BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2477970.2.1
(699 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL173357.1|CL173357 104_376_10890821_116_31795_341 Sorgh... 952 0.0
gb|CX616425.1|CX616425 GABR1_27_G06.g1_A002 GA- or brassino... 944 0.0
gb|AW678009.1|AW678009 WS1_12_F02.g1_A002 Water-stressed 1 ... 916 0.0
gb|CW159606.1|CW159606 104_565_11149446_148_36405_017 Sorgh... 908 0.0
gb|CN146570.1|CN146570 WOUND1_42_C10.b1_A002 Wounded leaves... 902 0.0
gb|AW924657.1|AW924657 WS1_71_H07.b1_A002 Water-stressed 1 ... 856 0.0
gb|BE600562.1|BE600562 PI1_94_F10.b1_A002 Pathogen induced ... 848 0.0
gb|CX616334.1|CX616334 GABR1_27_G06.b1_A002 GA- or brassino... 833 0.0
gb|CD232053.1|CD232053 SS1_31_B03.g1_A012 Salt-stressed see... 823 0.0
gb|AW678984.1|AW678984 WS1_21_E05.g1_A002 Water-stressed 1 ... 801 0.0
gb|BE363844.1|BE363844 WS1_71_H07.g2_A002 Water-stressed 1 ... 763 0.0
gb|BE600297.1|BE600297 PI1_94_F10.g1_A002 Pathogen induced ... 729 0.0
gb|CF486980.1|CF486980 POL1_41_B06.b1_A002 Pollen Sorghum b... 708 0.0
gb|CF486193.1|CF486193 POL1_36_G01.b1_A002 Pollen Sorghum b... 656 0.0
gb|CN146627.1|CN146627 WOUND1_42_C10.g1_A002 Wounded leaves... 599 e-169
gb|CF486277.1|CF486277 POL1_36_G01.g1_A002 Pollen Sorghum b... 597 e-169
gb|BG240485.1|BG240485 OV1_30_F04.b1_A002 Ovary 1 (OV1) Sor... 585 e-165
gb|CW365606.1|CW365606 fsbb001f038d13k0 Sorghum methylation... 567 e-160
gb|CW275294.1|CW275294 104_748_11404885_116_35380_055 Sorgh... 359 2e-097
gb|CL173358.1|CL173358 104_376_10890821_148_31794_341 Sorgh... 246 2e-063
gb|AI724834.1|AI724834 RHIZ1_9_G08.y2_A001 Rhizome1 (RHIZ1)... 167 2e-039
gb|CW275295.1|CW275295 104_748_11404885_148_35384_055 Sorgh... 96 5e-018
gb|CW159605.1|CW159605 104_565_11149446_116_36406_017 Sorgh... 54 2e-005
gb|CL174912.1|CL174912 104_379_10892002_148_31768_370 Sorgh... 40 0.27
gb|CF489837.1|CF489837 POL1_59_H09.g1_A002 Pollen Sorghum b... 40 0.27
gb|CN135018.1|CN135018 OX1_30_C01.b1_A002 Oxidatively-stres... 40 0.27
>gb|CL173357.1|CL173357 104_376_10890821_116_31795_341 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890821, DNA
sequence
Length = 746
Score = 952 bits (480), Expect = 0.0
Identities = 599/636 (94%), Gaps = 2/636 (0%)
Strand = Plus / Minus
Query: 39 cggcggcggcgatgacaacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccg 98
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cggcggcggcgatgacgacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccg 624
Query: 99 ccgggcacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtg 158
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 623 ccgggcacggccgtatcggcaagcaccggaagcacccgggaggtcgcggtaacgccggtg 564
Query: 159 gcatgcaccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttg 218
|||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |
Sbjct: 563 gcatgcaccaccaccgcatcctcttcgacaagtaccatcctggttacttcggcaaggtcg 504
Query: 219 gcatgcgttacttccataagctccgcaacaagttctactgccccgcggtcaacatcgagc 278
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gcatgcgttacttccacaagctccgcaacaagttctactgccccgcggtcaacatcgagc 444
Query: 279 gcctctggtcgatggtgcccaccgacaaggcggcggaggccggcggcgacaaggccccgc 338
|||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 443 gcctctggtccatggtgcccgccgacaaggcggctgaggccggcggcgacaaggccccgc 384
Query: 339 agatcgacgtcacgcagttcggctacttcaaggtgctcgggaagggggtgctgccgccaa 398
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 383 agatcgatgtcacgcagttcggctacttcaaggtgctcgggaagggggtgctgccgccca 324
Query: 399 agcccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcag 458
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 323 agcccatcgtggtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggccg 264
Query: 459 caggcggcgccgtcgtgctcaccgcctaggtttcagtccttgttcgcctcctggttttga 518
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 263 ccggcggcgccgtcgtgctcaccgcctaggtttcagtccttgttcgcctcttggttttga 204
Query: 519 aatctatatctgaactgatagtgctttcctgtctcggcaatttgtgttaagaaaacctgt 578
||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||
Sbjct: 203 gatctatatctgaactagtagtgctttcctgtctcagctatttgtgttaagaagacctgt 144
Query: 579 agttttaaaatatgtggttcctgcctgtttgg-cagtgc-ttatgcggtttttgatgcca 636
|||||| |||| ||||| | ||||||||| || |||||| ||||| || |||||||||||
Sbjct: 143 agtttttaaatctgtggctgctgcctgttgggacagtgctttatgaggattttgatgcca 84
Query: 637 gttcatatcaaatatttcacatcaattaaatctatc 672
||||||||||||||||||| || |||||| |||||
Sbjct: 83 gttcatatcaaatatttcagatatattaaagctatc 48
>gb|CX616425.1|CX616425 GABR1_27_G06.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_27_G06_A002 5', mRNA sequence
Length = 710
Score = 944 bits (476), Expect = 0.0
Identities = 598/636 (94%), Gaps = 2/636 (0%)
Strand = Plus / Plus
Query: 39 cggcggcggcgatgacaacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccg 98
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 cggcggcggcgatgacgacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccg 108
Query: 99 ccgggcacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtg 158
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 109 ccgggcacggccgtatcggcaagcaccggaagcacccgggaggtcgcggtaacgccggtg 168
Query: 159 gcatgcaccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttg 218
|||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |
Sbjct: 169 gcatgcaccaccaccgcatcctcttcgacaagtaccatcctggttacttcggcaaggtcg 228
