BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493645.2.1
(870 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE917893.1|BE917893 OV1_7_D09.b1_A002 Ovary 1 (OV1) Sorg... 404 e-111
gb|BG047808.1|BG047808 OV1_28_A11.b1_A002 Ovary 1 (OV1) Sor... 404 e-111
gb|BG048131.1|BG048131 OV1_28_A11.g1_A002 Ovary 1 (OV1) Sor... 404 e-111
gb|BG239810.1|BG239810 OV1_29_C11.g1_A002 Ovary 1 (OV1) Sor... 404 e-111
gb|BG240380.1|BG240380 OV1_29_C11.b1_A002 Ovary 1 (OV1) Sor... 404 e-111
gb|BE917811.1|BE917811 OV1_7_D09.g1_A002 Ovary 1 (OV1) Sorg... 353 2e-095
gb|CW136130.1|CW136130 104_521_11118216_148_34841_096 Sorgh... 327 1e-087
gb|CW299874.1|CW299874 104_783_11463346_116_36252_047 Sorgh... 327 1e-087
gb|CW499540.1|CW499540 fsbb001f294f22f0 Sorghum methylation... 170 1e-040
gb|CW480391.1|CW480391 fsbb001f239h01f0 Sorghum methylation... 86 6e-015
gb|CW207029.1|CW207029 104_636_11187899_148_36967_048 Sorgh... 48 0.001
gb|CW342522.1|CW342522 104_844_11486917_116_36177_057 Sorgh... 48 0.001
gb|CW342523.1|CW342523 104_844_11486917_148_36178_057 Sorgh... 48 0.001
gb|CW401652.1|CW401652 fsbb001f092i23k0 Sorghum methylation... 48 0.001
gb|CX606188.1|CX606188 ANR1_1_D05.g1_A002 Anaerobic roots S... 48 0.001
gb|CX613362.1|CX613362 GABR1_7_F02.g1_A002 GA- or brassinol... 48 0.001
gb|BZ331871.1|BZ331871 hx23e10.b1 WGS-SbicolorF (JM107 adap... 46 0.005
gb|BZ780846.1|BZ780846 ii20h11.g1 WGS-SbicolorF (DH5a methy... 46 0.005
gb|CW164115.1|CW164115 104_572_11151816_116_36464_096 Sorgh... 46 0.005
gb|CL164595.1|CL164595 104_358_10808016_116_31815_384 Sorgh... 44 0.021
gb|CL169300.1|CL169300 104_367_10812520_116_31787_376 Sorgh... 44 0.021
gb|CL169301.1|CL169301 104_367_10812520_148_31786_376 Sorgh... 44 0.021
gb|CL190070.1|CL190070 104_407_10905822_114_32478_017 Sorgh... 44 0.021
gb|CW028466.1|CW028466 104_255_10499112_114_30394 Sorghum m... 44 0.021
gb|CW028467.1|CW028467 104_255_10499112_116_30393 Sorghum m... 44 0.021
gb|CW106442.1|CW106442 104_476_11095987_148_34462_078 Sorgh... 44 0.021
gb|CW139275.1|CW139275 104_529_11135150_148_34909_057 Sorgh... 44 0.021
gb|CW325094.1|CW325094 104_819_11477511_116_35916_050 Sorgh... 44 0.021
gb|BZ329294.1|BZ329294 hv85a01.b1 WGS-SbicolorF (JM107 adap... 42 0.084
gb|CW039714.1|CW039714 104_272_10505653_114_30389 Sorghum m... 42 0.084
gb|CW314581.1|CW314581 104_805_11471905_148_35819_009 Sorgh... 42 0.084
gb|CW413480.1|CW413480 fsbb001f112k13f0 Sorghum methylation... 42 0.084
gb|CW431326.1|CW431326 fsbb001f145h13k0 Sorghum methylation... 42 0.084
gb|CW432448.1|CW432448 fsbb001f147c17f0 Sorghum methylation... 42 0.084
gb|CW435785.1|CW435785 fsbb001f152b16f0 Sorghum methylation... 42 0.084
gb|CW443292.1|CW443292 fsbb001f163f07f0 Sorghum methylation... 42 0.084
gb|CW475631.1|CW475631 fsbb001f232b07k0 Sorghum methylation... 42 0.084
gb|CB925499.1|CB925499 ABA1_33_F02.g1_A012 Abscisic acid-tr... 42 0.084
gb|BZ340350.1|BZ340350 ic38d02.g1 WGS-SbicolorF (JM107 adap... 40 0.33
gb|BZ343645.1|BZ343645 ho59d03.b1 WGS-SbicolorF (JM107 adap... 40 0.33
gb|BZ366922.1|BZ366922 id01c02.b1 WGS-SbicolorF (JM107 adap... 40 0.33
gb|CL152216.1|CL152216 104_335_10779804_114_31363_204 Sorgh... 40 0.33
gb|CL196467.1|CL196467 104_422_10943074_114_32319_037 Sorgh... 40 0.33
gb|CW020717.1|CW020717 104_109_10409129_114_30493 Sorghum m... 40 0.33
gb|CW082043.1|CW082043 104_422_10943074_114_32348_037 Sorgh... 40 0.33
gb|CW091748.1|CW091748 104_453_10998746_114_33031_001 Sorgh... 40 0.33
