BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493961.2.1
(733 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW238378.1|CW238378 104_695_11216698_116_37418_043 Sorgh... 803 0.0
gb|CD220137.1|CD220137 CCC1_65_A10.b1_A007 Callus culture/c... 781 0.0
gb|CW285403.1|CW285403 104_762_11410313_148_35499_069 Sorgh... 523 e-147
gb|CW372927.1|CW372927 fsbb001f049a23k0 Sorghum methylation... 377 e-102
gb|CW474231.1|CW474231 fsbb001f229p13f0 Sorghum methylation... 224 9e-057
gb|BZ780884.1|BZ780884 ii21d07.g1 WGS-SbicolorF (DH5a methy... 56 5e-006
gb|CF482161.1|CF482161 POL1_5_F09.b1_A002 Pollen Sorghum bi... 48 0.001
gb|CW058700.1|CW058700 104_301_10518886_114_30160 Sorghum m... 42 0.071
gb|CW059684.1|CW059684 104_302_10519462_114_30165 Sorghum m... 42 0.071
gb|CW060796.1|CW060796 104_304_10520052_115_30144 Sorghum m... 42 0.071
gb|CW069905.1|CW069905 104_320_10526223_1_30089 Sorghum met... 42 0.071
gb|CW119413.1|CW119413 104_496_11108754_148_34633_073 Sorgh... 42 0.071
gb|CW216402.1|CW216402 104_649_11195097_148_37462_043 Sorgh... 42 0.071
gb|CW217098.1|CW217098 104_650_11195476_116_37132_012 Sorgh... 42 0.071
gb|CW217099.1|CW217099 104_650_11195476_148_37131_012 Sorgh... 42 0.071
gb|CW261852.1|CW261852 104_729_11229737_116_35209_077 Sorgh... 42 0.071
gb|CW273662.1|CW273662 104_746_11404019_148_35368_044 Sorgh... 42 0.071
gb|CW285402.1|CW285402 104_762_11410313_116_35503_069 Sorgh... 42 0.071
gb|CW295416.1|CW295416 104_776_11460918_116_35617_019 Sorgh... 42 0.071
gb|CW295417.1|CW295417 104_776_11460918_148_35613_019 Sorgh... 42 0.071
gb|CW485924.1|CW485924 fsbb001f248o11k0 Sorghum methylation... 42 0.071
gb|CD227098.1|CD227098 CCC1_4_E12.b1_A007 Callus culture/ce... 42 0.071
gb|CN130358.1|CN130358 RHOH1_41_A07.b1_A002 Acid- and alkal... 42 0.071
gb|CW223995.1|CW223995 104_660_11203212_116_37444_046 Sorgh... 40 0.28
>gb|CW238378.1|CW238378 104_695_11216698_116_37418_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11216698, DNA
sequence
Length = 672
Score = 803 bits (405), Expect = 0.0
Identities = 499/530 (94%), Gaps = 9/530 (1%)
Strand = Plus / Plus
Query: 131 taataacaaccggaaattcacgtcgatcagctagtcactgcctttgcagggtaatcgaac 190
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 taataacagccggaaattcacgtcgatcagctagtcactgcctttgcagggtaatcgaac 179
Query: 191 ggcagtggctgcacgtcgtcactgagcgaactggcgtgcctgaaaccgtacgccctcagc 250
|||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct: 180 ggcagtggctccacgtcgtcactgagcggaccggcgtgccggaaaccgtacgccctcagc 239
Query: 251 acctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgtccccggag 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 acctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgtccccggag 299
Query: 311 tagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgcgtcacgaacggg 370
||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 300 tagtgctcgttccgctgcccgctgcacggctggcaccccgtgaagtgcgtcacgaacggg 359
Query: 371 cggcgccacccgtgcaccccggtctccgccagcccggccccgcccagggcggcgttcctt 430
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 360 cggcgccacccgtgcaccccggtctccgccagcccggccccggccagggcggcgtccctt 419
Query: 431 gccaccgcgtactccgcgtgctccctctccgcgtgccgcctccgcagcgcggcagctccc 490
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 420 gccgccgcgtactccgcgtgctccctctccgcgtgccgcctccgcagcgcggcagccccc 479
Query: 491 ggccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacgatctcc 550
|| || ||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 480 gggcggcgctccatcgcctcgtaccgctccgtcatgttcccgagccgccccacgatctcc 539
Query: 551 atccagtagccctcgaagtagtagccgctctccaggaacaccttgtcccgcca---ccgg 607
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 540 gcccagtagccctcgaagtagtagtcgctctccaggaacaccttgtcccgccacggccgg 599
Query: 608 ctgc------cctcctgcagcagcatgtacacgagcgcggactggtcgtc 651
|||| ||| |||||||||||||||||||||||| |||||||||||
Sbjct: 600 ctgcccttctccttctgcagcagcatgtacacgagcgccgactggtcgtc 649
>gb|CD220137.1|CD220137 CCC1_65_A10.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_65_A10_A007 3', mRNA sequence
Length = 622
Score = 781 bits (394), Expect = 0.0
Identities = 454/474 (95%)
Strand = Plus / Minus
Query: 131 taataacaaccggaaattcacgtcgatcagctagtcactgcctttgcagggtaatcgaac 190