Query: 219 gcatgcgttacttccataagctccgcaacaagttctactgccccgcggtcaacatcgagc 278
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 gcatgcgttacttccacaagctccgcaacaagttctactgccccgcggtcaacatcgagc 288
Query: 279 gcctctggtcgatggtgcccaccgacaaggcggcggaggccggcggcgacaaggccccgc 338
|||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 289 gcctctggtccatggtgcccgccgacaaggcggctgaggccggcggcgacaaggccccgc 348
Query: 339 agatcgacgtcacgcagttcggctacttcaaggtgctcgggaagggggtgctgccgccaa 398
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 349 agatcgatgccacgcagttcggctacttcaaggtgctcgggaagggggtgctgccgccca 408
Query: 399 agcccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcag 458
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 409 agcccatcgtggtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggccg 468
Query: 459 caggcggcgccgtcgtgctcaccgcctaggtttcagtccttgttcgcctcctggttttga 518
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 469 ccggcggcgccgtcgtgctcaccgcctaggtttcagtccttgttcgcctcttggttttga 528
Query: 519 aatctatatctgaactgatagtgctttcctgtctcggcaatttgtgttaagaaaacctgt 578
||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||
Sbjct: 529 gatctatatctgaactagtagtgctttcctgtctcagctatttgtgttaagaagacctgt 588
Query: 579 agttttaaaatatgtggttcctgcctgtttgg-cagtgc-ttatgcggtttttgatgcca 636
|||||| |||| ||||| | ||||||||| || |||||| ||||| || |||||||||||
Sbjct: 589 agtttttaaatctgtggctgctgcctgttgggacagtgctttatgaggattttgatgcca 648
Query: 637 gttcatatcaaatatttcacatcaattaaatctatc 672
||||||||||||||||||| || |||||| |||||
Sbjct: 649 gttcatatcaaatatttcagatatattaaagctatc 684
>gb|AW678009.1|AW678009 WS1_12_F02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 605
Score = 916 bits (462), Expect = 0.0
Identities = 568/601 (94%), Gaps = 2/601 (0%)
Strand = Plus / Plus
Query: 51 tgacaacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccgccgggcacggcc 110
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgacnacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccgccgggcacggcc 60
Query: 111 gcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatgcaccacc 170
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtatcggcaagcaccggaagcacccgggaggtcgcggtaacgccggtggcatgcaccacc 120
Query: 171 accgtatcctcttcgacaagtaccatccgggctacttcggcaaggttggcatgcgttact 230
|||| ||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct: 121 accgcatcctcttcgacaagtaccatcctggttacttcggcaaggtcggcatgcgttact 180
Query: 231 tccataagctccgcaacaagttctactgccccgcggtcaacatcgagcgcctctggtcga 290
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 181 tccacaagctccgcaacaagttctactgccccgcggtcaacatcgagcgcctctggtcca 240
Query: 291 tggtgcccaccgacaaggcggcggaggccggcggcgacaaggccccgcagatcgacgtca 350
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 241 tggtgcccgccgacaaggcggctgaggccggcggcgacaaggccccgcagatcgatgtca 300
Query: 351 cgcagttcggctacttcaaggtgctcgggaagggggtgctgccgccaaagcccattgtcg 410
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct: 301 cgcagttcggctacttcaaggtgctcgggaagggggtgctgccgcccaagcccatcgtgg 360
Query: 411 tcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagcaggcggcgccg 470
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 361 tcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggccgccggcggcgccg 420
Query: 471 tcgtgctcaccgcctaggtttcagtccttgttcgcctcctggttttgaaatctatatctg 530
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 421 tcgtgctcaccgcctaggtttcagtccttgttcgcctcttggttttgagatctatatctg 480
Query: 531 aactgatagtgctttcctgtctcggcaatttgtgttaagaaaacctgtagttttaaaata 590
|||| ||||||||||||||||| || |||||||||||||| |||||||||||| ||||
Sbjct: 481 aactagtagtgctttcctgtctcagctatttgtgttaagaagacctgtagtttttaaatc 540
Query: 591 tgtggttcctgcctgtttgg-cagtgc-ttatgcggtttttgatgccagttcatatcaaa 648
||||| | ||||||||| || |||||| ||||| || |||||||||||||||||||||||
Sbjct: 541 tgtggctgctgcctgttgggacagtgctttatgaggattttgatgccagttcatatcaaa 600
Query: 649 t 649
|
Sbjct: 601 t 601
>gb|CW159606.1|CW159606 104_565_11149446_148_36405_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149446, DNA
sequence
Length = 723
Score = 908 bits (458), Expect = 0.0
Identities = 574/610 (94%), Gaps = 2/610 (0%)
Strand = Plus / Plus
Query: 65 aagaagaaccgcaagaagcgcggccacgtgtccgccgggcacggccgcatcggcaagcac 124
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 aagaagaaccgcaagaagcgcggccacgtgtccgccgggcacggccgtatcggcaagcac 60
Query: 125 aggaagcacccgggaggtcgcggtaacgccggtggcatgcaccaccaccgtatcctcttc 184
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 61 cggaagcacccgggaggtcgcggtaacgccggtggcatgcaccaccaccgcatcctcttc 120
Query: 185 gacaagtaccatccgggctacttcggcaaggttggcatgcgttacttccataagctccgc 244
|||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 121 gacaagtaccatcctggttacttcggcaaggtcggcatgcgttacttccacaagctccgc 180
Query: 245 aacaagttctactgccccgcggtcaacatcgagcgcctctggtcgatggtgcccaccgac 304
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 181 aacaagttctactgccccgcggtcaacatcgagcgcctctggtccatggtgcccgccgac 240
Query: 305 aaggcggcggaggccggcggcgacaaggccccgcagatcgacgtcacgcagttcggctac 364
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 241 aaggcggctgaggccggcggcgacaaggccccgcagatcgatgtcacgcagttcggctac 300
Query: 365 ttcaaggtgctcgggaagggggtgctgccgccaaagcccattgtcgtcaaggccaagctc 424
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct: 301 ttcaaggtgctcgggaagggggtgctgccgcccaagcccatcgtggtcaaggccaagctc 360
