaccatcact 51
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 571 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 512
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 511 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 459
>gb|CD463397.1|CD463397 ETH1_44_D10.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_44_D10_A002 3', mRNA sequence
Length = 798
Score = 448 bits (226), Expect = e-124
Identities = 376/431 (87%), Gaps = 2/431 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 576 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 519
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 518 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 459
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 458 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 399
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 398 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 339
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 338 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 279
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggcnnnnnnnnnaaacttcccatan 638
|||||| |||||| |||||||| ||| ||||||||||| |||| |||||||
Sbjct: 278 gctggcatgtaagattcaggggcctcctgaaacttggcctctgccacaaacatcccatag 219
Query: 639 nngatccttctggannnnncctgcaagcaggttnnntcncaaagagcactggatccagca 698
||||||| | || ||||||||||||| || |||| ||||||||||||||||
Sbjct: 218 tggatccttttagagagtgcctgcaagcaggtcgtgtcacaaacagcactggatccagca 159
Query: 699 ttaccatcact 709
|||||||||||
Sbjct: 158 ttaccatcact 148
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 668 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 609
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 608 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 556
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 753
Score = 40.1 bits (20), Expect = 0.33
Identities = 54/70 (77%)
Strand = Plus / Minus
Query: 728 tggaagangnncatcaaaatacattttccaaannnnnttnnngatattgatagantcagc 787
||||||| | |||| |||||||||||||||| || |||||| ||||| |||||
Sbjct: 129 tggaagaagttcatcgaaatacattttccaaatctctttgttgatatttatagaatcagc 70
Query: 788 nntgggatgc 797
||||||||
Sbjct: 69 aatgggatgc 60
>gb|CN129539.1|CN129539 RHOH1_36_A11.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_36_A11_A002 3', mRNA sequence
Length = 808
Score = 448 bits (226), Expect = e-124
Identities = 376/431 (87%), Gaps = 2/431 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 554 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 497
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 496 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 437
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 436 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 377
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 376 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 317
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 316 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 257
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggcnnnnnnnnnaaacttcccatan 638
|||||| |||||| |||||||| ||| ||||||||||| |||| |||||||
Sbjct: 256 gctggcatgtaagattcaggggcctcctgaaacttggcctctgccacaaacatcccatag 197
Query: 639 nngatccttctggannnnncctgcaagcaggttnnntcncaaagagcactggatccagca 698
||||||| | || ||||||||||||| || |||| ||||||||||||||||
Sbjct: 196 tggatccttttagagagtgcctgcaagcaggtcgtgtcacaaacagcactggatccagca 137
Query: 699 ttaccatcact 709
|||||||||||
Sbjct: 136 ttaccatcact 126
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 646 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 587
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 586 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 534
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 731
Score = 40.1 bits (20), Expect = 0.33
Identities = 54/70 (77%)
Strand = Plus / Minus
Query: 728 tggaagangnncatcaaaatacattttccaaannnnnttnnngatattgatagantcagc 787
||||||| | |||| |||||||||||||||| || |||||| ||||| |||||
Sbjct: 107 tggaagaagttcatcgaaatacattttccaaatctctttgttgatatttatagaatcagc 48
Query: 788 nntgggatgc 797
||||||||
Sbjct: 47 aatgggatgc 38
>gb|CN131146.1|CN131146 RHOH1_46_E06.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_46_E06_A002 3', mRNA sequence
Length = 816
Score = 448 bits (226), Expect = e-124
Identities = 376/431 (87%), Gaps = 2/431 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 595 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 538
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 537 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 478
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 477 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 418
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 417 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 358
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 357 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 298
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggcnnnnnnnnnaaacttcccatan 638
|||||| |||||| |||||||| ||| ||||||||||| |||| |||||||
Sbjct: 297 gctggcatgtaagattcaggggcctcctgaaacttggcctctgccacaaacatcccatag 238
Query: 639 nngatccttctggannnnncctgcaagcaggttnnntcncaaagagcactggatccagca 698
||||||| | || ||||||||||||| || |||| ||||||||||||||||
Sbjct: 237 tggatccttttagagagtgcctgcaagcaggtcgtgtcacaaacagcactggatccagca 178
Query: 699 ttaccatcact 709
|||||||||||
Sbjct: 177 ttaccatcact 167
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 687 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 628
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 627 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 575
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 772
Score = 40.1 bits (20), Expect = 0.33
Identities = 54/70 (77%)
Strand = Plus / Minus
Query: 728 tggaagangnncatcaaaatacattttccaaannnnnttnnngatattgatagantcagc 787
||||||| | |||| |||||||||||||||| || |||||| ||||| |||||
Sbjct: 148 tggaagaagttcatcgaaatacattttccaaatctctttgttgatatttatagaatcagc 89
Query: 788 nntgggatgc 797
||||||||
Sbjct: 88 aatgggatgc 79
>gb|CN142021.1|CN142021 WOUND1_3_H04.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_3_H04_A002 3', mRNA sequence
Length = 664
Score = 448 bits (226), Expect = e-124
Identities = 376/431 (87%), Gaps = 2/431 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 442 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 385
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 384 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 325
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 324 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 265
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 264 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 205
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 204 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 145
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggcnnnnnnnnnaaacttcccatan 638
|||||| |||||| |||||||| ||| ||||||||||| |||| |||||||
Sbjct: 144 gctggcatgtaagattcaggggcctcctgaaacttggcctctgccacaaacatcccatag 85
Query: 639 nngatccttctggannnnncctgcaagcaggttnnntcncaaagagcactggatccagca 698
||||||| | || ||||||||||||| || |||| ||||||||||||||||
Sbjct: 84 tggatccttttagagagtgcctgcaagcaggtcgtgtcacaaacagcactggatccagca 25
Query: 699 ttaccatcact 709
|||||||||||
Sbjct: 24 ttaccatcact 14
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 534 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 475
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 474 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 422
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 619
>gb|CX613100.1|CX613100 GABR1_6_F07.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_6_F07_A002 3', mRNA sequence
Length = 809
Score = 448 bits (226), Expect = e-124
Identities = 376/431 (87%), Gaps = 2/431 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 555 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 498
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 497 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 438
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 437 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 378
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 377 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 318
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 317 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 258
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggcnnnnnnnnnaaacttcccatan 638
|||||| |||||| |||||||| ||| ||||||||||| |||| |||||||
Sbjct: 257 gctggcatgtaagattcaggggcctcctgaaacttggcctctgccacaaacatcccatag 198
Query: 639 nngatccttctggannnnncctgcaagcaggttnnntcncaaagagcactggatccagca 698
||||||| | || ||||||||||||| || |||| ||||||||||||||||
Sbjct: 197 tggatccttttagagagtgcctgcaagcaggtcgtgtcacaaacagcactggatccagca 138
Query: 699 ttaccatcact 709
