BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478398.2.5
(1385 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW671986.1|AW671986 LG1_353_B10.b1_A002 Light Grown 1 (L... 860 0.0
gb|CF760790.1|CF760790 DSAF1_66_F10.b1_A011 Drought-stresse... 783 0.0
gb|AW286827.2|AW286827 LG1_222_A02.b1_A002 Light Grown 1 (L... 765 0.0
gb|CD213655.1|CD213655 HS1_52_H08.b1_A012 Heat-shocked seed... 729 0.0
gb|CN151685.1|CN151685 WOUND1_77_A02.b1_A002 Wounded leaves... 728 0.0
gb|BG104074.1|BG104074 RHIZ2_40_B12.b1_A003 Rhizome2 (RHIZ2... 656 0.0
gb|BG103736.1|BG103736 RHIZ2_40_B12.g1_A003 Rhizome2 (RHIZ2... 488 e-136
gb|CD213675.1|CD213675 HS1_52_H08.g1_A012 Heat-shocked seed... 450 e-124
gb|AW283663.1|AW283663 LG1_222_A03.g1_A002 Light Grown 1 (L... 448 e-124
gb|BE356603.1|BE356603 DG1_126_A12.g1_A002 Dark Grown 1 (DG... 434 e-120
gb|CD229430.1|CD229430 CCC1_15_F09.g1_A007 Callus culture/c... 367 2e-099
gb|CW072101.1|CW072101 104_325_10592075_114_30535 Sorghum m... 238 1e-060
gb|CW182718.1|CW182718 104_598_11164228_148_36665_010 Sorgh... 238 1e-060
gb|CW487763.1|CW487763 fsbb001f253m14f0 Sorghum methylation... 230 3e-058
gb|CL177079.1|CL177079 104_384_10893587_148_31915_035 Sorgh... 182 6e-044
gb|BG159222.1|BG159222 RHIZ2_27_H08.b1_A003 Rhizome2 (RHIZ2... 172 6e-041
gb|CN139065.1|CN139065 OX1_15_F09.g1_A002 Oxidatively-stres... 172 6e-041
gb|BG159117.1|BG159117 RHIZ2_28_B02.b1_A003 Rhizome2 (RHIZ2... 159 8e-037
gb|CL177078.1|CL177078 104_384_10893587_116_31916_035 Sorgh... 133 5e-029
gb|CW072102.1|CW072102 104_325_10592075_116_30539 Sorghum m... 133 5e-029
gb|CW096457.1|CW096457 104_462_11001901_148_34352_061 Sorgh... 133 5e-029
gb|CW182717.1|CW182717 104_598_11164228_116_36666_010 Sorgh... 133 5e-029
gb|CW374702.1|CW374702 fsbb001f051l03f0 Sorghum methylation... 133 5e-029
gb|CW487764.1|CW487764 fsbb001f253m14k0 Sorghum methylation... 133 5e-029
gb|CN151757.1|CN151757 WOUND1_77_A02.g1_A002 Wounded leaves... 133 5e-029
gb|CN126300.1|CN126300 RHOH1_16_G12.b1_A002 Acid- and alkal... 129 7e-028
gb|CW126574.1|CW126574 104_507_11112970_116_34733_041 Sorgh... 127 3e-027
gb|BE356536.1|BE356536 DG1_126_A12.b1_A002 Dark Grown 1 (DG... 125 1e-026
gb|BE593318.1|BE593318 WS1_100_C08.g1_A002 Water-stressed 1... 107 3e-021
gb|CW126575.1|CW126575 104_507_11112970_148_34729_041 Sorgh... 98 3e-018
gb|AW747488.1|AW747488 WS1_68_D08.g1_A002 Water-stressed 1 ... 94 4e-017
gb|CF758320.1|CF758320 DSAF1_30_C09.g1_A011 Drought-stresse... 94 4e-017
gb|BG051449.1|BG051449 FM1_56_F02.g1_A003 Floral-Induced Me... 82 2e-013
gb|CF480847.1|CF480847 POL1_68_G02.b1_A002 Pollen Sorghum b... 80 6e-013
gb|CW279532.1|CW279532 104_754_11407127_148_35437_090 Sorgh... 70 6e-010
gb|BG052677.1|BG052677 RHIZ2_28_B02.g1_A003 Rhizome2 (RHIZ2... 64 4e-008
gb|CN125521.1|CN125521 RHOH1_11_C10.g1_A002 Acid- and alkal... 62 1e-007
gb|CL187978.1|CL187978 104_404_10901272_114_32445_064 Sorgh... 60 6e-007
gb|CL187979.1|CL187979 104_404_10901272_116_32449_064 Sorgh... 60 6e-007
gb|BZ339082.1|BZ339082 ic29f12.g1 WGS-SbicolorF (JM107 adap... 56 9e-006
gb|CL185139.1|CL185139 104_399_10899321_116_32394_047 Sorgh... 56 9e-006
gb|CW209191.1|CW209191 104_639_11189100_116_36988_046 Sorgh... 56 9e-006
gb|CW209192.1|CW209192 104_639_11189100_148_36987_046 Sorgh... 56 9e-006
gb|BG052663.1|BG052663 RHIZ2_27_H08.g1_A003 Rhizome2 (RHIZ2... 56 9e-006
gb|CN138974.1|CN138974 OX1_15_F09.b1_A002 Oxidatively-stres... 56 9e-006
gb|BG051126.1|BG051126 FM1_56_F02.b1_A003 Floral-Induced Me... 54 4e-005
gb|CF480911.1|CF480911 POL1_68_G02.g1_A002 Pollen Sorghum b... 54 4e-005
gb|CW133689.1|CW133689 104_517_11116897_116_34808_005 Sorgh... 48 0.002
>gb|AW671986.1|AW671986 LG1_353_B10.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 566
Score = 860 bits (434), Expect = 0.0
Identities = 527/558 (94%)
Strand = Plus / Plus
Query: 195 ctggaccggaaacggatcagcgacgcgctagacaagcaccttgagaaggcggtcgcatcg 254
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 9 ctggaccggaagcggatcagcgacgcgctagacaagcacctcgagaaggcggtcgcgtcg 68
Query: 255 ccgtccacatcgagggggtcagcgggcggcggcggtgtgcgcgaccaccaccgcctcgtc 314
|||||||| ||||||||||| |||||||||||||| | |||||||||||||||||||||
Sbjct: 69 ccgtccacgtcgagggggtcggcgggcggcggcggcgggcgcgaccaccaccgcctcgtt 128
Query: 315 gtgccgtcctccgtgtcgtccatccccaagggccgctgctccgaaggggagtctgattct 374
|||||||||||||| ||| |||||| |||||||| |||||||||||||||||||||||||
Sbjct: 129 gtgccgtcctccgtctcgaccatcctcaagggccactgctccgaaggggagtctgattct 188
Query: 375 gatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtggatttcatgg 434
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct: 189 gatagtgaagcatcagatgttagcggctctgacggagaagacacctcatggatttcatgg 248
Query: 435 tattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaagac 494
|| |||||| | || |||||||||||||||||||||||||| ||||| || |||||||||
Sbjct: 249 tactgcaaccttagggggaatgagttcttctgtgaagtcgacgatgattatattcaagac 308
Query: 495 gacttcaacctttgtggcctcagcagccaagttccttattatgattatgctctcgatctc 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gacttcaacctttgtggcctcagcagccaagttccttattatgattatgctctcgatctc 368
Query: 555 attttagatattgaatcatctcatggtgatatgttcactgaggaacaaaatgagctcgga 614
||||||||||| || ||||||||||||||||||||||| |||||||| |||||||| | |
Sbjct: 369 attttagatatcgagtcatctcatggtgatatgttcaccgaggaacagaatgagcttgta 428
Query: 615 gaatcagctgcagagatgctttatgggctgatccatgcacgatacattctgaccagtaaa 674
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 429 gaatcagctgcagagatgctttatgggctgatccatgcacgatacattcttaccagtaaa 488
Query: 675 ggactggctgcaatgctggagaagtataagaactatgactttgggcggtgcccgcgtgtt 734
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 489 ggactggctgcaatgctggagaagtataagaactatgactttgggcggtgcccacgtgtt 548
Query: 735 tactgctgtggtcaacca 752
|||||||| |||||||||
Sbjct: 549 tactgctgcggtcaacca 566
>gb|CF760790.1|CF760790 DSAF1_66_F10.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_66_F10_A011 5', mRNA sequence
Length = 502
Score = 783 bits (395), Expect = 0.0
Identities = 470/495 (94%)
Strand = Plus / Plus
Query: 293 gcgcgaccaccaccgcctcgtcgtgccgtcctccgtgtcgtccatccccaagggccgctg 352
||||||||||||||||||||| |||||||||||||| ||| |||||| |||||||| |||
Sbjct: 8 gcgcgaccaccaccgcctcgttgtgccgtcctccgtctcgaccatcctcaagggccactg 67
Query: 353 ctccgaaggggagtctgattctgatagtgaagcatcagatgttagtggctctgatggaga 412
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 68 ctccgaaggggagtctgattctgatagtgaagcatcagatgttagcggctctgacggaga 127
Query: 413 agacacctcgtggatttcatggtattgcaacttaagagggaatgagttcttctgtgaagt 472
||||||||| |||||||||||||| |||||| | || |||||||||||||||||||||||
Sbjct: 128 agacacctcatggatttcatggtactgcaaccttagggggaatgagttcttctgtgaagt 187
Query: 473 cgatgatgactacattcaagacgacttcaacctttgtggcctcagcagccaagttcctta 532
||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cgacgatgattatattcaagacgacttcaacctttgtggcctcagcagccaagttcctta 247
Query: 533 ttatgattatgctctcgatctcattttagatattgaatcatctcatggtgatatgttcac 592