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 taataacagccggaaattcacgtcgatcagctagtcactgcctttgcagggtaatcgaac 454
Query: 191 ggcagtggctgcacgtcgtcactgagcgaactggcgtgcctgaaaccgtacgccctcagc 250
|||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct: 453 ggcagtggctccacgtcgtcactgagcggaccggcgtgccggaaaccgtacgccctcagc 394
Query: 251 acctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgtccccggag 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 acctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgtccccggag 334
Query: 311 tagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgcgtcacgaacggg 370
||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 333 tagtgctcgttccgctgcccgctgcacggctggcaccccgtgaagtgcgtcacgaacggg 274
Query: 371 cggcgccacccgtgcaccccggtctccgccagcccggccccgcccagggcggcgttcctt 430
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 273 cggcgccacccgtgcaccccggtctccgccagcccggccccggccagggcggcgtccctt 214
Query: 431 gccaccgcgtactccgcgtgctccctctccgcgtgccgcctccgcagcgcggcagctccc 490
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 213 gccgccgcgtactccgcgtgctccctctccgcgtgccgcctccgcagcgcggcagccccc 154
Query: 491 ggccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacgatctcc 550
|| || ||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 153 gggcggcgctccatcgcctcgtaccgctccgtcatgttcccgagccgccccacgatctcc 94
Query: 551 atccagtagccctcgaagtagtagccgctctccaggaacaccttgtcccgccac 604
|||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 93 gcccagtagccctcgaagtagtagtcgctctccaggaacaccttgtcccgccac 40
>gb|CW285403.1|CW285403 104_762_11410313_148_35499_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410313, DNA
sequence
Length = 644
Score = 523 bits (264), Expect = e-147
Identities = 297/308 (96%)
Strand = Plus / Minus
Query: 131 taataacaaccggaaattcacgtcgatcagctagtcactgcctttgcagggtaatcgaac 190
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 taataacagccggaaattcacgtcgatcagctagtcactgcctttgcagggtaatcgaac 249
Query: 191 ggcagtggctgcacgtcgtcactgagcgaactggcgtgcctgaaaccgtacgccctcagc 250
|||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct: 248 ggcagtggctccacgtcgtcactgagcggaccggcgtgccggaaaccgtacgccctcagc 189
Query: 251 acctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgtccccggag 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 acctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcgcagctgtccccggag 129
Query: 311 tagtgctcgttgcgctgcccactgcacggctgacaccccgtgaagtgcgtcacgaacggg 370
||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 128 tagtgctcgttccgctgcccgctgcacggctggcaccccgtgaagtgcgtcacgaacggg 69
Query: 371 cggcgccacccgtgcaccccggtctccgccagcccggccccgcccagggcggcgttcctt 430
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 68 cggcgccacccgtgcaccccggtctccgccagcccggccccggccagggcggcgtccctt 9
Query: 431 gccaccgc 438
||| ||||
Sbjct: 8 gccgccgc 1
Score = 42.1 bits (21), Expect = 0.071
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 6 ttatagcatgattcgttatactgtaaccggaac 38
||||||||||||| |||| ||||||||| ||||
Sbjct: 476 ttatagcatgattagttaaactgtaaccagaac 444
>gb|CW372927.1|CW372927 fsbb001f049a23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f049a23, DNA
sequence
Length = 365
Score = 377 bits (190), Expect = e-102
Identities = 269/295 (91%), Gaps = 9/295 (3%)
Strand = Plus / Minus
Query: 366 acgggcggcgccacccgtgcaccccggtctccgccagcccggccccgcccagggcggcgt 425
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 365 acgggcggcgccacccgtgcaccccggtctccgccagcccggccccgaccagaacggcgt 306
Query: 426 tccttgccaccgcgtactccgcgtgctccctctccgcgtgccgcctccgcagcgcggcag 485
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cccttgccgctgcgtactccgcgtgctccctctccgcgtgccgcctccgcagcgcggcag 246
Query: 486 ctcccggccgccgctccatcgcctcgtacctctccgtcatgttggcgagccgccccacga 545
| ||||| || ||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 245 cccccgggcggcgctccatcgcctcgtaccgctccgtcatgttcccgagccgccccacga 186
Query: 546 tctccatccagtagccctcgaagtagtagccgctctccaggaacaccttgtcccgcca-- 603
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 185 tctccgcccagtagccctcgaagtagtagtcgctctccaggaacaccttgtcccgccacg 126
Query: 604 -ccggctgc------cctcctgcagcagcatgtacacgagcgcggactggtcgtc 651
|||||||| ||| |||||||||||||||||||||||| |||||||||||
Sbjct: 125 gccggctgcccttctccttctgcagcagcatgtacacgagcgccgactggtcgtc 71
