BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2494085.2.2
(660 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BZ350671.1|BZ350671 ht59c02.g1 WGS-SbicolorF (JM107 adap... 153 2e-035
gb|CW042188.1|CW042188 104_276_10506979_114_30482 Sorghum m... 153 2e-035
gb|CW260825.1|CW260825 104_727_11229176_116_35196_020 Sorgh... 153 2e-035
gb|BG049431.1|BG049431 OV1_19_H02.g1_A002 Ovary 1 (OV1) Sor... 153 2e-035
gb|BG240262.1|BG240262 OV1_19_H02.b1_A002 Ovary 1 (OV1) Sor... 153 2e-035
gb|CL157218.1|CL157218 104_344_10783391_116_31374_335 Sorgh... 139 4e-031
gb|CW260826.1|CW260826 104_727_11229176_148_35200_020 Sorgh... 139 4e-031
gb|CW487350.1|CW487350 fsbb001f253c16f0 Sorghum methylation... 139 4e-031
gb|BG240504.1|BG240504 OV1_30_G12.b1_A002 Ovary 1 (OV1) Sor... 139 4e-031
gb|CW094137.1|CW094137 104_457_11000151_148_37478_056 Sorgh... 133 2e-029
gb|CW448016.1|CW448016 fsbb001f181g19k0 Sorghum methylation... 133 2e-029
gb|CW490393.1|CW490393 fsbb001f275m22f0 Sorghum methylation... 133 2e-029
gb|CW490394.1|CW490394 fsbb001f275m22k0 Sorghum methylation... 133 2e-029
gb|BM318652.1|BM318652 PI1_16_A12.b9_A002 Pathogen induced ... 133 2e-029
gb|CF074248.1|CF074248 FE1_23_G10.b1_A002 Iron-deficient se... 133 2e-029
gb|CF772495.1|CF772495 DSBF1_35_F07.g1_A010 Drought-stresse... 133 2e-029
gb|CN126256.1|CN126256 RHOH1_16_C08.b1_A002 Acid- and alkal... 133 2e-029
gb|CX609528.1|CX609528 ANR1_13_F02.b1_A002 Anaerobic roots ... 133 2e-029
gb|BE364828.2|BE364828 PI1_16_A12.g1_A002 Pathogen induced ... 131 9e-029
gb|BZ366756.1|BZ366756 ic99b02.b1 WGS-SbicolorF (JM107 adap... 129 4e-028
gb|AW747565.1|AW747565 WS1_73_E04.g1_A002 Water-stressed 1 ... 129 4e-028
gb|CL180693.1|CL180693 104_390_10896198_116_31930_342 Sorgh... 125 6e-027
gb|CN126619.1|CN126619 RHOH1_18_E11.b1_A002 Acid- and alkal... 117 1e-024
gb|BG410838.1|BG410838 EM1_26_E12.g1_A002 Embryo 1 (EM1) So... 109 3e-022
gb|CW092637.1|CW092637 104_455_10999283_114_33047_044 Sorgh... 103 2e-020
gb|CN126708.1|CN126708 RHOH1_18_E11.g1_A002 Acid- and alkal... 101 8e-020
gb|AW678347.1|AW678347 WS1_14_B06.g1_A002 Water-stressed 1 ... 98 1e-018
gb|BZ366757.1|BZ366757 ic99b02.g1 WGS-SbicolorF (JM107 adap... 94 2e-017
gb|BM318305.1|BM318305 PI1_77_A06.g9_A002 Pathogen induced ... 88 1e-015
gb|BE597936.1|BE597936 PI1_67_C08.g1_A002 Pathogen induced ... 80 3e-013
gb|CW308362.1|CW308362 104_796_11468627_116_35732_036 Sorgh... 72 7e-011
gb|CL180694.1|CL180694 104_390_10896198_148_31929_342 Sorgh... 64 2e-008
gb|CW092638.1|CW092638 104_455_10999283_116_33051_044 Sorgh... 56 4e-006
gb|BG557591.1|BG557591 EM1_53_F03.g1_A002 Embryo 1 (EM1) So... 54 2e-005
gb|CF756559.1|CF756559 DSAF1_6_F12.b1_A011 Drought-stressed... 54 2e-005
gb|CF756635.1|CF756635 DSAF1_6_F12.g1_A011 Drought-stressed... 44 0.016
>gb|BZ350671.1|BZ350671 ht59c02.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ht59c02 5', DNA sequence
Length = 551
Score = 153 bits (77), Expect = 2e-035
Identities = 131/149 (87%)
Strand = Plus / Plus
Query: 125 actagcagtccctggtgcagaagcagcggtggcgtaggcccttgcacacgccgccggtga 184
|||||||||||||||| ||||||||||||||||||||||| |||||| |||| ||||| |
Sbjct: 122 actagcagtccctggtacagaagcagcggtggcgtaggcctttgcactcgccaccggtaa 181
Query: 185 aaccttcggtcaggcagacgtttgcgcagttggcgtccctcgagcaaggtcccttgaagc 244
||||||| |||||||| ||| |||||||||| ||||| |||||||| |||||| ||||
Sbjct: 182 aaccttcagtcaggcaaacgcttgcgcagtttgcgtctctcgagcagggtcccctgaatt 241
Query: 245 ggaagctctgcgactcgcacttcctcgcc 273
|| |||| ||||||| ||||||||||||
Sbjct: 242 tgaggctcggcgactcacacttcctcgcc 270
>gb|CW042188.1|CW042188 104_276_10506979_114_30482 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506979, DNA
sequence
Length = 670
Score = 153 bits (77), Expect = 2e-035
Identities = 131/149 (87%)
Strand = Plus / Minus
Query: 125 actagcagtccctggtgcagaagcagcggtggcgtaggcccttgcacacgccgccggtga 184
|||||||||||||||| ||||||||||||||||||||||| |||||| |||| ||||| |
Sbjct: 300 actagcagtccctggtacagaagcagcggtggcgtaggcctttgcactcgccaccggtaa 241
Query: 185 aaccttcggtcaggcagacgtttgcgcagttggcgtccctcgagcaaggtcccttgaagc 244
||||||| |||||||| ||| |||||||||| ||||| |||||||| |||||| ||||
Sbjct: 240 aaccttcagtcaggcaaacgcttgcgcagtttgcgtctctcgagcagggtcccctgaatt 181
Query: 245 ggaagctctgcgactcgcacttcctcgcc 273
|| |||| ||||||| ||||||||||||
Sbjct: 180 tgaggctcggcgactcacacttcctcgcc 152
