BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493535.2.1
(580 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG240594.1|BG240594 OV1_31_G10.b1_A002 Ovary 1 (OV1) Sor... 315 2e-084
gb|CW498898.1|CW498898 fsbb001f293f22k0 Sorghum methylation... 236 2e-060
gb|CF758757.1|CF758757 DSAF1_36_C06.g1_A011 Drought-stresse... 180 9e-044
gb|CW498897.1|CW498897 fsbb001f293f22f0 Sorghum methylation... 92 7e-017
gb|CW317085.1|CW317085 104_808_11473228_148_35858_004 Sorgh... 54 1e-005
gb|CX618902.1|CX618902 GABR1_42_H02.b1_A002 GA- or brassino... 54 1e-005
gb|CX618987.1|CX618987 GABR1_42_H02.g1_A002 GA- or brassino... 54 1e-005
gb|CW210511.1|CW210511 104_641_11189833_116_37005_015 Sorgh... 46 0.004
gb|CW419006.1|CW419006 fsbb001f123k24f0 Sorghum methylation... 46 0.004
gb|CL188918.1|CL188918 104_405_10901921_116_32454_067 Sorgh... 42 0.056
gb|CW083789.1|CW083789 104_426_10945386_114_32377_077 Sorgh... 42 0.056
gb|CW147880.1|CW147880 104_542_11140122_148_35007_075 Sorgh... 42 0.056
gb|CW218417.1|CW218417 104_652_11196181_116_37460_063 Sorgh... 42 0.056
gb|CW255320.1|CW255320 104_719_11226170_148_35129_001 Sorgh... 42 0.056
gb|CW255976.1|CW255976 104_720_11226529_148_35134_001 Sorgh... 42 0.056
gb|BZ332705.1|BZ332705 hx30b02.g1 WGS-SbicolorF (JM107 adap... 40 0.22
gb|BZ332740.1|BZ332740 hx30d01.g1 WGS-SbicolorF (JM107 adap... 40 0.22
gb|CL164723.1|CL164723 104_359_10808104_114_31816_088 Sorgh... 40 0.22
gb|CL171732.1|CL171732 104_373_10889634_116_31777_306 Sorgh... 40 0.22
gb|CL185778.1|CL185778 104_400_10899771_114_32400_014 Sorgh... 40 0.22
gb|CW061382.1|CW061382 104_305_10520370_115_30153 Sorghum m... 40 0.22
gb|CW105293.1|CW105293 104_474_11012831_148_34448_088 Sorgh... 40 0.22
gb|CW117343.1|CW117343 104_493_11107607_116_34614_090 Sorgh... 40 0.22
gb|CW199279.1|CW199279 104_624_11183428_116_36852_010 Sorgh... 40 0.22
gb|CW240580.1|CW240580 104_699_11218293_148_37534_089 Sorgh... 40 0.22
gb|CW255069.1|CW255069 104_719_11226025_148_35128_007 Sorgh... 40 0.22
gb|CW367683.1|CW367683 fsbb001f041e09f0 Sorghum methylation... 40 0.22
gb|CW388467.1|CW388467 fsbb001f073d20k0 Sorghum methylation... 40 0.22
gb|CW448918.1|CW448918 fsbb001f182m11k0 Sorghum methylation... 40 0.22
gb|CW473825.1|CW473825 fsbb001f229g04f0 Sorghum methylation... 40 0.22
gb|CW483626.1|CW483626 fsbb001f245f18k0 Sorghum methylation... 40 0.22
gb|BE356001.1|BE356001 DG1_121_H09.b1_A002 Dark Grown 1 (DG... 40 0.22
gb|BE360380.1|BE360380 DG1_63_G06.b1_A002 Dark Grown 1 (DG1... 40 0.22
gb|BE360555.1|BE360555 DG1_64_D02.b1_A002 Dark Grown 1 (DG1... 40 0.22
gb|BE360587.1|BE360587 DG1_64_D02.g1_A002 Dark Grown 1 (DG1... 40 0.22
gb|BE600612.1|BE600612 PI1_89_C08.b1_A002 Pathogen induced ... 40 0.22
gb|BG322675.1|BG322675 EM1_41_H09.b1_A002 Embryo 1 (EM1) So... 40 0.22
gb|BG556615.1|BG556615 EM1_37_E01.b1_A002 Embryo 1 (EM1) So... 40 0.22
gb|CD205538.1|CD205538 HS1_14_B08.g1_A012 Heat-shocked seed... 40 0.22
gb|CD209520.1|CD209520 HS1_43_A05.b1_A012 Heat-shocked seed... 40 0.22
gb|CD219757.1|CD219757 CCC1_58_E03.g1_A007 Callus culture/c... 40 0.22
gb|CD233817.1|CD233817 SS1_4_E03.g1_A012 Salt-stressed seed... 40 0.22
gb|CD430046.1|CD430046 ETH1_13_A01.g1_A002 Ethylene-treated... 40 0.22
gb|CF072484.1|CF072484 FE1_3_H04.b1_A002 Iron-deficient see... 40 0.22
gb|CN133331.1|CN133331 OX1_11_C03.g1_A002 Oxidatively-stres... 40 0.22
gb|BU672128.1|BU672128 pRC-1198 pRC Sorghum halepense cDNA ... 40 0.22