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 248 ttatgattatgctctcgatctcattttagatatcgagtcatctcatggtgatatgttcac 307
Query: 593 tgaggaacaaaatgagctcggagaatcagctgcagagatgctttatgggctgatccatgc 652
|||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cgaggaacagaatgagcttgtagaatcagctgcagagatgctttatgggctgatccatgc 367
Query: 653 acgatacattctgaccagtaaaggactggctgcaatgctggagaagtataagaactatga 712
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 acgatacattcttaccagtaaaggactggctgcaatgctggagaagtataagaactatga 427
Query: 713 ctttgggcggtgcccgcgtgtttactgctgtggtcaaccatgcctgccagttggacaatc 772
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 428 ctttgggcggtgcccacgtgtttactgctgcggtcaaccatgcctgccagttggacaatc 487
Query: 773 agacatccatcgatc 787
||| |||||||||||
Sbjct: 488 agatatccatcgatc 502
>gb|AW286827.2|AW286827 LG1_222_A02.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 501
Score = 765 bits (386), Expect = 0.0
Identities = 472/501 (94%)
Strand = Plus / Plus
Query: 218 cgcgctagacaagcaccttgagaaggcggtcgcatcgccgtccacatcgagggggtcagc 277
|||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||
Sbjct: 1 cgcgctagacaagcacctcgagaaggcggtcgcgtcgccgtccacgtcgagggggtcggc 60
Query: 278 gggcggcggcggtgtgcgcgaccaccaccgcctcgtcgtgccgtcctccgtgtcgtccat 337
|||||||||||| | ||||||||||||||||||||| |||||||||||||| ||| ||||
Sbjct: 61 gggcggcggcggcgggcgcgaccaccaccgcctcgttgtgccgtcctccgtctcgaccat 120
Query: 338 ccccaagggccgctgctccgaaggggagtctgattctgatagtgaagcatcagatgttag 397
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cctcaagggccactgctccgaaggggagtctgattctgatagtgaagcatcagatgttag 180
Query: 398 tggctctgatggagaagacacctcgtggatttcatggtattgcaacttaagagggaatga 457
|||||||| |||||||||||||| |||||||||||||| |||||| | || ||||||||
Sbjct: 181 cggctctgacggagaagacacctcatggatttcatggtactgcaaccttagggggaatga 240
Query: 458 gttcttctgtgaagtcgatgatgactacattcaagacgacttcaacctttgtggcctcag 517
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 241 gttcttctgtgaagtcgacgatgattatattcaagacgacttcaacctttgtggcctcag 300
Query: 518 cagccaagttccttattatgattatgctctcgatctcattttagatattgaatcatctca 577
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 301 cagccaagttccttattatgattatgctctcgatctcattttagatatcgagtcatctca 360
Query: 578 tggtgatatgttcactgaggaacaaaatgagctcggagaatcagctgcagagatgcttta 637
||||||||||||||| |||||||| |||||||| | ||||||||||||||||||||||||
Sbjct: 361 tggtgatatgttcaccgaggaacagaatgagcttgtagaatcagctgcagagatgcttta 420
Query: 638 tgggctgatccatgcacgatacattctgaccagtaaaggactggctgcaatgctggagaa 697
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 421 tgggctgatccatgcacgatacattcttaccagtaaaggactggctgcaatgctggagaa 480
Query: 698 gtataagaactatgactttgg 718
||||||||||||||||| |||
Sbjct: 481 gtataagaactatgactntgg 501
>gb|CD213655.1|CD213655 HS1_52_H08.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_52_H08_A012 3', mRNA sequence
Length = 695
Score = 729 bits (368), Expect = 0.0
Identities = 405/416 (97%), Gaps = 1/416 (0%)
Strand = Plus / Plus
Query: 594 gaggaacaaaatgagctcggagaatcagctgcagagatgctttatgggctgatccatgca 653
|||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaggaacagaatgagcttgtagaatcagctgcagagatgctttatgggctgatccatgca 60
Query: 654 cgatacattctgaccagtaaaggactggctgcaatgctggagaagtataagaactatgac 713
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgatacattcttaccagtaaaggactggctgcaatgctggagaagtataagaactatgac 120
Query: 714 tttgggcggtgcccgcgtgtttactgctgtggtcaaccatgcctgccagttggacaatca 773
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 121 tttgggcggtgcccacgtgtttactgctgcggtcaaccatgcctgccagttggacaatca 180
Query: 774 gacatccatcgatctagtaccgtgaagatatactgccccaagtgtgaagacatctactac 833
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gatatccatcgatctagtaccgtgaagatatactgccccaagtgtgaagacatctactac 240
Query: 834 cc-acggtccaagtaccaaggcaacatcgacggcgcatactttgggacaacgttccctca 892
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccnacggtccaagtaccaaggcaacatcgacggcgcatactttgggacaacgttccctca 300
Query: 893 tctgttcctgatgacatacgagcacctcaagccacagaagctctcgcagcgctatgttcc 952
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 301 tctgttcctgatgacatacgagcacctcaagccacagaagccctcgcagcgctatgttcc 360
Query: 953 tcgtgtctttggcttcaagctccacaagccatgaacctcatgtatttgtcttttaa 1008
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 361 tcgtgtctttggcttcaagctccacaagccatgagcctcatgtatttggcttttaa 416
Score = 208 bits (105), Expect = 1e-051
Identities = 165/182 (90%), Gaps = 6/182 (3%)
Strand = Plus / Plus
Query: 1052 tccttgaagacttgcatataagagcgccattggcaggtcagtggattggtaaaattctat 1111
|||||||||||| |||||||||| ||||||||||| |||| |||||||| |||||||||
Sbjct: 481 tccttgaagacta-catataagagtgccattggcagatcagcggattggtgaaattctat 539
Query: 1112 catgctgcagcgtgcttgtaccttagctggctggca--cctatccaacatttgaatgtag 1169
|||||||||||| || |||| ||||||||||||||| | |||||| |||||||||||||
Sbjct: 540 catgctgcagcgcgcatgtaacttagctggctggcaagcgtatccagcatttgaatgtag 599
Query: 1170 ctctaaggatatcaa---tgttgtaacctaactgctattgttctttgattagtaaaccag 1226
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 600 ctctaaggatatcaatgttgttgtaacctaactgcaattgttctttgattagtaaaccag 659
Query: 1227 ga 1228
||
Sbjct: 660 ga 661
>gb|CN151685.1|CN151685 WOUND1_77_A02.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_77_A02_A002 3', mRNA sequence
Length = 728
Score = 728 bits (367), Expect = 0.0
Identities = 388/395 (98%)
Strand = Plus / Plus
Query: 614 agaatcagctgcagagatgctttatgggctgatccatgcacgatacattctgaccagtaa 673
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2 agaatcagctgcagagatgctttatgggctgatccatgcacgatacattcttaccagtaa 61
Query: 674 aggactggctgcaatgctggagaagtataagaactatgactttgggcggtgcccgcgtgt 733
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 62 aggactggctgcaatgctggagaagtataagaactatgactttgggcggtgcccacgtgt 121
Query: 734 ttactgctgtggtcaaccatgcctgccagttggacaatcagacatccatcgatctagtac 793
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 122 ttactgctgcggtcaaccatgcctgccagttggacaatcagatatccatcgatctagtac 181
Query: 794 cgtgaagatatactgccccaagtgtgaagacatctactacccacggtccaagtaccaagg 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 cgtgaagatatactgccccaagtgtgaagacatctactacccacggtccaagtaccaagg 241
Query: 854 caacatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacatacga 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 caacatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacatacga 301
Query: 914 gcacctcaagccacagaagctctcgcagcgctatgttcctcgtgtctttggcttcaagct 973
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gcacctcaagccacagaagccctcgcagcgctatgttcctcgtgtctttggcttcaagct 361
Query: 974 ccacaagccatgaacctcatgtatttgtcttttaa 1008
||||||||||||| ||||||||||||| |||||||
Sbjct: 362 ccacaagccatgagcctcatgtatttggcttttaa 396
Score = 220 bits (111), Expect = 3e-055
Identities = 204/233 (87%), Gaps = 9/233 (3%)
Strand = Plus / Plus
Query: 1052 tccttgaagacttgcatataagagcgccattggcaggtcagtggattggtaaaattctat 1111
|||||||||||| |||||||||| ||||||||||| |||| ||||||| |||||||||
Sbjct: 459 tccttgaagacta-catataagagtgccattggcagatcagcagattggtgaaattctat 517