Query: 425 atctccaaggtcgccgagaagaagatcaaggcagcaggcggcgccgtcgtgctcaccgcc 484
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 361 atctccaaggtcgccgagaagaagatcaaggccgccggcggcgccgtcgtgctcaccgcc 420
Query: 485 taggtttcagtccttgttcgcctcctggttttgaaatctatatctgaactgatagtgctt 544
|||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||
Sbjct: 421 taggtttcagtccttgttcgcctcttggttttgagatctatatctgaactagtagtgctt 480
Query: 545 tcctgtctcggcaatttgtgttaagaaaacctgtagttttaaaatatgtggttcctgcct 604
||||||||| || |||||||||||||| |||||||||||| |||| ||||| | ||||||
Sbjct: 481 tcctgtctcagctatttgtgttaagaagacctgtagtttttaaatctgtggctgctgcct 540
Query: 605 gtttgg-cagtgc-ttatgcggtttttgatgccagttcatatcaaatatttcacatcaat 662
||| || |||||| ||||| || |||||||||||||||||||||||||||||| || ||
Sbjct: 541 gttgggacagtgctttatgaggattttgatgccagttcatatcaaatatttcagatatat 600
Query: 663 taaatctatc 672
|||| |||||
Sbjct: 601 taaagctatc 610
>gb|CN146570.1|CN146570 WOUND1_42_C10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_42_C10_A002 3', mRNA sequence
Length = 688
Score = 902 bits (455), Expect = 0.0
Identities = 580/619 (93%), Gaps = 2/619 (0%)
Strand = Plus / Plus
Query: 39 cggcggcggcgatgacaacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccg 98
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 cggcggcggcgatgacgacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccg 126
Query: 99 ccgggcacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtg 158
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 127 ccgggcacggccgtatcggcaagcaccggaagcacccgggaggtcgcggtaacgccggtg 186
Query: 159 gcatgcaccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttg 218
|||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||| |
Sbjct: 187 gcatgcaccaccaccgcatccttttcgacaagtaccatcctggttacttcggcaaggtcg 246
Query: 219 gcatgcgttacttccataagctccgcaacaagttctactgccccgcggtcaacatcgagc 278
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gcatgcgttacttccacaagctccgcaacaagttctactgccccgcggtcaacatcgagc 306
Query: 279 gcctctggtcgatggtgcccaccgacaaggcggcggaggccggcggcgacaaggccccgc 338
||| |||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 307 gcccctggtccatggtgcccgccgacaaggcggctgaggccggcggcgacaaggccccgc 366
Query: 339 agatcgacgtcacgcagttcggctacttcaaggtgctcgggaagggggtgctgccgccaa 398
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 367 agatcgatgtcacgcagttcggctacttcaaggtgctcgggaagggggtgctgccgccca 426
Query: 399 agcccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcag 458
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 427 agcccatcgtggtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggccg 486
Query: 459 caggcggcgccgtcgtgctcaccgcctaggtttcagtccttgttcgcctcctggttttga 518
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 487 ccggcggcgccgtcgtgctcaccgcctaggtttcagtccttgttcgcctcttggttttga 546
Query: 519 aatctatatctgaactgatagtgctttcctgtctcggcaatttgtgttaagaaaacctgt 578
||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||
Sbjct: 547 gatctatatctgaactagtagtgctttcctgtctcagctatttgtgttaagaagacctgt 606
Query: 579 agttttaaaatatgtggttcctgcctgtttgg-cagtgc-ttatgcggtttttgatgcca 636
| ||| |||| ||||| | ||||||||| || |||||| ||| || |||||||||||
Sbjct: 607 aaattttaaatctgtggctgctgcctgttgggacagtgctttaaaaggattttgatgcca 666
Query: 637 gttcatatcaaatatttca 655
|||||||||||||||||||
Sbjct: 667 gttcatatcaaatatttca 685
>gb|AW924657.1|AW924657 WS1_71_H07.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 566
Score = 856 bits (432), Expect = 0.0
Identities = 501/524 (95%)
Strand = Plus / Plus
Query: 39 cggcggcggcgatgacaacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccg 98
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 cggcggcggcgatgacgacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccg 102
Query: 99 ccgggcacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtg 158
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 103 ccgggcacggccgtatcggcaagcaccggaagcacccgggaggtcgcggtaacgccggtg 162
Query: 159 gcatgcaccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttg 218
|||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |
Sbjct: 163 gcatgcaccaccaccgcatcctcttcgacaagtaccatcctggttacttcggcaaggtcg 222
Query: 219 gcatgcgttacttccataagctccgcaacaagttctactgccccgcggtcaacatcgagc 278
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 gcatgcgttacttccacaagctccgcaacaagttctactgccccgcggtcaacatcgagc 282
Query: 279 gcctctggtcgatggtgcccaccgacaaggcggcggaggccggcggcgacaaggccccgc 338
|||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 283 gcctctggtccatggtgcccgccgacaaggcggctgaggccggcggcgacaaggccccgc 342
Query: 339 agatcgacgtcacgcagttcggctacttcaaggtgctcgggaagggggtgctgccgccaa 398
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 343 agatcgatgtcacgcagttcggctacttcaaggtgctcgggaagggggtgctgccgccca 402
Query: 399 agcccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcag 458
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 403 agcccatcgtggtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggccg 462
Query: 459 caggcggcgccgtcgtgctcaccgcctaggtttcagtccttgttcgcctcctggttttga 518
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 463 ccggcggcgccgtcgtgctcaccgcctaggtttcagtccttgttcgcctcttggttttga 522
Query: 519 aatctatatctgaactgatagtgctttcctgtctcggcaatttg 562