>gb|CW260825.1|CW260825 104_727_11229176_116_35196_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229176, DNA
sequence
Length = 654
Score = 153 bits (77), Expect = 2e-035
Identities = 131/149 (87%)
Strand = Plus / Minus
Query: 125 actagcagtccctggtgcagaagcagcggtggcgtaggcccttgcacacgccgccggtga 184
|||||||||||||||| ||||||||||||||||||||||| |||||| |||| ||||| |
Sbjct: 415 actagcagtccctggtacagaagcagcggtggcgtaggcctttgcactcgccaccggtaa 356
Query: 185 aaccttcggtcaggcagacgtttgcgcagttggcgtccctcgagcaaggtcccttgaagc 244
||||||| |||||||| ||| |||||||||| ||||| |||||||| |||||| ||||
Sbjct: 355 aaccttcagtcaggcaaacgcttgcgcagtttgcgtctctcgagcagggtcccctgaatt 296
Query: 245 ggaagctctgcgactcgcacttcctcgcc 273
|| |||| ||||||| ||||||||||||
Sbjct: 295 tgaggctcggcgactcacacttcctcgcc 267
>gb|BG049431.1|BG049431 OV1_19_H02.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 344
Score = 153 bits (77), Expect = 2e-035
Identities = 131/149 (87%)
Strand = Plus / Minus
Query: 125 actagcagtccctggtgcagaagcagcggtggcgtaggcccttgcacacgccgccggtga 184
|||||||||||||||| ||||||||||||||||||||||| |||||| |||| ||||| |
Sbjct: 269 actagcagtccctggtacagaagcagcggtggcgtaggcctttgcactcgccaccggtaa 210
Query: 185 aaccttcggtcaggcagacgtttgcgcagttggcgtccctcgagcaaggtcccttgaagc 244
||||||| |||||||| ||| |||||||||| ||||| |||||||| |||||| ||||
Sbjct: 209 aaccttcagtcaggcaaacgcttgcgcagtttgcgtctctcgagcagggtcccctgaatt 150
Query: 245 ggaagctctgcgactcgcacttcctcgcc 273
|| |||| ||||||| ||||||||||||
Sbjct: 149 tgaggctcggcgactcacacttcctcgcc 121
>gb|BG240262.1|BG240262 OV1_19_H02.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 284
Score = 153 bits (77), Expect = 2e-035
Identities = 131/149 (87%)
Strand = Plus / Minus
Query: 125 actagcagtccctggtgcagaagcagcggtggcgtaggcccttgcacacgccgccggtga 184
|||||||||||||||| ||||||||||||||||||||||| |||||| |||| ||||| |
Sbjct: 269 actagcagtccctggtacagaagcagcggtggcgtaggcctttgcactcgccaccggtaa 210
Query: 185 aaccttcggtcaggcagacgtttgcgcagttggcgtccctcgagcaaggtcccttgaagc 244
||||||| |||||||| ||| |||||||||| ||||| |||||||| |||||| ||||
Sbjct: 209 aaccttcagtcaggcaaacgcttgcgcagtttgcgtctctcgagcagggtcccctgaatt 150
Query: 245 ggaagctctgcgactcgcacttcctcgcc 273
|| |||| ||||||| ||||||||||||
Sbjct: 149 tgaggctcggcgactcacacttcctcgcc 121
>gb|CL157218.1|CL157218 104_344_10783391_116_31374_335 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10783391, DNA
sequence
Length = 726
Score = 139 bits (70), Expect = 4e-031
Identities = 142/166 (85%)
Strand = Plus / Plus
Query: 125 actagcagtccctggtgcagaagcagcggtggcgtaggcccttgcacacgccgccggtga 184
||||||||||| |||| ||||||||||||||||||||||| |||||| ||| ||||| |
Sbjct: 107 actagcagtccttggtacagaagcagcggtggcgtaggcctttgcacttgccaccggtaa 166
Query: 185 aaccttcggtcaggcagacgtttgcgcagttggcgtccctcgagcaaggtcccttgaagc 244
||||||| ||| |||| ||| |||||||||| ||||| || ||||| ||||||| |||||
Sbjct: 167 aaccttcagtccggcaaacggttgcgcagtttgcgtctctggagcagggtccctggaagc 226
Query: 245 ggaagctctgcgactcgcacttcctcgccgacaccatagtcaccgg 290
|| |||| ||||||| |||||||||||| |||||||||||||
Sbjct: 227 ggtggctcggcgactcacacttcctcgccagtgccatagtcaccgg 272
>gb|CW260826.1|CW260826 104_727_11229176_148_35200_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229176, DNA
sequence
Length = 548
Score = 139 bits (70), Expect = 4e-031
Identities = 106/118 (89%)
Strand = Plus / Plus
Query: 125 actagcagtccctggtgcagaagcagcggtggcgtaggcccttgcacacgccgccggtga 184
|||||||||||||||| ||||||||||||||||||||||| |||||| |||| ||||| |
Sbjct: 414 actagcagtccctggtacagaagcagcggtggcgtaggcctttgcactcgccaccggtaa 473
Query: 185 aaccttcggtcaggcagacgtttgcgcagttggcgtccctcgagcaaggtcccttgaa 242
||||||| |||||||| ||| |||||||||| ||||| |||||||| |||||| ||||
Sbjct: 474 aaccttcagtcaggcaaacgcttgcgcagtttgcgtctctcgagcagggtcccctgaa 531
>gb|CW487350.1|CW487350 fsbb001f253c16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f253c16, DNA
sequence
Length = 813
Score = 139 bits (70), Expect = 4e-031
Identities = 142/166 (85%)
Strand = Plus / Minus
Query: 125 actagcagtccctggtgcagaagcagcggtggcgtaggcccttgcacacgccgccggtga 184
||||||||||| |||| ||||||||||||||||||||||| |||||| ||| ||||| |
Sbjct: 331 actagcagtccttggtacagaagcagcggtggcgtaggcctttgcacttgccaccggtaa 272
Query: 185 aaccttcggtcaggcagacgtttgcgcagttggcgtccctcgagcaaggtcccttgaagc 244
||||||| ||| |||| ||| |||||||||| ||||| || ||||| ||||||| |||||
Sbjct: 271 aaccttcagtccggcaaacggttgcgcagtttgcgtctctggagcagggtccctggaagc 212
