BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478065.2.2
(688 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF071923.1|CF071923 FE1_19_C12.g1_A002 Iron-deficient se... 833 0.0
gb|AW677286.1|AW677286 DG1_7_A08.b1_A002 Dark Grown 1 (DG1)... 537 e-151
gb|AW678365.1|AW678365 WS1_15_G09.b1_A002 Water-stressed 1 ... 537 e-151
gb|CF769491.1|CF769491 DSBF1_2_B06.b1_A010 Drought-stressed... 507 e-142
gb|AW564276.1|AW564276 LG1_289_E04.b1_A002 Light Grown 1 (L... 498 e-139
gb|BE358487.1|BE358487 DG1_30_D05.b1_A002 Dark Grown 1 (DG1... 498 e-139
gb|CF761176.1|CF761176 DSAF1_72_B01.b1_A011 Drought-stresse... 498 e-139
gb|CF758834.1|CF758834 DSAF1_37_B06.g1_A011 Drought-stresse... 482 e-134
gb|AW925141.1|AW925141 WS1_75_H07.b1_A002 Water-stressed 1 ... 478 e-133
gb|AW744948.1|AW744948 LG1_385_B09.b1_A002 Light Grown 1 (L... 474 e-132
gb|AW745001.1|AW745001 LG1_385_B09.g1_A002 Light Grown 1 (L... 474 e-132
gb|AW747718.1|AW747718 WS1_75_H07.g1_A002 Water-stressed 1 ... 460 e-128
gb|CF769577.1|CF769577 DSBF1_2_B06.g1_A010 Drought-stressed... 458 e-127
gb|CF072684.1|CF072684 FE1_25_C08.b1_A002 Iron-deficient se... 432 e-119
gb|CL194203.1|CL194203 104_418_10941467_114_32283_040 Sorgh... 404 e-111
gb|CF758026.1|CF758026 DSAF1_26_D04.g1_A011 Drought-stresse... 400 e-110
gb|CF486826.1|CF486826 POL1_40_B05.b1_A002 Pollen Sorghum b... 391 e-107
gb|CW348914.1|CW348914 fsbb001f009i04k0 Sorghum methylation... 319 2e-085
gb|BE593156.1|BE593156 WS1_98_C01.g1_A002 Water-stressed 1 ... 297 7e-079
gb|CW028426.1|CW028426 104_255_10499086_114_30394 Sorghum m... 295 3e-078
gb|CW360434.1|CW360434 fsbb001f028i09k0 Sorghum methylation... 295 3e-078
gb|CL194204.1|CL194204 104_418_10941467_116_32287_040 Sorgh... 182 3e-044
gb|DN552763.1|DN552763 pSHR-RT-MR-H2_F07_C210 pSHR Sorghum ... 170 1e-040
gb|CL190317.1|CL190317 104_408_10906000_116_32502_058 Sorgh... 167 2e-039
gb|CW028427.1|CW028427 104_255_10499086_116_30393 Sorghum m... 167 2e-039
gb|CW170205.1|CW170205 104_580_11155083_116_36513_008 Sorgh... 167 2e-039
gb|CW192941.1|CW192941 104_615_11179298_148_36771_005 Sorgh... 167 2e-039
gb|CW360433.1|CW360433 fsbb001f028i09f0 Sorghum methylation... 167 2e-039
gb|CW502444.1|CW502444 fsbb001f298m13k0 Sorghum methylation... 167 2e-039
gb|CF761338.1|CF761338 DSAF1_74_A01.b1_A011 Drought-stresse... 163 3e-038
gb|CW330151.1|CW330151 104_827_11480221_116_36011_063 Sorgh... 161 1e-037
gb|CW330152.1|CW330152 104_827_11480221_148_36012_063 Sorgh... 161 1e-037
gb|CW137062.1|CW137062 104_523_11119092_148_34867_044 Sorgh... 159 4e-037
gb|CW186907.1|CW186907 104_605_11166811_148_36718_080 Sorgh... 159 4e-037
gb|CW348913.1|CW348913 fsbb001f009i04f0 Sorghum methylation... 159 4e-037
gb|CW376984.1|CW376984 fsbb001f055b21f0 Sorghum methylation... 159 4e-037
gb|CW137061.1|CW137061 104_523_11119092_116_34871_044 Sorgh... 143 2e-032
gb|CW297816.1|CW297816 104_780_11462242_148_35653_045 Sorgh... 143 2e-032
gb|CW483366.1|CW483366 fsbb001f244p16k0 Sorghum methylation... 139 4e-031
gb|CW170206.1|CW170206 104_580_11155083_148_36514_008 Sorgh... 131 9e-029
gb|CW483365.1|CW483365 fsbb001f244p16f0 Sorghum methylation... 129 4e-028
gb|CL190316.1|CL190316 104_408_10906000_114_32484_058 Sorgh... 92 8e-017
gb|CW397161.1|CW397161 fsbb001f085o22f0 Sorghum methylation... 86 5e-015
gb|CW429421.1|CW429421 fsbb001f142k18k0 Sorghum methylation... 86 5e-015
gb|CF071010.1|CF071010 FE1_15_H05.b1_A002 Iron-deficient se... 84 2e-014
gb|BZ337132.1|BZ337132 ia85e02.b1 WGS-SbicolorF (JM107 adap... 82 8e-014
gb|AW284428.1|AW284428 LG1_289_E04.g1_A002 Light Grown 1 (L... 70 3e-010
gb|BF317674.1|BF317674 OV1_11_G08.g1_A002 Ovary 1 (OV1) Sor... 70 3e-010
gb|BF318078.1|BF318078 OV1_11_G08.b1_A002 Ovary 1 (OV1) Sor... 70 3e-010
gb|CL703679.2|CL703679 SP__Bb0004B09.f SP__Bb Sorghum propi... 58 1e-006
gb|BZ351778.1|BZ351778 hw09e11.g1 WGS-SbicolorF (JM107 adap... 44 0.017
gb|CL169188.1|CL169188 104_367_10812453_116_31787_309 Sorgh... 44 0.017
gb|CW376985.1|CW376985 fsbb001f055b21k0 Sorghum methylation... 44 0.017
gb|CL157649.1|CL157649 104_345_10783750_114_31477_310 Sorgh... 40 0.26
gb|CW048086.1|CW048086 104_286_10513082_115_30215 Sorghum m... 40 0.26
gb|CW241156.1|CW241156 104_700_11218612_116_37546_012 Sorgh... 40 0.26
>gb|CF071923.1|CF071923 FE1_19_C12.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_19_C12_A002 5', mRNA sequence
Length = 594
Score = 833 bits (420), Expect = 0.0
Identities = 515/546 (94%), Gaps = 3/546 (0%)
Strand = Plus / Minus
Query: 143 tgactcagaagatcgtgaagaagcgggtcaagcagttcaagaggccccacctcgaccgct 202
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tgacgcagaagatcgtgaagaagcgggtcaagcagttcaagaggccccacctcgaccgct 529
Query: 203 acaagtgcctcaagccaagctggcgcaggcccaagggtatcgactcccgtgtcaggcgga 262
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 528 acaagtgcctcaagccaagctggcgcaggcccaagggtattgactctcgtgtcaggcgga 469
Query: 263 agttcaagggatgcaccttgatgcctaacattggatatggctctgacaagaagaccaggc 322
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 agttcaaaggatgcaccttgatgcctaacattggatatggctctgacaagaagaccaggc 409
Query: 323 actatcttcccaacaagtttaagaagtttgtcgtgcacaatgtttctgagctggagttgc 382
||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 408 actatctccccaacaagtttaagaagtttgtcgtgcataatgtctctgagctggagttgc 349
Query: 383 ttatgatgcacaacaggacatactgtgctgaaatcgcacacaacgtgtccactaagaagc 442
||||||||||||||||||| |||||||||||||| |||||| | ||||||||||||||||
Sbjct: 348 ttatgatgcacaacaggacctactgtgctgaaattgcacacgatgtgtccactaagaagc 289
Query: 443 gcaaggaaatcgtggagcgagctgctcagcttgacattgtggtcaccaataagcttgccc 502
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 288 gcaaggaaattgtggagcgagctgctcagcttgacattgtggtcaccaacaagcttgccc 229
Query: 503 gtctccgcagccaggaagatgagtaaactgtttctactagcagtagttttggaatggtgt 562
|||| ||||||||||| |||||||||||||||| |||| |||||||||||| |||||
Sbjct: 228 gtcttcgcagccaggaggatgagtaaactgttt---ctagtagtagttttggagtggtgc 172
Query: 563 ggctttagaggacttgctgtgtatgatgattcagttatcatttctgtttgcttcataatt 622
||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||
Sbjct: 171 ggctttagaggacttgctgtgtatgatgaatcagttatcctatctgtttgcttcatggtt 112
Query: 623 ctgagtactgtgaacccacttgctatcagtagcaacttaactgtggcactgttattatct 682
||||| | |||||||||||||||||||||||||||| ||||||||||| | |||||||||
Sbjct: 111 ctgagcattgtgaacccacttgctatcagtagcaacctaactgtggcaatattattatct 52
Query: 683 tttacc 688
||||||
Sbjct: 51 tttacc 46
>gb|AW677286.1|AW677286 DG1_7_A08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 439
Score = 537 bits (271), Expect = e-151
Identities = 364/395 (92%)
Strand = Plus / Plus
Query: 124 aagatggcggtgccgctgttgactcagaagatcgtgaagaagcgggtcaagcagttcaag 183
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 13 aagatggcggtgccgctgctgacgcagaagatcgtgaagaagcgggtcaagcagttcaag 72