Query: 1112 catgctgcagcgtgcttgtaccttagctggctggca--cctatccaacatttgaatgtag 1169
|||||||||||| || |||| ||||||||||||||| | |||||| |||||||||||||
Sbjct: 518 catgctgcagcgcgcatgtaacttagctggctggcaagcgtatccagcatttgaatgtag 577
Query: 1170 ctctaaggatatcaa---tgttgtaacctaactgctattgttctttgattagtaaaccag 1226
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 578 ctctaaggatatcaatgttgttgtaacctaactgcaattgttctttgattagtaaagcag 637
Query: 1227 gagnnnnnnntacaatgtagaatatggcaattatttatggctttgcagaaaat 1279
|| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 638 ga---ccccctacaatgtagaatatgggcattatttatggctttgcagaaaat 687
>gb|BG104074.1|BG104074 RHIZ2_40_B12.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 435
Score = 656 bits (331), Expect = 0.0
Identities = 403/427 (94%)
Strand = Plus / Plus
Query: 322 cctccgtgtcgtccatccccaagggccgctgctccgaaggggagtctgattctgatagtg 381
||||||| ||| |||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 9 cctccgtctcgaccatcctcaagggccactgctccgaaggggagtctgattctgatagtg 68
Query: 382 aagcatcagatgttagtggctctgatggagaagacacctcgtggatttcatggtattgca 441
|||||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||
Sbjct: 69 aagcatcagatgttagcggctctgacggagaagacacctcatggatttcatggtactgca 128
Query: 442 acttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaagacgacttca 501
|| | || ||||| |||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct: 129 accttagggggaacgagttcttctgtgaagtcgacgatgattatattcaagacgacttca 188
Query: 502 acctttgtggcctcagcagccaagttccttattatgattatgctctcgatctcattttag 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 acctttgtggcctcagcagccaagttccttattatgattatgctctcgatctcattttag 248
Query: 562 atattgaatcatctcatggtgatatgttcactgaggaacaaaatgagctcggagaatcag 621
|||| || ||||||||||||||||||||||| |||||||| |||||||| | ||||||||
Sbjct: 249 atatcgagtcatctcatggtgatatgttcaccgaggaacagaatgagcttgtagaatcag 308
Query: 622 ctgcagagatgctttatgggctgatccatgcacgatacattctgaccagtaaaggactgg 681
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 309 ctgcagagatgctttatgggctgatccatgcacgatacattcttaccagtaaaggactgg 368
Query: 682 ctgcaatgctggagaagtataagaactatgactttgggcggtgcccgcgtgtttactgct 741
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 369 ctgcaatgctggagaagtataagaactatgactttgggcggtgcccacgtgtttactgct 428
Query: 742 gtggtca 748
| |||||
Sbjct: 429 gcggtca 435
>gb|BG103736.1|BG103736 RHIZ2_40_B12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 628
Score = 488 bits (246), Expect = e-136
Identities = 278/288 (96%), Gaps = 3/288 (1%)
Strand = Plus / Plus
Query: 721 ggtgcccgcgtgtttactgctgtggtcaaccatgcctgccagttggacaatcagacatcc 780
||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 1 ggtgcccacgtgtttactgctgcggtcaaccatgcctgccagttggacaatcagatatcc 60
Query: 781 atcgatctagtaccgtgaagatatactgccccaagtgtgaagacatctactacccacggt 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atcgatctagtaccgtgaagatatactgccccaagtgtgaagacatctactacccacggt 120
Query: 841 ccaagtaccaaggcaacatcgacggcgcatactttgggacaacgttccctcatctgttcc 900
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 121 ccaagtaccaag---acatcgacggcgcatactttgggacaacgttccctcatctgtttc 177
Query: 901 tgatgacatacgagcacctcaagccacagaagctctcgcagcgctatgttcctcgtgtct 960
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 178 tgatgacatacgagcacctcaagccacagaagccctcgcagcgctatgttcctcgtgtct 237
Query: 961 ttggcttcaagctccacaagccatgaacctcatgtatttgtcttttaa 1008
|||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 238 ttggcttcaagctccacaagccatgagcctcatgtatttggcttttaa 285
Score = 220 bits (111), Expect = 3e-055
Identities = 204/233 (87%), Gaps = 9/233 (3%)
Strand = Plus / Plus
Query: 1052 tccttgaagacttgcatataagagcgccattggcaggtcagtggattggtaaaattctat 1111
|||||||||||| |||||||||| ||||||||||| |||| ||||||| |||||||||
Sbjct: 348 tccttgaagacta-catataagagtgccattggcagatcagcagattggtgaaattctat 406
Query: 1112 catgctgcagcgtgcttgtaccttagctggctggca--cctatccaacatttgaatgtag 1169
|||||||||||| || |||| ||||||||||||||| | |||||| |||||||||||||
Sbjct: 407 catgctgcagcgcgcatgtaacttagctggctggcaagcgtatccagcatttgaatgtag 466
Query: 1170 ctctaaggatatcaa---tgttgtaacctaactgctattgttctttgattagtaaaccag 1226
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 467 ctctaaggatatcaatgttgttgtaacctaactgcaattgttctttgattagtaaagcag 526
Query: 1227 gagnnnnnnntacaatgtagaatatggcaattatttatggctttgcagaaaat 1279
|| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 527 ga---ccccctacaatgtagaatatgggcattatttatggctttgcagaaaat 576
>gb|CD213675.1|CD213675 HS1_52_H08.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_52_H08_A012 5', mRNA sequence
Length = 571
Score = 450 bits (227), Expect = e-124
Identities = 299/323 (92%)
Strand = Plus / Plus
Query: 190 ctggtctggaccggaaacggatcagcgacgcgctagacaagcaccttgagaaggcggtcg 249
|||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 249 ctgggctggaccggaagcggatcagcgacgcgctagacaagcacctcgagaaggcggtcg 308
Query: 250 catcgccgtccacatcgagggggtcagcgggcggcggcggtgtgcgcgaccaccaccgcc 309
| ||||||||||| ||||||||||| |||||||||||||| | |||||||||||||||||
Sbjct: 309 cgtcgccgtccacgtcgagggggtcggcgggcggcggcggcgggcgcgaccaccaccgcc 368
Query: 310 tcgtcgtgccgtcctccgtgtcgtccatccccaagggccgctgctccgaaggggagtctg 369
|||| |||||||||||||| ||| |||||| |||||||| ||||||||||||||||||||
Sbjct: 369 tcgttgtgccgtcctccgtctcgaccatcctcaagggccactgctccgaaggggagtctg 428
Query: 370 attctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtggattt 429
|||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct: 429 attctgatagtgaagcatcagatgttagcggctctgacggagaagacacctcatggattt 488
Query: 430 catggtattgcaacttaagagggaatgagttcttctgtgaagtcgatgatgactacattc 489
||||||| |||||| | || ||||| |||||||||||||||||||| ||||| || ||||
Sbjct: 489 catggtactgcaaccttagggggaacgagttcttctgtgaagtcgacgatgattatattc 548
Query: 490 aagacgacttcaacctttgtggc 512
|||||||||||||||||||||||
Sbjct: 549 aagacgacttcaacctttgtggc 571
Score = 137 bits (69), Expect = 3e-030
Identities = 107/119 (89%), Gaps = 3/119 (2%)
Strand = Plus / Plus
Query: 8 ctttcctccaccgcgggcgcaaaccctaaccctacagccgctcgccccgcggcgcctgcc 67
|||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 64 ctttcctccaccccgggcgcaaaccctaaccctaccgtcgctcgccccgcggcgcctgcg 123
Query: 68 aatggcgccccccgtgtgagtgtgtgtgagaggcagag---acctagaggccgctaccc 123
|||||||| ||||||||||||||||| |||||| ||| |||||||| |||||||||
Sbjct: 124 aatggcgcgccccgtgtgagtgtgtgagagagggggaggagacctagagcccgctaccc 182
>gb|AW283663.1|AW283663 LG1_222_A03.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 559
Score = 448 bits (226), Expect = e-124
Identities = 238/242 (98%)
Strand = Plus / Plus
Query: 767 acaatcagacatccatcgatctagtaccgtgaagatatactgccccaagtgtgaagacat 826
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acaatcagatatccatcgatctagtaccgtgaagatatactgccccaagtgtgaagacat 60
Query: 827 ctactacccacggtccaagtaccaaggcaacatcgacggcgcatactttgggacaacgtt 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctactacccacggtccaagtaccaaggcaacatcgacggcgcatactttgggacaacgtt 120
Query: 887 ccctcatctgttcctgatgacatacgagcacctcaagccacagaagctctcgcagcgcta 946