gb|CW112301.1|CW112301 104_486_11104811_116_34545_046 Sorgh... 40 0.33
gb|CW112302.1|CW112302 104_486_11104811_148_34541_046 Sorgh... 40 0.33
gb|CW113789.1|CW113789 104_488_11105641_116_34559_011 Sorgh... 40 0.33
gb|CW132001.1|CW132001 104_515_11115977_148_34794_077 Sorgh... 40 0.33
gb|CW175311.1|CW175311 104_587_11157871_116_36570_020 Sorgh... 40 0.33
gb|CW175312.1|CW175312 104_587_11157871_148_36839_020 Sorgh... 40 0.33
gb|CW214527.1|CW214527 104_646_11194063_116_37050_024 Sorgh... 40 0.33
gb|CW227811.1|CW227811 104_667_11206015_148_37244_026 Sorgh... 40 0.33
gb|CW240451.1|CW240451 104_699_11218223_148_37538_094 Sorgh... 40 0.33
gb|CW248029.1|CW248029 104_709_11222076_116_35030_044 Sorgh... 40 0.33
gb|CW253866.1|CW253866 104_717_11225342_116_35111_051 Sorgh... 40 0.33
gb|CW253867.1|CW253867 104_717_11225342_148_35107_051 Sorgh... 40 0.33
gb|CW254737.1|CW254737 104_719_11225841_116_35124_047 Sorgh... 40 0.33
gb|CW254738.1|CW254738 104_719_11225841_148_35128_047 Sorgh... 40 0.33
gb|CW257213.1|CW257213 104_722_11227215_116_35150_054 Sorgh... 40 0.33
gb|CW274504.1|CW274504 104_747_11404462_116_35377_089 Sorgh... 40 0.33
gb|CW323884.1|CW323884 104_818_11476867_148_35906_076 Sorgh... 40 0.33
gb|CW356579.1|CW356579 fsbb001f021l21f0 Sorghum methylation... 40 0.33
gb|CW375671.1|CW375671 fsbb001f053c11k0 Sorghum methylation... 40 0.33
gb|CW406138.1|CW406138 fsbb001f099a08f0 Sorghum methylation... 40 0.33
gb|CW430231.1|CW430231 fsbb001f143n14f0 Sorghum methylation... 40 0.33
gb|BE356902.1|BE356902 DG1_145_A07.b1_A002 Dark Grown 1 (DG... 40 0.33
gb|BE359785.1|BE359785 DG1_57_A11.g2_A002 Dark Grown 1 (DG1... 40 0.33
gb|BE359845.1|BE359845 DG1_57_A03.g2_A002 Dark Grown 1 (DG1... 40 0.33
gb|BG946870.1|BG946870 IP1_1_G02.g1_A002 Immature pannicle ... 40 0.33
gb|BG946951.1|BG946951 IP1_1_G02.b1_A002 Immature pannicle ... 40 0.33
gb|CD203744.1|CD203744 HS1_1_C09.g1_A012 Heat-shocked seedl... 40 0.33
gb|CD228962.1|CD228962 CCC1_11_B10.b1_A007 Callus culture/c... 40 0.33
gb|CD231885.1|CD231885 SS1_30_B04.g1_A012 Salt-stressed see... 40 0.33
gb|CD430005.1|CD430005 ETH1_16_H03.g1_A002 Ethylene-treated... 40 0.33
gb|CF429725.1|CF429725 PH1_23_E08.g1_A002 Phosphorous-defic... 40 0.33
gb|CN149296.1|CN149296 WOUND1_61_H07.g1_A002 Wounded leaves... 40 0.33
>gb|BE917893.1|BE917893 OV1_7_D09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 625
Score = 404 bits (204), Expect = e-111
Identities = 234/244 (95%)
Strand = Plus / Plus
Query: 270 tcctcgtcctcctcctggcgctgccttccctccgcgtctccatggctggatcagggttct 329
||||||||||||||||||||| |||||| ||||| ||||||||||||||||||| |||||
Sbjct: 122 tcctcgtcctcctcctggcgccgccttcgctccgtgtctccatggctggatcagcgttct 181
Query: 330 gcgacggcaagtgcgcggtgaggtgctccaaggcgagccggcacgacgactgcctcaagt 389
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gcgacggcaagtgcggggtgaggtgctccaaggcgagccggcacgacgactgcctcaagt 241
Query: 390 actgcgggatctgctgcgccacctgcaactgcgtgccgtccgggaccgcgggcaacaagg 449
||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||
Sbjct: 242 actgcgggatctgctgcgccagctgcaactgcgtgccgtccggcaccgcgggccacaagg 301
Query: 450 acgagtgcccatgctaccgcgacatgaccaccggacacggcaaccgcaccaggcccaagt 509
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 302 acgagtgcccctgctaccgcgacatgaccaccggccacggcaaccgcaccaggcccaagt 361
Query: 510 gccc 513
||||
Sbjct: 362 gccc 365
>gb|BG047808.1|BG047808 OV1_28_A11.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 621
Score = 404 bits (204), Expect = e-111
Identities = 234/244 (95%)
