BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448489.2.1
(677 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG103631.1|BG103631 RHIZ2_38_H11.g1_A003 Rhizome2 (RHIZ2... 626 e-178
gb|CD221643.1|CD221643 CCC1_70_E04.b1_A007 Callus culture/c... 468 e-130
gb|CW038350.1|CW038350 104_270_10504872_115_30386 Sorghum m... 206 2e-051
gb|CW038349.1|CW038349 104_270_10504872_114_30385 Sorghum m... 82 8e-014
gb|CD227098.1|CD227098 CCC1_4_E12.b1_A007 Callus culture/ce... 66 5e-009
gb|CW060796.1|CW060796 104_304_10520052_115_30144 Sorghum m... 50 3e-004
gb|CW261852.1|CW261852 104_729_11229737_116_35209_077 Sorgh... 50 3e-004
gb|CW295416.1|CW295416 104_776_11460918_116_35617_019 Sorgh... 50 3e-004
gb|CN130358.1|CN130358 RHOH1_41_A07.b1_A002 Acid- and alkal... 50 3e-004
gb|CW444261.1|CW444261 fsbb001f164m08k0 Sorghum methylation... 48 0.001
gb|CW485924.1|CW485924 fsbb001f248o11k0 Sorghum methylation... 46 0.004
gb|CW295417.1|CW295417 104_776_11460918_148_35613_019 Sorgh... 42 0.065
gb|CW069905.1|CW069905 104_320_10526223_1_30089 Sorghum met... 40 0.26
gb|CW216402.1|CW216402 104_649_11195097_148_37462_043 Sorgh... 40 0.26
gb|CW217099.1|CW217099 104_650_11195476_148_37131_012 Sorgh... 40 0.26
>gb|BG103631.1|BG103631 RHIZ2_38_H11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 609
Score = 626 bits (316), Expect = e-178
Identities = 394/423 (93%)
Strand = Plus / Minus
Query: 214 tctgaccttgttgatagccaaagcaagtatgcaattgccaaaccaccaactctcatctga 273
|||||||||||||||| | |||||||||| ||| ||||||||| |||||||||||||||
Sbjct: 609 tctgaccttgttgatatgccaagcaagtatccaactgccaaacccccaactctcatctga 550
Query: 274 actttcaggaaattgtagatattttggccttcatatctaagttctccacatcattaattg 333
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 549 actttcaggaaactgtggatattttggccttcatatctaagttctccacatcattaatcg 490
Query: 334 gtctagttgtctgatccctgaatctcttgatcttggggctttccagccccttgtgtgaga 393
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gtctggttgtctgatccctggttctcttgatcttggggctttccagccccttgtgtgaga 430
Query: 394 aaccatatagccgaagcacctggttgtcggcaaaattaaacgctcgctccatgctcctga 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aaccatatagccgaagcacctggttgtcggcaaaattaaacgctcgctccatgctcctga 370
Query: 454 ggcagcgctccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgag 513
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ggcagcgctccacggggtaatccccatagctcccacatggcttgcacccaacaaagtgag 310
Query: 514 tcacgaaaggccaccgctcgtcgccgaggcctnnntggtgattctccatcatctnntcat 573
|||| |||||||||||||| || || |||||| ||||||||||||||||||| ||||
Sbjct: 309 tcacaaaaggccaccgctcatcaccaaggcctgggtggtgattctccatcatctcctcat 250
Query: 574 acttatcnaccnacncagcccagaagccatgcnagtagtaggaattctcaatgaacacct 633
|||| || ||| | ||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 249 acttgtccaccagcccagcccagaagccatgcaagtagtaggaattctctatgaacacct 190
Query: 634 tgt 636
|||
Sbjct: 189 tgt 187
>gb|CD221643.1|CD221643 CCC1_70_E04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_70_E04_A007 3', mRNA sequence
Length = 553
Score = 468 bits (236), Expect = e-130
Identities = 266/276 (96%)
Strand = Plus / Minus
Query: 174 tggaaactagaacaaccatgtcccccatatcacaaaatgctctgaccttgttgatagcca 233
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 276 tggaaactagaacaaccatatcccccatatcacaaaatgctctgaccttgttgatagtca 217
Query: 234 aagcaagtatgcaattgccaaaccaccaactctcatctgaactttcaggaaattgtagat 293