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 121 ccctcatctgttcctgatgacatacgagcacctcaagccacagaagccctcgcagcgcta 180
Query: 947 tgttcctcgtgtctttggcttcaagctccacaagccatgaacctcatgtatttgtctttt 1006
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 181 tgttcctcgtgtctttggcttcaagctccacaagccatgagcctcatgtatttggctttt 240
Query: 1007 aa 1008
||
Sbjct: 241 aa 242
Score = 220 bits (111), Expect = 3e-055
Identities = 204/233 (87%), Gaps = 9/233 (3%)
Strand = Plus / Plus
Query: 1052 tccttgaagacttgcatataagagcgccattggcaggtcagtggattggtaaaattctat 1111
|||||||||||| |||||||||| ||||||||||| |||| ||||||| |||||||||
Sbjct: 305 tccttgaagacta-catataagagtgccattggcagatcagcagattggtgaaattctat 363
Query: 1112 catgctgcagcgtgcttgtaccttagctggctggca--cctatccaacatttgaatgtag 1169
|||||||||||| || |||| ||||||||||||||| | |||||| |||||||||||||
Sbjct: 364 catgctgcagcgcgcatgtaacttagctggctggcaagcgtatccagcatttgaatgtag 423
Query: 1170 ctctaaggatatcaa---tgttgtaacctaactgctattgttctttgattagtaaaccag 1226
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 424 ctctaaggatatcaatgttgttgtaacctaactgcaattgttctttgattagtaaagcag 483
Query: 1227 gagnnnnnnntacaatgtagaatatggcaattatttatggctttgcagaaaat 1279
|| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 484 ga---ccccctacaatgtagaatatgggcattatttatggctttgcagaaaat 533
>gb|BE356603.1|BE356603 DG1_126_A12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 393
Score = 434 bits (219), Expect = e-120
Identities = 237/243 (97%)
Strand = Plus / Plus
Query: 766 gacaatcagacatccatcgatctagtaccgtgaagatatactgccccaagtgtgaagaca 825
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 gacaatcagatatccatcgatctagtaccgtgaagatatcctgccccaagtgtgaagaca 60
Query: 826 tctactacccacggtccaagtaccaaggcaacatcgacggcgcatactttgggacaacgt 885
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 tctactacccacggtccaagtaccaaggctacatcgacggcgcatactttgggacaacgt 120
Query: 886 tccctcatctgttcctgatgacatacgagcacctcaagccacagaagctctcgcagcgct 945
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 121 tccctcatctgttcctgatgacatacgagcacctcaagccacagaagccctcgcagcgct 180
Query: 946 atgttcctcgtgtctttggcttcaagctccacaagccatgaacctcatgtatttgtcttt 1005
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 181 atgttcctcgtgtctttggcttcaagctccacaagccatgagcctcatgtatttggcttt 240
Query: 1006 taa 1008
|||
Sbjct: 241 taa 243
Score = 75.8 bits (38), Expect = 1e-011
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1052 tccttgaagacttgcatataagagcgccattggcaggtcagtggattggtaaaattctat 1111
|||||||||||| |||||||||| |||||||||| |||| ||||||| |||||||||
Sbjct: 306 tccttgaagacta-catataagagtcccattggcagatcagcagattggtgaaattctat 364
Query: 1112 catgctgcagcgtgcttgtaccttag 1137
|||||||||||| || |||| |||||
Sbjct: 365 catgctgcagcgcgcatgtaacttag 390
>gb|CD229430.1|CD229430 CCC1_15_F09.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_15_F09_A007 5', mRNA sequence
Length = 538
Score = 367 bits (185), Expect = 2e-099
Identities = 268/293 (91%), Gaps = 2/293 (0%)
Strand = Plus / Plus
Query: 190 ctggtctggaccggaaacggatcagcgacgcgctagacaagcaccttgagaaggcggtcg 249
|||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 239 ctgggctggaccggaagcggatcagcgacgcgctagacaagcacctcgagaaggcggacg 298
Query: 250 catcgccgtccacatcgagggggtcagcgggcggcggcggtgtgcgcgaccaccaccgcc 309
| ||||||||||| ||||||||||| |||||||||||||| | | |||||||||||||||
Sbjct: 299 cgtcgccgtccacgtcgagggggtcggcgggcggcggcggcgggagcgaccaccaccgcc 358
Query: 310 tcgtcgtgccgtcctccgtgtcgtccatccccaagggccgctgctccgaaggggagtctg 369
||| |||||||||||||| ||| |||||| |||||| | ||||||||||||||||||||
Sbjct: 359 tcgatgtgccgtcctccgtctcgaccatcctcaagggtcactgctccgaaggggagtctg 418
Query: 370 attctgatagtgaagcatcagatgttagtggctctgatggagaagacacctcgtggattt 429
|||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct: 419 attctgatagtgaagcatcagatgttagcggctctgacggagaagacacctcatggattt 478
Query: 430 catggtattg-caacttaagagggaatgagttcttctgtgaagtcgatgatga 481
||||||| || || |||||| |||||||||||||||||||||||||| |||||
Sbjct: 479 catggtactgccaccttaag-gggaatgagttcttctgtgaagtcgacgatga 530
Score = 133 bits (67), Expect = 5e-029
Identities = 105/117 (89%), Gaps = 3/117 (2%)
Strand = Plus / Plus
Query: 10 ttcctccaccgcgggcgcaaaccctaaccctacagccgctcgccccgcggcgcctgccaa 69
|||||||||| |||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct: 58 ttcctccaccccgggcgcaaaccctaaccctaccgtcgctcgccccgcggcgcctgcgaa 117
Query: 70 tggcgccccccgtgtgagtgtgtgtgagaggcagag---acctagaggccgctaccc 123
|||||| ||||||||||||||||| |||||| ||| |||||||| |||||||||
Sbjct: 118 tggcgcgccccgtgtgagtgtgtgagagagggggaggagacctagagcccgctaccc 174
>gb|CW072101.1|CW072101 104_325_10592075_114_30535 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592075, DNA
sequence
Length = 545
Score = 238 bits (120), Expect = 1e-060
Identities = 159/172 (92%)
Strand = Plus / Minus
Query: 190 ctggtctggaccggaaacggatcagcgacgcgctagacaagcaccttgagaaggcggtcg 249
|||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 335 ctgggctggaccggaagcggatcagcgacgcgctagacaagcacctcgagaaggcggtcg 276
Query: 250 catcgccgtccacatcgagggggtcagcgggcggcggcggtgtgcgcgaccaccaccgcc 309
| ||||||||||| ||||||||||| |||||||||||||| | |||||||||||||||||
Sbjct: 275 cgtcgccgtccacgtcgagggggtcggcgggcggcggcggcgggcgcgaccaccaccgcc 216
Query: 310 tcgtcgtgccgtcctccgtgtcgtccatccccaagggccgctgctccgaagg 361
|||| |||||||||||||| ||| |||||| |||||||| ||||||||||||
Sbjct: 215 tcgttgtgccgtcctccgtctcgaccatcctcaagggccactgctccgaagg 164
Score = 133 bits (67), Expect = 5e-029
Identities = 105/117 (89%), Gaps = 3/117 (2%)
Strand = Plus / Minus
Query: 10 ttcctccaccgcgggcgcaaaccctaaccctacagccgctcgccccgcggcgcctgccaa 69
|||||||||| |||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct: 516 ttcctccaccccgggcgcaaaccctaaccctaccgtcgctcgccccgcggcgcctgcgaa 457
Query: 70 tggcgccccccgtgtgagtgtgtgtgagaggcagag---acctagaggccgctaccc 123
|||||| ||||||||||||||||| |||||| ||| |||||||| |||||||||
Sbjct: 456 tggcgcgccccgtgtgagtgtgtgagagagggggaggagacctagagcccgctaccc 400
>gb|CW182718.1|CW182718 104_598_11164228_148_36665_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164228, DNA
sequence
Length = 725
Score = 238 bits (120), Expect = 1e-060
Identities = 159/172 (92%)
Strand = Plus / Minus
Query: 190 ctggtctggaccggaaacggatcagcgacgcgctagacaagcaccttgagaaggcggtcg 249
|||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 330 ctgggctggaccggaagcggatcagcgacgcgctagacaagcacctcgagaaggcggtcg 271
Query: 250 catcgccgtccacatcgagggggtcagcgggcggcggcggtgtgcgcgaccaccaccgcc 309
| ||||||||||| ||||||||||| |||||||||||||| | |||||||||||||||||
Sbjct: 270 cgtcgccgtccacgtcgagggggtcggcgggcggcggcggcgggcgcgaccaccaccgcc 211
Query: 310 tcgtcgtgccgtcctccgtgtcgtccatccccaagggccgctgctccgaagg 361
|||| |||||||||||||| ||| |||||| |||||||| ||||||||||||
Sbjct: 210 tcgttgtgccgtcctccgtctcgaccatcctcaagggccactgctccgaagg 159
Score = 133 bits (67), Expect = 5e-029
Identities = 105/117 (89%), Gaps = 3/117 (2%)
Strand = Plus / Minus
Query: 10 ttcctccaccgcgggcgcaaaccctaaccctacagccgctcgccccgcggcgcctgccaa 69