|||||||||||
Sbjct: 137 ttaccatcact 127
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 647 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 588
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 587 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 535
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 732
Score = 40.1 bits (20), Expect = 0.33
Identities = 54/70 (77%)
Strand = Plus / Minus
Query: 728 tggaagangnncatcaaaatacattttccaaannnnnttnnngatattgatagantcagc 787
||||||| | |||| |||||||||||||||| || |||||| ||||| |||||
Sbjct: 108 tggaagaagttcatcgaaatacattttccaaatctctttgctgatatttatagaatcagc 49
Query: 788 nntgggatgc 797
||||||||
Sbjct: 48 aatgggatgc 39
>gb|CD432779.1|CD432779 ETH1_33_H04.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_33_H04_A002 3', mRNA sequence
Length = 679
Score = 440 bits (222), Expect = e-122
Identities = 375/431 (87%), Gaps = 2/431 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 447 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 390
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||| ||||||||||||||||||||
Sbjct: 389 ctcctaagcaagtacgcgacttgaacatccttggttagcagcatgattctgtagctgtac 330
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 329 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 270
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 269 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 210
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 209 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 150
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggcnnnnnnnnnaaacttcccatan 638
|||||| |||||| |||||||| ||| ||||||||||| |||| |||||||
Sbjct: 149 gctggcatgtaagattcaggggcctcctgaaacttggcctctgccacaaacatcccatag 90
Query: 639 nngatccttctggannnnncctgcaagcaggttnnntcncaaagagcactggatccagca 698
||||||| | || ||||||||||||| || |||| ||||||||||||||||
Sbjct: 89 tggatccttttagagagtgcctgcaagcaggtcgtgtcacaaacagcactggatccagca 30
Query: 699 ttaccatcact 709
|||||||||||
Sbjct: 29 ttaccatcact 19
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 624
Score = 75.8 bits (38), Expect = 6e-012
Identities = 96/114 (84%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||| ||||||| ||||| | |||||| |||||||||||| ||| || | |||||
Sbjct: 539 ccacatgaaattctgcctgtttctcgccacaattccacacatggaatattttctatcctg 480
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| ||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 479 tcgacaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 427
>gb|CF430274.1|CF430274 PH1_27_B12.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_27_B12_A002 3', mRNA sequence
Length = 707
Score = 440 bits (222), Expect = e-122
Identities = 375/431 (87%), Gaps = 2/431 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 485 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 428
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 427 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 368
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| ||||||||||||| |||||| ||||
Sbjct: 367 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgctgctgtcctcagca 308
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 307 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 248
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 247 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 188
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggcnnnnnnnnnaaacttcccatan 638
|||||| |||||| |||||||| ||| ||||||||||| |||| |||||||
Sbjct: 187 gctggcatgtaagattcaggggcctcctgaaacttggcctctgccacaaacatcccatag 128
Query: 639 nngatccttctggannnnncctgcaagcaggttnnntcncaaagagcactggatccagca 698
||||||| | || ||||||||||||| || |||| ||||||||||||||||
Sbjct: 127 tggatccttttagagagtgcctgcaagcaggtcgtgtcacaaacagcactggatccagca 68
Query: 699 ttaccatcact 709
|||||||||||
Sbjct: 67 ttaccatcact 57
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 577 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 518
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 517 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 465
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 662
>gb|CN150427.1|CN150427 WOUND1_69_C11.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_69_C11_A002 3', mRNA sequence
Length = 751
Score = 440 bits (222), Expect = e-122
Identities = 375/431 (87%), Gaps = 2/431 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 544 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 487
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 486 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 427
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 426 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 367
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 366 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 307
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 306 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcaaggtcctgggctattatg 247
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggcnnnnnnnnnaaacttcccatan 638
|||||| |||||| |||||||| ||| ||||||||||| |||| |||||||
Sbjct: 246 gctggcatgtaagattcaggggcctcctgaaacttggcctctgccacaaacatcccataa 187
Query: 639 nngatccttctggannnnncctgcaagcaggttnnntcncaaagagcactggatccagca 698
||||||| | || ||||||| ||||| || |||| ||||||||||||||||
Sbjct: 186 tggatccttttagagagtgcctgcaaacaggtcgtgtcacaaacagcactggatccagca 127
Query: 699 ttaccatcact 709
|||||||||||
Sbjct: 126 ttaccatcact 116
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 636 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 577
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 576 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 524
Score = 61.9 bits (31), Expect = 9e-008
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 59 tgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||
Sbjct: 751 tgagagaatttactccgattcaaaagggcac 721
Score = 40.1 bits (20), Expect = 0.33
Identities = 54/70 (77%)
Strand = Plus / Minus
Query: 728 tggaagangnncatcaaaatacattttccaaannnnnttnnngatattgatagantcagc 787
||||||| | |||| |||||||||||||||| || |||||| ||||| |||||
Sbjct: 97 tggaagaagttcatcgaaatacattttccaaatctctttgttgatatttatagaatcagc 38
Query: 788 nntgggatgc 797
||||||||
Sbjct: 37 aatgggatgc 28
>gb|CX617322.1|CX617322 GABR1_33_C02.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_33_C02_A002 3', mRNA sequence
Length = 818
Score = 440 bits (222), Expect = e-122
Identities = 375/431 (87%), Gaps = 2/431 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 554 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 497
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||| | | ||| |||||||||||||||||||||||||||||||||
Sbjct: 496 ctcctaagcaagtacgcggcttgaacatccttggttagcggcatgattctgtagctgtac 437
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 436 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 377
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 376 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 317
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 316 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 257
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggcnnnnnnnnnaaacttcccatan 638
|||||| |||||| |||||||| ||| ||||||||||| |||| |||||||
Sbjct: 256 gctggcatgtaagattcaggggcctcctgaaacttggcctctgccacaaacatcccatag 197
Query: 639 nngatccttctggannnnncctgcaagcaggttnnntcncaaagagcactggatccagca 698
||||||| | || ||||||||||||| || |||| ||||||||||||||||
Sbjct: 196 tggatccttttagagagtgcctgcaagcaggtcgtgtcacaaacagcactggatccagca 137
Query: 699 ttaccatcact 709
|||||||||||
Sbjct: 136 ttaccatcact 126
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 646 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 587
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 586 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 534
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 731
Score = 40.1 bits (20), Expect = 0.33
Identities = 54/70 (77%)
Strand = Plus / Minus
Query: 728 tggaagangnncatcaaaatacattttccaaannnnnttnnngatattgatagantcagc 787
||||||| | |||| |||||||||||||||| || |||||| ||||| |||||
Sbjct: 107 tggaagaagttcatcgaaatacattttccaaatctctttgttgatatttatagaatcagc 48
Query: 788 nntgggatgc 797
||||||||
Sbjct: 47 aatgggatgc 38
>gb|CD225900.1|CD225900 CCC1_42_A11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_42_A11_A007 3', mRNA sequence
Length = 611
Score = 436 bits (220), Expect = e-120
Identities = 310/338 (91%), Gaps = 2/338 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 369 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 312
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 311 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 252
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||||||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 251 agctcggcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 192