|||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 216 aagcaagtatccaactgccaaaccaccaactctcatctgaactttcaggaaactgtggat 157
Query: 294 attttggccttcatatctaagttctccacatcattaattggtctagttgtctgatccctg 353
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 156 attttggccttcatatctaagttctccacatcattaatcggtctggttgtctgatccctg 97
Query: 354 aatctcttgatcttggggctttccagccccttgtgtgagaaaccatatagccgaagcacc 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ggtctcttgatcttggggctttccagccccttgtgtgagaaaccatatagccgaagcacc 37
Query: 414 tggttgtcggcaaaattaaacgctcgctccatgctc 449
||||||||||||||||||||||||||||||||||||
Sbjct: 36 tggttgtcggcaaaattaaacgctcgctccatgctc 1
Score = 147 bits (74), Expect = 2e-033
Identities = 102/110 (92%), Gaps = 1/110 (0%)
Strand = Plus / Minus
Query: 35 tacaaaagcgagactatttccatcagatttgagcttctatcatgttcaaccacgataata 94
|||||||||||||||||||||||| |||||||| | ||||| |||| ||| | ||||||
Sbjct: 410 tacaaaagcgagactatttccatctgatttgagatcctatcgtgtttaactcc-ataata 352
Query: 95 aacaaagcttgcaatctctagctgtcacataacaataaagattggtgaac 144
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aacaaagcttgcaatctctagctgtcacataacaataaagattggtgaac 302
>gb|CW038350.1|CW038350 104_270_10504872_115_30386 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10504872, DNA
sequence
Length = 625
Score = 206 bits (104), Expect = 2e-051
Identities = 158/182 (86%)
Strand = Plus / Plus
Query: 482 gctcccacatggcttgcacccaacaaagtgagtcacgaaaggccaccgctcgtcgccgag 541
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct: 1 gctcccacatggcttgcacccaacaaagtgagtcacaaaaggccaccgctcgtcaccaag 60
Query: 542 gcctnnntggtgattctccatcatctnntcatacttatcnaccnacncagcccagaagcc 601
|||| ||||||||||||||||||| |||||||| || ||| | |||||||||||||
Sbjct: 61 gcctgggtggtgattctccatcatctcctcatacttgtccaccagcccagcccagaagcc 120
Query: 602 atgcnagtagtaggaattctcaatgaacaccttgtnnatnnnnnngtcnttttgcgagag 661
|||| |||||||||||||||| ||||||||||||| || ||| |||||||||||
Sbjct: 121 atgcaagtagtaggaattctctatgaacaccttgtccatccacttgtccttttgcgagag 180
Query: 662 ca 663
||
Sbjct: 181 ca 182
>gb|CW038349.1|CW038349 104_270_10504872_114_30385 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10504872, DNA
sequence
Length = 796
Score = 81.8 bits (41), Expect = 8e-014
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 589 cagcccagaagccatgcnagtagtaggaattctcaatgaacaccttgtnnatnnnnnngt 648
||||||||||||||||| |||||||||||||||| ||||||||||||| || ||
Sbjct: 791 cagcccagaagccatgcaagtagtaggaattctctatgaacaccttgtccatccacttgt 732
Query: 649 cnttttgcgagagca 663
| |||||||||||||
Sbjct: 731 ccttttgcgagagca 717
>gb|CD227098.1|CD227098 CCC1_4_E12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_4_E12_A007 3', mRNA sequence
Length = 658
Score = 65.9 bits (33), Expect = 5e-009
Identities = 132/166 (79%)
Strand = Plus / Minus
Query: 402 agccgaagcacctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgc 461
||||| ||||||||||||||||| || || || || |||||||||| ||||| ||| ||
Sbjct: 416 agccggagcacctggttgtcggcgaagttgaaggcgcgctccatgcccctgacgcaccgg 357
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
|||| ||||||||| | || || || || | |||||| || || ||||| || | |||
Sbjct: 356 tccagcgggtaatcctcgtacctgccgcaggtcttgcagccgacgaagtgggtgatgaat 297
Query: 522 ggccaccgctcgtcgccgaggcctnnntggtgattctccatcatct 567
|||||||| ||||||||||| || ||||| | |||||||||||
Sbjct: 296 ggccaccggtcgtcgccgagccccgggtggtgctcctccatcatct 251
>gb|CW060796.1|CW060796 104_304_10520052_115_30144 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10520052, DNA