|||||||||| |||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct: 511 ttcctccaccccgggcgcaaaccctaaccctaccgtcgctcgccccgcggcgcctgcgaa 452
Query: 70 tggcgccccccgtgtgagtgtgtgtgagaggcagag---acctagaggccgctaccc 123
|||||| ||||||||||||||||| |||||| ||| |||||||| |||||||||
Sbjct: 451 tggcgcgccccgtgtgagtgtgtgagagagggggaggagacctagagcccgctaccc 395
>gb|CW487763.1|CW487763 fsbb001f253m14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f253m14, DNA
sequence
Length = 559
Score = 230 bits (116), Expect = 3e-058
Identities = 158/172 (91%)
Strand = Plus / Minus
Query: 190 ctggtctggaccggaaacggatcagcgacgcgctagacaagcaccttgagaaggcggtcg 249
|||| ||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 349 ctgggctggaccggaagcggatcagcgacgcgctagccaagcacctcgagaaggcggtcg 290
Query: 250 catcgccgtccacatcgagggggtcagcgggcggcggcggtgtgcgcgaccaccaccgcc 309
| ||||||||||| ||||||||||| |||||||||||||| | |||||||||||||||||
Sbjct: 289 cgtcgccgtccacgtcgagggggtcggcgggcggcggcggcgggcgcgaccaccaccgcc 230
Query: 310 tcgtcgtgccgtcctccgtgtcgtccatccccaagggccgctgctccgaagg 361
|||| |||||||||||||| ||| |||||| |||||||| ||||||||||||
Sbjct: 229 tcgttgtgccgtcctccgtctcgaccatcctcaagggccactgctccgaagg 178
Score = 127 bits (64), Expect = 3e-027
Identities = 84/91 (92%)
Strand = Plus / Minus
Query: 10 ttcctccaccgcgggcgcaaaccctaaccctacagccgctcgccccgcggcgcctgccaa 69
|||||||||| |||||||||||||||||||||| | |||||||||||||||||||| ||
Sbjct: 530 ttcctccaccccgggcgcaaaccctaaccctaccgtcgctcgccccgcggcgcctgngaa 471
Query: 70 tggcgccccccgtgtgagtgtgtgtgagagg 100
|||||| ||||||||||||||||| ||||||
Sbjct: 470 tggcgcgccccgtgtgagtgtgtgagagagg 440
>gb|CL177079.1|CL177079 104_384_10893587_148_31915_035 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893587, DNA
sequence
Length = 477
Score = 182 bits (92), Expect = 6e-044
Identities = 152/172 (88%)
Strand = Plus / Minus
Query: 190 ctggtctggaccggaaacggatcagcgacgcgctagacaagcaccttgagaaggcggtcg 249
|||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 336 ctgggctggaccggaagcggatcagcgacgcgctagacaagcacctcgagaaggcggtgg 277
Query: 250 catcgccgtccacatcgagggggtcagcgggcggcggcggtgtgcgcgaccaccaccgcc 309
| || |||||||| ||||||||||| |||||||||||||| | |||||||||||||||||
Sbjct: 276 cgtctccgtccacgtcgagggggtctgcgggcggcggcggcgggcgcgaccaccaccgcc 217
Query: 310 tcgtcgtgccgtcctccgtgtcgtccatccccaagggccgctgctccgaagg 361
|||| |||||||| || || ||| ||||| |||||| | |||||| |||||
Sbjct: 216 tcgttgtgccgtcttctgtctcgaccatcttcaaggggcactgctctgaagg 165
Score = 58.0 bits (29), Expect = 2e-006
Identities = 64/75 (85%), Gaps = 3/75 (4%)
Strand = Plus / Minus
Query: 52 ccccgcggcgcctgccaatggcgccccccgtgtgagtgtgtgtgagaggcagag---acc 108
|||||||||||||| |||||||| |||| |||||||||||| |||||| ||| |||
Sbjct: 475 ccccgcggcgcctgtgaatggcgcgccccctgtgagtgtgtgagagagggggaggagacc 416
Query: 109 tagaggccgctaccc 123
||||| |||||||||
Sbjct: 415 tagagcccgctaccc 401
>gb|BG159222.1|BG159222 RHIZ2_27_H08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 544
Score = 172 bits (87), Expect = 6e-041
Identities = 267/327 (81%)
Strand = Plus / Plus
Query: 381 gaagcatcagatgttagtggctctgatggagaagacacctcgtggatttcatggtattgc 440
|||| ||||||||| ||||| |||||||| ||||| || |||||||||||||||| ||
Sbjct: 122 gaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgt 181
Query: 441 aacttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaagacgacttc 500
| ||||| || |||||||| |||||||| || ||||| || ||||| ||||| || |||
Sbjct: 182 agtttaaggggtaatgagtttttctgtgaggttgatgacgagtacatacaagatgatttc 241
Query: 501 aacctttgtggcctcagcagccaagttccttattatgattatgctctcgatctcatttta 560
||||| ||||| || |||| ||||||||| ||||| | ||||| || ||||| || |||
Sbjct: 242 aacctgtgtgggctaagcaaccaagttccatattactactatgcgcttgatctgatatta 301
Query: 561 gatattgaatcatctcatggtgatatgttcactgaggaacaaaatgagctcggagaatca 620
||| ||||||| || ||||||||||||||||| || || |||||||| ||| ||||||
Sbjct: 302 gatgttgaatcttcccatggtgatatgttcacagaagagcaaaatgaactcattgaatca 361
Query: 621 gctgcagagatgctttatgggctgatccatgcacgatacattctgaccagtaaaggactg 680
||||| |||||||| ||||| |||| |||| || || ||| | || |||||||| ||
Sbjct: 362 gctgctgagatgctctatggattgattcatgttcggtatattattacaagtaaagggttg 421
Query: 681 gctgcaatgctggagaagtataagaac 707
||||||||||||| ||||| ||||||
Sbjct: 422 tctgcaatgctggataagtacaagaac 448
>gb|CN139065.1|CN139065 OX1_15_F09.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_15_F09_A002 5', mRNA sequence
Length = 766
Score = 172 bits (87), Expect = 6e-041
Identities = 267/327 (81%)
Strand = Plus / Plus
Query: 381 gaagcatcagatgttagtggctctgatggagaagacacctcgtggatttcatggtattgc 440
|||| ||||||||| ||||| |||||||| ||||| || |||||||||||||||| ||
Sbjct: 426 gaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgt 485
Query: 441 aacttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaagacgacttc 500
| ||||| || |||||||| |||||||| || ||||| || ||||| ||||| || |||
Sbjct: 486 agtttaaggggtaatgagtttttctgtgaggttgatgacgagtacatacaagatgatttc 545
Query: 501 aacctttgtggcctcagcagccaagttccttattatgattatgctctcgatctcatttta 560
||||| ||||| || |||| ||||||||| ||||| || ||||| || ||||| || |||
Sbjct: 546 aacctgtgtgggctaagcaaccaagttccatattacgactatgcgcttgatctgatatta 605
Query: 561 gatattgaatcatctcatggtgatatgttcactgaggaacaaaatgagctcggagaatca 620
||| ||||||| || ||||||||||||||||| || || |||||||| ||| ||||||
Sbjct: 606 gatgttgaatcttcccatggtgatatgttcacagaagagcaaaatgaactcattgaatca 665
Query: 621 gctgcagagatgctttatgggctgatccatgcacgatacattctgaccagtaaaggactg 680
||||| |||||||| ||||| |||| |||| || || ||| | || |||||||| ||
Sbjct: 666 gctgctgagatgctctatggattgattcatgttcggtatattattacaagtaaagggttg 725
Query: 681 gctgcaatgctggagaagtataagaac 707
| ||||||||||| ||||| ||||||
Sbjct: 726 tcggcaatgctggataagtacaagaac 752
>gb|BG159117.1|BG159117 RHIZ2_28_B02.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 417
Score = 159 bits (80), Expect = 8e-037
Identities = 215/260 (82%)
Strand = Plus / Plus
Query: 381 gaagcatcagatgttagtggctctgatggagaagacacctcgtggatttcatggtattgc 440
|||| ||||||||| ||||| |||||||| ||||| || |||||||||||||||| ||
Sbjct: 122 gaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgt 181
Query: 441 aacttaagagggaatgagttcttctgtgaagtcgatgatgactacattcaagacgacttc 500
| ||||| || |||||||| |||||||| || ||||| || ||||| ||||| || |||
Sbjct: 182 agtttaaggggtaatgagtttttctgtgaggttgatgacgagtacatacaagatgatttc 241
Query: 501 aacctttgtggcctcagcagccaagttccttattatgattatgctctcgatctcatttta 560
||||| ||||| || |||| ||||||||| ||||| | ||||| || ||||| || |||
Sbjct: 242 aacctgtgtgggctaagcaaccaagttccatattactactatgcgcttgatctgatatta 301
Query: 561 gatattgaatcatctcatggtgatatgttcactgaggaacaaaatgagctcggagaatca 620
||| ||||||| || ||||||||||||||||| || || |||||||| ||| ||||||
Sbjct: 302 gatgttgaatcttcccatggtgatatgttcacagaagagcaaaatgaactcattgaatca 361
Query: 621 gctgcagagatgctttatgg 640
||||| |||||||| |||||
Sbjct: 362 gctgctgagatgctctatgg 381
>gb|CL177078.1|CL177078 104_384_10893587_116_31916_035 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893587, DNA
sequence
Length = 562
Score = 133 bits (67), Expect = 5e-029
Identities = 105/117 (89%), Gaps = 3/117 (2%)
Strand = Plus / Plus
