BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493528.2.1
(627 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX611195.1|CX611195 ANR1_23_E04.b1_A002 Anaerobic roots ... 918 0.0
gb|CW063117.1|CW063117 104_308_10521723_5_30097 Sorghum met... 40 0.24
gb|CW205961.1|CW205961 104_634_11187345_148_36956_039 Sorgh... 40 0.24
gb|CW266683.1|CW266683 104_736_11232562_148_35288_039 Sorgh... 40 0.24
gb|CW283832.1|CW283832 104_760_11409454_116_35484_089 Sorgh... 40 0.24
gb|CW283833.1|CW283833 104_760_11409454_148_35488_089 Sorgh... 40 0.24
gb|CW401690.1|CW401690 fsbb001f092j23k0 Sorghum methylation... 40 0.24
gb|CW409227.1|CW409227 fsbb001f103h05f0 Sorghum methylation... 40 0.24
gb|CW490359.1|CW490359 fsbb001f275m05f0 Sorghum methylation... 40 0.24
gb|BF480764.1|BF480764 FM1_14_F12.g1_A003 Floral-Induced Me... 40 0.24
gb|BM318733.1|BM318733 PI1_14_G06.g1_A002 Pathogen induced ... 40 0.24
gb|CD210442.1|CD210442 HS1_51_G08.b1_A012 Heat-shocked seed... 40 0.24
gb|CF758831.1|CF758831 DSAF1_37_B03.g1_A011 Drought-stresse... 40 0.24
gb|CF759269.1|CF759269 DSAF1_43_A10.b1_A011 Drought-stresse... 40 0.24
gb|CF771806.1|CF771806 DSBF1_24_C12.g1_A010 Drought-stresse... 40 0.24
gb|CN125123.1|CN125123 RHOH1_9_B10.b1_A002 Acid- and alkali... 40 0.24
>gb|CX611195.1|CX611195 ANR1_23_E04.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_23_E04_A002 3', mRNA sequence
Length = 767
Score = 918 bits (463), Expect = 0.0
Identities = 562/595 (94%)
Strand = Plus / Minus
Query: 23 aatcttatttggtcgaggaacgaaaatacagtcatccagctaattgactaacacttgagc 82
|||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 718 aatcttatttggtccaggaacaaaaatacagtcatacagctaattgactaacacttgagc 659
Query: 83 tcagtaaagtattgatctctccaattatatacactggtcttccatcaaaaacagacgaca 142
|||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||| |
Sbjct: 658 tcagtaaagtgttgatctctccaattatatgcactggccttccatcaaaaacagacgata 599
Query: 143 gtgtcgactcacacagcttctttagttcccttgtttttgtaattgctgcctcttgctttg 202
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gtgttgactcacacggcttctttagttcccttgtttttgtaattgctgcctcttgctttg 539
Query: 203 gccatgatgatgacagtgcgttttgcagctccatacgcttaacagataaatcacctaaac 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gccatgatgatgacagtgcgttttgcagctccatacgcttaacagataaatcacctaaac 479
Query: 263 cttcccgtagttttacttcgtgatgcttcttctcttctaagcttgaaactaatctatcca 322
||||||||| ||| || || ||||||||||||||||||||| |||| |||||||| ||||
Sbjct: 478 cttcccgtaatttaacctcatgatgcttcttctcttctaaggttgacactaatctgtcca 419
Query: 323 gaaaccttttagagttaaggatcattataaggtcaagagtcttctgattagttagcaatg 382
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gaaaccttttagaattaaggatcattataaggtcaagagtcttctgattagttagcaatg 359
Query: 383 agattgctgacgagatctctacaagcatgttctccaaactgtcaggagcatgctgctgga 442
|||||||||| || | |||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 358 agattgctgaagaaacctctacaagcatattctccaaactatcaggagcatgctgctgga 299
Query: 443 gaacaaaaggtgagacagcttgcacttgatgctgtagagatgatgtgtctgcattcctca 502
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 298 gaacaaaaggtgagacagcttgcacttgatgctgtagagatgatgtatctgcattcctca 239
Query: 503 tctcccctaagcgttgagtcaaaaatgattttacctcgagtaaatcatccagaatattat 562
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | ||
Sbjct: 238 tctcccctaagcgttgtgtcaaaaatgattttacctcaagtaaatcatccagaatgtcat 179
Query: 563 tcctatattctttctccagcaacaaacttctatcttcagctatcatttgagactg 617
|||||||||| || |||| |||| |||||||||||||| |||||||||||||||
Sbjct: 178 tcctatattccttttccaacaaccgacttctatcttcagttatcatttgagactg 124
>gb|CW063117.1|CW063117 104_308_10521723_5_30097 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10521723, DNA
sequence
Length = 572
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 427 ggagcatgctgctggagaac 446
||||||||||||||||||||
Sbjct: 202 ggagcatgctgctggagaac 183
>gb|CW205961.1|CW205961 104_634_11187345_148_36956_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187345, DNA
sequence
Length = 546
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 427 ggagcatgctgctggagaac 446
||||||||||||||||||||