||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 523 gatctatatctgaactagtagtgctttcctgtctcagctatttg 566
>gb|BE600562.1|BE600562 PI1_94_F10.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 572
Score = 848 bits (428), Expect = 0.0
Identities = 491/512 (95%)
Strand = Plus / Plus
Query: 39 cggcggcggcgatgacaacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccg 98
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cggcggcggcgatgacgacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccg 120
Query: 99 ccgggcacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtg 158
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 121 ccgggcacggccgtatcggcaagcaccggaagcacccgggaggtcgcggtaacgccggtg 180
Query: 159 gcatgcaccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttg 218
|||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |
Sbjct: 181 gcatgcaccaccaccgcatcctcttcgacaagtaccatcctggttacttcggcaaggtcg 240
Query: 219 gcatgcgttacttccataagctccgcaacaagttctactgccccgcggtcaacatcgagc 278
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gcatgcgttacttccacaagctccgcaacaagttctactgccccgcggtcaacatcgagc 300
Query: 279 gcctctggtcgatggtgcccaccgacaaggcggcggaggccggcggcgacaaggccccgc 338
|||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 301 gcctctggtccatggtgcccgccgacaaggcggctgaggccggcggcgacaaggccccgc 360
Query: 339 agatcgacgtcacgcagttcggctacttcaaggtgctcgggaagggggtgctgccgccaa 398
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 361 agatcgatgtcacgcagttcggctacttcaaggtgctcgggaagggggtgctgccgccca 420
Query: 399 agcccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcag 458
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 421 agcccatcgtggtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggccg 480
Query: 459 caggcggcgccgtcgtgctcaccgcctaggtttcagtccttgttcgcctcctggttttga 518
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 481 ccggcggcgccgtcgtgctcaccgcctaggtttcagtccttgttcgcctcttggttttga 540
Query: 519 aatctatatctgaactgatagtgctttcctgt 550
||||||||||||||| ||||||||||||||
Sbjct: 541 gatctatatctgaactagtagtgctttcctgt 572
>gb|CX616334.1|CX616334 GABR1_27_G06.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_27_G06_A002 3', mRNA sequence
Length = 586
Score = 833 bits (420), Expect = 0.0
Identities = 542/580 (93%), Gaps = 2/580 (0%)
Strand = Plus / Plus
Query: 95 tccgccgggcacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgcc 154
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 tccgccgggcacggccgtatcggcaagcaccggaagcacccgggaggtcgcggtaacgcc 60
Query: 155 ggtggcatgcaccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaag 214
|||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||
Sbjct: 61 ggtggcatgcaccaccaccgcatccttttcgacaagtaccatcctggttacttcggcaag 120
Query: 215 gttggcatgcgttacttccataagctccgcaacaagttctactgccccgcggtcaacatc 274
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcggcatgcgttacttccacaagctccgcaacaagttctactgccccgcggtcaacatc 180
Query: 275 gagcgcctctggtcgatggtgcccaccgacaaggcggcggaggccggcggcgacaaggcc 334
|||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 181 gagcgcctctggtccatggtgcccgccgacaaggcggctgaggccggcggcgacaaggcc 240
Query: 335 ccgcagatcgacgtcacgcagttcggctacttcaaggtgctcgggaagggggtgctgccg 394
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccgcagatcgatgccacgcagttcggctacttcaaggtgctcgggaagggggtgctgccg 300
Query: 395 ccaaagcccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaag 454
|| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cccaagcccatcgtggtcaaggccaagctcatctccaaggtcgccgagaagaagatcaag 360
Query: 455 gcagcaggcggcgccgtcgtgctcaccgcctaggtttcagtccttgttcgcctcctggtt 514
|| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 361 gccgccggcggcgccgtcgtgctcaccgcctaggtttcagtccttgttcgcctcttggtt 420
Query: 515 ttgaaatctatatctgaactgatagtgctttcctgtctcggcaatttgtgttaagaaaac 574
|||| ||||||||||||||| ||||||||||||||||| || |||||||||||||| ||
Sbjct: 421 ttgagatctatatctgaactagtagtgctttcctgtctcagctatttgtgttaagaagac 480
Query: 575 ctgtagttttaaaatatgtggttcctgcctgtttgg-cagtgc-ttatgcggtttttgat 632
|||||||||| |||| ||||| | ||||||||| || |||||| ||||| || |||||||
Sbjct: 481 ctgtagtttttaaatctgtggctgctgcctgttgggacagtgctttatgaggattttgat 540
Query: 633 gccagttcatatcaaatatttcacatcaattaaatctatc 672
||||||||||||||||||||||| || |||||| |||||
Sbjct: 541 gccagttcatatcaaatatttcagatatattaaagctatc 580
>gb|CD232053.1|CD232053 SS1_31_B03.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_31_B03_A012 5', mRNA sequence
Length = 582
Score = 823 bits (415), Expect = 0.0
Identities = 486/510 (95%)
Strand = Plus / Plus
Query: 39 cggcggcggcgatgacaacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccg 98
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cggcggcggcgatgacgacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccg 132
Query: 99 ccgggcacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtg 158
||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 133 ccgggcacggccgtatcggcaagcaccgaaagcacccgggaggtcgcggtaacgccggtg 192
Query: 159 gcatgcaccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttg 218
|||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |
Sbjct: 193 gcatgcaccaccaccgcatcctcttcgacaagtaccatcctggttacttcggcaaggtcg 252
Query: 219 gcatgcgttacttccataagctccgcaacaagttctactgccccgcggtcaacatcgagc 278
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gcatgcgttacttccacaagctccgcaacaagttctactgccccgcggtcaacatcgagc 312