sequence
Length = 554
Score = 50.1 bits (25), Expect = 3e-004
Identities = 130/166 (78%)
Strand = Plus / Plus
Query: 402 agccgaagcacctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgc 461
||||| ||||||||||||||||| || || || || |||||||||| | || ||| ||
Sbjct: 260 agccggagcacctggttgtcggcgaagttgaaggcgcgctccatgccgccgacgcaccgg 319
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
|||| ||||||||| | || || || || | |||||| || || ||||| || | |||
Sbjct: 320 tccagcgggtaatcctcgtacctgccgcaggtcttgcagccgacgaagtgcgtgatgaat 379
Query: 522 ggccaccgctcgtcgccgaggcctnnntggtgattctccatcatct 567
|||||||| ||||||||||| || ||||| | |||||||||||
Sbjct: 380 ggccaccggtcgtcgccgagccccgggtggtgctcctccatcatct 425
>gb|CW261852.1|CW261852 104_729_11229737_116_35209_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229737, DNA
sequence
Length = 641
Score = 50.1 bits (25), Expect = 3e-004
Identities = 130/166 (78%)
Strand = Plus / Plus
Query: 402 agccgaagcacctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgc 461
||||| ||||||||||||||||| || || || || |||||||||| | || ||| ||
Sbjct: 137 agccggagcacctggttgtcggcgaagttgaaggcgcgctccatgccgccgacgcaccgg 196
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
|||| ||||||||| | || || || || | |||||| || || ||||| || | |||
Sbjct: 197 tccagcgggtaatcctcgtacctgccgcaggtcttgcagccgacgaagtgcgtgatgaat 256
Query: 522 ggccaccgctcgtcgccgaggcctnnntggtgattctccatcatct 567
|||||||| ||||||||||| || ||||| | |||||||||||
Sbjct: 257 ggccaccggtcgtcgccgagccccgggtggtgctcctccatcatct 302
>gb|CW295416.1|CW295416 104_776_11460918_116_35617_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11460918, DNA
sequence
Length = 713
Score = 50.1 bits (25), Expect = 3e-004
Identities = 130/166 (78%)
Strand = Plus / Plus
Query: 402 agccgaagcacctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgc 461
||||| ||||||||||||||||| || || || || |||||||||| | || ||| ||
Sbjct: 243 agccggagcacctggttgtcggcgaagttgaaggcgcgctccatgccgccgacgcaccgg 302
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
|||| ||||||||| | || || || || | |||||| || || ||||| || | |||
Sbjct: 303 tccagcgggtaatcctcgtacctgccgcaggtcttgcagccgacgaagtgcgtgatgaat 362
Query: 522 ggccaccgctcgtcgccgaggcctnnntggtgattctccatcatct 567
|||||||| ||||||||||| || ||||| | |||||||||||
Sbjct: 363 ggccaccggtcgtcgccgagccccgggtggtgctcctccatcatct 408
>gb|CN130358.1|CN130358 RHOH1_41_A07.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_41_A07_A002 3', mRNA sequence
Length = 729
Score = 50.1 bits (25), Expect = 3e-004
Identities = 130/166 (78%)
Strand = Plus / Minus
Query: 402 agccgaagcacctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgc 461
||||| ||||||||||||||||| || || || || |||||||||| | || ||| ||
Sbjct: 414 agccggagcacctggttgtcggcgaagttgaaggcgcgctccatgccgccgacgcaccgg 355
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
|||| ||||||||| | || || || || | |||||| || || ||||| || | |||
Sbjct: 354 tccagcgggtaatcctcgtacctgccgcaggtcttgcagccgacgaagtgcgtgatgaat 295
Query: 522 ggccaccgctcgtcgccgaggcctnnntggtgattctccatcatct 567
|||||||| ||||||||||| || ||||| | |||||||||||
Sbjct: 294 ggccaccggtcgtcgccgagccccgggtggtgctcctccatcatct 249
>gb|CW444261.1|CW444261 fsbb001f164m08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f164m08, DNA
sequence
Length = 642
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 486 ccacatggcttgcacccaacaaagtgagtcacgaaaggccaccg 529