>gb|BG240594.1|BG240594 OV1_31_G10.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 510
Score = 315 bits (159), Expect = 2e-084
Identities = 216/235 (91%)
Strand = Plus / Minus
Query: 259 ggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacc 318
||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct: 257 ggcagtgcgtgaggcagaagcagcggcggcggaagccgcggcacttgccgtcggggaagc 198
Query: 319 cctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacctgt 378
|||||||||||||||||||||||||||| |||||| | ||||||||| ||||||||||
Sbjct: 197 cctcggtcctgcagacgttggcgcagttttcccggcgcacgcaggggccgcggaacctgt 138
Query: 379 ggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccgacctctgcggaca 438
||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| || ||
Sbjct: 137 ggctctgcgactggcacgtcctcgcctccgccaccgccaccgccccgatctctgtggcca 78
Query: 439 gcagcagcagcatgacgaggaggacggccgtgaagagcttgcgagagagctccat 493
||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 77 cgagcagcagcatgacgaggacgacggccgtgaagagcttgcgagagagctccat 23
>gb|CW498898.1|CW498898 fsbb001f293f22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f293f22, DNA
sequence
Length = 689
Score = 236 bits (119), Expect = 2e-060
Identities = 161/175 (92%)
Strand = Plus / Plus
Query: 259 ggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacc 318
||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct: 398 ggcagtgcgtgaggcagaagcagcggcggcggaagccgcggcacttgccgtcggggaagc 457
Query: 319 cctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacctgt 378
|||||||||||||||||||||||||||| |||||| | ||||||||| ||||||||||
Sbjct: 458 cctcggtcctgcagacgttggcgcagttttcccggcgcacgcaggggccgcggaacctgt 517
Query: 379 ggctctgcgactggcacgtccgcgcctccgccaccgccaccggcccgacctctgc 433
||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 518 ggctctgcgactggcacgtcctcgcctccgccaccgccaccgccccgatctctgc 572
>gb|CF758757.1|CF758757 DSAF1_36_C06.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_36_C06_A011 3', mRNA sequence
Length = 505
Score = 180 bits (91), Expect = 9e-044
Identities = 124/135 (91%)
Strand = Plus / Minus
Query: 259 ggcagtgcgtggtgcagaagcagcggcggcggaagccgcggcacctgccgccggggaacc 318
||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct: 135 ggcagtgcgtgaggcagaagcagcggcggcggaagccgcggcacttgccgtcggggaagc 76
Query: 319 cctcggtcctgcagacgttggcgcagttggaccggcggaggcaggggccccggaacctgt 378
|||||||||||||||||||||||||||| |||||| | ||||||||| ||||||||||
Sbjct: 75 cctcggtcctgcagacgttggcgcagttttcccggcgcacgcaggggccgcggaacctgt 16
Query: 379 ggctctgcgactggc 393
|||||||||||||||
Sbjct: 15 ggctctgcgactggc 1
>gb|CW498897.1|CW498897 fsbb001f293f22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f293f22, DNA
sequence
Length = 738
Score = 91.7 bits (46), Expect = 7e-017
Identities = 51/53 (96%)
Strand = Plus / Minus
Query: 441 agcagcagcatgacgaggaggacggccgtgaagagcttgcgagagagctccat 493
||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 642 agcagcagcatgacgaggacgacgnccgtgaagagcttgcgagagagctccat 590
>gb|CW317085.1|CW317085 104_808_11473228_148_35858_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473228, DNA
sequence
Length = 712
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 312 gggaacccctcggtcctgcagacgttggcgcagtt 346
||||| ||||| |||||||||||||||||||||||
Sbjct: 258 gggaagccctccgtcctgcagacgttggcgcagtt 224
>gb|CX618902.1|CX618902 GABR1_42_H02.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_42_H02_A002 3', mRNA sequence
Length = 667
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 312 gggaacccctcggtcctgcagacgttggcgcagtt 346