Strand = Plus / Plus
Query: 270 tcctcgtcctcctcctggcgctgccttccctccgcgtctccatggctggatcagggttct 329
||||||||||||||||||||| |||||| ||||| ||||||||||||||||||| |||||
Sbjct: 122 tcctcgtcctcctcctggcgccgccttcgctccgtgtctccatggctggatcagcgttct 181
Query: 330 gcgacggcaagtgcgcggtgaggtgctccaaggcgagccggcacgacgactgcctcaagt 389
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gcgacggcaagtgcggggtgaggtgctccaaggcgagccggcacgacgactgcctcaagt 241
Query: 390 actgcgggatctgctgcgccacctgcaactgcgtgccgtccgggaccgcgggcaacaagg 449
||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||
Sbjct: 242 actgcgggatctgctgcgccagctgcaactgcgtgccgtccggcaccgcgggccacaagg 301
Query: 450 acgagtgcccatgctaccgcgacatgaccaccggacacggcaaccgcaccaggcccaagt 509
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 302 acgagtgcccctgctaccgcgacatgaccaccggccacggcaaccgcaccaggcccaagt 361
Query: 510 gccc 513
||||
Sbjct: 362 gccc 365
>gb|BG048131.1|BG048131 OV1_28_A11.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 643
Score = 404 bits (204), Expect = e-111
Identities = 234/244 (95%)
Strand = Plus / Plus
Query: 270 tcctcgtcctcctcctggcgctgccttccctccgcgtctccatggctggatcagggttct 329
||||||||||||||||||||| |||||| ||||| ||||||||||||||||||| |||||
Sbjct: 93 tcctcgtcctcctcctggcgccgccttcgctccgtgtctccatggctggatcagcgttct 152
Query: 330 gcgacggcaagtgcgcggtgaggtgctccaaggcgagccggcacgacgactgcctcaagt 389
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 gcgacggcaagtgcggggtgaggtgctccaaggcgagccggcacgacgactgcctcaagt 212
Query: 390 actgcgggatctgctgcgccacctgcaactgcgtgccgtccgggaccgcgggcaacaagg 449
||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||
Sbjct: 213 actgcgggatctgctgcgccagctgcaactgcgtgccgtccggcaccgcgggccacaagg 272
Query: 450 acgagtgcccatgctaccgcgacatgaccaccggacacggcaaccgcaccaggcccaagt 509
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 273 acgagtgcccctgctaccgcgacatgaccaccggccacggcaaccgcaccaggcccaagt 332
Query: 510 gccc 513
||||
Sbjct: 333 gccc 336
>gb|BG239810.1|BG239810 OV1_29_C11.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 640
Score = 404 bits (204), Expect = e-111
Identities = 234/244 (95%)
Strand = Plus / Plus
Query: 270 tcctcgtcctcctcctggcgctgccttccctccgcgtctccatggctggatcagggttct 329
||||||||||||||||||||| |||||| ||||| ||||||||||||||||||| |||||
Sbjct: 84 tcctcgtcctcctcctggcgccgccttcgctccgtgtctccatggctggatcagcgttct 143
Query: 330 gcgacggcaagtgcgcggtgaggtgctccaaggcgagccggcacgacgactgcctcaagt 389
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 gcgacggcaagtgcggggtgaggtgctccaaggcgagccggcacgacgactgcctcaagt 203
Query: 390 actgcgggatctgctgcgccacctgcaactgcgtgccgtccgggaccgcgggcaacaagg 449
||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||
Sbjct: 204 actgcgggatctgctgcgccagctgcaactgcgtgccgtccggcaccgcgggccacaagg 263
Query: 450 acgagtgcccatgctaccgcgacatgaccaccggacacggcaaccgcaccaggcccaagt 509
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 264 acgagtgcccctgctaccgcgacatgaccaccggccacggcaaccgcaccaggcccaagt 323
Query: 510 gccc 513
||||
Sbjct: 324 gccc 327
>gb|BG240380.1|BG240380 OV1_29_C11.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 612
Score = 404 bits (204), Expect = e-111
Identities = 234/244 (95%)
Strand = Plus / Plus
Query: 270 tcctcgtcctcctcctggcgctgccttccctccgcgtctccatggctggatcagggttct 329
||||||||||||||||||||| |||||| ||||| ||||||||||||||||||| |||||
Sbjct: 110 tcctcgtcctcctcctggcgccgccttcgctccgtgtctccatggctggatcagcgttct 169
Query: 330 gcgacggcaagtgcgcggtgaggtgctccaaggcgagccggcacgacgactgcctcaagt 389