Query: 279 gcctctggtcgatggtgcccaccgacaaggcggcggaggccggcggcgacaaggccccgc 338
|||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 313 gcctctggtccatggtgcccgccgacaaggcggctgaggccggcggcgacaaggccccgc 372
Query: 339 agatcgacgtcacgcagttcggctacttcaaggtgctcgggaagggggtgctgccgccaa 398
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 373 agatcgatgtcacgcagttcggctacttcaaggtgctcgggaagggggtgctgccgccca 432
Query: 399 agcccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcag 458
||||||| || ||||||||||||||||||||||||| |||||| |||||||||||||| |
Sbjct: 433 agcccatcgtggtcaaggccaagctcatctccaagggcgccganaagaagatcaaggccg 492
Query: 459 caggcggcgccgtcgtgctcaccgcctaggtttcagtccttgttcgcctcctggttttga 518
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 493 ccggcggcgccgtcgtgctcaccgcctaggtttcagtccttgttcgcctcttggttttga 552
Query: 519 aatctatatctgaactgatagtgctttcct 548
||||||||||||||| ||||||||||||
Sbjct: 553 gatctatatctgaactagtagtgctttcct 582
>gb|AW678984.1|AW678984 WS1_21_E05.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 573
Score = 801 bits (404), Expect = 0.0
Identities = 511/544 (93%), Gaps = 2/544 (0%)
Strand = Plus / Plus
Query: 108 gccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggcatgcacc 167
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccgtatcggcaagcaccggaagcacccgggaggtcgcggtaacgccggtggcatgcacc 60
Query: 168 accaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttggcatgcgtt 227
||||||| ||||| ||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct: 61 accaccgcatccttttcgacaagtaccatcctggttacttcggcaaggtcggcatgcgtt 120
Query: 228 acttccataagctccgcaacaagttctactgccccgcggtcaacatcgagcgcctctggt 287
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acttccacaagctccgcaacaagttctactgccccgcggtcaacatcgagcgcctctggt 180
Query: 288 cgatggtgcccaccgacaaggcggcggaggccggcggcgacaaggccccgcagatcgacg 347
| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 181 ccatggtgcccgccgacaaggcggctgaggccggcggcgacaaggccccgcagatcgatg 240
Query: 348 tcacgcagttcggctacttcaaggtgctcgggaagggggtgctgccgccaaagcccattg 407
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 241 tcacgcagttcggctacttcaaggtgctcgggaagggggtgctgccgcccaagcccatcg 300
Query: 408 tcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagcaggcggcg 467
| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 301 tggtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggccgccggcggcg 360
Query: 468 ccgtcgtgctcaccgcctaggtttcagtccttgttcgcctcctggttttgaaatctatat 527
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 361 ccgtcgtgctcaccgcctaggtttcagtccttgttcgcctcttggttttgagatctatat 420
Query: 528 ctgaactgatagtgctttcctgtctcggcaatttgtgttaagaaaacctgtagttttaaa 587
||||||| ||||||||||||||||| || |||||||||||||| |||||||||||| ||
Sbjct: 421 ctgaactagtagtgctttcctgtctcagctatttgtgttaagaagacctgtagtttttaa 480
Query: 588 atatgtggttcctgcctgtttgg-cagtgc-ttatgcggtttttgatgccagttcatatc 645
|| ||||| | ||||||||| || |||||| ||||| || ||||||||||||||||||||
Sbjct: 481 atctgtggctgctgcctgttgggacagtgctttatgaggattttgatgccagttcatatc 540
Query: 646 aaat 649
||||
Sbjct: 541 aaat 544
>gb|BE363844.1|BE363844 WS1_71_H07.g2_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 500
Score = 763 bits (385), Expect = 0.0
Identities = 436/453 (96%)
Strand = Plus / Plus
Query: 39 cggcggcggcgatgacaacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccg 98
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 cggcggcggcgatgacgacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccg 100
Query: 99 ccgggcacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtg 158
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 101 ccgggcacggccgtatcggcaagcaccggaagcacccgggaggtcgcggtaacgccggtg 160
Query: 159 gcatgcaccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttg 218
|||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |
Sbjct: 161 gcatgcaccaccaccgcatcctcttcgacaagtaccatcctggttacttcggcaaggtcg 220
Query: 219 gcatgcgttacttccataagctccgcaacaagttctactgccccgcggtcaacatcgagc 278
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 gcatgcgttacttccacaagctccgcaacaagttctactgccccgcggtcaacatcgagc 280
Query: 279 gcctctggtcgatggtgcccaccgacaaggcggcggaggccggcggcgacaaggccccgc 338
|||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 281 gcctctggtccatggtgcccgccgacaaggcggctgaggccggcggcgacaaggccccgc 340
Query: 339 agatcgacgtcacgcagttcggctacttcaaggtgctcgggaagggggtgctgccgccaa 398
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 341 agatcgatgtcacgcagttcggctacttcaaggtgctcgggaagggggtgctgccgccca 400
Query: 399 agcccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcag 458
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 401 agcccatcgtggtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggccg 460
Query: 459 caggcggcgccgtcgtgctcaccgcctaggttt 491
| |||||||||||||||||||||||||||||||
Sbjct: 461 ccggcggcgccgtcgtgctcaccgcctaggttt 493
>gb|BE600297.1|BE600297 PI1_94_F10.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 451
Score = 729 bits (368), Expect = 0.0
Identities = 425/444 (95%)
Strand = Plus / Plus
Query: 39 cggcggcggcgatgacaacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccg 98
||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggcgccgccgatgacgacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccg 60
Query: 99 ccgggcacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtg 158