||||| ||||| |||||||||||||||||||||||
Sbjct: 278 gggaagccctccgtcctgcagacgttggcgcagtt 244
>gb|CX618987.1|CX618987 GABR1_42_H02.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_42_H02_A002 5', mRNA sequence
Length = 562
Score = 54.0 bits (27), Expect = 1e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 312 gggaacccctcggtcctgcagacgttggcgcagtt 346
||||| ||||| |||||||||||||||||||||||
Sbjct: 260 gggaagccctccgtcctgcagacgttggcgcagtt 226
>gb|CW210511.1|CW210511 104_641_11189833_116_37005_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189833, DNA
sequence
Length = 607
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 432 gcggacagcagcagcagcatgacgaggagga 462
||||||||||||||||||| ||||| |||||
Sbjct: 331 gcggacagcagcagcagcaggacgacgagga 301
>gb|CW419006.1|CW419006 fsbb001f123k24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f123k24, DNA
sequence
Length = 455
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 432 gcggacagcagcagcagcatgacgaggagga 462
||||||||||||||||||| ||||| |||||
Sbjct: 338 gcggacagcagcagcagcaggacgacgagga 308
>gb|CL188918.1|CL188918 104_405_10901921_116_32454_067 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901921, DNA
sequence
Length = 635
Score = 42.1 bits (21), Expect = 0.056
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 400 gcgcctccgccaccgccaccg 420
|||||||||||||||||||||
Sbjct: 397 gcgcctccgccaccgccaccg 377
>gb|CW083789.1|CW083789 104_426_10945386_114_32377_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10945386, DNA
sequence
Length = 469
Score = 42.1 bits (21), Expect = 0.056
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 400 gcgcctccgccaccgccaccg 420
|||||||||||||||||||||
Sbjct: 137 gcgcctccgccaccgccaccg 157
>gb|CW147880.1|CW147880 104_542_11140122_148_35007_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11140122, DNA
sequence
Length = 714
Score = 42.1 bits (21), Expect = 0.056
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 400 gcgcctccgccaccgccaccg 420
|||||||||||||||||||||
Sbjct: 557 gcgcctccgccaccgccaccg 577
>gb|CW218417.1|CW218417 104_652_11196181_116_37460_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11196181, DNA
sequence
Length = 710
Score = 42.1 bits (21), Expect = 0.056
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 400 gcgcctccgccaccgccaccg 420
|||||||||||||||||||||
Sbjct: 56 gcgcctccgccaccgccaccg 76
>gb|CW255320.1|CW255320 104_719_11226170_148_35129_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226170, DNA
sequence
Length = 712
Score = 42.1 bits (21), Expect = 0.056
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 267 gtggtgcagaagcagcggcggcgga 291
||||||| |||||||||||||||||
Sbjct: 234 gtggtgctgaagcagcggcggcgga 210
>gb|CW255976.1|CW255976 104_720_11226529_148_35134_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226529, DNA
sequence
Length = 514
Score = 42.1 bits (21), Expect = 0.056
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 267 gtggtgcagaagcagcggcggcgga 291
||||||| |||||||||||||||||
Sbjct: 220 gtggtgctgaagcagcggcggcgga 196
>gb|BZ332705.1|BZ332705 hx30b02.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx30b02 5', DNA sequence
Length = 727
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 397 tccgcgcctccgccaccgccaccg 420
|||||||| |||||||||||||||
Sbjct: 309 tccgcgccaccgccaccgccaccg 332
>gb|BZ332740.1|BZ332740 hx30d01.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx30d01 5', DNA sequence
Length = 750