Query: 245 ggaagctctgcgactcgcacttcctcgccgacaccatagtcaccgg 290
|| |||| ||||||| |||||||||||| |||||||||||||
Sbjct: 211 ggtggctcggcgactcacacttcctcgccagtgccatagtcaccgg 166
>gb|BG240504.1|BG240504 OV1_30_G12.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 429
Score = 139 bits (70), Expect = 4e-031
Identities = 142/166 (85%)
Strand = Plus / Minus
Query: 125 actagcagtccctggtgcagaagcagcggtggcgtaggcccttgcacacgccgccggtga 184
||||||||||| |||| ||||||||||||||||||||||| |||||| ||| ||||| |
Sbjct: 280 actagcagtccttggtacagaagcagcggtggcgtaggcctttgcacttgccaccggtaa 221
Query: 185 aaccttcggtcaggcagacgtttgcgcagttggcgtccctcgagcaaggtcccttgaagc 244
||||||| ||| |||| ||| |||||||||| ||||| || ||||| ||||||| |||||
Sbjct: 220 aaccttcagtccggcaaacggttgcgcagtttgcgtctctggagcagggtccctggaagc 161
Query: 245 ggaagctctgcgactcgcacttcctcgccgacaccatagtcaccgg 290
|| |||| ||||||| |||||||||||| |||||||||||||
Sbjct: 160 ggtggctcggcgactcacacttcctcgccagtgccatagtcaccgg 115
>gb|CW094137.1|CW094137 104_457_11000151_148_37478_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11000151, DNA
sequence
Length = 688
Score = 133 bits (67), Expect = 2e-029
Identities = 139/159 (87%), Gaps = 3/159 (1%)
Strand = Plus / Minus
Query: 497 agcagccccagctccgtcactgattatgcaaatggagccttccagg-attccaacttcac 555
|||||| |||| | |||||||||||| |||||||||||| | || || |||||||
Sbjct: 525 agcagctccagtttcgtcactgattaaaaaaatggagcctttctgggataccaactttct 466
Query: 556 tcgctttacttgcataatcttgtaatttagggctgcatatgtacatgcaatttaacttgc 615
| ||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 465 ttgctttacttgcctaatcttgtaatttacggctgcatatgtacatgcaaatt-acttgc 407
Query: 616 tgcttgtttgaagcggaaaatcagatttcgtttggtgta 654
|||||||||||||| |||||||||||||| |||||||||
Sbjct: 406 tgcttgtttgaagc-gaaaatcagatttcatttggtgta 369
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 336 gatcgtcgcccaccaaagtagtagccatgcc 366
|||||||||||||||||||||||||| ||||
Sbjct: 640 gatcgtcgcccaccaaagtagtagccgtgcc 610
Score = 42.1 bits (21), Expect = 0.064
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Minus
Query: 382 atcatctatgctcaaggttgagagctgaa 410
|||||||||||||| ||||||||||||||
Sbjct: 604 atcatctatgctca-ggttgagagctgaa 577
>gb|CW448016.1|CW448016 fsbb001f181g19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f181g19, DNA
sequence
Length = 566
Score = 133 bits (67), Expect = 2e-029
Identities = 139/159 (87%), Gaps = 3/159 (1%)
Strand = Plus / Minus
Query: 497 agcagccccagctccgtcactgattatgcaaatggagccttccagg-attccaacttcac 555
|||||| |||| | |||||||||||| |||||||||||| | || || |||||||
Sbjct: 402 agcagctccagtttcgtcactgattaaaaaaatggagcctttctgggataccaactttct 343
Query: 556 tcgctttacttgcataatcttgtaatttagggctgcatatgtacatgcaatttaacttgc 615
| ||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 342 ttgctttacttgcctaatcttgtaatttacggctgcatatgtacatgcaaatt-acttgc 284
Query: 616 tgcttgtttgaagcggaaaatcagatttcgtttggtgta 654
|||||||||||||| |||||||||||||| |||||||||
Sbjct: 283 tgcttgtttgaagc-gaaaatcagatttcatttggtgta 246
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 336 gatcgtcgcccaccaaagtagtagccatgcc 366
|||||||||||||||||||||||||| ||||
Sbjct: 518 gatcgtcgcccaccaaagtagtagccgtgcc 488
Score = 42.1 bits (21), Expect = 0.064
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 382 atcatctatgctcaaggttgagagc 406
|||||||||||||| ||||||||||
Sbjct: 482 atcatctatgctcagggttgagagc 458
>gb|CW490393.1|CW490393 fsbb001f275m22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f275m22, DNA
sequence
Length = 670
Score = 133 bits (67), Expect = 2e-029
Identities = 139/159 (87%), Gaps = 3/159 (1%)
Strand = Plus / Minus
Query: 497 agcagccccagctccgtcactgattatgcaaatggagccttccagg-attccaacttcac 555
|||||| |||| | |||||||||||| |||||||||||| | || || |||||||
Sbjct: 655 agcagctccagtttcgtcactgattaaaaaaatggagcctttctgggataccaactttct 596
Query: 556 tcgctttacttgcataatcttgtaatttagggctgcatatgtacatgcaatttaacttgc 615
| ||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 595 ttgctttacttgcctaatcttgtaatttacggctgcatatgtacatgcaaatt-acttgc 537
Query: 616 tgcttgtttgaagcggaaaatcagatttcgtttggtgta 654
|||||||||||||| |||||||||||||| |||||||||
Sbjct: 536 tgcttgtttgaagc-gaaaatcagatttcatttggtgta 499
>gb|CW490394.1|CW490394 fsbb001f275m22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f275m22, DNA
sequence
Length = 738
Score = 133 bits (67), Expect = 2e-029
Identities = 139/159 (87%), Gaps = 3/159 (1%)