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 191 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 132
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 131 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 72
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggc 616
|||||| |||||| |||||||| ||| |||||||||||
Sbjct: 71 gctggcatgtaagattcaggggcctcctgaaacttggc 34
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 461 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 402
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 401 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 349
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 546
>gb|CD226023.1|CD226023 CCC1_43_G05.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_43_G05_A007 3', mRNA sequence
Length = 616
Score = 436 bits (220), Expect = e-120
Identities = 310/338 (91%), Gaps = 2/338 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 369 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 312
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 311 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 252
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||||||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 251 agctcggcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 192
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 191 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 132
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 131 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 72
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggc 616
|||||| |||||| |||||||| ||| |||||||||||
Sbjct: 71 gctggcatgtaagattcaggggcctcctgaaacttggc 34
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 461 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 402
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 401 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 349
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 546
>gb|BG241601.1|BG241601 RHIZ2_17_E12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 647
Score = 432 bits (218), Expect = e-119
Identities = 298/324 (91%), Gaps = 1/324 (0%)
Strand = Plus / Minus
Query: 293 ttcggatctggcagttttacagctacgtaaacacactcaatccagcctcctaagcaagta 352
||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||
Sbjct: 434 ttcggatctggcagttt-acagctatataagcacgctcaatccagcctcctaagcaagta 376
Query: 353 cgcgacctcaacctccttggttagcggcatgattctgtagctgtacagctcggcgaccaa 412
|||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cgcgacttgaacatccttggttagcggcatgattctgtagctgtacagctcggcgaccaa 316
Query: 413 gctcggcctgatcttgtagaccggtgggctgcccttgtccttagcaccaatgttcacctc 472
||||||||| |||||||| |||||||||||||| |||||| |||||| |||||||||||
Sbjct: 315 gctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagcaccgatgttcacctc 256
Query: 473 ttgcccgaagatcttggctttggcctccaccctgtgttcgacagcacgctccaccgtttn 532
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 255 ttgcccgaagatcttggctttggcttccaccctgtgttcgatagcacgctccaccgtttc 196
Query: 533 ntatgtgagaaggttcatgagttgatcacggtcttgggctattatggctggcgtgtaagc 592
||||||||||||| |||||| |||||| |||| |||||||||||||||||| ||||||
Sbjct: 195 atatgtgagaaggtgcatgagctgatcagggtcctgggctattatggctggcatgtaaga 136
Query: 593 ttcaggggactcttgaaacttggc 616
|||||||| ||| |||||||||||
Sbjct: 135 ttcaggggcctcctgaaacttggc 112
Score = 91.7 bits (46), Expect = 1e-016
Identities = 105/122 (86%), Gaps = 2/122 (1%)
Strand = Plus / Minus
Query: 134 cgacaactccacatgatattctgcatgtttattgccacagttccacacatggtataattc 193
||||||| |||||||||||||||| ||||| | |||||| |||||||||||||||| ||
Sbjct: 546 cgacaaccccacatgatattctgcctgtttctcgccacaattccacacatggtatatttt 487
Query: 194 ccatcctctccccaaaactgggtacttactgacgttctggtttaatgccaggagttcgga 253
| ||||| || |||||| ||||||||||| || |||||| || |||||| |||||||||
Sbjct: 486 ctatcctgtcgccaaaa-tgggtacttaccgatgttctgactt-atgccacgagttcgga 429
Query: 254 tc 255
||
Sbjct: 428 tc 427
Score = 63.9 bits (32), Expect = 2e-008
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||||| || |||| |||||||||||||||||||||||||||
Sbjct: 70 cctgcaagcaggtcgtgtcacaaacagcactggatccagcattaccatcact 19
>gb|CN137887.1|CN137887 OX1_60_G12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_60_G12_A002 3', mRNA sequence
Length = 647
Score = 432 bits (218), Expect = e-119
Identities = 374/431 (86%), Gaps = 2/431 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| || |||||||||||
Sbjct: 559 ttaatgccacgagtt-cggatctggcagttt-acagctatataaggacgctcaatccagc 502
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 501 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 442
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 441 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 382
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 381 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 322
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 321 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 262
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggcnnnnnnnnnaaacttcccatan 638
|||||| |||||| |||||||| ||| ||||||||||| |||| |||||||
Sbjct: 261 gctggcatgtaagattcaggggcctcctgaaacttggcctctgccacaaacatcccatag 202
Query: 639 nngatccttctggannnnncctgcaagcaggttnnntcncaaagagcactggatccagca 698
||||||| | || |||||||||||| || |||| ||||||||||||||||
Sbjct: 201 tggatccttttagagagtgcctgcaagcagggcgtgtcacaaacagcactggatccagca 142
Query: 699 ttaccatcact 709
|||||||||||
Sbjct: 141 ttaccatcact 131
Score = 75.8 bits (38), Expect = 6e-012
Identities = 93/110 (84%), Gaps = 1/110 (0%)
Strand = Plus / Minus
Query: 146 atgatattctgcatgtttattgccacagttccacacatggtataattcccatcctctccc 205
|||||||||||| ||||| | |||||| |||||||||||| ||| || | ||||| || |
Sbjct: 647 atgatattctgcctgtttctcgccacaattccacacatgggatattttctatcctgtcgc 588
Query: 206 caaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
||||| ||||||||||| || ||| || ||||||||| |||||||||||
Sbjct: 587 caaaa-tgggtacttaccgatgttttgacttaatgccacgagttcggatc 539
Score = 40.1 bits (20), Expect = 0.33
Identities = 54/70 (77%)
Strand = Plus / Minus
Query: 728 tggaagangnncatcaaaatacattttccaaannnnnttnnngatattgatagantcagc 787
||||||| | |||| |||||||||||||||| || |||||| ||||| |||||
Sbjct: 112 tggaagaagttcatcgaaatacattttccaaatctctttgttgatatttatagaatcagc 53
Query: 788 nntgggatgc 797
||||||||
Sbjct: 52 aatgggatgc 43
>gb|BE363987.1|BE363987 PI1_10_F01.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 610
Score = 428 bits (216), Expect = e-118
Identities = 309/338 (91%), Gaps = 2/338 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 338 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 281
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 280 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 221
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 220 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 161
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 160 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 101
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 100 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 41
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggc 616
|||||| |||||| |||||||| ||| |||||||||||
Sbjct: 40 gctggcatgtaagattcaggggcctcctgaaacttggc 3
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 430 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 371
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 370 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 318
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 515
>gb|BG273294.1|BG273294 OV2_25_D08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 505
Score = 428 bits (216), Expect = e-118
Identities = 309/338 (91%), Gaps = 2/338 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 383 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 326
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 325 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 266
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 265 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 206
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 205 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 146
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 145 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 86
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggc 616
|||||| |||||| |||||||| ||| |||||||||||
Sbjct: 85 gctggcatgtaagattcaggggcctcctgaaacttggc 48
Score = 91.7 bits (46), Expect = 1e-016
Identities = 98/114 (85%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| |||| | |||||| |||||||||||||||| || | |||||
Sbjct: 475 ccacatgatattctgcctgttgctcgccacaattccacacatggtatattttctatcctg 416
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 415 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 363
>gb|CD429535.1|CD429535 ETH1_14_A06.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_14_A06_A002 3', mRNA sequence