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 gcgacggcaagtgcggggtgaggtgctccaaggcgagccggcacgacgactgcctcaagt 229
Query: 390 actgcgggatctgctgcgccacctgcaactgcgtgccgtccgggaccgcgggcaacaagg 449
||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||
Sbjct: 230 actgcgggatctgctgcgccagctgcaactgcgtgccgtccggcaccgcgggccacaagg 289
Query: 450 acgagtgcccatgctaccgcgacatgaccaccggacacggcaaccgcaccaggcccaagt 509
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 290 acgagtgcccctgctaccgcgacatgaccaccggccacggcaaccgcaccaggcccaagt 349
Query: 510 gccc 513
||||
Sbjct: 350 gccc 353
>gb|BE917811.1|BE917811 OV1_7_D09.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 543
Score = 353 bits (178), Expect = 2e-095
Identities = 205/214 (95%)
Strand = Plus / Plus
Query: 300 tccgcgtctccatggctggatcagggttctgcgacggcaagtgcgcggtgaggtgctcca 359
|||| ||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||
Sbjct: 1 tccgtgtctccatggctggatcagcgttctgccacggcaagtgcggggtgaggtgctcca 60
Query: 360 aggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccacctgcaact 419
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 61 aggcgagccggcacgacgactgcctcaagtactgcgggatctgctgcgccagctgcaact 120
Query: 420 gcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcgacatgacca 479
||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 121 gcgtgccgtccggcaccgcgggccacaaggacgagtgcccctgctaccgcgacatgacca 180
Query: 480 ccggacacggcaaccgcaccaggcccaagtgccc 513
|||| |||||||||||||||||||||||||||||
Sbjct: 181 ccggccacggcaaccgcaccaggcccaagtgccc 214
>gb|CW136130.1|CW136130 104_521_11118216_148_34841_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11118216, DNA
sequence
Length = 406
Score = 327 bits (165), Expect = 1e-087
Identities = 183/189 (96%)
Strand = Plus / Plus
Query: 325 gttctgcgacggcaagtgcgcggtgaggtgctccaaggcgagccggcacgacgactgcct 384
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 31 gttctgcgacggcaagtgcggggtgaggtgctccaaggcgagccggcacgacgactgcct 90
Query: 385 caagtactgcgggatctgctgcgccacctgcaactgcgtgccgtccgggaccgcgggcaa 444
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
Sbjct: 91 caagtactgcgggatctgctgcgccagctgcaactgcgtgccgtccggcaccgcgggcca 150
Query: 445 caaggacgagtgcccatgctaccgcgacatgaccaccggacacggcaaccgcaccaggcc 504
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 151 caaggacgagtgcccctgctaccgcgacatgaccaccggccacggcaaccgcaccaggcc 210
Query: 505 caagtgccc 513
|||||||||
Sbjct: 211 caagtgccc 219
>gb|CW299874.1|CW299874 104_783_11463346_116_36252_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463346, DNA
sequence
Length = 593
Score = 327 bits (165), Expect = 1e-087
Identities = 183/189 (96%)
Strand = Plus / Plus
Query: 325 gttctgcgacggcaagtgcgcggtgaggtgctccaaggcgagccggcacgacgactgcct 384
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 139 gttctgcgacggcaagtgcggggtgaggtgctccaaggcgagccggcacgacgactgcct 198
Query: 385 caagtactgcgggatctgctgcgccacctgcaactgcgtgccgtccgggaccgcgggcaa 444
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
Sbjct: 199 caagtactgcgggatctgctgcgccagctgcaactgcgtgccgtccggcaccgcgggcca 258
Query: 445 caaggacgagtgcccatgctaccgcgacatgaccaccggacacggcaaccgcaccaggcc 504
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 259 caaggacgagtgcccctgctaccgcgacatgaccaccggccacggcaaccgcaccaggcc 318
Query: 505 caagtgccc 513
|||||||||
Sbjct: 319 caagtgccc 327
>gb|CW499540.1|CW499540 fsbb001f294f22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f294f22, DNA
sequence
Length = 682
Score = 170 bits (86), Expect = 1e-040
Identities = 98/102 (96%)