Strand = Plus / Plus
Query: 497 agcagccccagctccgtcactgattatgcaaatggagccttccagg-attccaacttcac 555
|||||| |||| | |||||||||||| |||||||||||| | || || |||||||
Sbjct: 493 agcagctccagtttcgtcactgattaaaaaaatggagcctttctgggataccaactttct 552
Query: 556 tcgctttacttgcataatcttgtaatttagggctgcatatgtacatgcaatttaacttgc 615
| ||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 553 ttgctttacttgcctaatcttgtaatttacggctgcatatgtacatgcaaatt-acttgc 611
Query: 616 tgcttgtttgaagcggaaaatcagatttcgtttggtgta 654
|||||||||||||| |||||||||||||| |||||||||
Sbjct: 612 tgcttgtttgaagc-gaaaatcagatttcatttggtgta 649
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 336 gatcgtcgcccaccaaagtagtagccatgcc 366
|||||||||||||||||||||||||| ||||
Sbjct: 378 gatcgtcgcccaccaaagtagtagccgtgcc 408
Score = 42.1 bits (21), Expect = 0.064
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 382 atcatctatgctcaaggttgagagctgaa 410
|||||||||||||| ||||||||||||||
Sbjct: 414 atcatctatgctca-ggttgagagctgaa 441
>gb|BM318652.1|BM318652 PI1_16_A12.b9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 441
Score = 133 bits (67), Expect = 2e-029
Identities = 139/159 (87%), Gaps = 3/159 (1%)
Strand = Plus / Plus
Query: 497 agcagccccagctccgtcactgattatgcaaatggagccttccagg-attccaacttcac 555
|||||| |||| | |||||||||||| |||||||||||| | || || |||||||
Sbjct: 265 agcagctccagtttcgtcactgattaaaaaaatggagcctttctgggataccaactttct 324
Query: 556 tcgctttacttgcataatcttgtaatttagggctgcatatgtacatgcaatttaacttgc 615
| ||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 325 ttgctttacttgcctaatcttgtaatttacggctgcatatgtacatgcaaatt-acttgc 383
Query: 616 tgcttgtttgaagcggaaaatcagatttcgtttggtgta 654
|||||||||||||| |||||||||||||| |||||||||
Sbjct: 384 tgcttgtttgaagc-gaaaatcagatttcatttggtgta 421
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 336 gatcgtcgcccaccaaagtagtagccatgcc 366
|||||||||||||||||||||||||| ||||
Sbjct: 150 gatcgtcgcccaccaaagtagtagccgtgcc 180
Score = 42.1 bits (21), Expect = 0.064
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 382 atcatctatgctcaaggttgagagctgaa 410
|||||||||||||| ||||||||||||||
Sbjct: 186 atcatctatgctca-ggttgagagctgaa 213
>gb|CF074248.1|CF074248 FE1_23_G10.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_23_G10_A002 3', mRNA sequence
Length = 631
Score = 133 bits (67), Expect = 2e-029
Identities = 139/159 (87%), Gaps = 3/159 (1%)
Strand = Plus / Plus
Query: 497 agcagccccagctccgtcactgattatgcaaatggagccttccagg-attccaacttcac 555
|||||| |||| | |||||||||||| |||||||||||| | || || |||||||
Sbjct: 419 agcagctccagtttcgtcactgattaaaaaaatggagcctttctgggataccaactttct 478
Query: 556 tcgctttacttgcataatcttgtaatttagggctgcatatgtacatgcaatttaacttgc 615
| ||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 479 ttgctttacttgcctaatcttgtaatttacggctgcatatgtacatgcaaatt-acttgc 537
Query: 616 tgcttgtttgaagcggaaaatcagatttcgtttggtgta 654
|||||||||||||| |||||||||||||| |||||||||
Sbjct: 538 tgcttgtttgaagc-gaaaatcagatttcatttggtgta 575
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 336 gatcgtcgcccaccaaagtagtagccatgcc 366
|||||||||||||||||||||||||| ||||
Sbjct: 304 gatcgtcgcccaccaaagtagtagccgtgcc 334
Score = 42.1 bits (21), Expect = 0.064
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 382 atcatctatgctcaaggttgagagctgaa 410
|||||||||||||| ||||||||||||||
Sbjct: 340 atcatctatgctca-ggttgagagctgaa 367
>gb|CF772495.1|CF772495 DSBF1_35_F07.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_35_F07_A010 3', mRNA sequence
Length = 463
Score = 133 bits (67), Expect = 2e-029
Identities = 139/159 (87%), Gaps = 3/159 (1%)
Strand = Plus / Plus
Query: 497 agcagccccagctccgtcactgattatgcaaatggagccttccagg-attccaacttcac 555
|||||| |||| | |||||||||||| |||||||||||| | || || |||||||
Sbjct: 272 agcagctccagtttcgtcactgattaaaaaaatggagcctttctgggataccaactttct 331
Query: 556 tcgctttacttgcataatcttgtaatttagggctgcatatgtacatgcaatttaacttgc 615
| ||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 332 ttgctttacttgcctaatcttgtaatttacggctgcatatgtacatgcaaatt-acttgc 390
Query: 616 tgcttgtttgaagcggaaaatcagatttcgtttggtgta 654
|||||||||||||| |||||||||||||| |||||||||
Sbjct: 391 tgcttgtttgaagc-gaaaatcagatttcatttggtgta 428
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 336 gatcgtcgcccaccaaagtagtagccatgcc 366
|||||||||||||||||||||||||| ||||
Sbjct: 157 gatcgtcgcccaccaaagtagtagccgtgcc 187
Score = 42.1 bits (21), Expect = 0.064