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61 ccgggcacggccgtatcggcaagcaccggaagcacccgggaggtcgcggtaacgccggtg 120
Query: 159 gcatgcaccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttg 218
|||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |
Sbjct: 121 gcatgcaccaccaccgcatcctcttcgacaagtaccatcctggttacttcggcaaggtcg 180
Query: 219 gcatgcgttacttccataagctccgcaacaagttctactgccccgcggtcaacatcgagc 278
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gcatgcgttacttccacaagctccgcaacaagttctactgccccgcggtcaacatcgagc 240
Query: 279 gcctctggtcgatggtgcccaccgacaaggcggcggaggccggcggcgacaaggccccgc 338
|||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 241 gcctctggtccatggtgcccgccgacaaggcggctgaggccggcggcgacaaggccccgc 300
Query: 339 agatcgacgtcacgcagttcggctacttcaaggtgctcgggaagggggtgctgccgccaa 398
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 301 agatcgatgtcacgcagttcggctacttcaaggtgctcgggaagggggtgctgccgccca 360
Query: 399 agcccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcag 458
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 361 agcccatcgtggtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggccg 420
Query: 459 caggcggcgccgtcgtgctcaccg 482
| ||||||||||||||||||||||
Sbjct: 421 ccggcggcgccgtcgtgctcaccg 444
>gb|CF486980.1|CF486980 POL1_41_B06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_41_B06_A002 3', mRNA sequence
Length = 601
Score = 708 bits (357), Expect = 0.0
Identities = 455/485 (93%), Gaps = 2/485 (0%)
Strand = Plus / Plus
Query: 167 caccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttggcatgcgt 226
|||||||| ||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct: 109 caccaccgcatcctcttcgacaagtaccatcctggttacttcggcaaggtcggcatgcgt 168
Query: 227 tacttccataagctccgcaacaagttctactgccccgcggtcaacatcgagcgcctctgg 286
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tacttccacaagctccgcaacaagttctactgccccgcggtcaacatcgagcgcctctgg 228
Query: 287 tcgatggtgcccaccgacaaggcggcggaggccggcggcgacaaggccccgcagatcgac 346
|| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 229 tccatggtgcccgccgacaaggcggctgaggccggcggcgacaaggccccgcagatcgat 288
Query: 347 gtcacgcagttcggctacttcaaggtgctcgggaagggggtgctgccgccaaagcccatt 406
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 289 gtcacgcagttcggctacttcaaggtgctcgggaagggggtgctgccgcccaagcccatc 348
Query: 407 gtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggcagcaggcggc 466
|| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 349 gtggtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggccgccggcggc 408
Query: 467 gccgtcgtgctcaccgcctaggtttcagtccttgttcgcctcctggttttgaaatctata 526
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 409 gccgtcgtgctcaccgcctaggtttcagtccttgttcgcctcttggttttgagatctata 468
Query: 527 tctgaactgatagtgctttcctgtctcggcaatttgtgttaagaaaacctgtagttttaa 586
|||||||| ||||||||||||||||| || |||||||||||||| |||||||||||| |
Sbjct: 469 tctgaactagtagtgctttcctgtctcagctatttgtgttaagaagacctgtagttttta 528
Query: 587 aatatgtggttcctgcctgtttgg-cagtgc-ttatgcggtttttgatgccagttcatat 644
||| ||||| | ||||||||| || |||||| ||||| || |||||||||||||||||||
Sbjct: 529 aatctgtggctgctgcctgttgggacagtgctttatgaggattttgatgccagttcatat 588
Query: 645 caaat 649
|||||
Sbjct: 589 caaat 593
>gb|CF486193.1|CF486193 POL1_36_G01.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_36_G01_A002 3', mRNA sequence
Length = 472
Score = 656 bits (331), Expect = 0.0
Identities = 426/455 (93%), Gaps = 2/455 (0%)
Strand = Plus / Plus
Query: 203 tacttcggcaaggttggcatgcgttacttccataagctccgcaacaagttctactgcccc 262
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 4 tacttcggcaaggtcggcatgcgttacttccacaagctccgcaacaagttctactgcccc 63
Query: 263 gcggtcaacatcgagcgcctctggtcgatggtgcccaccgacaaggcggcggaggccggc 322
|||||||||||||||| ||||||||| ||||||||| ||||||||||||| |||||||||
Sbjct: 64 gcggtcaacatcgagcccctctggtccatggtgcccgccgacaaggcggctgaggccggc 123
Query: 323 ggcgacaaggccccgcagatcgacgtcacgcagttcggctacttcaaggtgctcgggaag 382
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 124 ggcgacaaggccccgcagatcgatgtcacgcagttcggctacttcaaggtgctcgggaag 183
Query: 383 ggggtgctgccgccaaagcccattgtcgtcaaggccaagctcatctccaaggtcgccgag 442
|||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 184 ggggtgctgccgcccaagcccatcgtggtcaaggccaagctcatctccaaggtcgccgag 243
Query: 443 aagaagatcaaggcagcaggcggcgccgtcgtgctcaccgcctaggtttcagtccttgtt 502
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aagaagatcaaggccgccggcggcgccgtcgtgctcaccgcctaggtttcagtccttgtt 303
Query: 503 cgcctcctggttttgaaatctatatctgaactgatagtgctttcctgtctcggcaatttg 562
|||||| ||||||||| ||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 304 cgcctcttggttttgagatctatatctgaactagtagtgctttcctgtctcagctatttg 363
Query: 563 tgttaagaaaacctgtagttttaaaatatgtggttcctgcctgtttgg-cagtgc-ttat 620
||||||||| ||||||||||| |||| ||||| | ||||||||| || |||||| ||||
Sbjct: 364 tgttaagaagccctgtagtttttaaatctgtggctgctgcctgttgggacagtgctttat 423
Query: 621 gcggtttttgatgccagttcatatcaaatatttca 655
| || ||||||||||||||||||||||||||||||
Sbjct: 424 gaggattttgatgccagttcatatcaaatatttca 458
>gb|CN146627.1|CN146627 WOUND1_42_C10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_42_C10_A002 5', mRNA sequence
Length = 379
Score = 599 bits (302), Expect = e-169
Identities = 344/358 (96%)
Strand = Plus / Plus
Query: 39 cggcggcggcgatgacaacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccg 98