Length = 680
Score = 428 bits (216), Expect = e-118
Identities = 309/338 (91%), Gaps = 2/338 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 433 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 376
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 375 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 316
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 315 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 256
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 255 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 196
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 195 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 136
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggc 616
|||||| |||||| |||||||| ||| |||||||||||
Sbjct: 135 gctggcatgtaagattcaggggcctcctgaaacttggc 98
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 525 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 466
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 465 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 413
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 610
>gb|CD462399.1|CD462399 ETH1_37_B04.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_37_B04_A002 3', mRNA sequence
Length = 613
Score = 428 bits (216), Expect = e-118
Identities = 309/338 (91%), Gaps = 2/338 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 369 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 312
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 311 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 252
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 251 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 192
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 191 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 132
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 131 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 72
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggc 616
|||||| |||||| |||||||| ||| |||||||||||
Sbjct: 71 gctggcatgtaagattcaggggcctcctgaaacttggc 34
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 461 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 402
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 401 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 349
Score = 81.8 bits (41), Expect = 1e-013
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagg 85
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aaatccaacgacaatgagagaatttactccgattcaaaagg 550
>gb|CF429758.1|CF429758 PH1_24_G12.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_24_G12_A002 3', mRNA sequence
Length = 611
Score = 428 bits (216), Expect = e-118
Identities = 309/338 (91%), Gaps = 2/338 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 369 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 312
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 311 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 252
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 251 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 192
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 191 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 132
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 131 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 72
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggc 616
|||||| |||||| |||||||| ||| |||||||||||
Sbjct: 71 gctggcatgtaagattcaggggcctcctgaaacttggc 34
Score = 91.7 bits (46), Expect = 1e-016
Identities = 98/114 (85%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| | | |||||
Sbjct: 461 ccacatgatattctgcctgtttctcgccacaattccacacatggtatatcttctatcctg 402
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 401 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 349
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 546
>gb|CX623160.1|CX623160 GABR1_68_C07.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_68_C07_A002 3', mRNA sequence
Length = 641
Score = 428 bits (216), Expect = e-118
Identities = 309/338 (91%), Gaps = 2/338 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 387 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 330
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 329 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 270
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 269 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 210
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 209 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 150
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 149 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 90
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggc 616
|||||| |||||| |||||||| ||| |||||||||||
Sbjct: 89 gctggcatgtaagattcaggggcctcctgaaacttggc 52
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 479 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 420
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 419 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 367
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 564
>gb|BE593813.1|BE593813 WS1_102_F04.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 626
Score = 422 bits (213), Expect = e-116
Identities = 308/338 (91%), Gaps = 2/338 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 431 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 374
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 373 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 314
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 313 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 254
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 253 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 194
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| || |||||||||
Sbjct: 193 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgngctattatg 134
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggc 616
|||||| |||||| |||||||| ||| |||||||||||
Sbjct: 133 gctggcatgtaagattcaggggcctcctgaaacttggc 96
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 523 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 464
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 463 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 411
Score = 63.9 bits (32), Expect = 2e-008
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||||| || |||| |||||||||||||||||||||||||||
Sbjct: 54 cctgcaagcaggtcgtgtcacaaacagcactggatccagcattaccatcact 3
>gb|CD429589.1|CD429589 ETH1_14_A05.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_14_A05_A002 3', mRNA sequence
Length = 600
Score = 422 bits (213), Expect = e-116
Identities = 308/338 (91%), Gaps = 2/338 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 356 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 299
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 298 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 239
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 238 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 179
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 178 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 119
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| || |||||||||
Sbjct: 118 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgngctattatg 59
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggc 616
|||||| |||||| |||||||| ||| |||||||||||
Sbjct: 58 gctggcatgtaagattcaggggcctcctgaaacttggc 21
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 448 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 389
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 388 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 336
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 533
>gb|BE598537.1|BE598537 PI1_83_C11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 661
Score = 420 bits (212), Expect = e-116
Identities = 308/338 (91%), Gaps = 2/338 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 438 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 381
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 380 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 321
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| | ||
Sbjct: 320 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcatca 261
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 260 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 201
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 200 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 141
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggc 616
|||||| |||||| |||||||| ||| |||||||||||
Sbjct: 140 gctggcatgtaagattcaggggcctcctgaaacttggc 103
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 530 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 471
