BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448387.2.1
(919 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI211898.1|BI211898 IP1_62_G05.g1_A002 Immature pannicle... 773 0.0
gb|BZ629316.1|BZ629316 ih65e07.b1 WGS-SbicolorF (DH5a methy... 494 e-138
gb|CW078695.1|CW078695 104_396_10898313_114_31923_153 Sorgh... 494 e-138
gb|CW362994.1|CW362994 fsbb001f034f02k0 Sorghum methylation... 392 e-107
gb|CL192003.1|CL192003 104_414_10939937_114_32245_071 Sorgh... 369 e-100
gb|CW208270.1|CW208270 104_637_11188585_116_37043_003 Sorgh... 369 e-100
gb|CW302340.1|CW302340 104_786_11464668_148_35667_040 Sorgh... 289 2e-076
gb|CL183652.1|CL183652 104_396_10898313_116_31924_153 Sorgh... 285 4e-075
gb|CW302339.1|CW302339 104_786_11464668_116_35663_040 Sorgh... 276 3e-072
gb|BZ629317.1|BZ629317 ih65e07.g1 WGS-SbicolorF (DH5a methy... 202 4e-050
gb|CW229174.1|CW229174 104_670_11207164_116_37262_010 Sorgh... 202 4e-050
gb|BE597253.1|BE597253 PI1_70_A05.g1_A002 Pathogen induced ... 202 4e-050
gb|CD207861.1|CD207861 HS1_35_C09.g1_A012 Heat-shocked seed... 202 4e-050
gb|CF429302.1|CF429302 PH1_21_H12.b1_A002 Phosphorous-defic... 202 4e-050
gb|CN149290.1|CN149290 WOUND1_61_G12.g1_A002 Wounded leaves... 202 4e-050
gb|CX617970.1|CX617970 GABR1_37_A07.b1_A002 GA- or brassino... 202 4e-050
gb|CX618053.1|CX618053 GABR1_37_A07.g1_A002 GA- or brassino... 202 4e-050
gb|CX622317.1|CX622317 GABR1_63_F05.b2_A002 GA- or brassino... 202 4e-050
gb|CX622403.1|CX622403 GABR1_63_F05.g2_A002 GA- or brassino... 202 4e-050
gb|CW122347.1|CW122347 104_501_11110608_148_34676_094 Sorgh... 194 1e-047
gb|CN149206.1|CN149206 WOUND1_61_G12.b1_A002 Wounded leaves... 194 1e-047
gb|CW225654.1|CW225654 104_663_11204471_116_37207_090 Sorgh... 186 2e-045
gb|BI211968.1|BI211968 IP1_62_G05.b1_A002 Immature pannicle... 137 2e-030
gb|CW380206.1|CW380206 fsbb001f059o07f0 Sorghum methylation... 115 7e-024
gb|CD227544.1|CD227544 CCC1_52_E04.b1_A007 Callus culture/c... 115 7e-024
gb|CW071495.1|CW071495 104_323_10591543_114_30471 Sorghum m... 90 4e-016
gb|CW077966.1|CW077966 104_386_10894698_116_31912_378 Sorgh... 90 4e-016
gb|CW077967.1|CW077967 104_386_10894698_148_31911_378 Sorgh... 90 4e-016
gb|CW128046.1|CW128046 104_509_11113781_116_34744_023 Sorgh... 90 4e-016
gb|CN129079.1|CN129079 RHOH1_33_H09.b3_A002 Acid- and alkal... 82 1e-013
gb|CX606247.1|CX606247 ANR1_2_A04.b1_A002 Anaerobic roots S... 72 1e-010
gb|CW134050.1|CW134050 104_518_11117099_148_34816_046 Sorgh... 70 4e-010
gb|CW194292.1|CW194292 104_617_11180020_148_36790_008 Sorgh... 70 4e-010
gb|CX613435.1|CX613435 GABR1_8_D10.b1_A002 GA- or brassinol... 70 4e-010
gb|CW034153.1|CW034153 104_264_10502381_115_30380 Sorghum m... 62 1e-007
gb|CD235658.1|CD235658 SS1_37_F06.b1_A012 Salt-stressed see... 62 1e-007
gb|BE359084.1|BE359084 DG1_38_H02.g1_A002 Dark Grown 1 (DG1... 60 4e-007
gb|CW471409.1|CW471409 fsbb001f225e14f0 Sorghum methylation... 56 6e-006
gb|BE597474.1|BE597474 PI1_70_A05.b1_A002 Pathogen induced ... 54 2e-005
gb|CD232716.1|CD232716 SS1_1_H12.b1_A012 Salt-stressed seed... 54 2e-005
gb|CF429879.1|CF429879 PH1_25_E11.b1_A002 Phosphorous-defic... 54 2e-005
gb|AI724956.1|AI724956 RHIZ1_31_H10.y3_A001 Rhizome1 (RHIZ1... 50 4e-004
gb|CW073480.1|CW073480 104_335_10779929_114_31363_329 Sorgh... 48 0.001
gb|CW345534.1|CW345534 104_848_11488543_148_36210_022 Sorgh... 48 0.001
gb|BE597274.1|BE597274 PI1_70_C05.g1_A002 Pathogen induced ... 48 0.001
gb|CD229384.1|CD229384 CCC1_15_E01.b1_A007 Callus culture/c... 48 0.001
gb|CD429206.1|CD429206 ETH1_3_C09.b1_A002 Ethylene-treated ... 48 0.001
gb|CN129749.1|CN129749 RHOH1_37_E03.b1_A002 Acid- and alkal... 48 0.001
gb|CW122346.1|CW122346 104_501_11110608_116_34680_094 Sorgh... 44 0.023
gb|CW146571.1|CW146571 104_539_11139064_116_34991_056 Sorgh... 44 0.023
gb|CW156668.1|CW156668 104_559_11146810_116_36374_035 Sorgh... 44 0.023
gb|CW156669.1|CW156669 104_559_11146810_148_36373_035 Sorgh... 44 0.023
gb|CW208271.1|CW208271 104_637_11188585_148_37046_003 Sorgh... 44 0.023
gb|CW225655.1|CW225655 104_663_11204471_148_37208_090 Sorgh... 44 0.023
gb|CW229175.1|CW229175 104_670_11207164_148_37261_010 Sorgh... 44 0.023
gb|CW426309.1|CW426309 fsbb001f137k03k0 Sorghum methylation... 44 0.023
gb|CD207843.1|CD207843 HS1_35_C09.b1_A012 Heat-shocked seed... 44 0.023
gb|CW298845.1|CW298845 104_781_11462791_148_35654_022 Sorgh... 40 0.35