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 382 atcatctatgctcaaggttgagagctgaa 410
|||||||||||||| ||||||||||||||
Sbjct: 193 atcatctatgctca-ggttgagagctgaa 220
>gb|CN126256.1|CN126256 RHOH1_16_C08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_16_C08_A002 3', mRNA sequence
Length = 655
Score = 133 bits (67), Expect = 2e-029
Identities = 139/159 (87%), Gaps = 3/159 (1%)
Strand = Plus / Plus
Query: 497 agcagccccagctccgtcactgattatgcaaatggagccttccagg-attccaacttcac 555
|||||| |||| | |||||||||||| |||||||||||| | || || |||||||
Sbjct: 419 agcagctccagtttcgtcactgattaaaaaaatggagcctttctgggataccaactttct 478
Query: 556 tcgctttacttgcataatcttgtaatttagggctgcatatgtacatgcaatttaacttgc 615
| ||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 479 ttgctttacttgcctaatcttgtaatttacggctgcatatgtacatgcaaatt-acttgc 537
Query: 616 tgcttgtttgaagcggaaaatcagatttcgtttggtgta 654
|||||||||||||| |||||||||||||| |||||||||
Sbjct: 538 tgcttgtttgaagc-gaaaatcagatttcatttggtgta 575
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 340 gtcgcccaccaaagtagtagccatgcc 366
|||||||||||||||||||||| ||||
Sbjct: 308 gtcgcccaccaaagtagtagccgtgcc 334
Score = 42.1 bits (21), Expect = 0.064
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 382 atcatctatgctcaaggttgagagctgaa 410
|||||||||||||| ||||||||||||||
Sbjct: 340 atcatctatgctca-ggttgagagctgaa 367
>gb|CX609528.1|CX609528 ANR1_13_F02.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_13_F02_A002 3', mRNA sequence
Length = 787
Score = 133 bits (67), Expect = 2e-029
Identities = 139/159 (87%), Gaps = 3/159 (1%)
Strand = Plus / Plus
Query: 497 agcagccccagctccgtcactgattatgcaaatggagccttccagg-attccaacttcac 555
|||||| |||| | |||||||||||| |||||||||||| | || || |||||||
Sbjct: 565 agcagctccagtttcgtcactgattaaaaaaatggagcctttctgggataccaactttct 624
Query: 556 tcgctttacttgcataatcttgtaatttagggctgcatatgtacatgcaatttaacttgc 615
| ||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 625 ttgctttacttgcctaatcttgtaatttacggctgcatatgtacatgcaaatt-acttgc 683
Query: 616 tgcttgtttgaagcggaaaatcagatttcgtttggtgta 654
|||||||||||||| |||||||||||||| |||||||||
Sbjct: 684 tgcttgtttgaagc-gaaaatcagatttcatttggtgta 721
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 336 gatcgtcgcccaccaaagtagtagccatgcc 366
|||||||||||||||||||||||||| ||||
Sbjct: 450 gatcgtcgcccaccaaagtagtagccgtgcc 480
Score = 42.1 bits (21), Expect = 0.064
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 382 atcatctatgctcaaggttgagagctgaa 410
|||||||||||||| ||||||||||||||
Sbjct: 486 atcatctatgctca-ggttgagagctgaa 513
>gb|BE364828.2|BE364828 PI1_16_A12.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 420
Score = 131 bits (66), Expect = 9e-029
Identities = 138/158 (87%), Gaps = 3/158 (1%)
Strand = Plus / Plus
Query: 497 agcagccccagctccgtcactgattatgcaaatggagccttccagg-attccaacttcac 555
|||||| |||| | |||||||||||| |||||||||||| | || || |||||||
Sbjct: 265 agcagctccagtttcgtcactgattaaaaaaatggagcctttctgggataccaactttct 324
Query: 556 tcgctttacttgcataatcttgtaatttagggctgcatatgtacatgcaatttaacttgc 615
| ||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 325 ttgctttacttgcctaatcttgtaatttacggctgcatatgtacatgcaaatt-acttgc 383
Query: 616 tgcttgtttgaagcggaaaatcagatttcgtttggtgt 653
|||||||||||||| |||||||||||||| ||||||||
Sbjct: 384 tgcttgtttgaagc-gaaaatcagatttcatttggtgt 420
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 336 gatcgtcgcccaccaaagtagtagccatgcc 366
|||||||||||||||||||||||||| ||||
Sbjct: 150 gatcgtcgcccaccaaagtagtagccgtgcc 180
Score = 42.1 bits (21), Expect = 0.064
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 382 atcatctatgctcaaggttgagagctgaa 410
|||||||||||||| ||||||||||||||
Sbjct: 186 atcatctatgctca-ggttgagagctgaa 213
>gb|BZ366756.1|BZ366756 ic99b02.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic99b02 5', DNA sequence
Length = 448
Score = 129 bits (65), Expect = 4e-028
Identities = 91/97 (93%), Gaps = 2/97 (2%)
Strand = Plus / Minus
Query: 558 gctttacttgcataatcttgtaatttagggctgcatatgtacatgcaatttaacttgctg 617
||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct: 146 gctttacttgcctaatcttgtaatttacggctgcatatgtacatgcaaatt-acttgctg 88
Query: 618 cttgtttgaagcggaaaatcagatttcgtttggtgta 654
|||||||||||| |||||||||||||| |||||||||
Sbjct: 87 cttgtttgaagc-gaaaatcagatttcatttggtgta 52
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 336 gatcgtcgcccaccaaagtagtagccatgcc 366
|||||||||||||||||||||||||| ||||