Strand = Plus / Plus
Query: 412 ctgcaactgcgtgccgtccgggaccgcgggcaacaaggacgagtgcccatgctaccgcga 471
||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||
Sbjct: 3 ctgcaactgcgtgccgtccggcaccgcgggccacaaggacgagtgcccctgctaccgcga 62
Query: 472 catgaccaccggacacggcaaccgcaccaggcccaagtgccc 513
|||||||||||| |||||||||||||||||||||||||||||
Sbjct: 63 catgaccaccggccacggcaaccgcaccaggcccaagtgccc 104
>gb|CW480391.1|CW480391 fsbb001f239h01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f239h01, DNA
sequence
Length = 673
Score = 85.7 bits (43), Expect = 6e-015
Identities = 52/55 (94%)
Strand = Plus / Minus
Query: 270 tcctcgtcctcctcctggcgctgccttccctccgcgtctccatggctggatcagg 324
||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||
Sbjct: 112 tcctcgtcctcctcctggcgccgccttcgctccgtgtctccatggctggatcagg 58
>gb|CW207029.1|CW207029 104_636_11187899_148_36967_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187899, DNA
sequence
Length = 619
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 259 cctcctcttcttcctcgtcctcct 282
||||||||||||||||||||||||
Sbjct: 207 cctcctcttcttcctcgtcctcct 230
>gb|CW342522.1|CW342522 104_844_11486917_116_36177_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11486917, DNA
sequence
Length = 662
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 259 cctcctcttcttcctcgtcctcct 282
||||||||||||||||||||||||
Sbjct: 306 cctcctcttcttcctcgtcctcct 329
>gb|CW342523.1|CW342523 104_844_11486917_148_36178_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11486917, DNA
sequence
Length = 621
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 259 cctcctcttcttcctcgtcctcct 282
||||||||||||||||||||||||
Sbjct: 461 cctcctcttcttcctcgtcctcct 438
>gb|CW401652.1|CW401652 fsbb001f092i23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f092i23, DNA
sequence
Length = 749
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 259 cctcctcttcttcctcgtcctcct 282
||||||||||||||||||||||||
Sbjct: 670 cctcctcttcttcctcgtcctcct 693
>gb|CX606188.1|CX606188 ANR1_1_D05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_1_D05_A002 5', mRNA sequence
Length = 830
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 259 cctcctcttcttcctcgtcctcct 282
||||||||||||||||||||||||
Sbjct: 448 cctcctcttcttcctcgtcctcct 425
>gb|CX613362.1|CX613362 GABR1_7_F02.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_7_F02_A002 5', mRNA sequence
Length = 761
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 259 cctcctcttcttcctcgtcctcct 282
||||||||||||||||||||||||
Sbjct: 449 cctcctcttcttcctcgtcctcct 426
>gb|BZ331871.1|BZ331871 hx23e10.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx23e10 5', DNA sequence
Length = 208
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 661 ctattattactactactactact 683
|||||||||||||||||||||||
Sbjct: 19 ctattattactactactactact 41
>gb|BZ780846.1|BZ780846 ii20h11.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii20h11, DNA sequence
Length = 575
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 661 ctattattactactactactact 683
|||||||||||||||||||||||
Sbjct: 84 ctattattactactactactact 62
>gb|CW164115.1|CW164115 104_572_11151816_116_36464_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151816, DNA
sequence
Length = 612
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 661 ctattattactactactactact 683
|||||||||||||||||||||||
Sbjct: 204 ctattattactactactactact 226
>gb|CL164595.1|CL164595 104_358_10808016_116_31815_384 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808016, DNA
sequence