Query: 10 ttcctccaccgcgggcgcaaaccctaaccctacagccgctcgccccgcggcgcctgccaa 69
|||||||||| |||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct: 338 ttcctccaccccgggcgcaaaccctaaccctaccgtcgctcgccccgcggcgcctgcgaa 397
Query: 70 tggcgccccccgtgtgagtgtgtgtgagaggcagag---acctagaggccgctaccc 123
|||||| ||||||||||||||||| |||||| ||| |||||||| |||||||||
Sbjct: 398 tggcgcgccccgtgtgagtgtgtgagagagggggaggagacctagagcccgctaccc 454
Score = 71.9 bits (36), Expect = 2e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 190 ctggtctggaccggaaacggatcagcgacgcgctagacaagcac 233
|||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 519 ctgggctggaccggaagcggatcagcgacgcgctagacaagcac 562
>gb|CW072102.1|CW072102 104_325_10592075_116_30539 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592075, DNA
sequence
Length = 543
Score = 133 bits (67), Expect = 5e-029
Identities = 85/91 (93%)
Strand = Plus / Plus
Query: 10 ttcctccaccgcgggcgcaaaccctaaccctacagccgctcgccccgcggcgcctgccaa 69
|||||||||| |||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct: 447 ttcctccaccccgggcgcaaaccctaaccctaccgtcgctcgccccgcggcgcctgcgaa 506
Query: 70 tggcgccccccgtgtgagtgtgtgtgagagg 100
|||||| ||||||||||||||||| ||||||
Sbjct: 507 tggcgcgccccgtgtgagtgtgtgagagagg 537
>gb|CW096457.1|CW096457 104_462_11001901_148_34352_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001901, DNA
sequence
Length = 609
Score = 133 bits (67), Expect = 5e-029
Identities = 85/91 (93%)
Strand = Plus / Minus
Query: 10 ttcctccaccgcgggcgcaaaccctaaccctacagccgctcgccccgcggcgcctgccaa 69
|||||||||| |||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct: 99 ttcctccaccccgggcgcaaaccctaaccctaccgtcgctcgccccgcggcgcctgcgaa 40
Query: 70 tggcgccccccgtgtgagtgtgtgtgagagg 100
|||||| ||||||||||||||||| ||||||
Sbjct: 39 tggcgcgccccgtgtgagtgtgtgagagagg 9
>gb|CW182717.1|CW182717 104_598_11164228_116_36666_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164228, DNA
sequence
Length = 586
Score = 133 bits (67), Expect = 5e-029
Identities = 105/117 (89%), Gaps = 3/117 (2%)
Strand = Plus / Plus
Query: 10 ttcctccaccgcgggcgcaaaccctaaccctacagccgctcgccccgcggcgcctgccaa 69
|||||||||| |||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct: 443 ttcctccaccccgggcgcaaaccctaaccctaccgtcgctcgccccgcggcgcctgcgaa 502
Query: 70 tggcgccccccgtgtgagtgtgtgtgagaggcagag---acctagaggccgctaccc 123
|||||| ||||||||||||||||| |||||| ||| |||||||| |||||||||
Sbjct: 503 tggcgcgccccgtgtgagtgtgtgagagagggggaggagacctagagcccgctaccc 559
>gb|CW374702.1|CW374702 fsbb001f051l03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f051l03, DNA
sequence
Length = 661
Score = 133 bits (67), Expect = 5e-029
Identities = 105/117 (89%), Gaps = 3/117 (2%)
Strand = Plus / Minus
Query: 10 ttcctccaccgcgggcgcaaaccctaaccctacagccgctcgccccgcggcgcctgccaa 69
|||||||||| |||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct: 212 ttcctccaccccgggcgcaaaccctaaccctaccgtcgctcgccccgcggcgcctgcgaa 153
Query: 70 tggcgccccccgtgtgagtgtgtgtgagaggcagag---acctagaggccgctaccc 123
|||||| ||||||||||||||||| |||||| ||| |||||||| |||||||||
Sbjct: 152 tggcgcgccccgtgtgagtgtgtgagagagggggaggagacctagagcccgctaccc 96
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 190 ctggtctggaccggaaacggatcagcgacgcg 221
|||| ||||||||||| |||||||||||||||
Sbjct: 32 ctgggctggaccggaagcggatcagcgacgcg 1
>gb|CW487764.1|CW487764 fsbb001f253m14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f253m14, DNA
sequence
Length = 615
Score = 133 bits (67), Expect = 5e-029
Identities = 105/117 (89%), Gaps = 3/117 (2%)
Strand = Plus / Plus
Query: 10 ttcctccaccgcgggcgcaaaccctaaccctacagccgctcgccccgcggcgcctgccaa 69
|||||||||| |||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct: 477 ttcctccaccccgggcgcaaaccctaaccctaccgtcgctcgccccgcggcgcctgcgaa 536
Query: 70 tggcgccccccgtgtgagtgtgtgtgagaggcagag---acctagaggccgctaccc 123
|||||| ||||||||||||||||| |||||| ||| |||||||| |||||||||
Sbjct: 537 tggcgcgccccgtgtgagtgtgtgagagagggggaggagacctagagcccgctaccc 593
>gb|CN151757.1|CN151757 WOUND1_77_A02.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_77_A02_A002 5', mRNA sequence
Length = 155
Score = 133 bits (67), Expect = 5e-029
Identities = 85/91 (93%)
Strand = Plus / Plus
Query: 10 ttcctccaccgcgggcgcaaaccctaaccctacagccgctcgccccgcggcgcctgccaa 69
|||||||||| |||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct: 54 ttcctccaccccgggcgcaaaccctaaccctaccgtcgctcgccccgcggcgcctgcgaa 113
Query: 70 tggcgccccccgtgtgagtgtgtgtgagagg 100
|||||| ||||||||||||||||| ||||||
Sbjct: 114 tggcgcgccccgtgtgagtgtgtgagagagg 144
>gb|CN126300.1|CN126300 RHOH1_16_G12.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_16_G12_A002 3', mRNA sequence
Length = 725
Score = 129 bits (65), Expect = 7e-028
Identities = 299/377 (79%)
Strand = Plus / Plus
Query: 531 tattatgattatgctctcgatctcattttagatattgaatcatctcatggtgatatgttc 590
|||||||||||||| || |||||||| ||||| ||||| || ||| |||||||| |||||
Sbjct: 39 tattatgattatgcacttgatctcatcttagacattgagtcttctaatggtgatgtgttc 98
Query: 591 actgaggaacaaaatgagctcggagaatcagctgcagagatgctttatgggctgatccat 650
|||||||| ||||| || | || || ||||||||||||| ||||| | || ||
Sbjct: 99 actgaggagcaaaacgaattaatcgagtcgtctgcagagatgctgtatggattaattcac 158
Query: 651 gcacgatacattctgaccagtaaaggactggctgcaatgctggagaagtataagaactat 710
|| |||||||| | ||||| || || || ||||||||| ||||||||| |||||||||
Sbjct: 159 gcccgatacatcttaaccagcaagggtctagctgcaatgttggagaagttcaagaactat 218
Query: 711 gactttgggcggtgcccgcgtgtttactgctgtggtcaaccatgcctgccagttggacaa 770
|||||||| | ||||| | || ||||||||||| || || || || |||| || |||
Sbjct: 219 gactttggtagatgccccagagtgtactgctgtggccagccctgtcttccagcagggcaa 278
Query: 771 tcagacatccatcgatctagtaccgtgaagatatactgccccaagtgtgaagacatctac 830
||||| || | | |||| || || ||||||||||| || ||||| ||||| || | |
Sbjct: 279 tcagatattcctagatcgagcacagtgaagatatattgtcccaaatgtgaggaacttaat 338
Query: 831 tacccacggtccaagtaccaaggcaacatcgacggcgcatactttgggacaacgttccct 890
|| ||| | |||||||||||||||||||| || || ||||||||||||| || |||||
Sbjct: 339 tatccaagatccaagtaccaaggcaacattgatggatcatactttgggacgacattcccc 398
Query: 891 catctgttcctgatgac 907
||||| |||||||||||
Sbjct: 399 catcttttcctgatgac 415
>gb|CW126574.1|CW126574 104_507_11112970_116_34733_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11112970, DNA
sequence
Length = 492
Score = 127 bits (64), Expect = 3e-027
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 10 ttcctccaccgcgggcgcaaaccctaaccctacagccgctcgccccgcggcgcctgccaa 69
|||||||||| |||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct: 398 ttcctccaccccgggcgcaaaccctaaccctaccgtcgctcgccccgcggcgcctgcgaa 457
Query: 70 tggcgccccccgtgtgagtgtgtg 93
|||||| |||||||||||||||||
Sbjct: 458 tggcgcgccccgtgtgagtgtgtg 481
>gb|BE356536.1|BE356536 DG1_126_A12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 149
Score = 125 bits (63), Expect = 1e-026
Identities = 84/91 (92%)
Strand = Plus / Plus
Query: 10 ttcctccaccgcgggcgcaaaccctaaccctacagccgctcgccccgcggcgcctgccaa 69
|||||||||| |||||||||||||||||||||| | |||||||||||| |||||||| ||