Sbjct: 319 ggagcatgctgctggagaac 338
>gb|CW266683.1|CW266683 104_736_11232562_148_35288_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232562, DNA
sequence
Length = 637
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 427 ggagcatgctgctggagaac 446
||||||||||||||||||||
Sbjct: 316 ggagcatgctgctggagaac 335
>gb|CW283832.1|CW283832 104_760_11409454_116_35484_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11409454, DNA
sequence
Length = 578
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 427 ggagcatgctgctggagaac 446
||||||||||||||||||||
Sbjct: 437 ggagcatgctgctggagaac 456
>gb|CW283833.1|CW283833 104_760_11409454_148_35488_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11409454, DNA
sequence
Length = 545
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 427 ggagcatgctgctggagaac 446
||||||||||||||||||||
Sbjct: 440 ggagcatgctgctggagaac 421
>gb|CW401690.1|CW401690 fsbb001f092j23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f092j23, DNA
sequence
Length = 277
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 427 ggagcatgctgctggagaac 446
||||||||||||||||||||
Sbjct: 19 ggagcatgctgctggagaac 38
>gb|CW409227.1|CW409227 fsbb001f103h05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f103h05, DNA
sequence
Length = 646
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 427 ggagcatgctgctggagaac 446
||||||||||||||||||||
Sbjct: 341 ggagcatgctgctggagaac 322
>gb|CW490359.1|CW490359 fsbb001f275m05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f275m05, DNA
sequence
Length = 611
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 427 ggagcatgctgctggagaac 446
||||||||||||||||||||
Sbjct: 61 ggagcatgctgctggagaac 80
>gb|BF480764.1|BF480764 FM1_14_F12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 624
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 427 ggagcatgctgctggagaac 446
||||||||||||||||||||
Sbjct: 214 ggagcatgctgctggagaac 233
>gb|BM318733.1|BM318733 PI1_14_G06.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 556
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 427 ggagcatgctgctggagaac 446
||||||||||||||||||||
Sbjct: 56 ggagcatgctgctggagaac 75
>gb|CD210442.1|CD210442 HS1_51_G08.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_51_G08_A012 3', mRNA sequence
Length = 672
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 427 ggagcatgctgctggagaac 446
||||||||||||||||||||
Sbjct: 193 ggagcatgctgctggagaac 212
>gb|CF758831.1|CF758831 DSAF1_37_B03.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_37_B03_A011 3', mRNA sequence
Length = 570
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 427 ggagcatgctgctggagaac 446
||||||||||||||||||||
Sbjct: 79 ggagcatgctgctggagaac 98
>gb|CF759269.1|CF759269 DSAF1_43_A10.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_43_A10_A011 5', mRNA sequence
Length = 450
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 427 ggagcatgctgctggagaac 446
||||||||||||||||||||
Sbjct: 79 ggagcatgctgctggagaac 98
>gb|CF771806.1|CF771806 DSBF1_24_C12.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_24_C12_A010 3', mRNA sequence
Length = 569
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 427 ggagcatgctgctggagaac 446
||||||||||||||||||||
Sbjct: 79 ggagcatgctgctggagaac 98
>gb|CN125123.1|CN125123 RHOH1_9_B10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_9_B10_A002 3', mRNA sequence
Length = 684
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 427 ggagcatgctgctggagaac 446
||||||||||||||||||||
Sbjct: 317 ggagcatgctgctggagaac 336
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 171,667
Number of Sequences: 832831
Number of extensions: 171667
Number of successful extensions: 44746
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44729
Number of HSP's gapped (non-prelim): 17
length of query: 627
length of database: 491,359,669
effective HSP length: 19
effective length of query: 608
effective length of database: 475,535,880
effective search space: 289125815040
effective search space used: 289125815040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)