Query: 184 aggccccacctcgaccgctacaagtgcctcaagccaagctggcgcaggcccaagggtatc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 aggccccacctcgaccgctacaagtgcctcaagccaagctggcgcaggcccaagggtatc 132
Query: 244 gactcccgtgtcaggcggaagttcaagggatgcaccttgatgcctaacattggatatggc 303
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 133 gactcccgcgtcaggcggaagttcaagggatgcaccttgatgcccaacattggatatggc 192
Query: 304 tctgacaagaagaccaggcactatcttcccaacaagtttaagaagtttgtcgtgcacaat 363
||||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||
Sbjct: 193 tctgacaagaagaccaggcactaccttcccaacaagttcaagaagtttgttgttcacaat 252
Query: 364 gtttctgagctggagttgcttatgatgcacaacaggacatactgtgctgaaatcgcacac 423
|| |||||||||||| |||| ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 253 gtctctgagctggagctgctgatgatgcacaacaggacttactgcgctgagattgcccac 312
Query: 424 aacgtgtccactaagaagcgcaaggaaatcgtggagcgagctgctcagcttgacattgtg 483
||||||||||| ||||||||||| || || ||||| ||||| || || |||||||||
Sbjct: 313 aacgtgtccacccgcaagcgcaaggagattgttgagcgtgctgcgcaactggacattgtg 372
Query: 484 gtcaccaataagcttgcccgtctccgcagccagga 518
|||||||| ||||||||| | || |||||||||||
Sbjct: 373 gtcaccaacaagcttgccaggcttcgcagccagga 407
>gb|AW678365.1|AW678365 WS1_15_G09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 542
Score = 537 bits (271), Expect = e-151
Identities = 364/395 (92%)
Strand = Plus / Plus
Query: 124 aagatggcggtgccgctgttgactcagaagatcgtgaagaagcgggtcaagcagttcaag 183
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 60 aagatggcggtgccgctgctgacgcagaagatcgtgaagaagcgggtcaagcagttcaag 119
Query: 184 aggccccacctcgaccgctacaagtgcctcaagccaagctggcgcaggcccaagggtatc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 aggccccacctcgaccgctacaagtgcctcaagccaagctggcgcaggcccaagggtatc 179
Query: 244 gactcccgtgtcaggcggaagttcaagggatgcaccttgatgcctaacattggatatggc 303
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 180 gactcccgcgtcaggcggaagttcaagggatgcaccttgatgcccaacattggatatggc 239
Query: 304 tctgacaagaagaccaggcactatcttcccaacaagtttaagaagtttgtcgtgcacaat 363
||||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||
Sbjct: 240 tctgacaagaagaccaggcactaccttcccaacaagttcaagaagtttgttgttcacaat 299
Query: 364 gtttctgagctggagttgcttatgatgcacaacaggacatactgtgctgaaatcgcacac 423
|| |||||||||||| |||| ||||||||||||||||| ||||| ||||| || || |||
Sbjct: 300 gtctctgagctggagctgctgatgatgcacaacaggacttactgcgctgagattgcccac 359
Query: 424 aacgtgtccactaagaagcgcaaggaaatcgtggagcgagctgctcagcttgacattgtg 483
||||||||||| ||||||||||| || || ||||| ||||| || || |||||||||
Sbjct: 360 aacgtgtccacccgcaagcgcaaggagattgttgagcgtgctgcgcaactggacattgtg 419
Query: 484 gtcaccaataagcttgcccgtctccgcagccagga 518
|||||||| ||||||||| | || |||||||||||
Sbjct: 420 gtcaccaacaagcttgccaggcttcgcagccagga 454
>gb|CF769491.1|CF769491 DSBF1_2_B06.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_2_B06_A010 5', mRNA sequence
Length = 515
Score = 507 bits (256), Expect = e-142
Identities = 346/376 (92%)
Strand = Plus / Plus
Query: 143 tgactcagaagatcgtgaagaagcgggtcaagcagttcaagaggccccacctcgaccgct 202
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgacgcagaagatcgtgaagaagcgggtcaagcagttcaagaggccccacctcgaccgct 61
Query: 203 acaagtgcctcaagccaagctggcgcaggcccaagggtatcgactcccgtgtcaggcgga 262
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 62 acaagtgcctcaagccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcgga 121
Query: 263 agttcaagggatgcaccttgatgcctaacattggatatggctctgacaagaagaccaggc 322
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 122 agttcaagggatgcaccttgatgcccaacattggatatggctctgacaagaagaccaggc 181
Query: 323 actatcttcccaacaagtttaagaagtttgtcgtgcacaatgtttctgagctggagttgc 382
|||| |||||||||||||| ||||||||||| || |||||||| |||||||||||| |||
Sbjct: 182 actaccttcccaacaagttcaagaagtttgttgttcacaatgtctctgagctggagctgc 241
Query: 383 ttatgatgcacaacaggacatactgtgctgaaatcgcacacaacgtgtccactaagaagc 442
| ||||||||||||||||| ||||| ||||| || || |||||||||||||| ||||
Sbjct: 242 tgatgatgcacaacaggacttactgcgctgagattgcccacaacgtgtccacccgcaagc 301
Query: 443 gcaaggaaatcgtggagcgagctgctcagcttgacattgtggtcaccaataagcttgccc 502
||||||| || || ||||| ||||| || || ||||||||||||||||| |||||||||
Sbjct: 302 gcaaggagattgttgagcgtgctgcgcaactggacattgtggtcaccaacaagcttgcca 361
Query: 503 gtctccgcagccagga 518
| || |||||||||||
Sbjct: 362 ggcttcgcagccagga 377
>gb|AW564276.1|AW564276 LG1_289_E04.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 632
Score = 498 bits (251), Expect = e-139
Identities = 365/403 (90%)
Strand = Plus / Plus
Query: 125 agatggcggtgccgctgttgactcagaagatcgtgaagaagcgggtcaagcagttcaaga 184
||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 49 agatggcggtgcctctgctgacgaagaagatcgtgaagaagcgggtcaagcagttcaaga 108
Query: 185 ggccccacctcgaccgctacaagtgcctcaagccaagctggcgcaggcccaagggtatcg 244
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct: 109 ggccccacctcgaccgctacaagtgccttaagccaagctggcgcaggccaaagggtattg 168
Query: 245 actcccgtgtcaggcggaagttcaagggatgcaccttgatgcctaacattggatatggct 304
|||||||||||||| |||||||||||||||||||||||||||| |||||||| || ||||
Sbjct: 169 actcccgtgtcaggaggaagttcaagggatgcaccttgatgcccaacattggttacggct 228
Query: 305 ctgacaagaagaccaggcactatcttcccaacaagtttaagaagtttgtcgtgcacaatg 364
|||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct: 229 ctgacaagtcaaccaggcactaccttcccaacaagttcaagaagtttgtggtgcacaatg 288
Query: 365 tttctgagctggagttgcttatgatgcacaacaggacatactgtgctgaaatcgcacaca 424
| ||||||||||||||||| ||||||||||||||||| |||||||| || ||||| ||||
Sbjct: 289 tctctgagctggagttgctcatgatgcacaacaggacctactgtgccgagatcgcccaca 348
Query: 425 acgtgtccactaagaagcgcaaggaaatcgtggagcgagctgctcagcttgacattgtgg 484
|||| ||||| |||||||||||||| || || ||||| || | ||||||||||||||||
Sbjct: 349 acgtctccaccaagaagcgcaaggagattgttgagcgcgcctcacagcttgacattgtgg 408
Query: 485 tcaccaataagcttgcccgtctccgcagccaggaagatgagta 527
||||||| ||||| || | |||||||||||||| ||||||||
Sbjct: 409 tcaccaacaagctcgctaggctccgcagccaggaggatgagta 451
>gb|BE358487.1|BE358487 DG1_30_D05.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 526
Score = 498 bits (251), Expect = e-139
Identities = 365/403 (90%)
Strand = Plus / Plus
Query: 125 agatggcggtgccgctgttgactcagaagatcgtgaagaagcgggtcaagcagttcaaga 184
||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 63 agatggcggtgcctctgctgacgaagaagatcgtgaagaagcgggtcaagcagttcaaga 122
Query: 185 ggccccacctcgaccgctacaagtgcctcaagccaagctggcgcaggcccaagggtatcg 244
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct: 123 ggccccacctcgaccgctacaagtgccttaagccaagctggcgcaggccaaagggtattg 182
Query: 245 actcccgtgtcaggcggaagttcaagggatgcaccttgatgcctaacattggatatggct 304
|||||||||||||| |||||||||||||||||||||||||||| |||||||| || ||||
Sbjct: 183 actcccgtgtcaggaggaagttcaagggatgcaccttgatgcccaacattggttacggct 242
Query: 305 ctgacaagaagaccaggcactatcttcccaacaagtttaagaagtttgtcgtgcacaatg 364
|||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct: 243 ctgacaagtcaaccaggcactaccttcccaacaagttcaagaagtttgtggtgcacaatg 302