Sbjct: 23 ttcctccaccccgggcgcaaaccctaaccctaccggcgctcgccccgcagcgcctgcgaa 82
Query: 70 tggcgccccccgtgtgagtgtgtgtgagagg 100
|||||| ||||||||||||||||| ||||||
Sbjct: 83 tggcgcgccccgtgtgagtgtgtgagagagg 113
>gb|BE593318.1|BE593318 WS1_100_C08.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 580
Score = 107 bits (54), Expect = 3e-021
Identities = 228/286 (79%)
Strand = Plus / Plus
Query: 622 ctgcagagatgctttatgggctgatccatgcacgatacattctgaccagtaaaggactgg 681
||||||||||||| ||||| | || || ||||||||||| | ||||| || || || |
Sbjct: 34 ctgcagagatgctgtatggattaattcacgcacgatacatcttaaccagcaagggtctag 93
Query: 682 ctgcaatgctggagaagtataagaactatgactttgggcggtgcccgcgtgtttactgct 741
|||||||| ||||||||| ||||||||||||||||| | ||||| | || |||||||
Sbjct: 94 ctgcaatgttggagaagttcaagaactatgactttggtagatgccccagagtgtactgct 153
Query: 742 gtggtcaaccatgcctgccagttggacaatcagacatccatcgatctagtaccgtgaaga 801
|||| || || || || |||| || |||||||| || | | |||| || || |||||||
Sbjct: 154 gtggccagccctgtcttccagcagggcaatcagatattcctagatcgagcacagtgaaga 213
Query: 802 tatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggcaacatcg 861
|||| || ||||| ||||| || | | || ||| | |||||||||||||||||||| |
Sbjct: 214 tatattgtcccaaatgtgaggaacttaattatccaagatccaagtaccaaggcaacattg 273
Query: 862 acggcgcatactttgggacaacgttccctcatctgttcctgatgac 907
| || ||||||||||||| || ||||| ||||| |||||||||||
Sbjct: 274 atggatcatactttgggacgacattcccccatcttttcctgatgac 319
>gb|CW126575.1|CW126575 104_507_11112970_148_34729_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11112970, DNA
sequence
Length = 611
Score = 97.6 bits (49), Expect = 3e-018
Identities = 64/69 (92%)
Strand = Plus / Minus
Query: 293 gcgcgaccaccaccgcctcgtcgtgccgtcctccgtgtcgtccatccccaagggccgctg 352
||||||||||||||||||||| |||||||||||||| ||| |||||| |||||||| |||
Sbjct: 603 gcgcgaccaccaccgcctcgttgtgccgtcctccgtctcgaccatcctcaagggccactg 544
Query: 353 ctccgaagg 361
|||||||||
Sbjct: 543 ctccgaagg 535
>gb|AW747488.1|AW747488 WS1_68_D08.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 539
Score = 93.7 bits (47), Expect = 4e-017
Identities = 182/227 (80%)
Strand = Plus / Plus
Query: 681 gctgcaatgctggagaagtataagaactatgactttgggcggtgcccgcgtgtttactgc 740
||||||||| ||||||||| ||||||||||||||||| | ||||| | || ||||||
Sbjct: 9 gctgcaatgttggagaagttcaagaactatgactttggtagatgccccagagtgtactgc 68
Query: 741 tgtggtcaaccatgcctgccagttggacaatcagacatccatcgatctagtaccgtgaag 800
||||| || || || || |||| || |||||||| || | | |||| || || ||||||
Sbjct: 69 tgtggccagccctgtcttccagcagggcaatcagatattcctagatcgagcacagtgaag 128
Query: 801 atatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggcaacatc 860
||||| || ||||| ||||| || | | || ||| | ||||||||||||||||||||
Sbjct: 129 atatattgtcccaaatgtgaggaacttaattatccaagatccaagtaccaaggcaacatt 188
Query: 861 gacggcgcatactttgggacaacgttccctcatctgttcctgatgac 907
|| || ||||||||||||| || ||||| ||||| |||||||||||
Sbjct: 189 gatggatcatactttgggacgacattcccccatcttttcctgatgac 235
>gb|CF758320.1|CF758320 DSAF1_30_C09.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_30_C09_A011 3', mRNA sequence
Length = 555
Score = 93.7 bits (47), Expect = 4e-017
Identities = 182/227 (80%)
Strand = Plus / Plus
Query: 681 gctgcaatgctggagaagtataagaactatgactttgggcggtgcccgcgtgtttactgc 740
||||||||| ||||||||| ||||||||||||||||| | ||||| | || ||||||
Sbjct: 20 gctgcaatgttggagaagttcaagaactatgactttggtagatgccccagagtgtactgc 79
Query: 741 tgtggtcaaccatgcctgccagttggacaatcagacatccatcgatctagtaccgtgaag 800
||||| || || || || |||| || |||||||| || | | |||| || || ||||||
Sbjct: 80 tgtggccagccctgtcttccagcagggcaatcagatattcctagatcgagcacagtgaag 139
Query: 801 atatactgccccaagtgtgaagacatctactacccacggtccaagtaccaaggcaacatc 860
||||| || ||||| ||||| || | | || ||| | ||||||||||||||||||||
Sbjct: 140 atatattgtcccaaatgtgaggaacttaattatccaagatccaagtaccaaggcaacatt 199
Query: 861 gacggcgcatactttgggacaacgttccctcatctgttcctgatgac 907
|| || ||||||||||||| || ||||| ||||| |||||||||||
Sbjct: 200 gatggatcatactttgggacgacattcccccatcttttcctgatgac 246
>gb|BG051449.1|BG051449 FM1_56_F02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 510
Score = 81.8 bits (41), Expect = 2e-013
Identities = 173/217 (79%)
Strand = Plus / Plus
Query: 691 tggagaagtataagaactatgactttgggcggtgcccgcgtgtttactgctgtggtcaac 750
||||||||| ||||||||||||||||| | ||||| | || ||||||||||| || |
Sbjct: 4 tggagaagttcaagaactatgactttggtagatgccccagagtgtactgctgtggccagc 63
Query: 751 catgcctgccagttggacaatcagacatccatcgatctagtaccgtgaagatatactgcc 810
| || || |||| || |||||||| || | | |||| || || ||||||||||| || |
Sbjct: 64 cctgtcttccagcagggcaatcagatattcgtagatcgagcacagtgaagatatattgtc 123
Query: 811 ccaagtgtgaagacatctactacccacggtccaagtaccaaggcaacatcgacggcgcat 870
|||| ||||| || | | || ||| | |||||||||||||||||||| || || |||
Sbjct: 124 ccaaatgtgaggaacttaattatccaagatccaagtaccaaggcaacattgatggatcat 183
Query: 871 actttgggacaacgttccctcatctgttcctgatgac 907
|||||||||| || ||||| ||||| |||||||||||
Sbjct: 184 actttgggacgacattcccccatcttttcctgatgac 220
>gb|CF480847.1|CF480847 POL1_68_G02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_68_G02_A002 3', mRNA sequence
Length = 742
Score = 79.8 bits (40), Expect = 6e-013
Identities = 155/192 (80%), Gaps = 1/192 (0%)
Strand = Plus / Plus
Query: 516 agcagccaagttccttattatgattatgctctcgatctcattttagatattgaatcatct 575
|||| ||||||||| ||||| || ||||| || ||||| || |||||| ||||||| ||
Sbjct: 2 agcaaccaagttccatattacgactatgcgcttgatctgatattagatgttgaatcttcc 61
Query: 576 catggtgatatgttcactgaggaacaaaatgagctcggagaatcagctgcagagatgctt 635
||||||||||| ||||| || || |||||||| ||| ||||||||||| ||||||||
Sbjct: 62 catggtgatat-ttcacagaagagcaaaatgaactcattgaatcagctgctgagatgctc 120
Query: 636 tatgggctgatccatgcacgatacattctgaccagtaaaggactggctgcaatgctggag 695
||||| |||| |||| || || ||| | || |||||||| || | |||||||||||
Sbjct: 121 tatggattgattcatgttcggtatattattacaagtaaagggttgtcggcaatgctggat 180
Query: 696 aagtataagaac 707
||||| ||||||
Sbjct: 181 aagtacaagaac 192
Score = 42.1 bits (21), Expect = 0.14
Identities = 49/57 (85%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 856 acatcgacggcgcatactttgggacaacgttccc-tcatctgttcctgatgacatac 911
|||||||||| | |||||||||||||| ||||| || |||||||||||||||||
Sbjct: 348 acatcgacgggacttactttgggacaacattcccaccacttgttcctgatgacatac 404
>gb|CW279532.1|CW279532 104_754_11407127_148_35437_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407127, DNA
sequence
Length = 645
Score = 69.9 bits (35), Expect = 6e-010
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 1237 tacaatgtagaatatggcaattatttatggctttgcagaaaat 1279
||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 15 tacaatgtagaatatgggcattatttatggctttgcagaaaat 57
>gb|BG052677.1|BG052677 RHIZ2_28_B02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 437
Score = 63.9 bits (32), Expect = 4e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 856 acatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacatac 911
|||||||||| | |||||||||||||| ||||| ||| |||||||||||||||||
Sbjct: 43 acatcgacgggacttactttgggacaacattcccccatttgttcctgatgacatac 98