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 470 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 418
Score = 87.7 bits (44), Expect = 2e-015
Identities = 44/44 (100%)
Strand = Plus / Minus
Query: 46 aatccaacgacaatgagagaatttactccgattcaaaagggcac 89
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aatccaacgacaatgagagaatttactccgattcaaaagggcac 615
Score = 56.0 bits (28), Expect = 5e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 678 caaagagcactggatccagcattaccatcact 709
|||| |||||||||||||||||||||||||||
Sbjct: 41 caaacagcactggatccagcattaccatcact 10
>gb|CN151429.1|CN151429 WOUND1_75_H12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_75_H12_A002 3', mRNA sequence
Length = 760
Score = 420 bits (212), Expect = e-116
Identities = 308/338 (91%), Gaps = 2/338 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 553 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 496
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 495 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 436
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| |||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 435 agctcaacgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 376
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 375 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 316
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 315 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 256
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggc 616
|||||| |||||| |||||||| ||| |||||||||||
Sbjct: 255 gctggcatgtaagattcaggggcctcctgaaacttggc 218
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 645 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 586
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 585 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 533
Score = 63.9 bits (32), Expect = 2e-008
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||||| || |||| |||||||||||||||||||||||||||
Sbjct: 176 cctgcaagcaggtcgtgtcacaaacagcactggatccagcattaccatcact 125
Score = 61.9 bits (31), Expect = 9e-008
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 59 tgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||
Sbjct: 760 tgagagaatttactccgattcaaaagggcac 730
Score = 40.1 bits (20), Expect = 0.33
Identities = 54/70 (77%)
Strand = Plus / Minus
Query: 728 tggaagangnncatcaaaatacattttccaaannnnnttnnngatattgatagantcagc 787
||||||| | |||| |||||||||||||||| || |||||| ||||| |||||
Sbjct: 106 tggaagaagttcatcgaaatacattttccaaatctctttgttgatatttatagaatcagc 47
Query: 788 nntgggatgc 797
||||||||
Sbjct: 46 aatgggatgc 37
>gb|CX613596.1|CX613596 GABR1_9_C08.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_9_C08_A002 3', mRNA sequence
Length = 614
Score = 412 bits (208), Expect = e-113
Identities = 307/338 (90%), Gaps = 2/338 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 368 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 311
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 310 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 251
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 250 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 191
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 190 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 131
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||| ||||| |||||| |||||| |||| ||||||||||||
Sbjct: 130 cgctccaccgtttcatatgtgaaaaggtgcatgagctgatcagggtcctgggctattatg 71
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggc 616
|||||| ||||| |||||||| ||| |||||||||||
Sbjct: 70 gctggcatgtaaaattcaggggcctcctgaaacttggc 33
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 460 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 401
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 400 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 348
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 545
>gb|CD232377.1|CD232377 SS1_45_H01.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_45_H01_A012 3', mRNA sequence
Length = 526
Score = 406 bits (205), Expect = e-111
Identities = 286/311 (91%), Gaps = 2/311 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 309 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 252
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 251 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 192
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||||||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 191 agctcggcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 132
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 131 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 72
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 71 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 12
Query: 579 gctggcgtgta 589
|||||| ||||
Sbjct: 11 gctggcatgta 1
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 401 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 342
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 341 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 289
Score = 75.8 bits (38), Expect = 6e-012
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 52 acgacaatgagagaatttactccgattcaaaagggcac 89
||||||||||||||||||||||||||||||||||||||
Sbjct: 523 acgacaatgagagaatttactccgattcaaaagggcac 486
>gb|CN148554.1|CN148554 WOUND1_57_G10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_57_G10_A002 3', mRNA sequence
Length = 737
Score = 404 bits (204), Expect = e-111
Identities = 306/338 (90%), Gaps = 2/338 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||| ||| ||| ||| |||||||||||
Sbjct: 530 ttaatgccacgagtt-cggatctggcagttt-acaactatataagcacgctcaatccagc 473
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
||||||| |||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 472 ctcctaaacaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 413
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| |||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 412 agctcaacgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 353
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 352 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 293
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 292 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 233
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggc 616
|||||| |||||| |||||||| ||| |||||||||||
Sbjct: 232 gctggcatgtaagattcaggggcctcctgaaacttggc 195
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 622 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 563
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 562 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 510
Score = 63.9 bits (32), Expect = 2e-008
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||||| || |||| |||||||||||||||||||||||||||
Sbjct: 153 cctgcaagcaggtcgtgtcacaaacagcactggatccagcattaccatcact 102
Score = 61.9 bits (31), Expect = 9e-008
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 59 tgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||
Sbjct: 737 tgagagaatttactccgattcaaaagggcac 707
Score = 40.1 bits (20), Expect = 0.33
Identities = 54/70 (77%)
Strand = Plus / Minus
Query: 728 tggaagangnncatcaaaatacattttccaaannnnnttnnngatattgatagantcagc 787
||||||| | |||| |||||||||||||||| || |||||| ||||| |||||
Sbjct: 83 tggaagaagttcatcgaaatacattttccaaatctctttgttgatatttatagaatcagc 24
Query: 788 nntgggatgc 797
||||||||
Sbjct: 23 aatgggatgc 14
>gb|BF587487.1|BF587487 FM1_37_A08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 474
Score = 400 bits (202), Expect = e-110
Identities = 275/299 (91%), Gaps = 1/299 (0%)
Strand = Plus / Minus
Query: 293 ttcggatctggcagttttacagctacgtaaacacactcaatccagcctcctaagcaagta 352
||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||
Sbjct: 300 ttcggatctggcagttt-acagctatataagcacgctcaatccagcctcctaagcaagta 242
Query: 353 cgcgacctcaacctccttggttagcggcatgattctgtagctgtacagctcggcgaccaa 412
|||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cgcgacttgaacatccttggttagcggcatgattctgtagctgtacagctcggcgaccaa 182
Query: 413 gctcggcctgatcttgtagaccggtgggctgcccttgtccttagcaccaatgttcacctc 472
||||||||| |||||||| |||||||||||||| |||||| |||||| |||||||||||
Sbjct: 181 gctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagcaccgatgttcacctc 122
Query: 473 ttgcccgaagatcttggctttggcctccaccctgtgttcgacagcacgctccaccgtttn 532
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 121 ttgcccgaagatcttggctttggcttccaccctgtgttcgatagcacgctccaccgtttc 62
Query: 533 ntatgtgagaaggttcatgagttgatcacggtcttgggctattatggctggcgtgtaag 591
||||||||||||| |||||| |||||| |||| || ||||||||||||||| ||||||
Sbjct: 61 atatgtgagaaggtgcatgagctgatcagggtcctgngctattatggctggcatgtaag 3
Score = 91.7 bits (46), Expect = 1e-016
Identities = 105/122 (86%), Gaps = 2/122 (1%)
Strand = Plus / Minus
Query: 134 cgacaactccacatgatattctgcatgtttattgccacagttccacacatggtataattc 193