Query: 365 tttctgagctggagttgcttatgatgcacaacaggacatactgtgctgaaatcgcacaca 424
| ||||||||||||||||| ||||||||||||||||| |||||||| || ||||| ||||
Sbjct: 303 tctctgagctggagttgctcatgatgcacaacaggacctactgtgccgagatcgcccaca 362
Query: 425 acgtgtccactaagaagcgcaaggaaatcgtggagcgagctgctcagcttgacattgtgg 484
|||| ||||| |||||||||||||| || || ||||| || | ||||||||||||||||
Sbjct: 363 acgtctccaccaagaagcgcaaggagattgttgagcgcgcctcacagcttgacattgtgg 422
Query: 485 tcaccaataagcttgcccgtctccgcagccaggaagatgagta 527
||||||| ||||| || | |||||||||||||| ||||||||
Sbjct: 423 tcaccaacaagctcgctaggctccgcagccaggaggatgagta 465
>gb|CF761176.1|CF761176 DSAF1_72_B01.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_72_B01_A011 5', mRNA sequence
Length = 540
Score = 498 bits (251), Expect = e-139
Identities = 365/403 (90%)
Strand = Plus / Plus
Query: 125 agatggcggtgccgctgttgactcagaagatcgtgaagaagcgggtcaagcagttcaaga 184
||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 54 agatggcggtgcctctgctgacgaagaagatcgtgaagaagcgggtcaagcagttcaaga 113
Query: 185 ggccccacctcgaccgctacaagtgcctcaagccaagctggcgcaggcccaagggtatcg 244
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct: 114 ggccccacctcgaccgctacaagtgccttaagccaagctggcgcaggccaaagggtattg 173
Query: 245 actcccgtgtcaggcggaagttcaagggatgcaccttgatgcctaacattggatatggct 304
|||||||||||||| |||||||||||||||||||||||||||| |||||||| || ||||
Sbjct: 174 actcccgtgtcaggaggaagttcaagggatgcaccttgatgcccaacattggttacggct 233
Query: 305 ctgacaagaagaccaggcactatcttcccaacaagtttaagaagtttgtcgtgcacaatg 364
|||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct: 234 ctgacaagtcaaccaggcactaccttcccaacaagttcaagaagtttgtggtgcacaatg 293
Query: 365 tttctgagctggagttgcttatgatgcacaacaggacatactgtgctgaaatcgcacaca 424
| ||||||||||||||||| ||||||||||||||||| |||||||| || ||||| ||||
Sbjct: 294 tctctgagctggagttgctcatgatgcacaacaggacctactgtgccgagatcgcccaca 353
Query: 425 acgtgtccactaagaagcgcaaggaaatcgtggagcgagctgctcagcttgacattgtgg 484
|||| ||||| |||||||||||||| || || ||||| || | ||||||||||||||||
Sbjct: 354 acgtctccaccaagaagcgcaaggagattgttgagcgcgcctcacagcttgacattgtgg 413
Query: 485 tcaccaataagcttgcccgtctccgcagccaggaagatgagta 527
||||||| ||||| || | |||||||||||||| ||||||||
Sbjct: 414 tcaccaacaagctcgctaggctccgcagccaggaggatgagta 456
>gb|CF758834.1|CF758834 DSAF1_37_B06.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_37_B06_A011 3', mRNA sequence
Length = 577
Score = 482 bits (243), Expect = e-134
Identities = 345/379 (91%)
Strand = Plus / Plus
Query: 149 agaagatcgtgaagaagcgggtcaagcagttcaagaggccccacctcgaccgctacaagt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 agaagatcgtgaagaagcgggtcaagcagttcaagaggccccacctcgaccgctacaagt 68
Query: 209 gcctcaagccaagctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttca 268
|||| |||||||||||||||||||| |||||||| ||||||||||||||| |||||||||
Sbjct: 69 gccttaagccaagctggcgcaggccaaagggtattgactcccgtgtcaggaggaagttca 128
Query: 269 agggatgcaccttgatgcctaacattggatatggctctgacaagaagaccaggcactatc 328
||||||||||||||||||| |||||||| || |||||||||||| ||||||||||| |
Sbjct: 129 agggatgcaccttgatgcccaacattggttacggctctgacaagtcaaccaggcactacc 188
Query: 329 ttcccaacaagtttaagaagtttgtcgtgcacaatgtttctgagctggagttgcttatga 388
||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct: 189 ttcccaacaagttcaagaagtttgtggtgcacaatgtctctgagctggagttgctcatga 248
Query: 389 tgcacaacaggacatactgtgctgaaatcgcacacaacgtgtccactaagaagcgcaagg 448
||||||||||||| |||||||| || ||||| |||||||| ||||| |||||||||||||
Sbjct: 249 tgcacaacaggacctactgtgccgagatcgcccacaacgtctccaccaagaagcgcaagg 308
Query: 449 aaatcgtggagcgagctgctcagcttgacattgtggtcaccaataagcttgcccgtctcc 508
| || || ||||| || | ||||||||||||||||||||||| ||||| || | ||||
Sbjct: 309 agattgttgagcgcgcctcacagcttgacattgtggtcaccaacaagctcgctaggctcc 368
Query: 509 gcagccaggaagatgagta 527
|||||||||| ||||||||
Sbjct: 369 gcagccaggaggatgagta 387
>gb|AW925141.1|AW925141 WS1_75_H07.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 447
Score = 478 bits (241), Expect = e-133
Identities = 340/373 (91%)
Strand = Plus / Plus
Query: 125 agatggcggtgccgctgttgactcagaagatcgtgaagaagcgggtcaagcagttcaaga 184
||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 62 agatggcggtgcctctgctgacgaagaagatcgtgaagaagcgggtcaagcagttcaaga 121
Query: 185 ggccccacctcgaccgctacaagtgcctcaagccaagctggcgcaggcccaagggtatcg 244
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct: 122 ggccccacctcgaccgctacaagtgccttaagccaagctggcgcaggccaaagggtattg 181
Query: 245 actcccgtgtcaggcggaagttcaagggatgcaccttgatgcctaacattggatatggct 304
|||||||||||||| |||||||||||||||||||||||||||| |||||||| || ||||
Sbjct: 182 actcccgtgtcaggaggaagttcaagggatgcaccttgatgcccaacattggttacggct 241
Query: 305 ctgacaagaagaccaggcactatcttcccaacaagtttaagaagtttgtcgtgcacaatg 364
|||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct: 242 ctgacaagtcaaccaggcactaccttcccaacaagttcaagaagtttgtggtgcacaatg 301
Query: 365 tttctgagctggagttgcttatgatgcacaacaggacatactgtgctgaaatcgcacaca 424
| ||||||||||||||||| ||||||||||||||||| |||||||| || ||||| ||||
Sbjct: 302 tctctgagctggagttgctcatgatgcacaacaggacctactgtgccgagatcgcccaca 361
Query: 425 acgtgtccactaagaagcgcaaggaaatcgtggagcgagctgctcagcttgacattgtgg 484
|||| ||||| |||||||||||||| || || ||||| || | ||||||||||||||||
Sbjct: 362 acgtctccaccaagaagcgcaaggagattgttgagcgcgcctcacagcttgacattgtgg 421
Query: 485 tcaccaataagct 497
||||||| |||||
Sbjct: 422 tcaccaacaagct 434
>gb|AW744948.1|AW744948 LG1_385_B09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 606
Score = 474 bits (239), Expect = e-132
Identities = 344/379 (90%)
Strand = Plus / Plus
Query: 149 agaagatcgtgaagaagcgggtcaagcagttcaagaggccccacctcgaccgctacaagt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 agaagatcgtgaagaagcgggtcaagcagttcaagaggccccacctcgaccgctacaagt 68
Query: 209 gcctcaagccaagctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttca 268
|| | |||||||||||||||||||| |||||||| ||||||||||||||| |||||||||
Sbjct: 69 gctttaagccaagctggcgcaggccaaagggtattgactcccgtgtcaggaggaagttca 128
Query: 269 agggatgcaccttgatgcctaacattggatatggctctgacaagaagaccaggcactatc 328
||||||||||||||||||| |||||||| || |||||||||||| ||||||||||| |
Sbjct: 129 agggatgcaccttgatgcccaacattggttacggctctgacaagtcaaccaggcactacc 188
Query: 329 ttcccaacaagtttaagaagtttgtcgtgcacaatgtttctgagctggagttgcttatga 388
||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct: 189 ttcccaacaagttcaagaagtttgtggtgcacaatgtctctgagctggagttgctcatga 248
Query: 389 tgcacaacaggacatactgtgctgaaatcgcacacaacgtgtccactaagaagcgcaagg 448
||||||||||||| |||||||| || ||||| |||||||| ||||| |||||||||||||
Sbjct: 249 tgcacaacaggacctactgtgccgagatcgcccacaacgtctccaccaagaagcgcaagg 308
Query: 449 aaatcgtggagcgagctgctcagcttgacattgtggtcaccaataagcttgcccgtctcc 508
| || || ||||| || | ||||||||||||||||||||||| ||||| || | ||||
Sbjct: 309 agattgttgagcgcgcctcacagcttgacattgtggtcaccaacaagctcgctaggctcc 368
Query: 509 gcagccaggaagatgagta 527