>gb|CN125521.1|CN125521 RHOH1_11_C10.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_11_C10_A002 5', mRNA sequence
Length = 317
Score = 61.9 bits (31), Expect = 1e-007
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 381 gaagcatcagatgttagtggctctgatggagaagacacctcgtggatttcatggt 435
|||| ||||||||| ||||| |||||||| ||||| || ||||||||||||||||
Sbjct: 238 gaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggt 292
>gb|CL187978.1|CL187978 104_404_10901272_114_32445_064 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901272, DNA
sequence
Length = 758
Score = 60.0 bits (30), Expect = 6e-007
Identities = 153/194 (78%)
Strand = Plus / Plus
Query: 390 gatgttagtggctctgatggagaagacacctcgtggatttcatggtattgcaacttaaga 449
||||| ||||| ||||| || || ||||| || ||||||||||||| || | || ||
Sbjct: 191 gatgtcagtggttctgagggggaggacacatcctggatttcatggttctgtacattgcga 250
Query: 450 gggaatgagttcttctgtgaagtcgatgatgactacattcaagacgacttcaacctttgt 509
|| ||||| ||||| ||||| ||||||| |||||||| || || || || ||||| |||
Sbjct: 251 ggcaatgaattcttttgtgagatcgatgaagactacatacaggatgattttaacctgtgt 310
Query: 510 ggcctcagcagccaagttccttattatgattatgctctcgatctcattttagatattgaa 569
|| || || | || || || |||||||||||||| || |||||||| ||||| |||||
Sbjct: 311 ggtctgagtaatcaggtcccatattatgattatgcacttgatctcatcttagacattgag 370
Query: 570 tcatctcatggtga 583
|| ||| |||||||
Sbjct: 371 tcttctaatggtga 384
>gb|CL187979.1|CL187979 104_404_10901272_116_32449_064 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901272, DNA
sequence
Length = 705
Score = 60.0 bits (30), Expect = 6e-007
Identities = 153/194 (78%)
Strand = Plus / Minus
Query: 390 gatgttagtggctctgatggagaagacacctcgtggatttcatggtattgcaacttaaga 449
||||| ||||| ||||| || || ||||| || ||||||||||||| || | || ||
Sbjct: 685 gatgtcagtggttctgagggggaggacacatcctggatttcatggttctgtacattgcga 626
Query: 450 gggaatgagttcttctgtgaagtcgatgatgactacattcaagacgacttcaacctttgt 509
|| ||||| ||||| ||||| ||||||| |||||||| || || || || ||||| |||
Sbjct: 625 ggcaatgaattcttttgtgagatcgatgaagactacatacaggatgattttaacctgtgt 566
Query: 510 ggcctcagcagccaagttccttattatgattatgctctcgatctcattttagatattgaa 569
|| || || | || || || |||||||||||||| || |||||||| ||||| |||||
Sbjct: 565 ggtctgagtaatcaggtcccatattatgattatgcacttgatctcatcttagacattgag 506
Query: 570 tcatctcatggtga 583
|| ||| |||||||
Sbjct: 505 tcttctaatggtga 492
>gb|BZ339082.1|BZ339082 ic29f12.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic29f12 5', DNA sequence
Length = 677
Score = 56.0 bits (28), Expect = 9e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 856 acatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacatac 911
|||||||||| | |||||||||||||| ||||| || |||||||||||||||||
Sbjct: 345 acatcgacgggacttactttgggacaacattcccccacttgttcctgatgacatac 290
>gb|CL185139.1|CL185139 104_399_10899321_116_32394_047 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899321, DNA
sequence
Length = 674
Score = 56.0 bits (28), Expect = 9e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 856 acatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacatac 911
|||||||||| | |||||||||||||| ||||| || |||||||||||||||||
Sbjct: 40 acatcgacgggacttactttgggacaacattcccccacttgttcctgatgacatac 95
>gb|CW209191.1|CW209191 104_639_11189100_116_36988_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189100, DNA
sequence
Length = 716
Score = 56.0 bits (28), Expect = 9e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 856 acatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacatac 911
|||||||||| | |||||||||||||| ||||| || |||||||||||||||||
Sbjct: 457 acatcgacgggacttactttgggacaacattcccccacttgttcctgatgacatac 402
>gb|CW209192.1|CW209192 104_639_11189100_148_36987_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189100, DNA
sequence
Length = 698
Score = 56.0 bits (28), Expect = 9e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 856 acatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacatac 911
|||||||||| | |||||||||||||| ||||| || |||||||||||||||||
Sbjct: 300 acatcgacgggacttactttgggacaacattcccccacttgttcctgatgacatac 355
>gb|BG052663.1|BG052663 RHIZ2_27_H08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 507
Score = 56.0 bits (28), Expect = 9e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 856 acatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacatac 911
|||||||||| | |||||||||||||| ||||| ||| ||||| |||||||||||
Sbjct: 104 acatcgacgggacttactttgggacaacattcccccatttgttcttgatgacatac 159
>gb|CN138974.1|CN138974 OX1_15_F09.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_15_F09_A002 3', mRNA sequence
Length = 730
Score = 56.0 bits (28), Expect = 9e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 856 acatcgacggcgcatactttgggacaacgttccctcatctgttcctgatgacatac 911
|||||||||| | |||||||||||||| ||||| || |||||||||||||||||
Sbjct: 198 acatcgacgggacttactttgggacaacattcccccacttgttcctgatgacatac 253
>gb|BG051126.1|BG051126 FM1_56_F02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 482
Score = 54.0 bits (27), Expect = 4e-005
Identities = 141/179 (78%)
Strand = Plus / Plus
Query: 390 gatgttagtggctctgatggagaagacacctcgtggatttcatggtattgcaacttaaga 449
||||| ||||| ||||| || || ||||| || ||||||||||||| || | || ||
Sbjct: 226 gatgtcagtggttctgagggggaggacacatcctggatttcatggttctgtacattgcga 285
Query: 450 gggaatgagttcttctgtgaagtcgatgatgactacattcaagacgacttcaacctttgt 509
|| ||||| ||||| ||||| ||||||| |||||||| || || || || ||||| |||
Sbjct: 286 ggcaatgaattcttttgtgagatcgatgaagactacatacaggatgattttaacctgtgt 345
Query: 510 ggcctcagcagccaagttccttattatgattatgctctcgatctcattttagatattga 568
|| || || | || || || |||||||||||||| || |||||||| ||||| |||||
Sbjct: 346 ggtctgagtaatcacgtcccatattatgattatgcacttgatctcatcttagacattga 404
>gb|CF480911.1|CF480911 POL1_68_G02.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_68_G02_A002 5', mRNA sequence
Length = 542
Score = 54.0 bits (27), Expect = 4e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 381 gaagcatcagatgttagtggctctgatggagaagacacctcgtggatttcatggt 435
|||| |||| |||| ||||| |||||||| ||||| || ||||||||||||||||
Sbjct: 466 gaagaatcacatgtgagtggttctgatggggaagatacttcgtggatttcatggt 520
>gb|CW133689.1|CW133689 104_517_11116897_116_34808_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116897, DNA
sequence
Length = 677
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 868 catactttgggacaacgttccctcatctgttcctgatgac 907
||||||||||||| || ||||| ||||| |||||||||||
Sbjct: 348 catactttgggacgacattcccccatcttttcctgatgac 387
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 402,180
Number of Sequences: 832831
Number of extensions: 402180
Number of successful extensions: 105832
Number of sequences better than 0.5: 48
Number of HSP's better than 0.5 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105687
Number of HSP's gapped (non-prelim): 116
length of query: 1385
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1365
effective length of database: 474,703,049
effective search space: 647969661885
effective search space used: 647969661885
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)