||||||| |||||||||||||||| ||||| | |||||| |||||||||||||||| ||
Sbjct: 412 cgacaaccccacatgatattctgcctgtttctcgccacaattccacacatggtatatttt 353
Query: 194 ccatcctctccccaaaactgggtacttactgacgttctggtttaatgccaggagttcgga 253
| ||||| || |||||| ||||||||||| || |||||| || |||||| |||||||||
Sbjct: 352 ctatcctgtcgccaaaa-tgggtacttaccgatgttctgactt-atgccacgagttcgga 295
Query: 254 tc 255
||
Sbjct: 294 tc 293
>gb|CN149020.1|CN149020 WOUND1_60_F07.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_60_F07_A002 3', mRNA sequence
Length = 657
Score = 396 bits (200), Expect = e-108
Identities = 305/338 (90%), Gaps = 2/338 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 383 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 326
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 325 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 266
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| |||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 265 agctcaacgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 206
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 205 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 146
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||| ||||| ||||| |||||| |||| ||||||||||||
Sbjct: 145 cgctccaccgtttcatatgtgaaaaggtgcatgaactgatcagggtcctgggctattatg 86
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggc 616
|||||| ||||| |||||||| ||| |||||||||||
Sbjct: 85 gctggcatgtaaaattcaggggcctcctgaaacttggc 48
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 475 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 416
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 415 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 363
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 560
>gb|CN150766.1|CN150766 WOUND1_71_G06.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_71_G06_A002 3', mRNA sequence
Length = 757
Score = 396 bits (200), Expect = e-108
Identities = 305/338 (90%), Gaps = 2/338 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 555 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 498
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
||||||| |||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 497 ctcctaaacaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 438
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| |||||||| |||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 437 agctcagcgaccaaactcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 378
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct: 377 ccgatgttcacctcttgccccaagatcttggctttggcttccaccctgtgttcgatagca 318
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| ||||| |||||| |||| ||||||||||||
Sbjct: 317 cgctccaccgtttcatatgtgagaaggtgcatgaactgatcagggtcctgggctattatg 258
Query: 579 gctggcgtgtaagcttcaggggactcttgaaacttggc 616
|||||| |||||| |||||||| ||| |||||||||||
Sbjct: 257 gctggcatgtaagattcaggggcctcctgaaacttggc 220
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 647 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 588
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 587 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 535
Score = 63.9 bits (32), Expect = 2e-008
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||||| || |||| |||||||||||||||||||||||||||
Sbjct: 178 cctgcaagcaggtcgtgtcacaaacagcactggatccagcattaccatcact 127
Score = 52.0 bits (26), Expect = 9e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 64 gaatttactccgattcaaaagggcac 89
||||||||||||||||||||||||||
Sbjct: 757 gaatttactccgattcaaaagggcac 732
>gb|CN141697.1|CN141697 WOUND1_1_F11.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_1_F11_A002 3', mRNA sequence
Length = 544
Score = 392 bits (198), Expect = e-107
Identities = 279/304 (91%), Gaps = 2/304 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 302 ttaatgccacgagtt-cggatctggcagttt-acagctatataaccacgctcaatccagc 245
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 244 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 185
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 184 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 125
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 124 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 65
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 64 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 5
Query: 579 gctg 582
||||
Sbjct: 4 gctg 1
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 394 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 335
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 334 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 282
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 479
>gb|BG158700.1|BG158700 RHIZ2_44_B03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 494
Score = 389 bits (196), Expect = e-106
Identities = 264/286 (92%), Gaps = 1/286 (0%)
Strand = Plus / Minus
Query: 293 ttcggatctggcagttttacagctacgtaaacacactcaatccagcctcctaagcaagta 352
||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||
Sbjct: 285 ttcggatctggcagttt-acagctatataagcacgctcaatccagcctcctaagcaagta 227
Query: 353 cgcgacctcaacctccttggttagcggcatgattctgtagctgtacagctcggcgaccaa 412
|||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 cgcgacttgaacatccttggttagcggcatgattctgtagctgtacagctcggcgaccaa 167
Query: 413 gctcggcctgatcttgtagaccggtgggctgcccttgtccttagcaccaatgttcacctc 472
||||||||| |||||||| |||||||||||||| |||||| |||||| |||||||||||
Sbjct: 166 gctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagcaccgatgttcacctc 107
Query: 473 ttgcccgaagatcttggctttggcctccaccctgtgttcgacagcacgctccaccgtttn 532
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 106 ttgcccgaagatcttggctttggcttccaccctgtgttcgatagcacgctccaccgtttc 47
Query: 533 ntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| |||||| |||||| |||| ||||||||||||
Sbjct: 46 atatgtgagaaggtgcatgagctgatcagggtcctgggctattatg 1
Score = 91.7 bits (46), Expect = 1e-016
Identities = 105/122 (86%), Gaps = 2/122 (1%)
Strand = Plus / Minus
Query: 134 cgacaactccacatgatattctgcatgtttattgccacagttccacacatggtataattc 193
||||||| |||||||||||||||| ||||| | |||||| |||||||||||||||| ||
Sbjct: 397 cgacaaccccacatgatattctgcctgtttctcgccacaattccacacatggtatatttt 338
Query: 194 ccatcctctccccaaaactgggtacttactgacgttctggtttaatgccaggagttcgga 253
| ||||| || |||||| ||||||||||| || |||||| || |||||| |||||||||
Sbjct: 337 ctatcctgtcgccaaaa-tgggtacttaccgatgttctgactt-atgccacgagttcgga 280
Query: 254 tc 255
||
Sbjct: 279 tc 278
>gb|CF431110.1|CF431110 NIT1_6_C12.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_6_C12_A002 3', mRNA sequence
Length = 514
Score = 389 bits (196), Expect = e-106
Identities = 280/306 (91%), Gaps = 2/306 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 305 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 248
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 247 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 188
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 187 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 128
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 127 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 68
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttgggctattatg 578
||||||||||||| ||||||||||||| ||||| |||||| |||| ||||||||||||
Sbjct: 67 cgctccaccgtttcatatgtgagaaggtgcatgaactgatcagggtcctgggctattatg 8
Query: 579 gctggc 584
||||||
Sbjct: 7 gctggc 2
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 397 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 338
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 337 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 285
Score = 65.9 bits (33), Expect = 6e-009
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 57 aatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||
Sbjct: 514 aatgagagaatttactccgattcaaaagggcac 482
>gb|CD213751.1|CD213751 HS1_53_C04.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_53_C04_A012 3', mRNA sequence
Length = 608
Score = 375 bits (189), Expect = e-102
Identities = 264/287 (91%), Gaps = 2/287 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 364 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 307
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 306 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 247
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||||||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 246 agctcggcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 187
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 186 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 127
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtc 565
||||||||||||| ||||||||||||| |||||| |||||| ||||
Sbjct: 126 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtc 80
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 456 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 397