>gb|CW474231.1|CW474231 fsbb001f229p13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229p13, DNA
sequence
Length = 220
Score = 224 bits (113), Expect = 9e-057
Identities = 152/165 (92%)
Strand = Plus / Plus
Query: 131 taataacaaccggaaattcacgtcgatcagctagtcactgcctttgcagggtaatcgaac 190
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 taataacagccggaaattcacgtcgatcagctagtcactgcctttgcagggtaatcgaac 115
Query: 191 ggcagtggctgcacgtcgtcactgagcgaactggcgtgcctgaaaccgtacgccctcagc 250
||||| |||| |||||||||||||| || || |||||||| |||||||||||||| ||||
Sbjct: 116 ggcagcggctccacgtcgtcactgaccggaccggcgtgccggaaaccgtacgcccccagc 175
Query: 251 acctggtcgtcggcgaagttgagcgcgcggcgcatgccctggtcg 295
||||||||||||||||| | || | |||||||||||||||||||
Sbjct: 176 acctggtcgtcggcgaaatagaaagtgcggcgcatgccctggtcg 220
>gb|BZ780884.1|BZ780884 ii21d07.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii21d07, DNA sequence
Length = 605
Score = 56.0 bits (28), Expect = 5e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 338 ggctgacaccccgtgaagtgcgtcacgaacgggcggcgccaccc 381
||||| || |||||||||||||||||||| ||||| ||||||||
Sbjct: 236 ggctggcaacccgtgaagtgcgtcacgaaggggcgccgccaccc 279
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 622 cagcatgtacacgagcgcggactggtcgtc 651
||||| |||||||||||| |||||||||||
Sbjct: 550 cagcaggtacacgagcgccgactggtcgtc 579
Score = 44.1 bits (22), Expect = 0.018
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 540 ccacgatctccatccagtagccctcgaagtagtagccg 577
||||||||||| |||||| |||| |||||||||||||
Sbjct: 462 ccacgatctccgcccagtacccctggaagtagtagccg 499
>gb|CF482161.1|CF482161 POL1_5_F09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_5_F09_A002 3', mRNA sequence
Length = 385
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 250 cacctggtcgtcggcgaagttgagcgcgcggcgcat 285
|||||||||||||||||| |||||||||||||||
Sbjct: 107 cacctggtcgtcggcgaacccgagcgcgcggcgcat 72
>gb|CW058700.1|CW058700 104_301_10518886_114_30160 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518886, DNA
sequence
Length = 550
Score = 42.1 bits (21), Expect = 0.071
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 632 acgagcgcggactggtcgtcg 652
|||||||||||||||||||||
Sbjct: 185 acgagcgcggactggtcgtcg 205
>gb|CW059684.1|CW059684 104_302_10519462_114_30165 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519462, DNA
sequence
Length = 574
Score = 42.1 bits (21), Expect = 0.071
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 632 acgagcgcggactggtcgtcg 652
|||||||||||||||||||||
Sbjct: 185 acgagcgcggactggtcgtcg 205
>gb|CW060796.1|CW060796 104_304_10520052_115_30144 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10520052, DNA
sequence
Length = 554
Score = 42.1 bits (21), Expect = 0.071
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 248 agcacctggtcgtcggcgaagttga 272
|||||||||| ||||||||||||||
Sbjct: 266 agcacctggttgtcggcgaagttga 290
>gb|CW069905.1|CW069905 104_320_10526223_1_30089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10526223, DNA
sequence
Length = 550
Score = 42.1 bits (21), Expect = 0.071
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 248 agcacctggtcgtcggcgaagttga 272
|||||||||| ||||||||||||||
Sbjct: 231 agcacctggttgtcggcgaagttga 255
>gb|CW119413.1|CW119413 104_496_11108754_148_34633_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11108754, DNA
sequence
Length = 582
Score = 42.1 bits (21), Expect = 0.071
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 418 ggcggcgttccttgccaccgcgtactccgcgtgctccctctccgcgtgccgcctccgcag 477
||||||||||| ||| |||||||| | |||||||| ||||||||||| || ||| ||
Sbjct: 39 ggcggcgttccgcgccgccgcgtaccgcaggtgctcccgctccgcgtgcctccgccggag 98
Query: 478 cgcgg 482
|||||
Sbjct: 99 cgcgg 103
>gb|CW216402.1|CW216402 104_649_11195097_148_37462_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195097, DNA
sequence
Length = 552
Score = 42.1 bits (21), Expect = 0.071
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 632 acgagcgcggactggtcgtcg 652
|||||||||||||||||||||
Sbjct: 444 acgagcgcggactggtcgtcg 464
Score = 42.1 bits (21), Expect = 0.071
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 248 agcacctggtcgtcggcgaagttga 272
|||||||||| ||||||||||||||
Sbjct: 129 agcacctggttgtcggcgaagttga 153
>gb|CW217098.1|CW217098 104_650_11195476_116_37132_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195476, DNA