Sbjct: 323 gatcgtcgcccaccaaagtagtagccgtgcc 293
Score = 42.1 bits (21), Expect = 0.064
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Minus
Query: 382 atcatctatgctcaaggttgagagctgaa 410
|||||||||||||| ||||||||||||||
Sbjct: 287 atcatctatgctca-ggttgagagctgaa 260
>gb|AW747565.1|AW747565 WS1_73_E04.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 491
Score = 129 bits (65), Expect = 4e-028
Identities = 91/97 (93%), Gaps = 2/97 (2%)
Strand = Plus / Plus
Query: 558 gctttacttgcataatcttgtaatttagggctgcatatgtacatgcaatttaacttgctg 617
||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct: 330 gctttacttgcctaatcttgtaatttacggctgcatatgtacatgcaaatt-acttgctg 388
Query: 618 cttgtttgaagcggaaaatcagatttcgtttggtgta 654
|||||||||||| |||||||||||||| |||||||||
Sbjct: 389 cttgtttgaagc-gaaaatcagatttcatttggtgta 424
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 336 gatcgtcgcccaccaaagtagta 358
|||||||||||||||||||||||
Sbjct: 153 gatcgtcgcccaccaaagtagta 175
Score = 42.1 bits (21), Expect = 0.064
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 382 atcatctatgctcaaggttgagagctgaa 410
|||||||||||||| ||||||||||||||
Sbjct: 189 atcatctatgctca-ggttgagagctgaa 216
>gb|CL180693.1|CL180693 104_390_10896198_116_31930_342 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896198, DNA
sequence
Length = 484
Score = 125 bits (63), Expect = 6e-027
Identities = 126/147 (85%)
Strand = Plus / Minus
Query: 127 tagcagtccctggtgcagaagcagcggtggcgtaggcccttgcacacgccgccggtgaaa 186
|||||||||||||| |||||||||||| |||||||||| ||||| ||| | ||| |||
Sbjct: 457 tagcagtccctggtacagaagcagcggcggcgtaggcctctgcacttgccactggtaaaa 398
Query: 187 ccttcggtcaggcagacgtttgcgcagttggcgtccctcgagcaaggtcccttgaagcgg 246
||||| |||||||| ||| |||| ||||| ||||||||||||| ||||||||||| |
Sbjct: 397 ccttctgtcaggcaaacggttgcacagttttcgtccctcgagcagggtcccttgaatttg 338
Query: 247 aagctctgcgactcgcacttcctcgcc 273
||||||| ||||| |||||||||||||
Sbjct: 337 aagctcttcgactggcacttcctcgcc 311
>gb|CN126619.1|CN126619 RHOH1_18_E11.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_18_E11_A002 3', mRNA sequence
Length = 717
Score = 117 bits (59), Expect = 1e-024
Identities = 138/159 (86%), Gaps = 4/159 (2%)
Strand = Plus / Plus
Query: 497 agcagccccagctccgtcactgattatgcaaatggagccttccagg-attccaacttcac 555
|||||| |||| | |||||||||||| |||||||||||| | || || |||||||
Sbjct: 560 agcagctccagtttcgtcactgattaaaaaaatggagcctttctgggataccaactttct 619
Query: 556 tcgctttacttgcataatcttgtaatttagggctgcatatgtacatgcaatttaacttgc 615
| ||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 620 ttgctttacttgcctaatcttgtaatttacggctgcatatgtacatgcaaatt-acttgc 678
Query: 616 tgcttgtttgaagcggaaaatcagatttcgtttggtgta 654
|||||| ||||||| |||||||||||||| |||||||||
Sbjct: 679 tgcttg-ttgaagc-gaaaatcagatttcatttggtgta 715
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 336 gatcgtcgcccaccaaagtagtagccatgcc 366
|||||||||||||||||||||||||| ||||
Sbjct: 445 gatcgtcgcccaccaaagtagtagccgtgcc 475
Score = 42.1 bits (21), Expect = 0.064
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 382 atcatctatgctcaaggttgagagctgaa 410
|||||||||||||| ||||||||||||||
Sbjct: 481 atcatctatgctca-ggttgagagctgaa 508
>gb|BG410838.1|BG410838 EM1_26_E12.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 698
Score = 109 bits (55), Expect = 3e-022
Identities = 117/135 (86%), Gaps = 2/135 (1%)
Strand = Plus / Plus
Query: 497 agcagccccagctccgtcactgattatgcaaatggagccttccagg-attccaacttcac 555
|||||| |||| | |||||||||||| |||||||||||| | || || |||||||
Sbjct: 561 agcagctccagtttcgtcactgattaaaaaaatggagcctttctgggataccaactttct 620
Query: 556 tcgctttacttgcataatcttgtaatttagggctgcatatgtacatgcaatttaacttgc 615
| ||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 621 ttgctttacttgcctaatcttgtaatttacggctgcatatgtacatgcaaatt-acttgc 679
Query: 616 tgcttgtttgaagcg 630
|||||||||||||||
Sbjct: 680 tgcttgtttgaagcg 694
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 336 gatcgtcgcccaccaaagtagtagccatgcc 366
|||||||||||||||||||||||||| ||||
Sbjct: 446 gatcgtcgcccaccaaagtagtagccgtgcc 476
Score = 42.1 bits (21), Expect = 0.064
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 382 atcatctatgctcaaggttgagagctgaa 410
|||||||||||||| ||||||||||||||
Sbjct: 482 atcatctatgctca-ggttgagagctgaa 509
>gb|CW092637.1|CW092637 104_455_10999283_114_33047_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10999283, DNA
sequence