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 396 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 344
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 541
>gb|CW055479.1|CW055479 104_296_10517125_115_30175 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10517125, DNA
sequence
Length = 525
Score = 367 bits (185), Expect = 1e-099
Identities = 263/287 (91%), Gaps = 2/287 (0%)
Strand = Plus / Plus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 231 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 288
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 289 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 348
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 349 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 408
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 409 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 468
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtc 565
||||||||||||| ||||||||||||| |||||| |||||| ||||
Sbjct: 469 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtc 515
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Plus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 139 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 198
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 199 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 251
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 54
>gb|CW196923.1|CW196923 104_621_11181420_148_36819_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181420, DNA
sequence
Length = 727
Score = 367 bits (185), Expect = 1e-099
Identities = 263/287 (91%), Gaps = 2/287 (0%)
Strand = Plus / Plus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 283 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 340
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 341 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 400
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 401 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 460
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 461 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 520
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtc 565
||||||||||||| ||||||||||||| |||||| |||||| ||||
Sbjct: 521 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtc 567
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Plus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 191 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 250
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 251 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 303
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 106
>gb|CW308396.1|CW308396 104_796_11468645_116_35730_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468645, DNA
sequence
Length = 706
Score = 367 bits (185), Expect = 1e-099
Identities = 263/287 (91%), Gaps = 2/287 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 565 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 508
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 507 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 448
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 447 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 388
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 387 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 328
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtc 565
||||||||||||| ||||||||||||| |||||| |||||| ||||
Sbjct: 327 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtc 281
Score = 91.7 bits (46), Expect = 1e-016
Identities = 98/114 (85%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| | |||||||||||||| || | |||||
Sbjct: 657 ccacatgatattctgcctgtttctcgccacaatcccacacatggtatattttctatcctg 598
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 597 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 545
Score = 67.9 bits (34), Expect = 1e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 567 tgggctattatggctggcgtgtaagcttcaggggactcttgaaacttggc 616
|||||||||||||||||| |||||| |||||||| ||| |||||||||||
Sbjct: 139 tgggctattatggctggcatgtaagattcaggggcctcctgaaacttggc 90
>gb|CW308397.1|CW308397 104_796_11468645_148_35738_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468645, DNA
sequence
Length = 722
Score = 367 bits (185), Expect = 1e-099
Identities = 263/287 (91%), Gaps = 2/287 (0%)
Strand = Plus / Plus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 283 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 340
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 341 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 400
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 401 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 460
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagca 518
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 461 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccctgtgttcgatagca 520
Query: 519 cgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtc 565
||||||||||||| ||||||||||||| |||||| |||||| ||||
Sbjct: 521 cgctccaccgtttcatatgtgagaaggtgcatgagctgatcagggtc 567
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Plus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 191 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 250
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 251 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 303
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 106
>gb|BG465840.1|BG465840 RHIZ2_45_C01.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 460
Score = 303 bits (153), Expect = 1e-080
Identities = 205/221 (92%), Gaps = 1/221 (0%)
Strand = Plus / Minus
Query: 293 ttcggatctggcagttttacagctacgtaaacacactcaatccagcctcctaagcaagta 352
||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||
Sbjct: 224 ttcggatctggcagttt-acagctatataagcacgctcaatccagcctcctaagcaagta 166
Query: 353 cgcgacctcaacctccttggttagcggcatgattctgtagctgtacagctcggcgaccaa 412
|||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 cgcgacttgaacatccttggttagcggcatgattctgtagctgtacagctcggcgaccaa 106
Query: 413 gctcggcctgatcttgtagaccggtgggctgcccttgtccttagcaccaatgttcacctc 472
||||||||| |||||||| |||||||||||||| |||||| | |||| |||||||||||
Sbjct: 105 gctcggcctcatcttgtaaaccggtgggctgccgctgtcctcaacaccgatgttcacctc 46
Query: 473 ttgcccgaagatcttggctttggcctccaccctgtgttcga 513
|||||||||||||||||||||||| ||||||||||||||||
Sbjct: 45 ttgcccgaagatcttggctttggcttccaccctgtgttcga 5
Score = 91.7 bits (46), Expect = 1e-016
Identities = 105/122 (86%), Gaps = 2/122 (1%)
Strand = Plus / Minus
Query: 134 cgacaactccacatgatattctgcatgtttattgccacagttccacacatggtataattc 193
||||||| |||||||||||||||| ||||| | |||||| |||||||||||||||| ||
Sbjct: 336 cgacaaccccacatgatattctgcctgtttctcgccacaattccacacatggtatatttt 277
Query: 194 ccatcctctccccaaaactgggtacttactgacgttctggtttaatgccaggagttcgga 253
| ||||| || |||||| ||||||||||| || |||||| || |||||| |||||||||
Sbjct: 276 ctatcctgtcgccaaaa-tgggtacttaccgatgttctgactt-atgccacgagttcgga 219
Query: 254 tc 255
||
Sbjct: 218 tc 217
Score = 61.9 bits (31), Expect = 9e-008
Identities = 45/47 (95%), Gaps = 2/47 (4%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgag-agaatttac-tccgattcaaaagggcac 89
|||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 459 aaatccaacgacaatgagaagaatttacttccgattcaaaagggcac 413
>gb|AI723942.1|AI723942 RHIZ1_36_A11.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 391
Score = 291 bits (147), Expect = 5e-077
Identities = 193/207 (93%), Gaps = 1/207 (0%)
Strand = Plus / Minus
Query: 293 ttcggatctggcagttttacagctacgtaaacacactcaatccagcctcctaagcaagta 352
||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||
Sbjct: 210 ttcggatctggcagttt-acagctatataagcacgctcaatccagcctcctaagcaagta 152
Query: 353 cgcgacctcaacctccttggttagcggcatgattctgtagctgtacagctcggcgaccaa 412
|||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 cgcgacttgaacatccttggttagcggcatgattctgtagctgtacagctcggcgaccaa 92
Query: 413 gctcggcctgatcttgtagaccggtgggctgcccttgtccttagcaccaatgttcacctc 472
||||||||| |||||||| |||||||||||||| |||||| |||||| |||||||||||
Sbjct: 91 gctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagcaccgatgttcacctc 32
Query: 473 ttgcccgaagatcttggctttggcctc 499
|||||||||||||||||||||||||||
Sbjct: 31 ttgcccgaagatcttggctttggcctc 5
Score = 83.8 bits (42), Expect = 2e-014
Identities = 98/114 (85%), Gaps = 2/114 (1%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 314 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 255
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| || |||||| |||||||||||
Sbjct: 254 tcgccaaaa-tgggtacttaccgatgttctgactt-atgccacgagttcggatc 203
>gb|BM329200.1|BM329200 PIC1_34_F09.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 447
Score = 291 bits (147), Expect = 5e-077
Identities = 209/227 (92%), Gaps = 2/227 (0%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 225 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 168