gb|BE356055.1|BE356055 DG1_121_E01.g1_A002 Dark Grown 1 (DG... 40 0.35
gb|BF176804.1|BF176804 EM1_4_G08.g1_A002 Embryo 1 (EM1) Sor... 40 0.35
gb|BG411423.1|BG411423 EM1_58_B11.g1_A002 Embryo 1 (EM1) So... 40 0.35
gb|BG947828.1|BG947828 IP1_5_F10.b1_A002 Immature pannicle ... 40 0.35
gb|CD227427.1|CD227427 CCC1_51_G08.b1_A007 Callus culture/c... 40 0.35
gb|CF756674.1|CF756674 DSAF1_7_C07.g1_A011 Drought-stressed... 40 0.35
gb|CF761267.1|CF761267 DSAF1_73_B04.b1_A011 Drought-stresse... 40 0.35
gb|CF770848.1|CF770848 DSBF1_10_E01.g1_A010 Drought-stresse... 40 0.35
gb|CF770850.1|CF770850 DSBF1_10_E04.g1_A010 Drought-stresse... 40 0.35
gb|CN138360.1|CN138360 OX1_63_G05.b1_A002 Oxidatively-stres... 40 0.35
>gb|BI211898.1|BI211898 IP1_62_G05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 679
Score = 773 bits (390), Expect = 0.0
Identities = 429/442 (97%)
Strand = Plus / Minus
Query: 426 tcttgacgaactcgtccctgagctgcctccgcaggatcttgccggacaccgacttgggga 485
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tcttgatgaagtcgtccctgagctgcctccgcaggatcttgccggacaccgacttgggga 383
Query: 486 tggcgtccacgaagcgcagcagccggagcttcttgtacgacgcaacgcgccccgccacgt 545
||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 382 tggcgtccacgaaccgcagcagccggagcttcttgtacgacgccacgcgctccgccacgt 323
Query: 546 acgccatcatgtccgcctcgctctccggcgcgccacgtcgccgcaccacgcacgacgccg 605
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 322 acgccatcatgtccgcctcgctctccggcgcgccacgacgccgcaccacgcacgacgccg 263
Query: 606 ggacctcgccggcctcctcgtccggcagcccgaagacggcggcgtcctcgacggacgggt 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggacctcgccggcctcctcgtccggcagcccgaagacggcggcgtcctcgacggacgggt 203
Query: 666 gagacagcaggatggcctccagctcggcaggggcgacctggaagcccttgtacttgatga 725
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 202 gagacaggaggatggcctccagctcggcaggggccacctggaagcccttgtacttgatga 143
Query: 726 gctccttgatgcggtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgc 785
|||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 142 gctccttgatccggtcgacgatgaagacgtcgccgtcgtcgtcgatgtacccgacgtcgc 83
Query: 786 ccgtgtggagccaccccgcggcgtcgatggtgcgctccgtctcctccttcctcctgtagt 845
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 82 cggtgtggagccaccccgcggcgtcgatggtgctctccgtctcctccttcctcctgtagt 23
Query: 846 agccctgcatcacggcctggct 867
||||||||||||||||||||||
Sbjct: 22 agccctgcatcacggcctggct 1
>gb|BZ629316.1|BZ629316 ih65e07.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih65e07 5', DNA sequence
Length = 668
Score = 494 bits (249), Expect = e-138
Identities = 276/285 (96%)
Strand = Plus / Minus
Query: 634 cccgaagacggcggcgtcctcgacggacgggtgagacagcaggatggcctccagctcggc 693
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 307 cccgaagacggcggcgtcctcgacggacgggtgagacaggaggatggcctccagctcggc 248
Query: 694 aggggcgacctggaagcccttgtacttgatgagctccttgatgcggtccacgatgaacac 753
|||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct: 247 aggggccacctggaagcccttgtacttgatgagctccttgatccggtcgacgatgaagac 188
Query: 754 gtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagccaccccgcggcgtcgat 813
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 187 gtcgccgtcgtcgtcgatgtacccgacgtcgccggtgtggagccaccccgcggcgtcgat 128
Query: 814 ggtgcgctccgtctcctccttcctcctgtagtagccctgcatcacggcctggctccgcac 873
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 ggtgctctccgtctcctccttcctcctgtagtagccctgcatcacggcctggctccgcac 68
Query: 874 gcagatctcccccggcgggttcttgggcagcgaccgccccgtgtc 918
|||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 67 gcagatctccccgggcgtgttcttgggcagcgaccgccccgtgtc 23
Score = 369 bits (186), Expect = e-100
Identities = 204/210 (97%)
Strand = Plus / Minus
Query: 426 tcttgacgaactcgtccctgagctgcctccgcaggatcttgccggacaccgacttgggga 485
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tcttgatgaagtcgtccctgagctgcctccgcaggatcttgccggacaccgacttgggga 533
Query: 486 tggcgtccacgaagcgcagcagccggagcttcttgtacgacgcaacgcgccccgccacgt 545
||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 532 tggcgtccacgaaccgcagcagccggagcttcttgtacgacgccacgcgctccgccacgt 473
Query: 546 acgccatcatgtccgcctcgctctccggcgcgccacgtcgccgcaccacgcacgacgccg 605
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 472 acgccatcatgtccgcctcgctctccggcgcgccacgacgccgcaccacgcacgacgccg 413
Query: 606 ggacctcgccggcctcctcgtccggcagcc 635
||||||||||||||||||||||||||||||