||||||||||||||||| |||||||| || |||| ||||||||
Sbjct: 37 ccacatggcttgcacccgacaaagtgtgtgacgagcggccaccg 80
>gb|CW485924.1|CW485924 fsbb001f248o11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f248o11, DNA
sequence
Length = 551
Score = 46.1 bits (23), Expect = 0.004
Identities = 125/160 (78%)
Strand = Plus / Plus
Query: 408 agcacctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgctccact 467
||||||||||||||||| || || || || |||||||||| | || ||| || ||||
Sbjct: 8 agcacctggttgtcggcgaagttgaaggcgcgctccatgccgccgacgcaccggtccagc 67
Query: 468 gggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaaggccac 527
||||||||| | || || || || | |||||| || || ||||| || | ||| ||||||
Sbjct: 68 gggtaatcctcgtacctgccgcaggtcttgcagccgacgaagtgcgtgatgaatggccac 127
Query: 528 cgctcgtcgccgaggcctnnntggtgattctccatcatct 567
|| ||||||||||| || ||||| | |||||||||||
Sbjct: 128 cggtcgtcgccgagccccgggtggtgctcctccatcatct 167
>gb|CW295417.1|CW295417 104_776_11460918_148_35613_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11460918, DNA
sequence
Length = 621
Score = 42.1 bits (21), Expect = 0.065
Identities = 129/166 (77%)
Strand = Plus / Minus
Query: 402 agccgaagcacctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgc 461
||||| ||||||||||||||||| || || || || |||| ||||| | || ||| ||
Sbjct: 618 agccggagcacctggttgtcggcgaagttgaaggcgcgctacatgccgccgacgcaccgg 559
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
|||| ||||||||| | || || || || | |||||| || || ||||| || | |||
Sbjct: 558 tccagcgggtaatcctcgtacctgccgcaggtcttgcagccgacgaagtgcgtgatgaat 499
Query: 522 ggccaccgctcgtcgccgaggcctnnntggtgattctccatcatct 567
|||||||| ||||||||||| || ||||| | |||||||||||
Sbjct: 498 ggccaccggtcgtcgccgagccccgggtggtgctcctccatcatct 453
>gb|CW069905.1|CW069905 104_320_10526223_1_30089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10526223, DNA
sequence
Length = 550
Score = 40.1 bits (20), Expect = 0.26
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 408 agcacctggttgtcggcaaaattaaacgctcgctccatgc 447
||||||||||||||||| || || || || ||||||||||
Sbjct: 231 agcacctggttgtcggcgaagttgaaggcgcgctccatgc 270
>gb|CW216402.1|CW216402 104_649_11195097_148_37462_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195097, DNA
sequence
Length = 552
Score = 40.1 bits (20), Expect = 0.26
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 408 agcacctggttgtcggcaaaattaaacgctcgctccatgc 447
||||||||||||||||| || || || || ||||||||||
Sbjct: 129 agcacctggttgtcggcgaagttgaaggcgcgctccatgc 168
>gb|CW217099.1|CW217099 104_650_11195476_148_37131_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195476, DNA
sequence
Length = 586
Score = 40.1 bits (20), Expect = 0.26
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 408 agcacctggttgtcggcaaaattaaacgctcgctccatgc 447
||||||||||||||||| || || || || ||||||||||
Sbjct: 176 agcacctggttgtcggcgaagttgaaggcgcgctccatgc 215
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 131,905
Number of Sequences: 832831
Number of extensions: 131905
Number of successful extensions: 35018
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 34994
Number of HSP's gapped (non-prelim): 18
length of query: 677
length of database: 491,359,669
effective HSP length: 19
effective length of query: 658
effective length of database: 475,535,880
effective search space: 312902609040
effective search space used: 312902609040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)