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22 cggcggcggcgatgacgacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccg 81
Query: 99 ccgggcacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtg 158
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 82 ccgggcacggccgtatcggcaagcaccggaagcacccgggaggtcgcggtaacgccggtg 141
Query: 159 gcatgcaccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttg 218
|||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |
Sbjct: 142 gcatgcaccaccaccgcatcctcttcgacaagtaccatcctggttacttcggcaaggtcg 201
Query: 219 gcatgcgttacttccataagctccgcaacaagttctactgccccgcggtcaacatcgagc 278
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 202 gcatgcgttacttccacaagctccgcaacgagttctactgccccgcggtcaacatcgagc 261
Query: 279 gcctctggtcgatggtgcccaccgacaaggcggcggaggccggcggcgacaaggccccgc 338
||| |||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 262 gcccctggtccatggtgcccgccgacaaggcggctgaggccggcggcgacaaggccccgc 321
Query: 339 agatcgacgtcacgcagttcggctacttcaaggtgctcgggaagggggtgctgccgcc 396
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agatcgatgtcacgcagttcggctacttcaaggtgctcgggaagggggtgctgccgcc 379
>gb|CF486277.1|CF486277 POL1_36_G01.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_36_G01_A002 5', mRNA sequence
Length = 417
Score = 597 bits (301), Expect = e-169
Identities = 340/353 (96%)
Strand = Plus / Plus
Query: 39 cggcggcggcgatgacaacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccg 98
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cggcggcggcgatgacgacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccg 124
Query: 99 ccgggcacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtg 158
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 125 ccgggcacggccgtatcggcaagcaccggaagcacccgggaggtcgcggtaacgccggtg 184
Query: 159 gcatgcaccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttg 218
|||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |
Sbjct: 185 gcatgcaccaccaccgcatcctcttcgacaagtaccatcctggttacttcggcaaggtcg 244
Query: 219 gcatgcgttacttccataagctccgcaacaagttctactgccccgcggtcaacatcgagc 278
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gcatgcgttacttccacaagctccgcaacaagttctactgccccgcggtcaacatcgagc 304
Query: 279 gcctctggtcgatggtgcccaccgacaaggcggcggaggccggcggcgacaaggccccgc 338
|||||||||| ||||||||| ||||||||||||| |||| ||||||||||||||||||||
Sbjct: 305 gcctctggtccatggtgcccgccgacaaggcggctgaggtcggcggcgacaaggccccgc 364
Query: 339 agatcgacgtcacgcagttcggctacttcaaggtgctcgggaagggggtgctg 391
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agatcgatgtcacgcagttcggctacttcaaggtgctcgggaagggggtgctg 417
>gb|BG240485.1|BG240485 OV1_30_F04.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 397
Score = 585 bits (295), Expect = e-165
Identities = 331/343 (96%)
Strand = Plus / Plus
Query: 39 cggcggcggcgatgacaacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccg 98
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 cggcggcggcgatgacgacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccg 111
Query: 99 ccgggcacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtg 158
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 112 ccgggcacggccgtatcggcaagcaccggaagcacccgggaggtcgcggtaacgccggtg 171
Query: 159 gcatgcaccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttg 218
|||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |
Sbjct: 172 gcatgcaccaccaccgcatcctcttcgacaagtaccatcctggttacttcggcaaggtcg 231
Query: 219 gcatgcgttacttccataagctccgcaacaagttctactgccccgcggtcaacatcgagc 278
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 gcatgcgttacttccacaagctccgcaacaagttctactgccccgcggtcaacatcgagc 291
Query: 279 gcctctggtcgatggtgcccaccgacaaggcggcggaggccggcggcgacaaggccccgc 338
|||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 292 gcctctggtccatggtgcccgccgacaaggcggctgaggccggcggcgacaaggccccgc 351
Query: 339 agatcgacgtcacgcagttcggctacttcaaggtgctcgggaa 381
||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 352 agatcgatgtcacgcagttcggctacttcaaggtgctcgggaa 394
>gb|CW365606.1|CW365606 fsbb001f038d13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f038d13, DNA
sequence
Length = 537
Score = 567 bits (286), Expect = e-160
Identities = 411/452 (90%), Gaps = 3/452 (0%)
Strand = Plus / Minus
Query: 41 gcggcggcgatgacaacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccgcc 100
|||||||||||||| ||| || | ||||||||||| ||||||||||| |||||||| ||
Sbjct: 488 gcggcggcgatgacgacgagcctgaagaagaaccggaagaagcgcggtcacgtgtcggcg 429
Query: 101 gggcacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggc 160
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||
Sbjct: 428 gggcacggccgcatcggcaagcaccggaagcaccctggaggtcgcggtaacgccggaggc 369
Query: 161 atgcaccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttggc 220
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 368 atgcaccaccaccgcatcctcttcgacaagtaccacccgggctacttcggcaaggtcggc 309
Query: 221 atgcgttacttccataagctccgcaacaagttctactgccccgcggtcaacatcgagcgc 280
||||| |||||||| ||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 308 atgcgctacttccacaagctccgcaacaagttctactgcccctcggtcaacgtcgagcgg 249
Query: 281 ctctggtcgatggtgcccaccgacaag---gcggcggaggccggcggcgacaaggccccg 337
|||||||||||||||||| |||||||| || | || |||||| |||||||||||||||
Sbjct: 248 ctctggtcgatggtgcccgccgacaaggtcgccgaggcggccggtggcgacaaggccccg 189