Length = 718
Score = 44.1 bits (22), Expect = 0.021
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 662 tattattactactactactact 683
||||||||||||||||||||||
Sbjct: 114 tattattactactactactact 93
>gb|CL169300.1|CL169300 104_367_10812520_116_31787_376 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10812520, DNA
sequence
Length = 739
Score = 44.1 bits (22), Expect = 0.021
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 450 acgagtgcccatgctaccgcgacatg 475
|||||||||| |||||||||||||||
Sbjct: 637 acgagtgcccctgctaccgcgacatg 662
>gb|CL169301.1|CL169301 104_367_10812520_148_31786_376 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10812520, DNA
sequence
Length = 757
Score = 44.1 bits (22), Expect = 0.021
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 450 acgagtgcccatgctaccgcgacatg 475
|||||||||| |||||||||||||||
Sbjct: 223 acgagtgcccctgctaccgcgacatg 198
>gb|CL190070.1|CL190070 104_407_10905822_114_32478_017 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10905822, DNA
sequence
Length = 743
Score = 44.1 bits (22), Expect = 0.021
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 260 ctcctcttcttcctcgtcctcc 281
||||||||||||||||||||||
Sbjct: 369 ctcctcttcttcctcgtcctcc 348
>gb|CW028466.1|CW028466 104_255_10499112_114_30394 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499112, DNA
sequence
Length = 811
Score = 44.1 bits (22), Expect = 0.021
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 662 tattattactactactactact 683
||||||||||||||||||||||
Sbjct: 344 tattattactactactactact 323
>gb|CW028467.1|CW028467 104_255_10499112_116_30393 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499112, DNA
sequence
Length = 815
Score = 44.1 bits (22), Expect = 0.021
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 662 tattattactactactactact 683
||||||||||||||||||||||
Sbjct: 718 tattattactactactactact 739
>gb|CW106442.1|CW106442 104_476_11095987_148_34462_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11095987, DNA
sequence
Length = 487
Score = 44.1 bits (22), Expect = 0.021
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 662 tattattactactactactact 683
||||||||||||||||||||||
Sbjct: 268 tattattactactactactact 247
>gb|CW139275.1|CW139275 104_529_11135150_148_34909_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135150, DNA
sequence
Length = 684
Score = 44.1 bits (22), Expect = 0.021
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 662 tattattactactactactact 683
||||||||||||||||||||||
Sbjct: 562 tattattactactactactact 541
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 661 ctattattactactactacta 681
|||||||||||||||||||||
Sbjct: 200 ctattattactactactacta 180
>gb|CW325094.1|CW325094 104_819_11477511_116_35916_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477511, DNA
sequence
Length = 662
Score = 44.1 bits (22), Expect = 0.021
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 662 tattattactactactactact 683
||||||||||||||||||||||
Sbjct: 471 tattattactactactactact 492
>gb|BZ329294.1|BZ329294 hv85a01.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hv85a01 5', DNA sequence
Length = 721
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 256 tggcctcctcttcttcctcgt 276
|||||||||||||||||||||
Sbjct: 197 tggcctcctcttcttcctcgt 177
>gb|CW039714.1|CW039714 104_272_10505653_114_30389 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505653, DNA
sequence
Length = 585
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 662 tattattactactactactac 682