|||||||||| ||||||||
Sbjct: 369 gcagccaggaggatgagta 387
>gb|AW745001.1|AW745001 LG1_385_B09.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 586
Score = 474 bits (239), Expect = e-132
Identities = 344/379 (90%)
Strand = Plus / Plus
Query: 149 agaagatcgtgaagaagcgggtcaagcagttcaagaggccccacctcgaccgctacaagt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 agaagatcgtgaagaagcgggtcaagcagttcaagaggccccacctcgaccgctacaagt 68
Query: 209 gcctcaagccaagctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttca 268
|| | |||||||||||||||||||| |||||||| ||||||||||||||| |||||||||
Sbjct: 69 gctttaagccaagctggcgcaggccaaagggtattgactcccgtgtcaggaggaagttca 128
Query: 269 agggatgcaccttgatgcctaacattggatatggctctgacaagaagaccaggcactatc 328
||||||||||||||||||| |||||||| || |||||||||||| ||||||||||| |
Sbjct: 129 agggatgcaccttgatgcccaacattggttacggctctgacaagtcaaccaggcactacc 188
Query: 329 ttcccaacaagtttaagaagtttgtcgtgcacaatgtttctgagctggagttgcttatga 388
||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct: 189 ttcccaacaagttcaagaagtttgtggtgcacaatgtctctgagctggagttgctcatga 248
Query: 389 tgcacaacaggacatactgtgctgaaatcgcacacaacgtgtccactaagaagcgcaagg 448
||||||||||||| |||||||| || ||||| |||||||| ||||| |||||||||||||
Sbjct: 249 tgcacaacaggacctactgtgccgagatcgcccacaacgtctccaccaagaagcgcaagg 308
Query: 449 aaatcgtggagcgagctgctcagcttgacattgtggtcaccaataagcttgcccgtctcc 508
| || || ||||| || | ||||||||||||||||||||||| ||||| || | ||||
Sbjct: 309 agattgttgagcgcgcctcacagcttgacattgtggtcaccaacaagctcgctaggctcc 368
Query: 509 gcagccaggaagatgagta 527
|||||||||| ||||||||
Sbjct: 369 gcagccaggaggatgagta 387
>gb|AW747718.1|AW747718 WS1_75_H07.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 567
Score = 460 bits (232), Expect = e-128
Identities = 334/368 (90%)
Strand = Plus / Plus
Query: 160 aagaagcgggtcaagcagttcaagaggccccacctcgaccgctacaagtgcctcaagcca 219
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 aagaagcgggtcaagcagttcaagaggccccacctcgaccgctacaagtgccttaagcca 60
Query: 220 agctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcacc 279
|||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 61 agctggcgcaggccaaagggtattgactcccgtgtcaggaggaagttcaagggatgcacc 120
Query: 280 ttgatgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaag 339
|||||||| |||||||| || |||||||||||| ||||||||||| ||||||||||||
Sbjct: 121 ttgatgcccaacattggttacggctctgacaagtcaaccaggcactaccttcccaacaag 180
Query: 340 tttaagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacagg 399
|| ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 181 ttcaagaagtttgtggtgcacaatgtctctgagctggagttgctcatgatgcacaacagg 240
Query: 400 acatactgtgctgaaatcgcacacaacgtgtccactaagaagcgcaaggaaatcgtggag 459
|| |||||||| || ||||| |||||||| ||||| |||||||||||||| || || |||
Sbjct: 241 acctactgtgccgagatcgcccacaacgtctccaccaagaagcgcaaggagattgttgag 300
Query: 460 cgagctgctcagcttgacattgtggtcaccaataagcttgcccgtctccgcagccaggaa 519
|| || | ||||||||||||||||||||||| ||||| || | ||||||||||||||
Sbjct: 301 cgcgcctcacagcttgacattgtggtcaccaacaagctcgctaggctccgcagccaggag 360
Query: 520 gatgagta 527
||||||||
Sbjct: 361 gatgagta 368
>gb|CF769577.1|CF769577 DSBF1_2_B06.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_2_B06_A010 3', mRNA sequence
Length = 560
Score = 458 bits (231), Expect = e-127
Identities = 321/351 (91%)
Strand = Plus / Plus
Query: 168 ggtcaagcagttcaagaggccccacctcgaccgctacaagtgcctcaagccaagctggcg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtcaagcagttcaagaggccccacctcgaccgctacaagtgcctcaagccaagctggcg 60
Query: 228 caggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgcaccttgatgcc 287
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 61 caggcccaagggtatcgactcccgcgtcaggcggaagttcaagggatgcaccttgatgcc 120
Query: 288 taacattggatatggctctgacaagaagaccaggcactatcttcccaacaagtttaagaa 347
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 121 caacattggatatggctctgacaagaagaccaggcactaccttcccaacaagttcaagaa 180
Query: 348 gtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggacatactg 407
|||||| || |||||||| | |||||||||| |||| ||||||||||||||||| |||||
Sbjct: 181 gtttgttgttcacaatgtctttgagctggagctgctgatgatgcacaacaggacttactg 240
Query: 408 tgctgaaatcgcacacaacgtgtccactaagaagcgcaaggaaatcgtggagcgagctgc 467
||||| || || |||||||||||||| ||||||||||| || || ||||| |||||
Sbjct: 241 cgctgagattgcccacaacgtgtccacccgcaagcgcaaggagattgttgagcgtgctgc 300
Query: 468 tcagcttgacattgtggtcaccaataagcttgcccgtctccgcagccagga 518
|| || ||||||||||||||||| ||||||||| | || |||||||||||
Sbjct: 301 gcaactggacattgtggtcaccaacaagcttgccaggcttcgcagccagga 351
>gb|CF072684.1|CF072684 FE1_25_C08.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_25_C08_A002 3', mRNA sequence
Length = 600
Score = 432 bits (218), Expect = e-119
Identities = 320/354 (90%)
Strand = Plus / Plus
Query: 174 gcagttcaagaggccccacctcgaccgctacaagtgcctcaagccaagctggcgcaggcc 233
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 57 gcaggtcaagaggccccacctcgaccgctacaagtgccttaagccaagctggcgcaggcc 116
Query: 234 caagggtatcgactcccgtgtcaggcggaagttcaagggatgcaccttgatgcctaacat 293
|||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 117 aaagggtattgactcccgtgtcaggaggaagttcaagggatgcaccttgatgcccaacat 176
Query: 294 tggatatggctctgacaagaagaccaggcactatcttcccaacaagtttaagaagtttgt 353
||| || |||||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct: 177 tggttacggctctgacaagtcaaccaggcactaccttcccaacaagttcaagaagtttgt 236
Query: 354 cgtgcacaatgtttctgagctggagttgcttatgatgcacaacaggacatactgtgctga 413
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 237 ggtgcacaatgtctctgagctggagttgcttatgatgcacaacaggacctactgtgccga 296
Query: 414 aatcgcacacaacgtgtccactaagaagcgcaaggaaatcgtggagcgagctgctcagct 473
||||| |||||||| ||||| |||||||||||||| || || ||||| || | |||||
Sbjct: 297 gatcgcccacaacgtctccaccaagaagcgcaaggagattgttgagcgcgcctcacagct 356
Query: 474 tgacattgtggtcaccaataagcttgcccgtctccgcagccaggaagatgagta 527
|||||||||||||||||| ||||| || | |||||||||||||| ||||||||
Sbjct: 357 tgacattgtggtcaccaacaagctcgctaggctccgcagccaggaggatgagta 410
>gb|CL194203.1|CL194203 104_418_10941467_114_32283_040 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10941467, DNA
sequence
Length = 715
Score = 404 bits (204), Expect = e-111
Identities = 275/298 (92%), Gaps = 3/298 (1%)
Strand = Plus / Plus
Query: 391 cacaacaggacatactgtgctgaaatcgcacacaacgtgtccactaagaagcgcaaggaa 450
||||||||||| |||||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct: 243 cacaacaggacctactgtgctgaaattgcacacgatgtgtccactaagaagcgcaaggaa 302
Query: 451 atcgtggagcgagctgctcagcttgacattgtggtcaccaataagcttgcccgtctccgc 510
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 303 attgtggagcgagctgctcagcttgacattgtggtcaccaacaagcttgcccgtcttcgc 362
Query: 511 agccaggaagatgagtaaactgtttctactagcagtagttttggaatggtgtggctttag 570
|||||||| |||||||||||||||| |||| |||||||||||| ||||| ||||||||