Sbjct: 412 ggacctcgccggcctcctcgtccggcagcc 383
>gb|CW078695.1|CW078695 104_396_10898313_114_31923_153 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898313, DNA
sequence
Length = 767
Score = 494 bits (249), Expect = e-138
Identities = 276/285 (96%)
Strand = Plus / Minus
Query: 634 cccgaagacggcggcgtcctcgacggacgggtgagacagcaggatggcctccagctcggc 693
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 464 cccgaagacggcggcgtcctcgacggacgggtgagacaggaggatggcctccagctcggc 405
Query: 694 aggggcgacctggaagcccttgtacttgatgagctccttgatgcggtccacgatgaacac 753
|||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct: 404 aggggccacctggaagcccttgtacttgatgagctccttgatccggtcgacgatgaagac 345
Query: 754 gtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagccaccccgcggcgtcgat 813
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 344 gtcgccgtcgtcgtcgatgtacccgacgtcgccggtgtggagccaccccgcggcgtcgat 285
Query: 814 ggtgcgctccgtctcctccttcctcctgtagtagccctgcatcacggcctggctccgcac 873
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ggtgctctccgtctcctccttcctcctgtagtagccctgcatcacggcctggctccgcac 225
Query: 874 gcagatctcccccggcgggttcttgggcagcgaccgccccgtgtc 918
|||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 224 gcagatctccccgggcgtgttcttgggcagcgaccgccccgtgtc 180
Score = 369 bits (186), Expect = e-100
Identities = 204/210 (97%)
Strand = Plus / Minus
Query: 426 tcttgacgaactcgtccctgagctgcctccgcaggatcttgccggacaccgacttgggga 485
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tcttgatgaagtcgtccctgagctgcctccgcaggatcttgccggacaccgacttgggga 690
Query: 486 tggcgtccacgaagcgcagcagccggagcttcttgtacgacgcaacgcgccccgccacgt 545
||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 689 tggcgtccacgaaccgcagcagccggagcttcttgtacgacgccacgcgctccgccacgt 630
Query: 546 acgccatcatgtccgcctcgctctccggcgcgccacgtcgccgcaccacgcacgacgccg 605
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 629 acgccatcatgtccgcctcgctctccggcgcgccacgacgccgcaccacgcacgacgccg 570
Query: 606 ggacctcgccggcctcctcgtccggcagcc 635
||||||||||||||||||||||||||||||
Sbjct: 569 ggacctcgccggcctcctcgtccggcagcc 540
>gb|CW362994.1|CW362994 fsbb001f034f02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f034f02, DNA
sequence
Length = 687
Score = 392 bits (198), Expect = e-107
Identities = 264/286 (92%)
Strand = Plus / Plus
Query: 634 cccgaagacggcggcgtcctcgacggacgggtgagacagcaggatggcctccagctcggc 693
|||||||||||| ||||| ||||| |||||||| ||||| || |||||||||||||||||
Sbjct: 118 cccgaagacggccgcgtcttcgaccgacgggtgggacaggagaatggcctccagctcggc 177
Query: 694 aggggcgacctggaagcccttgtacttgatgagctccttgatgcggtccacgatgaacac 753
||| || ||||||||||||||||||||||||||||||||||| ||||| |||| ||||||
Sbjct: 178 aggagcaacctggaagcccttgtacttgatgagctccttgatccggtcgacgacgaacac 237
Query: 754 gtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagccaccccgcggcgtcgat 813
||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||||||||
Sbjct: 238 gtcgccgtcgtcgtcgatgtagccgacgtcgccggtgtggagccagcccttggcgtcgat 297
Query: 814 ggtgcgctccgtctcctccttcctcctgtagtagccctgcatcacggcctggctccgcac 873
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 298 ggtgcgctccgtctcctccttcttcctgtagtagccctgcatcacggcctggctccggac 357
Query: 874 gcagatctcccccggcgggttcttgggcagcgaccgccccgtgtcg 919
|||||||||||| | || |||||||||||||||||| |||||||||
Sbjct: 358 gcagatctccccggccgtgttcttgggcagcgaccggcccgtgtcg 403
>gb|CL192003.1|CL192003 104_414_10939937_114_32245_071 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10939937, DNA
sequence
Length = 669
Score = 369 bits (186), Expect = e-100
Identities = 204/210 (97%)
Strand = Plus / Plus
Query: 426 tcttgacgaactcgtccctgagctgcctccgcaggatcttgccggacaccgacttgggga 485
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tcttgatgaagtcgtccctgagctgcctccgcaggatcttgccggacaccgacttgggga 438
Query: 486 tggcgtccacgaagcgcagcagccggagcttcttgtacgacgcaacgcgccccgccacgt 545
||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 439 tggcgtccacgaaccgcagcagccggagcttcttgtacgacgccacgcgctccgccacgt 498
Query: 546 acgccatcatgtccgcctcgctctccggcgcgccacgtcgccgcaccacgcacgacgccg 605
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 499 acgccatcatgtccgcctcgctctccggcgcgccacgacgccgcaccacgcacgacgccg 558
Query: 606 ggacctcgccggcctcctcgtccggcagcc 635
||||||||||||||||||||||||||||||
Sbjct: 559 ggacctcgccggcctcctcgtccggcagcc 588
>gb|CW208270.1|CW208270 104_637_11188585_116_37043_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11188585, DNA