|||||||||||||||||||||
Sbjct: 208 tattattactactactactac 228
>gb|CW314581.1|CW314581 104_805_11471905_148_35819_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11471905, DNA
sequence
Length = 648
Score = 42.1 bits (21), Expect = 0.084
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 260 ctcctcttcttcctcgtcctcctcc 284
||||||||||||||| |||||||||
Sbjct: 494 ctcctcttcttcctcctcctcctcc 470
>gb|CW413480.1|CW413480 fsbb001f112k13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f112k13, DNA
sequence
Length = 688
Score = 42.1 bits (21), Expect = 0.084
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 260 ctcctcttcttcctcgtcctcctcc 284
||||||||||||||| |||||||||
Sbjct: 470 ctcctcttcttcctcctcctcctcc 446
>gb|CW431326.1|CW431326 fsbb001f145h13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f145h13, DNA
sequence
Length = 520
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 596 tgcatgcatacatgatacatg 616
|||||||||||||||||||||
Sbjct: 93 tgcatgcatacatgatacatg 73
>gb|CW432448.1|CW432448 fsbb001f147c17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f147c17, DNA
sequence
Length = 619
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 256 tggcctcctcttcttcctcgt 276
|||||||||||||||||||||
Sbjct: 495 tggcctcctcttcttcctcgt 515
>gb|CW435785.1|CW435785 fsbb001f152b16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f152b16, DNA
sequence
Length = 485
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 256 tggcctcctcttcttcctcgt 276
|||||||||||||||||||||
Sbjct: 281 tggcctcctcttcttcctcgt 301
>gb|CW443292.1|CW443292 fsbb001f163f07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f163f07, DNA
sequence
Length = 778
Score = 42.1 bits (21), Expect = 0.084
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 258 gcctcctcttcttcctcgtcctcct 282
|||||||| ||||||||||||||||
Sbjct: 215 gcctcctcatcttcctcgtcctcct 191
>gb|CW475631.1|CW475631 fsbb001f232b07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f232b07, DNA
sequence
Length = 748
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 662 tattattactactactactac 682
|||||||||||||||||||||
Sbjct: 51 tattattactactactactac 71
>gb|CB925499.1|CB925499 ABA1_33_F02.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_33_F02_A012 5', mRNA sequence
Length = 332
Score = 42.1 bits (21), Expect = 0.084
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 260 ctcctcttcttcctcgtcctcctcc 284
||||||||||||||| |||||||||
Sbjct: 213 ctcctcttcttcctcctcctcctcc 189
>gb|BZ340350.1|BZ340350 ic38d02.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic38d02 5', DNA sequence
Length = 138
Score = 40.1 bits (20), Expect = 0.33
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 656 actagctattattactactactactact 683
|||||||| || ||||||||||||||||
Sbjct: 66 actagctactactactactactactact 93
>gb|BZ343645.1|BZ343645 ho59d03.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ho59d03 5', DNA sequence
Length = 152
Score = 40.1 bits (20), Expect = 0.33
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 656 actagctattattactactactactact 683
|||||||| || ||||||||||||||||
Sbjct: 106 actagctactactactactactactact 133
>gb|BZ366922.1|BZ366922 id01c02.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone id01c02 5', DNA sequence
Length = 521
Score = 40.1 bits (20), Expect = 0.33
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 400 ctgctgcgccacctgcaactgcgtgccg 427
|||||||||| ||||||||||||||||
Sbjct: 125 ctgctgcgcccgctgcaactgcgtgccg 152