Sbjct: 363 agccaggaggatgagtaaactgttt---ctagtagtagttttggagtggtgcggctttag 419
Query: 571 aggacttgctgtgtatgatgattcagttatcatttctgtttgcttcataattctgagtac 630
||||||||||||||||||||| ||||||||| | |||||||||||||| |||||||||
Sbjct: 420 aggacttgctgtgtatgatgaatcagttatcctatctgtttgcttcatggttctgagtat 479
Query: 631 tgtgaacccacttgctatcagtagcaacttaactgtggcactgttattatcttttacc 688
|||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||
Sbjct: 480 tgtgaacccacttgctatcagtagcaacctaactgtggcaatattattatcttttacc 537
Score = 212 bits (107), Expect = 3e-053
Identities = 116/119 (97%)
Strand = Plus / Plus
Query: 281 tgatgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaacaagt 340
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 tgatgcctaacattggatatggctctgacaagaagaccaggcactatctccccaacaagt 60
Query: 341 ttaagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacagg 399
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 61 ttaagaagtttgtcgtgcataatgtctctgagctggagttgcttatgatgcacaacagg 119
>gb|CF758026.1|CF758026 DSAF1_26_D04.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_26_D04_A011 3', mRNA sequence
Length = 482
Score = 400 bits (202), Expect = e-110
Identities = 289/318 (90%)
Strand = Plus / Plus
Query: 201 ctacaagtgcctcaagccaagctggcgcaggcccaagggtatcgactcccgtgtcaggcg 260
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 ctacaagtgcctcaagccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcg 60
Query: 261 gaagttcaagggatgcaccttgatgcctaacattggatatggctctgacaagaagaccag 320
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 61 gaagttcaagggatgcaccttgatgcccaacattggatatggctctgacaagaagaccag 120
Query: 321 gcactatcttcccaacaagtttaagaagtttgtcgtgcacaatgtttctgagctggagtt 380
|||||| |||||||||||||| ||||||||||| || |||||||| |||||||||||| |
Sbjct: 121 gcactaccttcccaacaagttcaagaagtttgttgttcacaatgtctctgagctggagct 180
Query: 381 gcttatgatgcacaacaggacatactgtgctgaaatcgcacacaacgtgtccactaagaa 440
||| ||||||||||||||||| ||||| ||||| || || |||||||||||||| ||
Sbjct: 181 gctgatgatgcacaacaggacttactgcgctgagattgcccacaacgtgtccacccgcaa 240
Query: 441 gcgcaaggaaatcgtggagcgagctgctcagcttgacattgtggtcaccaataagcttgc 500
||||||||| || || ||||| ||||| || || ||||||||||||||||| ||||||||
Sbjct: 241 gcgcaaggagattgttgagcgtgctgcgcaactggacattgtggtcaccaacaagcttgc 300
Query: 501 ccgtctccgcagccagga 518
| | || |||||||||||
Sbjct: 301 caggcttcgcagccagga 318
>gb|CF486826.1|CF486826 POL1_40_B05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_40_B05_A002 3', mRNA sequence
Length = 523
Score = 391 bits (197), Expect = e-107
Identities = 316/353 (89%), Gaps = 2/353 (0%)
Strand = Plus / Plus
Query: 177 gttcaagaggccccacctcgaccgctacaagtgcctcaagccaagctggcgcaggcccaa 236
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 1 gttcaagaggccccacctcgaccgctacaagtgccttaagccaagctggcgcaggccaaa 60
Query: 237 gggtatcgactcccgtgtcaggcggaagttcaagggatgcaccttgatgcctaacattgg 296
|||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||||||
Sbjct: 61 gggtattgactcccgtgtcaggaggaagttcaagggttgcaccttgatgcccaacattgg 120
Query: 297 atatggctctgacaagaagacca-ggcactatcttcccaacaa-gtttaagaagtttgtc 354
|| |||||||||||| |||| ||||||| ||||||||||| ||| |||||||||||
Sbjct: 121 ttacggctctgacaagtcaaccagggcactaccttcccaacaatgttcaagaagtttgtg 180
Query: 355 gtgcacaatgtttctgagctggagttgcttatgatgcacaacaggacatactgtgctgaa 414
||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct: 181 gtgcacaatgtctctgagctggagttgctcatgatgcacaacaggacctactgtgccgag 240
Query: 415 atcgcacacaacgtgtccactaagaagcgcaaggaaatcgtggagcgagctgctcagctt 474
||||| |||||||| ||||| |||||||||||||| || || ||||| || | ||||||
Sbjct: 241 atcgcccacaacgtctccaccaagaagcgcaaggagattgttgagcgcgcctcacagctt 300
Query: 475 gacattgtggtcaccaataagcttgcccgtctccgcagccaggaagatgagta 527
||||||||||||||||| ||||| || | |||||||||||||| ||||||||
Sbjct: 301 gacattgtggtcaccaacaagctcgctaggctccgcagccaggaggatgagta 353
>gb|CW348914.1|CW348914 fsbb001f009i04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f009i04, DNA
sequence
Length = 430
Score = 319 bits (161), Expect = 2e-085
Identities = 179/185 (96%)
Strand = Plus / Minus
Query: 215 agccaagctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggat 274
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 243 agccaagctggcgcaggcccaagggtattgactctcgtgtcaggcggaagttcaaaggat 184
Query: 275 gcaccttgatgcctaacattggatatggctctgacaagaagaccaggcactatcttccca 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 183 gcaccttgatgcctaacattggatatggctctgacaagaagaccaggcactatctcccca 124
Query: 335 acaagtttaagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcaca 394
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 123 acaagtttaagaagtttgtcgtgcataatgtctctgagctggagttgcttatgatgcaca 64
Query: 395 acagg 399
|||||
Sbjct: 63 acagg 59
>gb|BE593156.1|BE593156 WS1_98_C01.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 454
Score = 297 bits (150), Expect = 7e-079
Identities = 249/282 (88%)
Strand = Plus / Plus
Query: 246 ctcccgtgtcaggcggaagttcaagggatgcaccttgatgcctaacattggatatggctc 305
||||||||||||| |||||||||||||||||||||||||||| |||||||| || |||||
Sbjct: 9 ctcccgtgtcaggaggaagttcaagggatgcaccttgatgcccaacattggttacggctc 68
Query: 306 tgacaagaagaccaggcactatcttcccaacaagtttaagaagtttgtcgtgcacaatgt 365
||||||| ||||||||||| |||||||||||||| || |||||||| |||||||||||
Sbjct: 69 tgacaagtcaaccaggcactaccttcccaacaagttcaacaagtttgtggtgcacaatgt 128
Query: 366 ttctgagctggagttgcttatgatgcacaacaggacatactgtgctgaaatcgcacacaa 425
||||||||||||||||| ||||||||||||||||| |||||| | || ||||| |||||
Sbjct: 129 ctctgagctggagttgctcatgatgcacaacaggacctactgtaccgagatcgcccacaa 188
Query: 426 cgtgtccactaagaagcgcaaggaaatcgtggagcgagctgctcagcttgacattgtggt 485
||| ||||| |||||||||||||| || || ||||| || | |||||||||||||||||
Sbjct: 189 cgtctccaccaagaagcgcaaggagattgttgagcgcgcctcacagcttgacattgtggt 248
Query: 486 caccaataagcttgcccgtctccgcagccaggaagatgagta 527
|||||| ||||| || | |||||||||||||| ||||||||
Sbjct: 249 caccaacaagctcgctaggctccgcagccaggaggatgagta 290
>gb|CW028426.1|CW028426 104_255_10499086_114_30394 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499086, DNA
sequence
Length = 736
Score = 295 bits (149), Expect = 3e-078
Identities = 176/185 (95%)
Strand = Plus / Minus
Query: 215 agccaagctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggat 274
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 262 agccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcggaagttcaagggat 203
Query: 275 gcaccttgatgcctaacattggatatggctctgacaagaagaccaggcactatcttccca 334
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 202 gcaccttgatgcccaacattggatatggctctgacaagaagaccaggcactaccttccca 143
Query: 335 acaagtttaagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcaca 394
||||||| ||||||||||| || |||||||| |||||||||||| |||| ||||||||||
Sbjct: 142 acaagttcaagaagtttgttgttcacaatgtctctgagctggagctgctgatgatgcaca 83
Query: 395 acagg 399
|||||
Sbjct: 82 acagg 78