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 397 tccgcgcctccgccaccgccaccg 420
|||||||| |||||||||||||||
Sbjct: 298 tccgcgccaccgccaccgccaccg 321
>gb|CL164723.1|CL164723 104_359_10808104_114_31816_088 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808104, DNA
sequence
Length = 483
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 178 attcatgcatggagccatgg 197
||||||||||||||||||||
Sbjct: 444 attcatgcatggagccatgg 425
>gb|CL171732.1|CL171732 104_373_10889634_116_31777_306 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10889634, DNA
sequence
Length = 676
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 437 cagcagcagcagcatgacgaggaggacg 464
|||||||||||||| |||||| ||||||
Sbjct: 341 cagcagcagcagcaggacgagaaggacg 368
>gb|CL185778.1|CL185778 104_400_10899771_114_32400_014 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899771, DNA
sequence
Length = 668
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 397 tccgcgcctccgccaccgccaccg 420
|||||||| |||||||||||||||
Sbjct: 349 tccgcgccaccgccaccgccaccg 326
>gb|CW061382.1|CW061382 104_305_10520370_115_30153 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10520370, DNA
sequence
Length = 389
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 395 cgtccgcgcctccgccaccgccaccggc 422
|||||||||||||||| ||| |||||||
Sbjct: 247 cgtccgcgcctccgccgccggcaccggc 274
>gb|CW105293.1|CW105293 104_474_11012831_148_34448_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11012831, DNA
sequence
Length = 520
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 437 cagcagcagcagcatgacgaggaggacg 464
|||||||||||||| |||||| ||||||
Sbjct: 72 cagcagcagcagcaggacgagaaggacg 45
>gb|CW117343.1|CW117343 104_493_11107607_116_34614_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11107607, DNA
sequence
Length = 410
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 401 cgcctccgccaccgccaccg 420
||||||||||||||||||||
Sbjct: 304 cgcctccgccaccgccaccg 323
>gb|CW199279.1|CW199279 104_624_11183428_116_36852_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183428, DNA
sequence
Length = 624
Score = 40.1 bits (20), Expect = 0.22
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 305 gccgccggggaacccctcggtcctgcagacgttggcgcagttgg 348
|||||||||||| ||||||| ||| ||||||||||||||||
Sbjct: 509 gccgccggggaagttctcggtctggcacacgttggcgcagttgg 466
Score = 40.1 bits (20), Expect = 0.22
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccaccg 414
||||| ||||||||||||| |||| || ||||||||||||||
Sbjct: 443 gaaccggtggctctgcgacaggcagtgcctcgcctccgccaccg 400
>gb|CW240580.1|CW240580 104_699_11218293_148_37534_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218293, DNA
sequence
Length = 663
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 395 cgtccgcgcctccgccaccgccaccggc 422
|||||||||||||||| ||| |||||||
Sbjct: 308 cgtccgcgcctccgccgccggcaccggc 335
>gb|CW255069.1|CW255069 104_719_11226025_148_35128_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226025, DNA
sequence
Length = 655
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 397 tccgcgcctccgccaccgccaccg 420
|||||||| |||||||||||||||
Sbjct: 90 tccgcgccaccgccaccgccaccg 67
>gb|CW367683.1|CW367683 fsbb001f041e09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f041e09, DNA
sequence
Length = 612
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 401 cgcctccgccaccgccaccg 420
||||||||||||||||||||
Sbjct: 559 cgcctccgccaccgccaccg 578
>gb|CW388467.1|CW388467 fsbb001f073d20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f073d20, DNA