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 167 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 108
Query: 399 agctcggcgaccaagctcggcctgatcttgtagaccggtgggctgcccttgtccttagca 458
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| ||||
Sbjct: 107 agctcagcgaccaagctcggcctcatcttgtaaaccggtgggctgccgctgtcctcagca 48
Query: 459 ccaatgttcacctcttgcccgaagatcttggctttggcctccaccct 505
|| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 47 ccgatgttcacctcttgcccgaagatcttggctttggcttccaccct 1
Score = 91.7 bits (46), Expect = 1e-016
Identities = 98/114 (85%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||| ||| || | |||||
Sbjct: 317 ccacatgatattctgcctgtttctcgccacaattccacacatgggatattttctatcctg 258
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 257 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 205
Score = 89.7 bits (45), Expect = 4e-016
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 402
>gb|BI075165.1|BI075165 IP1_19_B08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 439
Score = 287 bits (145), Expect = 8e-076
Identities = 220/241 (91%), Gaps = 3/241 (1%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||
Sbjct: 239 ttaatgccacgagtt-cggatctggcagttt-acagctatataagcacgctcaatccagc 182
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgtagctgtac 398
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct: 181 ctcctaagcaagtacgcgacttgaacatccttggttagcggcatgattctgtagctgtac 122
Query: 399 agctcggcgaccaagctcggcctgatcttgt-agaccggtgggctgcccttgtccttagc 457
||||| ||||||||||||||||| ||||||| | |||||||||||||| |||||| |||
Sbjct: 121 agctcagcgaccaagctcggcctcatcttgtaaaaccggtgggctgccgctgtcctcagc 62
Query: 458 accaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtgttcgacagc 517
||| |||||||||||||||||||| |||||||||||||| |||||||||||||||| |||
Sbjct: 61 accgatgttcacctcttgcccgaaaatcttggctttggcttccaccctgtgttcgatagc 2
Query: 518 a 518
|
Sbjct: 1 a 1
Score = 99.6 bits (50), Expect = 4e-019
Identities = 99/114 (86%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | |||||
Sbjct: 331 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcctg 272
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 271 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 219
>gb|AI724106.1|AI724106 RHIZ1_6_A11.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 344
Score = 200 bits (101), Expect = 1e-049
Identities = 138/149 (92%), Gaps = 1/149 (0%)
Strand = Plus / Minus
Query: 297 gatctggcagttttacagctacgtaaacacactcaatccagcctcctaagcaagtacgcg 356
||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||
Sbjct: 159 gatctggcagttt-acagctatataagcacgctcaatccagcctcctaagcaagtacgcg 101
Query: 357 acctcaacctccttggttagcggcatgattctgtagctgtacagctcggcgaccaagctc 416
|| | ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 100 acttgaacatccttggttagcggcatgattctgtaactgtacagctcggcgaccaagctc 41
Query: 417 ggcctgatcttgtagaccggtgggctgcc 445
||||| |||||||| ||||||||||||||
Sbjct: 40 ggcctcatcttgtaaaccggtgggctgcc 12
Score = 65.9 bits (33), Expect = 6e-009
Identities = 70/81 (86%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||||||| || | ||||
Sbjct: 267 ccacatgatattctgcctgtttctcgccacaattccacacatggtatattttctatcccg 208
Query: 202 tccccaaaactgggtacttac 222
|| |||||| |||||||||||
Sbjct: 207 tcgccaaaa-tgggtacttac 188
>gb|BG241440.1|BG241440 RHIZ2_49_C01.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 328
Score = 172 bits (87), Expect = 3e-041
Identities = 115/123 (93%), Gaps = 1/123 (0%)
Strand = Plus / Minus
Query: 293 ttcggatctggcagttttacagctacgtaaacacactcaatccagcctcctaagcaagta 352
||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||
Sbjct: 126 ttcggatctggcagttt-acagctatataagcacgctcaatccagcctcctaagcaagta 68
Query: 353 cgcgacctcaacctccttggttagcggcatgattctgtagctgtacagctcggcgaccaa 412
|||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 cgcgacttgaacatccttggttagcggcatgattctgtagctgtacagctcggcgaccaa 8
Query: 413 gct 415
|||
Sbjct: 7 gct 5
Score = 91.7 bits (46), Expect = 1e-016
Identities = 105/122 (86%), Gaps = 2/122 (1%)
Strand = Plus / Minus
Query: 134 cgacaactccacatgatattctgcatgtttattgccacagttccacacatggtataattc 193
||||||| |||||||||||||||| ||||| | |||||| |||||||||||||||| ||
Sbjct: 238 cgacaaccccacatgatattctgcctgtttctcgccacaattccacacatggtatatttt 179
Query: 194 ccatcctctccccaaaactgggtacttactgacgttctggtttaatgccaggagttcgga 253
| ||||| || |||||| ||||||||||| || |||||| || |||||| |||||||||
Sbjct: 178 ctatcctgtcgccaaaa-tgggtacttaccgatgttctgactt-atgccacgagttcgga 121
Query: 254 tc 255
||
Sbjct: 120 tc 119
>gb|CW481168.1|CW481168 fsbb001f240j14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f240j14, DNA
sequence
Length = 631
Score = 131 bits (66), Expect = 1e-028
Identities = 85/92 (92%)
Strand = Plus / Minus
Query: 474 tgcccgaagatcttggctttggcctccaccctgtgttcgacagcacgctccaccgtttnn 533
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 631 tgcccgaagatcttggctttggcttccaccctgtgttcgatagcacgctccaccgtttca 572
Query: 534 tatgtgagaaggttcatgagttgatcacggtc 565
||||||||||||| |||||| |||||| ||||
Sbjct: 571 tatgtgagaaggtgcatgagctgatcagggtc 540
Score = 67.9 bits (34), Expect = 1e-009
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 567 tgggctattatggctggcgtgtaagcttcaggggactcttgaaacttggc 616
|||||||||||||||||| |||||| |||||||| ||| |||||||||||
Sbjct: 398 tgggctattatggctggcatgtaagattcaggggcctcctgaaacttggc 349
>gb|CF431689.1|CF431689 NIT1_10_A05.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_10_A05_A002 3', mRNA sequence
Length = 342
Score = 127 bits (64), Expect = 2e-027
Identities = 102/112 (91%), Gaps = 2/112 (1%)
Strand = Plus / Minus
Query: 279 ttaataccacgagtttcggatctggcagttttacagctacgtaaacacactcaatccagc 338
||||| ||||||||| ||||||||||||||| ||||||| ||||||| |||||||||||
Sbjct: 110 ttaatgccacgagtt-cggatctggcagttt-acagctatataaacacgctcaatccagc 53
Query: 339 ctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattctgt 390
|||||||||||||||||||| | ||| |||||||||| ||||||||||||||
Sbjct: 52 ctcctaagcaagtacgcgacttgaacatccttggttaacggcatgattctgt 1
Score = 91.7 bits (46), Expect = 1e-016
Identities = 98/114 (85%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 142 ccacatgatattctgcatgtttattgccacagttccacacatggtataattcccatcctc 201
|||||||||||||||| ||||| | |||||| |||||||||||| ||| || | |||||
Sbjct: 202 ccacatgatattctgcctgtttctcgccacaattccacacatgggatattttctatcctg 143
Query: 202 tccccaaaactgggtacttactgacgttctggtttaatgccaggagttcggatc 255
|| |||||| ||||||||||| || |||||| ||||||||| |||||||||||
Sbjct: 142 tcgccaaaa-tgggtacttaccgatgttctgacttaatgccacgagttcggatc 90
Score = 73.8 bits (37), Expect = 2e-011
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgagagaatttactccgattcaaaagggcac 89
||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 331 aaatccaacgacaatgaaaaaatttactccgattcaaaagggcac 287
>gb|BG558106.1|BG558106 RHIZ2_66_H04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 438
Score = 125 bits (63), Expect = 7e-027
Identities = 91/99 (91%), Gaps = 1/99 (1%)
Strand = Plus / Minus
Query: 293 ttcggatctggcagttttacagctacgtaaacacactcaatccagcctcctaagcaagta 352
||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||
Sbjct: 98 ttcggatctggcagttt-acagctatataagcacgctcaatccagcctcctaagcaagta 40
Query: 353 cgcgacctcaacctccttggttagcggcatgattctgta 391
|||||| | ||| ||||||||||||||||||||||||||
Sbjct: 39 cgcgacttgaacatccttggttagcggcatgattctgta 1
Score = 91.7 bits (46), Expect = 1e-016
Identities = 105/122 (86%), Gaps = 2/122 (1%)
Strand = Plus / Minus
Query: 134 cgacaactccacatgatattctgcatgtttattgccacagttccacacatggtataattc 193
||||||| |||||||||||||||| ||||| | |||||| |||||||||||||||| ||
Sbjct: 210 cgacaaccccacatgatattctgcctgtttctcgccacaattccacacatggtatatttt 151
Query: 194 ccatcctctccccaaaactgggtacttactgacgttctggtttaatgccaggagttcgga 253
| ||||| || |||||| ||||||||||| || |||||| || |||||| |||||||||
Sbjct: 150 ctatcctgtcgccaaaa-tgggtacttaccgatgttctgactt-atgccacgagttcgga 93
Query: 254 tc 255
||
Sbjct: 92 tc 91
Score = 75.8 bits (38), Expect = 6e-012
Identities = 45/46 (97%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 45 aaatccaacgacaatgaga-gaatttactccgattcaaaagggcac 89
||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 332 aaatccaacgacaatgagaagaatttactccgattcaaaagggcac 287
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 121,068
Number of Sequences: 832831
Number of extensions: 121068
Number of successful extensions: 31762
Number of sequences better than 0.5: 62
Number of HSP's better than 0.5 without gapping: 60
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 31323
Number of HSP's gapped (non-prelim): 330
length of query: 850
length of database: 491,359,669
effective HSP length: 20
effective length of query: 830
effective length of database: 474,703,049
effective search space: 394003530670
effective search space used: 394003530670
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)