>gb|CW360434.1|CW360434 fsbb001f028i09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f028i09, DNA
sequence
Length = 767
Score = 295 bits (149), Expect = 3e-078
Identities = 176/185 (95%)
Strand = Plus / Minus
Query: 215 agccaagctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggat 274
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 293 agccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcggaagttcaagggat 234
Query: 275 gcaccttgatgcctaacattggatatggctctgacaagaagaccaggcactatcttccca 334
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 233 gcaccttgatgcccaacattggatatggctctgacaagaagaccaggcactaccttccca 174
Query: 335 acaagtttaagaagtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcaca 394
||||||| ||||||||||| || |||||||| |||||||||||| |||| ||||||||||
Sbjct: 173 acaagttcaagaagtttgttgttcacaatgtctctgagctggagctgctgatgatgcaca 114
Query: 395 acagg 399
|||||
Sbjct: 113 acagg 109
>gb|CL194204.1|CL194204 104_418_10941467_116_32287_040 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10941467, DNA
sequence
Length = 669
Score = 182 bits (92), Expect = 3e-044
Identities = 122/132 (92%)
Strand = Plus / Minus
Query: 557 tggtgtggctttagaggacttgctgtgtatgatgattcagttatcatttctgtttgcttc 616
||||| ||||||||||||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct: 668 tggtgcggctttagaggacttgctgtgtatgatgaatcagttatcctatctgtttgcttc 609
Query: 617 ataattctgagtactgtgaacccacttgctatcagtagcaacttaactgtggcactgtta 676
|| ||||||||| |||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct: 608 atggttctgagtattgtgaacccacttgctatcagtagcaacctaactgtggcaatatta 549
Query: 677 ttatcttttacc 688
||||||||||||
Sbjct: 548 ttatcttttacc 537
>gb|DN552763.1|DN552763 pSHR-RT-MR-H2_F07_C210 pSHR Sorghum halepense cDNA, mRNA sequence
Length = 379
Score = 170 bits (86), Expect = 1e-040
Identities = 149/170 (87%)
Strand = Plus / Minus
Query: 358 cacaatgtttctgagctggagttgcttatgatgcacaacaggacatactgtgctgaaatc 417
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||| || |||
Sbjct: 379 cacaatgtctctgagctggagttgctcatgatgcacaacaggacctactgtgccgagatc 320
Query: 418 gcacacaacgtgtccactaagaagcgcaaggaaatcgtggagcgagctgctcagcttgac 477
|| |||||||| ||||| |||||||||||||| || || ||||| || | |||||||||
Sbjct: 319 gcccacaacgtctccaccaagaagcgcaaggagattgttgagcgcgcctcacagcttgac 260
Query: 478 attgtggtcaccaataagcttgcccgtctccgcagccaggaagatgagta 527
|||||||||||||| ||||| || | |||||||||||||| ||||||||
Sbjct: 259 attgtggtcaccaacaagctcgctaggctccgcagccaggaggatgagta 210
>gb|CL190317.1|CL190317 104_408_10906000_116_32502_058 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906000, DNA
sequence
Length = 693
Score = 167 bits (84), Expect = 2e-039
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 125 agatggcggtgccgctgttgactcagaagatcgtgaagaagcgggtcaagcagttcaaga 184
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 387 agatggcggtgccgctgctgacgcagaagatcgtgaagaagcgggtcaagcagttcaaga 446
Query: 185 ggccccacctcgaccgctacaagtgcctcaag 216
||||||||||||||||||||||||||||||||
Sbjct: 447 ggccccacctcgaccgctacaagtgcctcaag 478
>gb|CW028427.1|CW028427 104_255_10499086_116_30393 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499086, DNA
sequence
Length = 787
Score = 167 bits (84), Expect = 2e-039
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 125 agatggcggtgccgctgttgactcagaagatcgtgaagaagcgggtcaagcagttcaaga 184
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 233 agatggcggtgccgctgctgacgcagaagatcgtgaagaagcgggtcaagcagttcaaga 292
Query: 185 ggccccacctcgaccgctacaagtgcctcaag 216
||||||||||||||||||||||||||||||||
Sbjct: 293 ggccccacctcgaccgctacaagtgcctcaag 324
>gb|CW170205.1|CW170205 104_580_11155083_116_36513_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155083, DNA
sequence
Length = 665
Score = 167 bits (84), Expect = 2e-039
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 125 agatggcggtgccgctgttgactcagaagatcgtgaagaagcgggtcaagcagttcaaga 184
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 341 agatggcggtgccgctgctgacgcagaagatcgtgaagaagcgggtcaagcagttcaaga 400
Query: 185 ggccccacctcgaccgctacaagtgcctcaag 216
||||||||||||||||||||||||||||||||
Sbjct: 401 ggccccacctcgaccgctacaagtgcctcaag 432
>gb|CW192941.1|CW192941 104_615_11179298_148_36771_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11179298, DNA
sequence
Length = 703
Score = 167 bits (84), Expect = 2e-039
Identities = 90/92 (97%)
Strand = Plus / Minus
Query: 125 agatggcggtgccgctgttgactcagaagatcgtgaagaagcgggtcaagcagttcaaga 184
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 563 agatggcggtgccgctgctgacgcagaagatcgtgaagaagcgggtcaagcagttcaaga 504
Query: 185 ggccccacctcgaccgctacaagtgcctcaag 216
||||||||||||||||||||||||||||||||
Sbjct: 503 ggccccacctcgaccgctacaagtgcctcaag 472
>gb|CW360433.1|CW360433 fsbb001f028i09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f028i09, DNA
sequence
Length = 752
Score = 167 bits (84), Expect = 2e-039
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 125 agatggcggtgccgctgttgactcagaagatcgtgaagaagcgggtcaagcagttcaaga 184
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 6 agatggcggtgccgctgctgacgcagaagatcgtgaagaagcgggtcaagcagttcaaga 65
Query: 185 ggccccacctcgaccgctacaagtgcctcaag 216
||||||||||||||||||||||||||||||||
Sbjct: 66 ggccccacctcgaccgctacaagtgcctcaag 97
>gb|CW502444.1|CW502444 fsbb001f298m13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f298m13, DNA
sequence
Length = 606
Score = 167 bits (84), Expect = 2e-039
Identities = 90/92 (97%)
Strand = Plus / Minus
Query: 125 agatggcggtgccgctgttgactcagaagatcgtgaagaagcgggtcaagcagttcaaga 184
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 575 agatggcggtgccgctgctgacgcagaagatcgtgaagaagcgggtcaagcagttcaaga 516
Query: 185 ggccccacctcgaccgctacaagtgcctcaag 216
||||||||||||||||||||||||||||||||
Sbjct: 515 ggccccacctcgaccgctacaagtgcctcaag 484
>gb|CF761338.1|CF761338 DSAF1_74_A01.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_74_A01_A011 5', mRNA sequence
Length = 439
Score = 163 bits (82), Expect = 3e-038
Identities = 112/122 (91%)
Strand = Plus / Plus
Query: 260 ggaagttcaagggatgcaccttgatgcctaacattggatatggctctgacaagaagacca 319
|||||||||||||||||||||||||||| |||||||| || |||||||||||| ||||
Sbjct: 3 ggaagttcaagggatgcaccttgatgcccaacattggttacggctctgacaagtcaacca 62
Query: 320 ggcactatcttcccaacaagtttaagaagtttgtcgtgcacaatgtttctgagctggagt 379
||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct: 63 ggcactaccttcccaacaagttcaagaagtttgtggtgcacaatgtctctgagctggagt 122
Query: 380 tg 381
||
Sbjct: 123 tg 124
Score = 99.6 bits (50), Expect = 3e-019
Identities = 104/122 (85%)
Strand = Plus / Plus
Query: 406 tgtgctgaaatcgcacacaacgtgtccactaagaagcgcaaggaaatcgtggagcgagct 465
||||| || ||||| |||||||| ||||| |||||||||||||| || || ||||| ||
Sbjct: 123 tgtgccgagatcgcccacaacgtctccaccaagaagcgcaaggagattgttgagcgcgcc 182
Query: 466 gctcagcttgacattgtggtcaccaataagcttgcccgtctccgcagccaggaagatgag 525