sequence
Length = 625
Score = 369 bits (186), Expect = e-100
Identities = 204/210 (97%)
Strand = Plus / Minus
Query: 426 tcttgacgaactcgtccctgagctgcctccgcaggatcttgccggacaccgacttgggga 485
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tcttgatgaagtcgtccctgagctgcctccgcaggatcttgccggacaccgacttgggga 328
Query: 486 tggcgtccacgaagcgcagcagccggagcttcttgtacgacgcaacgcgccccgccacgt 545
||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 327 tggcgtccacgaaccgcagcagccggagcttcttgtacgacgccacgcgctccgccacgt 268
Query: 546 acgccatcatgtccgcctcgctctccggcgcgccacgtcgccgcaccacgcacgacgccg 605
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 267 acgccatcatgtccgcctcgctctccggcgcgccacgacgccgcaccacgcacgacgccg 208
Query: 606 ggacctcgccggcctcctcgtccggcagcc 635
||||||||||||||||||||||||||||||
Sbjct: 207 ggacctcgccggcctcctcgtccggcagcc 178
Score = 186 bits (94), Expect = 2e-045
Identities = 100/102 (98%)
Strand = Plus / Minus
Query: 634 cccgaagacggcggcgtcctcgacggacgggtgagacagcaggatggcctccagctcggc 693
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 102 cccgaagacggcggcgtcctcgacggacgggtgagacaggaggatggcctccagctcggc 43
Query: 694 aggggcgacctggaagcccttgtacttgatgagctccttgat 735
|||||| |||||||||||||||||||||||||||||||||||
Sbjct: 42 aggggccacctggaagcccttgtacttgatgagctccttgat 1
>gb|CW302340.1|CW302340 104_786_11464668_148_35667_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464668, DNA
sequence
Length = 595
Score = 289 bits (146), Expect = 2e-076
Identities = 191/206 (92%)
Strand = Plus / Plus
Query: 428 ttgacgaactcgtccctgagctgcctccgcaggatcttgccggacaccgacttggggatg 487
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 273 ttgacgaactcgtccctaagctgccgccgcaggatcttgccggacaccgacttggggatg 332
Query: 488 gcgtccacgaagcgcagcagccggagcttcttgtacgacgcaacgcgccccgccacgtac 547
|||||||||| ||||| |||||||||||||||||||||| ||||| || |||||||||
Sbjct: 333 acgtccacgaactgcagctgccggagcttcttgtacgacgccacgcgaccggccacgtac 392
Query: 548 gccatcatgtccgcctcgctctccggcgcgccacgtcgccgcaccacgcacgacgccggg 607
||||| ||||| ||||||||||||| || |||||| |||||||||||||||||| |||||
Sbjct: 393 gccatgatgtctgcctcgctctccgacgagccacgccgccgcaccacgcacgacaccggg 452
Query: 608 acctcgccggcctcctcgtccggcag 633
||||||||||||||||||||||||||
Sbjct: 453 acctcgccggcctcctcgtccggcag 478
>gb|CL183652.1|CL183652 104_396_10898313_116_31924_153 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898313, DNA
sequence
Length = 694
Score = 285 bits (144), Expect = 4e-075
Identities = 164/171 (95%)
Strand = Plus / Plus
Query: 426 tcttgacgaactcgtccctgagctgcctccgcaggatcttgccggacaccgacttgggga 485
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 524 tcttgatgaagtcgtccctgagctgcctccgcaggatcttgccggacaccgacttgngga 583
Query: 486 tggcgtccacgaagcgcagcagccggagcttcttgtacgacgcaacgcgccccgccacgt 545
||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 584 tggcgtccacgaaccgcagcagccggagcttcttgtacgacgccacgcgctccgccacgt 643
Query: 546 acgccatcatgtccgcctcgctctccggcgcgccacgtcgccgcaccacgc 596
||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 644 acgccatcatgtccgcctcgctctccggcgcgccacgacgccgcaccacgc 694
Score = 44.1 bits (22), Expect = 0.023
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 295 agtagcttggaacatctgactg 316
||||||||||||||||||||||
Sbjct: 17 agtagcttggaacatctgactg 38
>gb|CW302339.1|CW302339 104_786_11464668_116_35663_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464668, DNA
sequence
Length = 703
Score = 276 bits (139), Expect = 3e-072
Identities = 183/198 (92%)
Strand = Plus / Minus
Query: 722 atgagctccttgatgcggtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacg 781
|||||||||||||| ||||| |||| ||||||||||||||||||||||||||| ||||||
Sbjct: 703 atgagctccttgatccggtcgacgacgaacacgtcgccgtcgtcgtcgatgtagccgacg 644
Query: 782 tcgcccgtgtggagccaccccgcggcgtcgatggtgcgctccgtctcctccttcctcctg 841
||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 643 tcgccggtgtggagccagcccttggcgtcgatggtgcgctccgtctcctccttcttcctg 584
Query: 842 tagtagccctgcatcacggcctggctccgcacgcagatctcccccggcgggttcttgggc 901
|||||||| |||||||||||||||||||| |||||||||||||| | || ||||||||||
Sbjct: 583 tagtagccntgcatcacggcctggctccggacgcagatctccccggccgtgttcttgggc 524
Query: 902 agcgaccgccccgtgtcg 919
|||||||| |||||||||
Sbjct: 523 agcgaccggcccgtgtcg 506
>gb|BZ629317.1|BZ629317 ih65e07.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih65e07 5', DNA sequence
Length = 680