sequence
Length = 610
Score = 42.1 bits (21), Expect = 0.071
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 632 acgagcgcggactggtcgtcg 652
|||||||||||||||||||||
Sbjct: 257 acgagcgcggactggtcgtcg 237
>gb|CW217099.1|CW217099 104_650_11195476_148_37131_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195476, DNA
sequence
Length = 586
Score = 42.1 bits (21), Expect = 0.071
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 248 agcacctggtcgtcggcgaagttga 272
|||||||||| ||||||||||||||
Sbjct: 176 agcacctggttgtcggcgaagttga 200
>gb|CW261852.1|CW261852 104_729_11229737_116_35209_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229737, DNA
sequence
Length = 641
Score = 42.1 bits (21), Expect = 0.071
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 248 agcacctggtcgtcggcgaagttga 272
|||||||||| ||||||||||||||
Sbjct: 143 agcacctggttgtcggcgaagttga 167
>gb|CW273662.1|CW273662 104_746_11404019_148_35368_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404019, DNA
sequence
Length = 594
Score = 42.1 bits (21), Expect = 0.071
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 418 ggcggcgttccttgccaccgcgtactccgcgtgctccctctccgcgtgccgcctccgcag 477
||||||||||| ||| |||||||| | |||||||| ||||||||||| || ||| ||
Sbjct: 47 ggcggcgttccgcgccgccgcgtaccgcaggtgctcccgctccgcgtgcctccgccggag 106
Query: 478 cgcgg 482
|||||
Sbjct: 107 cgcgg 111
>gb|CW285402.1|CW285402 104_762_11410313_116_35503_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410313, DNA
sequence
Length = 594
Score = 42.1 bits (21), Expect = 0.071
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 6 ttatagcatgattcgttatactgtaaccggaac 38
||||||||||||| |||| ||||||||| ||||
Sbjct: 506 ttatagcatgattagttaaactgtaaccagaac 538
>gb|CW295416.1|CW295416 104_776_11460918_116_35617_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11460918, DNA
sequence
Length = 713
Score = 42.1 bits (21), Expect = 0.071
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 248 agcacctggtcgtcggcgaagttga 272
|||||||||| ||||||||||||||
Sbjct: 249 agcacctggttgtcggcgaagttga 273
>gb|CW295417.1|CW295417 104_776_11460918_148_35613_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11460918, DNA
sequence
Length = 621
Score = 42.1 bits (21), Expect = 0.071
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 248 agcacctggtcgtcggcgaagttga 272
|||||||||| ||||||||||||||
Sbjct: 612 agcacctggttgtcggcgaagttga 588
>gb|CW485924.1|CW485924 fsbb001f248o11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f248o11, DNA
sequence
Length = 551
Score = 42.1 bits (21), Expect = 0.071
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 248 agcacctggtcgtcggcgaagttga 272
|||||||||| ||||||||||||||
Sbjct: 8 agcacctggttgtcggcgaagttga 32
>gb|CD227098.1|CD227098 CCC1_4_E12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_4_E12_A007 3', mRNA sequence
Length = 658
Score = 42.1 bits (21), Expect = 0.071
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 248 agcacctggtcgtcggcgaagttga 272
|||||||||| ||||||||||||||
Sbjct: 410 agcacctggttgtcggcgaagttga 386
>gb|CN130358.1|CN130358 RHOH1_41_A07.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_41_A07_A002 3', mRNA sequence
Length = 729
Score = 42.1 bits (21), Expect = 0.071
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 248 agcacctggtcgtcggcgaagttga 272
|||||||||| ||||||||||||||
Sbjct: 408 agcacctggttgtcggcgaagttga 384
>gb|CW223995.1|CW223995 104_660_11203212_116_37444_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11203212, DNA
sequence
Length = 575
Score = 40.1 bits (20), Expect = 0.28
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 630 acacgagcgcggactggtcg 649
||||||||||||||||||||
Sbjct: 41 acacgagcgcggactggtcg 60
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 194,714
Number of Sequences: 832831
Number of extensions: 194714
Number of successful extensions: 54386
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54335
Number of HSP's gapped (non-prelim): 51
length of query: 733
length of database: 491,359,669
effective HSP length: 20
effective length of query: 713
effective length of database: 474,703,049
effective search space: 338463273937
effective search space used: 338463273937
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)