| ||||||||||||||||||||||| ||||| || | |||||||||||||| ||||||
Sbjct: 183 tcacagcttgacattgtggtcaccaacaagctcgctaggctccgcagccaggaggatgag 242
Query: 526 ta 527
||
Sbjct: 243 ta 244
>gb|CW330151.1|CW330151 104_827_11480221_116_36011_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480221, DNA
sequence
Length = 123
Score = 161 bits (81), Expect = 1e-037
Identities = 96/101 (95%)
Strand = Plus / Minus
Query: 391 cacaacaggacatactgtgctgaaatcgcacacaacgtgtccactaagaagcgcaaggaa 450
||||||||||| |||||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct: 104 cacaacaggacctactgtgctgaaattgcacacgatgtgtccactaagaagcgcaaggaa 45
Query: 451 atcgtggagcgagctgctcagcttgacattgtggtcaccaa 491
|| ||||||||||||||||||||||||||||||||||||||
Sbjct: 44 attgtggagcgagctgctcagcttgacattgtggtcaccaa 4
>gb|CW330152.1|CW330152 104_827_11480221_148_36012_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480221, DNA
sequence
Length = 123
Score = 161 bits (81), Expect = 1e-037
Identities = 96/101 (95%)
Strand = Plus / Plus
Query: 391 cacaacaggacatactgtgctgaaatcgcacacaacgtgtccactaagaagcgcaaggaa 450
||||||||||| |||||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct: 18 cacaacaggacctactgtgctgaaattgcacacgatgtgtccactaagaagcgcaaggaa 77
Query: 451 atcgtggagcgagctgctcagcttgacattgtggtcaccaa 491
|| ||||||||||||||||||||||||||||||||||||||
Sbjct: 78 attgtggagcgagctgctcagcttgacattgtggtcaccaa 118
>gb|CW137062.1|CW137062 104_523_11119092_148_34867_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11119092, DNA
sequence
Length = 665
Score = 159 bits (80), Expect = 4e-037
Identities = 89/92 (96%)
Strand = Plus / Plus
Query: 125 agatggcggtgccgctgttgactcagaagatcgtgaagaagcgggtcaagcagttcaaga 184
|||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 528 agatggcggtgccgttgctgacgcagaagatcgtgaagaagcgggtcaagcagttcaaga 587
Query: 185 ggccccacctcgaccgctacaagtgcctcaag 216
||||||||||||||||||||||||||||||||
Sbjct: 588 ggccccacctcgaccgctacaagtgcctcaag 619
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 96 cttcgccgcaaaccgctctgggcgcttgaag 126
|||||| ||||||||||||||| ||||||||
Sbjct: 388 cttcgctgcaaaccgctctgggtgcttgaag 418
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 gataaaagacccgctcctgtcccgcaggca 30
|||||||||||| |||||||||| ||||||
Sbjct: 300 gataaaagacccactcctgtcccacaggca 329
>gb|CW186907.1|CW186907 104_605_11166811_148_36718_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166811, DNA
sequence
Length = 697
Score = 159 bits (80), Expect = 4e-037
Identities = 89/92 (96%)
Strand = Plus / Minus
Query: 125 agatggcggtgccgctgttgactcagaagatcgtgaagaagcgggtcaagcagttcaaga 184
|||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 211 agatggcggtgccgttgctgacgcagaagatcgtgaagaagcgggtcaagcagttcaaga 152
Query: 185 ggccccacctcgaccgctacaagtgcctcaag 216
||||||||||||||||||||||||||||||||
Sbjct: 151 ggccccacctcgaccgctacaagtgcctcaag 120
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 96 cttcgccgcaaaccgctctgggcgcttgaag 126
|||||| ||||||||||||||| ||||||||
Sbjct: 351 cttcgctgcaaaccgctctgggtgcttgaag 321
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1 gataaaagacccgctcctgtcccgcaggca 30
|||||||||||| |||||||||| ||||||
Sbjct: 439 gataaaagacccactcctgtcccacaggca 410
>gb|CW348913.1|CW348913 fsbb001f009i04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f009i04, DNA
sequence
Length = 470
Score = 159 bits (80), Expect = 4e-037
Identities = 89/92 (96%)
Strand = Plus / Plus
Query: 125 agatggcggtgccgctgttgactcagaagatcgtgaagaagcgggtcaagcagttcaaga 184
|||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 3 agatggcggtgccgttgctgacgcagaagatcgtgaagaagcgggtcaagcagttcaaga 62
Query: 185 ggccccacctcgaccgctacaagtgcctcaag 216
||||||||||||||||||||||||||||||||
Sbjct: 63 ggccccacctcgaccgctacaagtgcctcaag 94
>gb|CW376984.1|CW376984 fsbb001f055b21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f055b21, DNA
sequence
Length = 707
Score = 159 bits (80), Expect = 4e-037
Identities = 89/92 (96%)
Strand = Plus / Minus
Query: 125 agatggcggtgccgctgttgactcagaagatcgtgaagaagcgggtcaagcagttcaaga 184
|||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 94 agatggcggtgccgttgctgacgcagaagatcgtgaagaagcgggtcaagcagttcaaga 35
Query: 185 ggccccacctcgaccgctacaagtgcctcaag 216
||||||||||||||||||||||||||||||||
Sbjct: 34 ggccccacctcgaccgctacaagtgcctcaag 3
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 96 cttcgccgcaaaccgctctgggcgcttgaag 126
|||||| ||||||||||||||| ||||||||
Sbjct: 234 cttcgctgcaaaccgctctgggtgcttgaag 204
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1 gataaaagacccgctcctgtcccgcaggca 30
|||||||||||| |||||||||| ||||||
Sbjct: 322 gataaaagacccactcctgtcccacaggca 293
>gb|CW137061.1|CW137061 104_523_11119092_116_34871_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11119092, DNA
sequence
Length = 546
Score = 143 bits (72), Expect = 2e-032
Identities = 87/92 (94%)
Strand = Plus / Minus
Query: 125 agatggcggtgccgctgttgactcagaagatcgtgaagaagcgggtcaagcagttcaaga 184
||||| |||||||| || |||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 280 agatgtcggtgccgttgctgacgcagatgatcgtgaagaagcgggtcaagcagttcaaga 221
Query: 185 ggccccacctcgaccgctacaagtgcctcaag 216
||||||||||||||||||||||||||||||||
Sbjct: 220 ggccccacctcgaccgctacaagtgcctcaag 189
Score = 40.1 bits (20), Expect = 0.26
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 103 gcaaaccgctctgggcgcttgaag 126
||||||||||||||| ||||||||
Sbjct: 413 gcaaaccgctctgggtgcttgaag 390
>gb|CW297816.1|CW297816 104_780_11462242_148_35653_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462242, DNA
sequence
Length = 613
Score = 143 bits (72), Expect = 2e-032
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 125 agatggcggtgccgctgttgactcagaagatcgtgaagaagcgggtcaagcagttcaaga 184
||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 10 agatggcggtgcctctgctgacgaagaagatcgtgaagaagcgggtcaagcagttcaaga 69
Query: 185 ggccccacctcgaccgctacaagtgcct 212
||||||||||||||||||||||||||||
Sbjct: 70 ggccccacctcgaccgctacaagtgcct 97
>gb|CW483366.1|CW483366 fsbb001f244p16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f244p16, DNA
sequence
Length = 661
Score = 139 bits (70), Expect = 4e-031
Identities = 82/86 (95%)
Strand = Plus / Minus
Query: 125 agatggcggtgccgctgttgactcagaagatcgtgaagaagcgggtcaagcagttcaaga 184
||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 589 agatggcggtgcctctgctgacgaagaagatcgtgaagaagcgggtcaagcagttcaaga 530
Query: 185 ggccccacctcgaccgctacaagtgc 210
||||||||||||||||||||||||||
Sbjct: 529 ggccccacctcgaccgctacaagtgc 504
>gb|CW170206.1|CW170206 104_580_11155083_148_36514_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155083, DNA
sequence
Length = 699
Score = 131 bits (66), Expect = 9e-029
Identities = 69/70 (98%)
Strand = Plus / Minus
Query: 215 agccaagctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggat 274