Length = 700
Score = 103 bits (52), Expect = 2e-020
Identities = 112/132 (84%)
Strand = Plus / Minus
Query: 142 cagaagcagcggtggcgtaggcccttgcacacgccgccggtgaaaccttcggtcaggcag 201
|||||||||||| |||||||||| ||||| ||| | ||| |||||||| ||||||||
Sbjct: 698 cagaagcagcggcggcgtaggcctctgcacttgccactggtaaaaccttctgtcaggcaa 639
Query: 202 acgtttgcgcagttggcgtccctcgagcaaggtcccttgaagcggaagctctgcgactcg 261
||| |||| ||||| ||||||||||||| ||||||||||| |||||||| ||||| |
Sbjct: 638 acggttgcacagttttcgtccctcgagcagggtcccttgaatttgaagctcttcgactgg 579
Query: 262 cacttcctcgcc 273
||||||||||||
Sbjct: 578 cacttcctcgcc 567
>gb|CN126708.1|CN126708 RHOH1_18_E11.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_18_E11_A002 5', mRNA sequence
Length = 858
Score = 101 bits (51), Expect = 8e-020
Identities = 113/131 (86%), Gaps = 2/131 (1%)
Strand = Plus / Plus
Query: 497 agcagccccagctccgtcactgattatgcaaatggagccttccagg-attccaacttcac 555
|||||| |||| | |||||||||||| |||||||||||| | || || |||||||
Sbjct: 729 agcagctccagtttcgtcactgattaaaaaaatggagcctttctgggataccaactttct 788
Query: 556 tcgctttacttgcataatcttgtaatttagggctgcatatgtacatgcaatttaacttgc 615
| ||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 789 ttgctttacttgcctaatcttgtaatttacggctgcatatgtacatgcaaatt-acttgc 847
Query: 616 tgcttgtttga 626
|||||||||||
Sbjct: 848 tgcttgtttga 858
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 336 gatcgtcgcccaccaaagtagtagccatgcc 366
|||||||||||||||||||||||||| ||||
Sbjct: 614 gatcgtcgcccaccaaagtagtagccgtgcc 644
Score = 42.1 bits (21), Expect = 0.064
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 382 atcatctatgctcaaggttgagagctgaa 410
|||||||||||||| ||||||||||||||
Sbjct: 650 atcatctatgctca-ggttgagagctgaa 677
>gb|AW678347.1|AW678347 WS1_14_B06.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 566
Score = 97.6 bits (49), Expect = 1e-018
Identities = 68/73 (93%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 558 gctttacttgcataatcttgtaatttagggctgcatatgtacatgcaatttaacttgctg 617
||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct: 495 gctttacttgcctaatcttgtaatttacggctgcatatgtacatgcaaatt-acttgctg 553
Query: 618 cttgtttgaagcg 630
||||||||||||
Sbjct: 554 gttgtttgaagcg 566
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 336 gatcgtcgcccaccaaagtagtagccatgcc 366
|||||||||||||||||||||||||| ||||
Sbjct: 318 gatcgtcgcccaccaaagtagtagccgtgcc 348
Score = 42.1 bits (21), Expect = 0.064
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 382 atcatctatgctcaaggttgagagctgaa 410
|||||||||||||| ||||||||||||||
Sbjct: 354 atcatctatgctca-ggttgagagctgaa 381
>gb|BZ366757.1|BZ366757 ic99b02.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic99b02 5', DNA sequence
Length = 514
Score = 93.7 bits (47), Expect = 2e-017
Identities = 112/131 (85%), Gaps = 2/131 (1%)
Strand = Plus / Plus
Query: 497 agcagccccagctccgtcactgattatgcaaatggagccttccagg-attccaacttcac 555
|||||| |||| | |||||||||||| |||||||||||| | || || |||||||
Sbjct: 385 agcagctccagtttcgtcactgattaaaaaaatggagcctttctgggataccaactttct 444
Query: 556 tcgctttacttgcataatcttgtaatttagggctgcatatgtacatgcaatttaacttgc 615
| ||||||||||| ||||||||||||||| ||||||||||||||||||| || ||||||
Sbjct: 445 ttgctttacttgcctaatcttgtaatttaccgctgcatatgtacatgcaaatt-acttgc 503
Query: 616 tgcttgtttga 626
|||||||||||
Sbjct: 504 tgcttgtttga 514
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 336 gatcgtcgcccaccaaagtagtagccatgcc 366
|||||||||||||||||||||||||| ||||
Sbjct: 270 gatcgtcgcccaccaaagtagtagccgtgcc 300
Score = 42.1 bits (21), Expect = 0.064
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 382 atcatctatgctcaaggttgagagctgaa 410
|||||||||||||| ||||||||||||||
Sbjct: 306 atcatctatgctca-ggttgagagctgaa 333
>gb|BM318305.1|BM318305 PI1_77_A06.g9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 560
Score = 87.7 bits (44), Expect = 1e-015
Identities = 116/136 (85%), Gaps = 3/136 (2%)
Strand = Plus / Plus
Query: 497 agcagccccagctccgtcactgattatgcaaatggagccttccagg-attccaacttcac 555
|||||| |||| | |||||||||||| |||||||||||| | || || |||||||
Sbjct: 422 agcagctccagtttcgtcactgattaaaaaaatggagcctttctgggataccaactttct 481
Query: 556 tcgctttacttgcataatcttgtaatttagggctgca-tatgtacatgcaatttaacttg 614
| ||||||||||| ||||||||||||||| ||||||| ||||||||||||| || |||||
Sbjct: 482 ttgctttacttgcctaatcttgtaatttacggctgcactatgtacatgcaaatt-acttg 540
Query: 615 ctgcttgtttgaagcg 630
||| ||||||||||||