Score = 202 bits (102), Expect = 4e-050
Identities = 114/118 (96%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 159 aggcgtaccggccgtgccctggcttcgtcgcgtccggcggccgctatcggcgccagggcc 218
Query: 61 aaagcatggacgacgttgcatccggcagggggaaaaagaaaccctctcccgccaaaaa 118
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 219 aaagcatggacgacgttgcatccggcaggggaaagaagaaaccctctcccgccaaaaa 276
>gb|CW229174.1|CW229174 104_670_11207164_116_37262_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207164, DNA
sequence
Length = 608
Score = 202 bits (102), Expect = 4e-050
Identities = 114/118 (96%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 377 aggcgtaccggccgtgccctggcttcgtcgcgtccggcggccgctatcggcgccagggcc 436
Query: 61 aaagcatggacgacgttgcatccggcagggggaaaaagaaaccctctcccgccaaaaa 118
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 437 aaagcatggacgacgttgcatccggcaggggaaagaagaaaccctctcccgccaaaaa 494
>gb|BE597253.1|BE597253 PI1_70_A05.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 563
Score = 202 bits (102), Expect = 4e-050
Identities = 114/118 (96%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 134 aggcgtaccggccgtgccctggcttcgtcgcgtccggcggccgctatcggcgccagggcc 193
Query: 61 aaagcatggacgacgttgcatccggcagggggaaaaagaaaccctctcccgccaaaaa 118
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 194 aaagcatggacgacgttgcatccggcaggggaaagaagaaaccctctcccgccaaaaa 251
Score = 44.1 bits (22), Expect = 0.023
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 192 ggggaagctcaagttattcaggaaca 217
||||||||||||||||||||| ||||
Sbjct: 453 ggggaagctcaagttattcagaaaca 478
>gb|CD207861.1|CD207861 HS1_35_C09.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_35_C09_A012 5', mRNA sequence
Length = 614
Score = 202 bits (102), Expect = 4e-050
Identities = 114/118 (96%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 445 aggcgtaccggccgtgccctggcttcgtcgcgtccggcggccgctatcggcgccagggcc 504
Query: 61 aaagcatggacgacgttgcatccggcagggggaaaaagaaaccctctcccgccaaaaa 118
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 505 aaagcatggacgacgttgcatccggcaggggaaagaagaaaccctctcccgccaaaaa 562
>gb|CF429302.1|CF429302 PH1_21_H12.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_21_H12_A002 3', mRNA sequence
Length = 704
Score = 202 bits (102), Expect = 4e-050
Identities = 114/118 (96%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 101 aggcgtaccggccgtgccctggcttcgtcgcgtccggcggccgctatcggcgccagggcc 160
Query: 61 aaagcatggacgacgttgcatccggcagggggaaaaagaaaccctctcccgccaaaaa 118
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 161 aaagcatggacgacgttgcatccggcaggggaaagaagaaaccctctcccgccaaaaa 218
Score = 44.1 bits (22), Expect = 0.023
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 295 agtagcttggaacatctgactg 316
||||||||||||||||||||||
Sbjct: 572 agtagcttggaacatctgactg 593
Score = 44.1 bits (22), Expect = 0.023
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 192 ggggaagctcaagttattcaggaaca 217
||||||||||||||||||||| ||||
Sbjct: 420 ggggaagctcaagttattcagaaaca 445
>gb|CN149290.1|CN149290 WOUND1_61_G12.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_61_G12_A002 5', mRNA sequence
Length = 764
Score = 202 bits (102), Expect = 4e-050
Identities = 114/118 (96%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 430 aggcgtaccggccgtgccctggcttcgtcgcgtccggcggccgctatcggcgccagggcc 489
Query: 61 aaagcatggacgacgttgcatccggcagggggaaaaagaaaccctctcccgccaaaaa 118
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 490 aaagcatggacgacgttgcatccggcaggggaaagaagaaaccctctcccgccaaaaa 547
>gb|CX617970.1|CX617970 GABR1_37_A07.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_37_A07_A002 3', mRNA sequence
Length = 742
Score = 202 bits (102), Expect = 4e-050
Identities = 114/118 (96%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 138 aggcgtaccggccgtgccctggcttcgtcgcgtccggcggccgctatcggcgccagggcc 197
Query: 61 aaagcatggacgacgttgcatccggcagggggaaaaagaaaccctctcccgccaaaaa 118
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 198 aaagcatggacgacgttgcatccggcaggggaaagaagaaaccctctcccgccaaaaa 255
Score = 44.1 bits (22), Expect = 0.023
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 295 agtagcttggaacatctgactg 316
||||||||||||||||||||||
Sbjct: 609 agtagcttggaacatctgactg 630
Score = 44.1 bits (22), Expect = 0.023
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 192 ggggaagctcaagttattcaggaaca 217
||||||||||||||||||||| ||||