sequence
Length = 626
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 437 cagcagcagcagcatgacgaggaggacg 464
|||||||||||||| |||||| ||||||
Sbjct: 59 cagcagcagcagcaggacgagaaggacg 32
>gb|CW448918.1|CW448918 fsbb001f182m11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f182m11, DNA
sequence
Length = 511
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 397 tccgcgcctccgccaccgccaccg 420
|||||||| |||||||||||||||
Sbjct: 329 tccgcgccaccgccaccgccaccg 306
>gb|CW473825.1|CW473825 fsbb001f229g04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229g04, DNA
sequence
Length = 569
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 397 tccgcgcctccgccaccgccaccg 420
|||||||| |||||||||||||||
Sbjct: 362 tccgcgccaccgccaccgccaccg 385
>gb|CW483626.1|CW483626 fsbb001f245f18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f245f18, DNA
sequence
Length = 651
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 401 cgcctccgccaccgccaccg 420
||||||||||||||||||||
Sbjct: 326 cgcctccgccaccgccaccg 345
>gb|BE356001.1|BE356001 DG1_121_H09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 516
Score = 40.1 bits (20), Expect = 0.22
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 305 gccgccggggaacccctcggtcctgcagacgttggcgcagttgg 348
|||||||||||| ||||||| ||| ||||||||||||||||
Sbjct: 247 gccgccggggaagttctcggtctggcacacgttggcgcagttgg 204
Score = 40.1 bits (20), Expect = 0.22
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccaccg 414
||||| ||||||||||||| |||| || ||||||||||||||
Sbjct: 181 gaaccggtggctctgcgacaggcagtgcctcgcctccgccaccg 138
>gb|BE360380.1|BE360380 DG1_63_G06.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 553
Score = 40.1 bits (20), Expect = 0.22
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 305 gccgccggggaacccctcggtcctgcagacgttggcgcagttgg 348
|||||||||||| ||||||| ||| ||||||||||||||||
Sbjct: 242 gccgccggggaagttctcggtctggcacacgttggcgcagttgg 199
Score = 40.1 bits (20), Expect = 0.22
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccaccg 414
||||| ||||||||||||| |||| || ||||||||||||||
Sbjct: 176 gaaccggtggctctgcgacaggcagtgcctcgcctccgccaccg 133
>gb|BE360555.1|BE360555 DG1_64_D02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 509
Score = 40.1 bits (20), Expect = 0.22
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 305 gccgccggggaacccctcggtcctgcagacgttggcgcagttgg 348
|||||||||||| ||||||| ||| ||||||||||||||||
Sbjct: 247 gccgccggggaagttctcggtctggcacacgttggcgcagttgg 204
Score = 40.1 bits (20), Expect = 0.22
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccaccg 414
||||| ||||||||||||| |||| || ||||||||||||||
Sbjct: 181 gaaccggtggctctgcgacaggcagtgcctcgcctccgccaccg 138
>gb|BE360587.1|BE360587 DG1_64_D02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 356
Score = 40.1 bits (20), Expect = 0.22
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 305 gccgccggggaacccctcggtcctgcagacgttggcgcagttgg 348
|||||||||||| ||||||| ||| ||||||||||||||||
Sbjct: 247 gccgccggggaagttctcggtctggcacacgttggcgcagttgg 204
Score = 40.1 bits (20), Expect = 0.22
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 371 gaacctgtggctctgcgactggcacgtccgcgcctccgccaccg 414
||||| ||||||||||||| |||| || ||||||||||||||
Sbjct: 181 gaaccggtggctctgcgacaggcagtgcctcgcctccgccaccg 138
>gb|BE600612.1|BE600612 PI1_89_C08.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 292
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 401 cgcctccgccaccgccaccg 420
||||||||||||||||||||