Sbjct: 541 ctggttgtttgaagcg 556
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 336 gatcgtcgcccaccaaagtagtagccatgcc 366
|||||||||||||||||||||||||| ||||
Sbjct: 307 gatcgtcgcccaccaaagtagtagccgtgcc 337
Score = 42.1 bits (21), Expect = 0.064
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 382 atcatctatgctcaaggttgagagctgaa 410
|||||||||||||| ||||||||||||||
Sbjct: 343 atcatctatgctca-ggttgagagctgaa 370
>gb|BE597936.1|BE597936 PI1_67_C08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 645
Score = 79.8 bits (40), Expect = 3e-013
Identities = 116/136 (85%), Gaps = 4/136 (2%)
Strand = Plus / Plus
Query: 497 agcagccccagctccgtcactgattatgcaaatggagccttccagg-attccaacttcac 555
|||||| |||| | |||||||||||| |||||||||||| | || || |||||||
Sbjct: 508 agcagctccagtttcgtcactgattaaaaaaatggagcctttctgggataccaactttct 567
Query: 556 tcgctttacttgcataatcttgtaatttagggc-tgcatatgtacatgcaatttaacttg 614
| ||||||||||| ||||||||||||||| ||| ||||||||||||||||| || |||||
Sbjct: 568 ttgctttacttgcctaatcttgtaatttacggcgtgcatatgtacatgcaaatt-acttg 626
Query: 615 ctgcttgtttgaagcg 630
|||| |||||||||||
Sbjct: 627 ctgc-tgtttgaagcg 641
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 336 gatcgtcgcccaccaaagtagtagccatgcc 366
|||||||||||||||||||||||||| ||||
Sbjct: 393 gatcgtcgcccaccaaagtagtagccgtgcc 423
Score = 42.1 bits (21), Expect = 0.064
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 382 atcatctatgctcaaggttgagagctgaa 410
|||||||||||||| ||||||||||||||
Sbjct: 429 atcatctatgctca-ggttgagagctgaa 456
>gb|CW308362.1|CW308362 104_796_11468627_116_35732_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468627, DNA
sequence
Length = 747
Score = 71.9 bits (36), Expect = 7e-011
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 125 actagcagtccctggtgcagaagcagcggtggcgtaggcccttgcacacgccgccggtga 184
|||||||||||||||| |||||||||||| |||||||||| ||||| ||| | ||| |
Sbjct: 79 actagcagtccctggtacagaagcagcggcggcgtaggcctctgcacttgccactggtaa 20
Query: 185 aaccttcggtcaggca 200
||||||| ||||||||
Sbjct: 19 aaccttctgtcaggca 4
>gb|CL180694.1|CL180694 104_390_10896198_148_31929_342 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896198, DNA
sequence
Length = 676
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 125 actagcagtccctggtgcagaagcagcggtggcgtaggcc 164
|||||||||||||||| |||||||||||| ||||||||||
Sbjct: 616 actagcagtccctggtacagaagcagcggcggcgtaggcc 655
>gb|CW092638.1|CW092638 104_455_10999283_116_33051_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10999283, DNA
sequence
Length = 589
Score = 56.0 bits (28), Expect = 4e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 125 actagcagtccctggtgcagaagcagcggtggcgta 160
|||||||||||||||| |||||||||||| ||||||
Sbjct: 519 actagcagtccctggtacagaagcagcggcggcgta 554
>gb|BG557591.1|BG557591 EM1_53_F03.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 187
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 336 gatcgtcgcccaccaaagtagtagccatgcc 366
|||||||||||||||||||||||||| ||||
Sbjct: 128 gatcgtcgcccaccaaagtagtagccgtgcc 158
>gb|CF756559.1|CF756559 DSAF1_6_F12.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_6_F12_A011 5', mRNA sequence
Length = 596
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 336 gatcgtcgcccaccaaagtagtagccatgcc 366
|||||||||||||||||||||||||| ||||
Sbjct: 458 gatcgtcgcccaccaaagtagtagccgtgcc 488
Score = 42.1 bits (21), Expect = 0.064
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 382 atcatctatgctcaaggttgagagctgaa 410
|||||||||||||| ||||||||||||||
Sbjct: 494 atcatctatgctca-ggttgagagctgaa 521
>gb|CF756635.1|CF756635 DSAF1_6_F12.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_6_F12_A011 3', mRNA sequence
Length = 320
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 336 gatcgtcgcccaccaaagtagtagcc 361
||||||||||| ||||||||||||||
Sbjct: 155 gatcgtcgccccccaaagtagtagcc 180
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 224,666
Number of Sequences: 832831
Number of extensions: 224666
Number of successful extensions: 71099
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70946
Number of HSP's gapped (non-prelim): 83
length of query: 660
length of database: 491,359,669
effective HSP length: 19
effective length of query: 641
effective length of database: 475,535,880
effective search space: 304818499080
effective search space used: 304818499080
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)