Sbjct: 457 ggggaagctcaagttattcagaaaca 482
>gb|CX618053.1|CX618053 GABR1_37_A07.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_37_A07_A002 5', mRNA sequence
Length = 651
Score = 202 bits (102), Expect = 4e-050
Identities = 114/118 (96%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 417 aggcgtaccggccgtgccctggcttcgtcgcgtccggcggccgctatcggcgccagggcc 476
Query: 61 aaagcatggacgacgttgcatccggcagggggaaaaagaaaccctctcccgccaaaaa 118
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 477 aaagcatggacgacgttgcatccggcaggggaaagaagaaaccctctcccgccaaaaa 534
>gb|CX622317.1|CX622317 GABR1_63_F05.b2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_63_F05_A002 3', mRNA sequence
Length = 645
Score = 202 bits (102), Expect = 4e-050
Identities = 114/118 (96%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 166 aggcgtaccggccgtgccctggcttcgtcgcgtccggcggccgctatcggcgccagggcc 225
Query: 61 aaagcatggacgacgttgcatccggcagggggaaaaagaaaccctctcccgccaaaaa 118
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 226 aaagcatggacgacgttgcatccggcaggggaaagaagaaaccctctcccgccaaaaa 283
Score = 44.1 bits (22), Expect = 0.023
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 192 ggggaagctcaagttattcaggaaca 217
||||||||||||||||||||| ||||
Sbjct: 485 ggggaagctcaagttattcagaaaca 510
>gb|CX622403.1|CX622403 GABR1_63_F05.g2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_63_F05_A002 5', mRNA sequence
Length = 772
Score = 202 bits (102), Expect = 4e-050
Identities = 114/118 (96%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 417 aggcgtaccggccgtgccctggcttcgtcgcgtccggcggccgctatcggcgccagggcc 476
Query: 61 aaagcatggacgacgttgcatccggcagggggaaaaagaaaccctctcccgccaaaaa 118
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 477 aaagcatggacgacgttgcatccggcaggggaaagaagaaaccctctcccgccaaaaa 534
Score = 44.1 bits (22), Expect = 0.023
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 192 ggggaagctcaagttattcaggaaca 217
||||||||||||||||||||| ||||
Sbjct: 736 ggggaagctcaagttattcagaaaca 761
>gb|CW122347.1|CW122347 104_501_11110608_148_34676_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110608, DNA
sequence
Length = 439
Score = 194 bits (98), Expect = 1e-047
Identities = 113/118 (95%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 181 aggcgtaccggccgtgccctggcttcgtcgcgtccggcggccgctatcggcgccagggcc 240
Query: 61 aaagcatggacgacgttgcatccggcagggggaaaaagaaaccctctcccgccaaaaa 118
||||||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct: 241 aaagcatggacgacgttgcatccggcaggagaaagaagaaaccctctcccgccaaaaa 298
>gb|CN149206.1|CN149206 WOUND1_61_G12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_61_G12_A002 3', mRNA sequence
Length = 725
Score = 194 bits (98), Expect = 1e-047
Identities = 113/118 (95%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct: 135 aggcgtaccggccgtgccctggtttcgtcgcgtccggcggccgctatcggcgccagggcc 194
Query: 61 aaagcatggacgacgttgcatccggcagggggaaaaagaaaccctctcccgccaaaaa 118
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 195 aaagcatggacgacgttgcatccggcaggggaaagaagaaaccctctcccgccaaaaa 252
Score = 44.1 bits (22), Expect = 0.023
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 295 agtagcttggaacatctgactg 316
||||||||||||||||||||||
Sbjct: 606 agtagcttggaacatctgactg 627
Score = 44.1 bits (22), Expect = 0.023
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 192 ggggaagctcaagttattcaggaaca 217
||||||||||||||||||||| ||||
Sbjct: 454 ggggaagctcaagttattcagaaaca 479
>gb|CW225654.1|CW225654 104_663_11204471_116_37207_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204471, DNA
sequence
Length = 569
Score = 186 bits (94), Expect = 2e-045
Identities = 112/118 (94%)
Strand = Plus / Plus
Query: 1 aggcgtaccggccgtgccccggcttcgtcgcgtccggcggccgctaccggcgccagggcc 60
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 193 aggcgtaccggccgtgccctggcttcgtcgcgtccggcggccgctatcggcgccagggcc 252
Query: 61 aaagcatggacgacgttgcatccggcagggggaaaaagaaaccctctcccgccaaaaa 118
||||||||||| ||||||||||| ||||||| || |||||||||||||||||||||||
Sbjct: 253 aaagcatggacaacgttgcatccagcaggggaaagaagaaaccctctcccgccaaaaa 310
>gb|BI211968.1|BI211968 IP1_62_G05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 527
Score = 137 bits (69), Expect = 2e-030
Identities = 75/77 (97%)
Strand = Plus / Minus
Query: 842 tagtagccctgcatcacggcctggctccgcacgcagatctcccccggcgggttcttgggc 901