Sbjct: 170 cgcctccgccaccgccaccg 151
>gb|BG322675.1|BG322675 EM1_41_H09.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 524
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 395 cgtccgcgcctccgccaccgccaccggc 422
|||||||||||||||| ||| |||||||
Sbjct: 109 cgtccgcgcctccgccgccggcaccggc 136
>gb|BG556615.1|BG556615 EM1_37_E01.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 447
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 395 cgtccgcgcctccgccaccgccaccggc 422
|||||||||||||||| ||| |||||||
Sbjct: 109 cgtccgcgcctccgccgccggcaccggc 136
>gb|CD205538.1|CD205538 HS1_14_B08.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_14_B08_A012 5', mRNA sequence
Length = 558
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 401 cgcctccgccaccgccaccg 420
||||||||||||||||||||
Sbjct: 108 cgcctccgccaccgccaccg 127
>gb|CD209520.1|CD209520 HS1_43_A05.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_43_A05_A012 3', mRNA sequence
Length = 636
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 401 cgcctccgccaccgccaccg 420
||||||||||||||||||||
Sbjct: 360 cgcctccgccaccgccaccg 341
>gb|CD219757.1|CD219757 CCC1_58_E03.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_58_E03_A007 5', mRNA sequence
Length = 558
Score = 40.1 bits (20), Expect = 0.22
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 397 tccgcgcctccgccaccgccaccg 420
|||||||| |||||||||||||||
Sbjct: 314 tccgcgccaccgccaccgccaccg 291
>gb|CD233817.1|CD233817 SS1_4_E03.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_4_E03_A012 5', mRNA sequence
Length = 647
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 395 cgtccgcgcctccgccaccgccaccggc 422
|||||||||||||||| ||| |||||||
Sbjct: 120 cgtccgcgcctccgccgccggcaccggc 147
>gb|CD430046.1|CD430046 ETH1_13_A01.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_13_A01_A002 5', mRNA sequence
Length = 320
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 395 cgtccgcgcctccgccaccgccaccggc 422
|||||||||||||||| ||| |||||||
Sbjct: 125 cgtccgcgcctccgccgccggcaccggc 152
>gb|CF072484.1|CF072484 FE1_3_H04.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_3_H04_A002 3', mRNA sequence
Length = 659
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 401 cgcctccgccaccgccaccg 420
||||||||||||||||||||
Sbjct: 456 cgcctccgccaccgccaccg 437
>gb|CN133331.1|CN133331 OX1_11_C03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_11_C03_A002 5', mRNA sequence
Length = 675
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 395 cgtccgcgcctccgccaccgccaccggc 422
|||||||||||||||| ||| |||||||
Sbjct: 128 cgtccgcgcctccgccgccggcaccggc 155
>gb|BU672128.1|BU672128 pRC-1198 pRC Sorghum halepense cDNA 5', mRNA sequence
Length = 423
Score = 40.1 bits (20), Expect = 0.22
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 305 gccgccggggaacccctcggtcctgcagacgttggcgcagttgg 348
|||||||||||| ||||||| ||| ||||||||||||||||
Sbjct: 87 gccgccggggaagttctcggtctggcacacgttggcgcagttgg 44
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 281,402
Number of Sequences: 832831
Number of extensions: 281402
Number of successful extensions: 107125
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107022
Number of HSP's gapped (non-prelim): 91
length of query: 580
length of database: 491,359,669
effective HSP length: 19
effective length of query: 561
effective length of database: 475,535,880
effective search space: 266775628680
effective search space used: 266775628680
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)