>gb|CL152216.1|CL152216 104_335_10779804_114_31363_204 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779804, DNA
sequence
Length = 752
Score = 40.1 bits (20), Expect = 0.33
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 664 ttattactactactactact 683
||||||||||||||||||||
Sbjct: 1 ttattactactactactact 20
>gb|CL196467.1|CL196467 104_422_10943074_114_32319_037 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943074, DNA
sequence
Length = 601
Score = 40.1 bits (20), Expect = 0.33
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 257 ggcctcctcttcttcctcgtcctc 280
|||||||||||||||||| |||||
Sbjct: 160 ggcctcctcttcttcctcttcctc 137
>gb|CW020717.1|CW020717 104_109_10409129_114_30493 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10409129, DNA
sequence
Length = 651
Score = 40.1 bits (20), Expect = 0.33
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 19 agtgatgactgatgactgac 38
||||||||||||||||||||
Sbjct: 416 agtgatgactgatgactgac 397
>gb|CW082043.1|CW082043 104_422_10943074_114_32348_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943074, DNA
sequence
Length = 601
Score = 40.1 bits (20), Expect = 0.33
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 257 ggcctcctcttcttcctcgtcctc 280
|||||||||||||||||| |||||
Sbjct: 159 ggcctcctcttcttcctcttcctc 136
>gb|CW091748.1|CW091748 104_453_10998746_114_33031_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998746, DNA
sequence
Length = 692
Score = 40.1 bits (20), Expect = 0.33
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 19 agtgatgactgatgactgac 38
||||||||||||||||||||
Sbjct: 152 agtgatgactgatgactgac 133
>gb|CW112301.1|CW112301 104_486_11104811_116_34545_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104811, DNA
sequence
Length = 739
Score = 40.1 bits (20), Expect = 0.33
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 668 tactactactactactcttc 687
||||||||||||||||||||
Sbjct: 706 tactactactactactcttc 725
>gb|CW112302.1|CW112302 104_486_11104811_148_34541_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104811, DNA
sequence
Length = 632
Score = 40.1 bits (20), Expect = 0.33
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 668 tactactactactactcttc 687
||||||||||||||||||||
Sbjct: 532 tactactactactactcttc 513
>gb|CW113789.1|CW113789 104_488_11105641_116_34559_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11105641, DNA
sequence
Length = 658
Score = 40.1 bits (20), Expect = 0.33
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tattattactactactacta 681
||||||||||||||||||||
Sbjct: 555 tattattactactactacta 574
>gb|CW132001.1|CW132001 104_515_11115977_148_34794_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115977, DNA
sequence
Length = 611
Score = 40.1 bits (20), Expect = 0.33
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 400 ctgctgcgccacctgcaactgcgtgccg 427
|||||||||| ||||||||||||||||
Sbjct: 338 ctgctgcgcccgctgcaactgcgtgccg 311
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 289,681
Number of Sequences: 832831
Number of extensions: 289681
Number of successful extensions: 94499
Number of sequences better than 0.5: 78
Number of HSP's better than 0.5 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94121
Number of HSP's gapped (non-prelim): 340
length of query: 870
length of database: 491,359,669
effective HSP length: 20
effective length of query: 850
effective length of database: 474,703,049
effective search space: 403497591650
effective search space used: 403497591650
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)