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 70 agccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcggaagttcaagggat 11
Query: 275 gcaccttgat 284
||||||||||
Sbjct: 10 gcaccttgat 1
>gb|CW483365.1|CW483365 fsbb001f244p16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f244p16, DNA
sequence
Length = 546
Score = 129 bits (65), Expect = 4e-028
Identities = 84/89 (94%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 125 agatggcggtgccgctgttgactcagaagatcgtgaagaagcgggtcaagcagttcaaga 184
||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 408 agatggcggtgcctctgctgacgaagaagatcgtgaagaagcgggtcaagcagttcaaga 467
Query: 185 gg-ccccacctcgaccgctacaagtgcct 212
|| ||||||||||||||||||||||||||
Sbjct: 468 ggcccccacctcgaccgctacaagtgcct 496
>gb|CL190316.1|CL190316 104_408_10906000_114_32484_058 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906000, DNA
sequence
Length = 695
Score = 91.7 bits (46), Expect = 8e-017
Identities = 49/50 (98%)
Strand = Plus / Minus
Query: 215 agccaagctggcgcaggcccaagggtatcgactcccgtgtcaggcggaag 264
||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 50 agccaagctggcgcaggcccaagggtatcgactcccgcgtcaggcggaag 1
>gb|CW397161.1|CW397161 fsbb001f085o22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f085o22, DNA
sequence
Length = 581
Score = 85.7 bits (43), Expect = 5e-015
Identities = 103/123 (83%)
Strand = Plus / Minus
Query: 396 caggacatactgtgctgaaatcgcacacaacgtgtccactaagaagcgcaaggaaatcgt 455
|||||| ||||| ||||| || || |||||||||||||| ||||||||||| || ||
Sbjct: 205 caggacttactgcgctgagattgcccacaacgtgtccacccgcaagcgcaaggagattgt 146
Query: 456 ggagcgagctgctcagcttgacattgtggtcaccaataagcttgcccgtctccgcagcca 515
||||| ||||| || || ||||||||||||||||| ||||||||| | || ||||||||
Sbjct: 145 tgagcgtgctgcgcaactggacattgtggtcaccaacaagcttgccaggcttcgcagcca 86
Query: 516 gga 518
|||
Sbjct: 85 gga 83
Score = 65.9 bits (33), Expect = 5e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 347 agtttgtcgtgcacaatgtttctgagctggagttgcttatgatgcacaacagg 399
||||||| || |||||||| |||||||||||| |||| |||||||||||||||
Sbjct: 581 agtttgttgttcacaatgtctctgagctggagctgctgatgatgcacaacagg 529
>gb|CW429421.1|CW429421 fsbb001f142k18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f142k18, DNA
sequence
Length = 795
Score = 85.7 bits (43), Expect = 5e-015
Identities = 103/123 (83%)
Strand = Plus / Plus
Query: 396 caggacatactgtgctgaaatcgcacacaacgtgtccactaagaagcgcaaggaaatcgt 455
|||||| ||||| ||||| || || |||||||||||||| ||||||||||| || ||
Sbjct: 108 caggacttactgcgctgagattgcccacaacgtgtccacccgcaagcgcaaggagattgt 167
Query: 456 ggagcgagctgctcagcttgacattgtggtcaccaataagcttgcccgtctccgcagcca 515
||||| ||||| || || ||||||||||||||||| ||||||||| | || ||||||||
Sbjct: 168 tgagcgtgctgcgcaactggacattgtggtcaccaacaagcttgccaggcttcgcagcca 227
Query: 516 gga 518
|||
Sbjct: 228 gga 230
>gb|CF071010.1|CF071010 FE1_15_H05.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_15_H05_A002 3', mRNA sequence
Length = 720
Score = 83.8 bits (42), Expect = 2e-014
Identities = 139/170 (81%), Gaps = 1/170 (0%)
Strand = Plus / Plus
Query: 217 ccaagctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgc 276
||||||||| ||||||| ||||||||||||||| |||||| ||| |||||| | |
Sbjct: 48 ccaagctggtgcaggccaaagggtatcgactcctgtgtcataaggaggttcaacaggtca 107
Query: 277 accttgatgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaac 336
|| |||||||| |||||||| |||| ||||||||||| | |||||| || ||||| |||
Sbjct: 108 actttgatgcccaacattggttatgattctgacaagaa-agcaggcattaccttcctaac 166
Query: 337 aagtttaagaagtttgtcgtgcacaatgtttctgagctggagttgcttat 386
| ||| ||||| ||||| || |||||||| ||||| || || ||||||||
Sbjct: 167 aggttgaagaaatttgttgtccacaatgtctctgacctagatttgcttat 216
>gb|BZ337132.1|BZ337132 ia85e02.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia85e02 5', DNA sequence
Length = 398
Score = 81.8 bits (41), Expect = 8e-014
Identities = 83/97 (85%)
Strand = Plus / Plus
Query: 431 ccactaagaagcgcaaggaaatcgtggagcgagctgctcagcttgacattgtggtcacca 490
|||| |||||||||||||| || || ||||| || | ||||||||||||||||||||||
Sbjct: 1 ccaccaagaagcgcaaggagattgttgagcgcgcctcacagcttgacattgtggtcacca 60
Query: 491 ataagcttgcccgtctccgcagccaggaagatgagta 527
| ||||| || | |||||||||||||| ||||||||
Sbjct: 61 acaagctcgctaggctccgcagccaggaggatgagta 97
>gb|AW284428.1|AW284428 LG1_289_E04.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 265
Score = 69.9 bits (35), Expect = 3e-010
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 469 cagcttgacattgtggtcaccaataagcttgcccgtctccgcagccaggaagatgagta 527
||||||||||||||||||||||| ||||| || | |||||||||||||| ||||||||
Sbjct: 29 cagcttgacattgtggtcaccaacaagctcgctaggctccgcagccaggaggatgagta 87
>gb|BF317674.1|BF317674 OV1_11_G08.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 200
Score = 69.9 bits (35), Expect = 3e-010
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 469 cagcttgacattgtggtcaccaataagcttgcccgtctccgcagccaggaagatgagta 527
||||||||||||||||||||||| ||||| || | |||||||||||||| ||||||||
Sbjct: 13 cagcttgacattgtggtcaccaacaagctcgctaggctccgcagccaggaggatgagta 71
>gb|BF318078.1|BF318078 OV1_11_G08.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 279
Score = 69.9 bits (35), Expect = 3e-010
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 469 cagcttgacattgtggtcaccaataagcttgcccgtctccgcagccaggaagatgagta 527
||||||||||||||||||||||| ||||| || | |||||||||||||| ||||||||
Sbjct: 13 cagcttgacattgtggtcaccaacaagctcgctaggctccgcagccaggaggatgagta 71
>gb|CL703679.2|CL703679 SP__Bb0004B09.f SP__Bb Sorghum propinquum genomic clone
SP__Bb0004B09 5', DNA sequence
Length = 778
Score = 58.0 bits (29), Expect = 1e-006
Identities = 136/169 (80%), Gaps = 2/169 (1%)
Strand = Plus / Minus
Query: 217 ccaagctggcgcaggcccaagggtatcgactcccgtgtcaggcggaagttcaagggatgc 276
||||||||| ||||||| |||| |||||||||| |||||| ||| |||||| | |
Sbjct: 416 ccaagctggtgcaggccaaagg-tatcgactcctgtgtcataaggaggttcaacaggtca 358
Query: 277 accttgatgcctaacattggatatggctctgacaagaagaccaggcactatcttcccaac 336
|| |||||||| |||||||| |||| ||||||||||| | |||||| || ||||| |||
Sbjct: 357 actttgatgcccaacattggttatgattctgacaagaa-agcaggcattaccttcctaac 299
Query: 337 aagtttaagaagtttgtcgtgcacaatgtttctgagctggagttgctta 385
| ||| ||||| ||||| || |||||| | ||||| || || |||||||
Sbjct: 298 aggttgaagaaatttgttgtccacaatatctctgacctagatttgctta 250
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 146,921
Number of Sequences: 832831
Number of extensions: 146921
Number of successful extensions: 39350
Number of sequences better than 0.5: 56
Number of HSP's better than 0.5 without gapping: 55
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 39269
Number of HSP's gapped (non-prelim): 70
length of query: 688
length of database: 491,359,669
effective HSP length: 19
effective length of query: 669
effective length of database: 475,535,880
effective search space: 318133503720
effective search space used: 318133503720
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)