Query: 338 cagatcgacgtcacgcagttcggctacttcaaggtgctcgggaagggggtgctgccgcca 397
| | ||||| ||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 188 ctcctggacgtgacgcagttcggctacttcaaggtgctcggcaaggggatgctgccgccc 129
Query: 398 aagcccattgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggca 457
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 aagcccatcgtcgtcaaggccaagctcatctccaaggtcgccgagaagaagatcaaggct 69
Query: 458 gcaggcggcgccgtcgtgctcaccgcctaggt 489
|| || ||||||||| |||||||||| |||||
Sbjct: 68 gctggaggcgccgtcctgctcaccgcataggt 37
>gb|CW275294.1|CW275294 104_748_11404885_116_35380_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404885, DNA
sequence
Length = 668
Score = 359 bits (181), Expect = 2e-097
Identities = 238/257 (92%)
Strand = Plus / Plus
Query: 41 gcggcggcgatgacaacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccgcc 100
|||||||||||||| ||| || | ||||||||||| ||||||||||| |||||||| ||
Sbjct: 412 gcggcggcgatgacgacgagcctgaagaagaaccggaagaagcgcggtcacgtgtcggcg 471
Query: 101 gggcacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtggc 160
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||
Sbjct: 472 gggcacggccgcatcggcaagcaccggaagcaccctggaggtcgcggtaacgccggaggc 531
Query: 161 atgcaccaccaccgtatcctcttcgacaagtaccatccgggctacttcggcaaggttggc 220
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 532 atgcaccaccaccgcatcctcttcgacaagtaccacccgggctacttcggcaaggtcggc 591
Query: 221 atgcgttacttccataagctccgcaacaagttctactgccccgcggtcaacatcgagcgc 280
||||| |||||||| ||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 592 atgcgctacttccacaagctccgcaacaagttctactgcccctcggtcaacgtcgagcgg 651
Query: 281 ctctggtcgatggtgcc 297
|||||||||||||||||
Sbjct: 652 ctctggtcgatggtgcc 668
>gb|CL173358.1|CL173358 104_376_10890821_148_31794_341 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890821, DNA
sequence
Length = 549
Score = 246 bits (124), Expect = 2e-063
Identities = 133/136 (97%)
Strand = Plus / Plus
Query: 39 cggcggcggcgatgacaacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccg 98
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cggcggcggcgatgacgacgcgcttcaagaagaaccgcaagaagcgcggccacgtgtccg 473
Query: 99 ccgggcacggccgcatcggcaagcacaggaagcacccgggaggtcgcggtaacgccggtg 158
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 474 ccgggcacggccgtatcggcaagcaccggaagcacccgggaggtcgcggtaacgccggtg 533
Query: 159 gcatgcaccaccaccg 174
||||||||||||||||
Sbjct: 534 gcatgcaccaccaccg 549
>gb|AI724834.1|AI724834 RHIZ1_9_G08.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 363
Score = 167 bits (84), Expect = 2e-039
Identities = 108/116 (93%)
Strand = Plus / Minus
Query: 368 aaggtgctcgggaagggggtgctgccgccaaagcccattgtcgtcaaggccaagctcatc 427
||||||||||| |||||| |||||||||| |||||||| |||||||||||||||||||||
Sbjct: 354 aaggtgctcggcaaggggatgctgccgcccaagcccatcgtcgtcaaggccaagctcatc 295
Query: 428 tccaaggtcgccgagaagaagatcaaggcagcaggcggcgccgtcgtgctcaccgc 483
||||||||||||||||||||||||||||| || || ||||||||| ||||||||||
Sbjct: 294 tccaaggtcgccgagaagaagatcaaggctgctggaggcgccgtcctgctcaccgc 239
>gb|CW275295.1|CW275295 104_748_11404885_148_35384_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404885, DNA
sequence
Length = 301
Score = 95.6 bits (48), Expect = 5e-018
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 418 caagctcatctccaaggtcgccgagaagaagatcaaggcagcaggcggcgccgtcgtgct 477
|||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| ||||
Sbjct: 297 caagctcatctccaaggtcgccgagatgaagatcaagggtgcaggaggcgccgtcctgct 238
Query: 478 caccgcctaggt 489
|||||| |||||
Sbjct: 237 caccgcataggt 226
>gb|CW159605.1|CW159605 104_565_11149446_116_36406_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149446, DNA
sequence
Length = 686
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 626 ttttgatgccagttcatatcaaatatttcacatcaattaaatctatc 672
|||||||||||||||||||||||||| ||| || |||||| |||||
Sbjct: 681 ttttgatgccagttcatatcaaatatgtcagatatattaaagctatc 635
>gb|CL174912.1|CL174912 104_379_10892002_148_31768_370 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892002, DNA
sequence
Length = 594
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 307 ggcggcggaggccggcggcg 326
||||||||||||||||||||
Sbjct: 565 ggcggcggaggccggcggcg 584
>gb|CF489837.1|CF489837 POL1_59_H09.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_59_H09_A002 5', mRNA sequence
Length = 747
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 103 gcacggccgcatcggcaagc 122
||||||||||||||||||||
Sbjct: 243 gcacggccgcatcggcaagc 262
>gb|CN135018.1|CN135018 OX1_30_C01.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_30_C01_A002 3', mRNA sequence
Length = 583
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 421 gctcatctccaaggtcgccg 440
||||||||||||||||||||
Sbjct: 22 gctcatctccaaggtcgccg 41
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 319,946
Number of Sequences: 832831
Number of extensions: 319946
Number of successful extensions: 87738
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87689
Number of HSP's gapped (non-prelim): 39
length of query: 699
length of database: 491,359,669
effective HSP length: 20
effective length of query: 679
effective length of database: 474,703,049
effective search space: 322323370271
effective search space used: 322323370271
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)