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 527 tagtagccctgcatcacggcctggctccgcacgcagatctccccgggcgtgttcttgggc 468
Query: 902 agcgaccgccccgtgtc 918
|||||||||||||||||
Sbjct: 467 agcgaccgccccgtgtc 451
>gb|CW380206.1|CW380206 fsbb001f059o07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f059o07, DNA
sequence
Length = 683
Score = 115 bits (58), Expect = 7e-024
Identities = 88/98 (89%)
Strand = Plus / Plus
Query: 701 acctggaagcccttgtacttgatgagctccttgatgcggtccacgatgaacacgtcgccg 760
||||||||||||||| |||||||||||||||||| |||||| |||||||| || ||| ||
Sbjct: 196 acctggaagcccttgaacttgatgagctccttgacgcggtcgacgatgaagacctcgtcg 255
Query: 761 tcgtcgtcgatgtacccgacgtcgcccgtgtggagcca 798
|||||||||| ||| |||| |||||| |||||||||||
Sbjct: 256 tcgtcgtcgacgtagccgatgtcgccggtgtggagcca 293
>gb|CD227544.1|CD227544 CCC1_52_E04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_52_E04_A007 3', mRNA sequence
Length = 547
Score = 115 bits (58), Expect = 7e-024
Identities = 64/66 (96%)
Strand = Plus / Plus
Query: 53 ccagggccaaagcatggacgacgttgcatccggcagggggaaaaagaaaccctctcccgc 112
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 1 ccagggccaaagcatggacgacgttgcatccggcaggggaaagaagaaaccctctcccgc 60
Query: 113 caaaaa 118
||||||
Sbjct: 61 caaaaa 66
Score = 44.1 bits (22), Expect = 0.023
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 295 agtagcttggaacatctgactg 316
||||||||||||||||||||||
Sbjct: 420 agtagcttggaacatctgactg 441
Score = 44.1 bits (22), Expect = 0.023
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 192 ggggaagctcaagttattcaggaaca 217
||||||||||||||||||||| ||||
Sbjct: 268 ggggaagctcaagttattcagaaaca 293
>gb|CW071495.1|CW071495 104_323_10591543_114_30471 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591543, DNA
sequence
Length = 740
Score = 89.7 bits (45), Expect = 4e-016
Identities = 105/125 (84%)
Strand = Plus / Minus
Query: 677 atggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatg 736
|||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||
Sbjct: 592 atggcctcgagctccgccggagcgacttggaaccccttgtacttgatgagctccttgagc 533
Query: 737 cggtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagc 796
| ||| |||||||| | ||| |||||||||||| |||||| | ||| || ||||| |||
Sbjct: 532 ctgtcgacgatgaagatctcgtcgtcgtcgtcgacgtacccaatgtctccggtgtgcagc 473
Query: 797 caccc 801
|||||
Sbjct: 472 caccc 468
>gb|CW077966.1|CW077966 104_386_10894698_116_31912_378 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894698, DNA
sequence
Length = 739
Score = 89.7 bits (45), Expect = 4e-016
Identities = 105/125 (84%)
Strand = Plus / Minus
Query: 677 atggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatg 736
|||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||
Sbjct: 656 atggcctcgagctccgccggagcgacttggaaccccttgtacttgatgagctccttgagc 597
Query: 737 cggtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagc 796
| ||| |||||||| | ||| |||||||||||| |||||| | ||| || ||||| |||
Sbjct: 596 ctgtcgacgatgaagatctcgtcgtcgtcgtcgacgtacccaatgtctccggtgtgcagc 537
Query: 797 caccc 801
|||||
Sbjct: 536 caccc 532
>gb|CW077967.1|CW077967 104_386_10894698_148_31911_378 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894698, DNA
sequence
Length = 748
Score = 89.7 bits (45), Expect = 4e-016
Identities = 105/125 (84%)
Strand = Plus / Plus
Query: 677 atggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatg 736
|||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||
Sbjct: 222 atggcctcgagctccgccggagcgacttggaaccccttgtacttgatgagctccttgagc 281
Query: 737 cggtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagc 796
| ||| |||||||| | ||| |||||||||||| |||||| | ||| || ||||| |||
Sbjct: 282 ctgtcgacgatgaagatctcgtcgtcgtcgtcgacgtacccaatgtctccggtgtgcagc 341
Query: 797 caccc 801
|||||
Sbjct: 342 caccc 346
>gb|CW128046.1|CW128046 104_509_11113781_116_34744_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11113781, DNA
sequence
Length = 650
Score = 89.7 bits (45), Expect = 4e-016
Identities = 105/125 (84%)
Strand = Plus / Plus
Query: 677 atggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatg 736
|||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||
Sbjct: 478 atggcctcgagctccgccggagcgacttggaaccccttgtacttgatgagctccttgagc 537
Query: 737 cggtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagc 796
| ||| |||||||| | ||| |||||||||||| |||||| | ||| || ||||| |||
Sbjct: 538 ctgtcgacgatgaagatctcgtcgtcgtcgtcgacgtaccccatgtctccggtgtgcagc 597
Query: 797 caccc 801
|||||
Sbjct: 598 caccc 602
>gb|CN129079.1|CN129079 RHOH1_33_H09.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_33_H09_A002 3', mRNA sequence
Length = 733
Score = 81.8 bits (41), Expect = 1e-013
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 677 atggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatg 736
|||||||| ||||| || || ||||| ||||| |||||||||||||||||||||||||
Sbjct: 378 atggcctcgagctccgccggagcgacttggaaccccttgtacttgatgagctccttgagc 319
Query: 737 cggtccacgatgaacacgtcgccgtcgtcgtcgatgtaccc 777
| ||| |||||||| | ||| |||||||||||| ||||||
Sbjct: 318 ctgtcgacgatgaagatctcgtcgtcgtcgtcgacgtaccc 278
>gb|CX606247.1|CX606247 ANR1_2_A04.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_2_A04_A002 3', mRNA sequence
Length = 632
Score = 71.9 bits (36), Expect = 1e-010
Identities = 75/88 (85%)
Strand = Plus / Minus
Query: 661 cgggtgagacagcaggatggcctccagctcggcaggggcgacctggaagcccttgtactt 720
|||||| | ||||||||| ||||||||||| || || ||||| || ||||| ||| |||
Sbjct: 317 cgggtgcgtcagcaggatcgcctccagctccgccggtgcgacttgaaagcctttggtctt 258
Query: 721 gatgagctccttgatgcggtccacgatg 748
|||||||||||||| |||||| ||||||
Sbjct: 257 gatgagctccttgaggcggtcgacgatg 230
>gb|CW134050.1|CW134050 104_518_11117099_148_34816_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117099, DNA
sequence
Length = 664
Score = 69.9 bits (35), Expect = 4e-010
Identities = 98/119 (82%)
Strand = Plus / Plus
Query: 680 gcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcgg 739
||||| |||||||| || | |||||||| |||||||||||||||| |||||||| | |
Sbjct: 375 gcctcgagctcggccggcggcacctggaaccccttgtacttgatgatctccttgagcctg 434
Query: 740 tccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagcca 798
|| |||||||| | ||| |||||||||||| || |||| |||||| ||||| |||||
Sbjct: 435 tcgacgatgaagatctcgtcgtcgtcgtcgacatagccgatgtcgccggtgtgcagcca 493
>gb|CW194292.1|CW194292 104_617_11180020_148_36790_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11180020, DNA
sequence
Length = 721
Score = 69.9 bits (35), Expect = 4e-010
Identities = 98/119 (82%)
Strand = Plus / Minus
Query: 680 gcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcgg 739
||||| |||||||| || | |||||||| |||||||||||||||| |||||||| | |
Sbjct: 168 gcctcgagctcggccggcggcacctggaaccccttgtacttgatgatctccttgagcctg 109
Query: 740 tccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagcca 798
|| |||||||| | ||| |||||||||||| || |||| |||||| ||||| |||||
Sbjct: 108 tcgacgatgaagatctcgtcgtcgtcgtcgacatagccgatgtcgccggtgtgcagcca 50
>gb|CX613435.1|CX613435 GABR1_8_D10.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_8_D10_A002 3', mRNA sequence
Length = 693
Score = 69.9 bits (35), Expect = 4e-010
Identities = 98/119 (82%)
Strand = Plus / Minus
Query: 680 gcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcgg 739
||||| |||||||| || | |||||||| |||||||||||||||| |||||||| | |
Sbjct: 220 gcctcgagctcggccggcggcacctggaaccccttgtacttgatgatctccttgagcctg 161
Query: 740 tccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagcca 798
|| |||||||| | ||| |||||||||||| || |||| |||||| ||||| |||||
Sbjct: 160 tcgacgatgaagatctcgtcgtcgtcgtcgacatagccgatgtcgccggtgtgcagcca 102
>gb|CW034153.1|CW034153 104_264_10502381_115_30380 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502381, DNA
sequence
Length = 541
Score = 61.9 bits (31), Expect = 1e-007
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 680 gcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcgg 739
||||| |||||||| || | |||||||| |||||||||||||||| |||||||| | |
Sbjct: 437 gcctcgagctcggccggcggcacctggaaccccttgtacttgatgatctccttgagcctg 496
Query: 740 tccacgatgaacacgtcgccgtcgtcgtcga 770
|| |||||||| | ||| ||||||||||||
Sbjct: 497 tcgacgatgaagatctcgtcgtcgtcgtcga 527
>gb|CD235658.1|CD235658 SS1_37_F06.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_37_F06_A012 3', mRNA sequence
Length = 515
Score = 61.9 bits (31), Expect = 1e-007
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 680 gcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttga 734
||||| |||||||| || | ||||||||||||||| ||||||||||||||||||
Sbjct: 55 gcctcgagctcggccggcggcacctggaagcccttgaacttgatgagctccttga 1
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 452 ctccgcaggatcttgccggacaccgacttggggatgg 488
|||| ||||||||| |||||| |||||||||||||||
Sbjct: 283 ctcctcaggatcttcccggacgccgacttggggatgg 247
>gb|BE359084.1|BE359084 DG1_38_H02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 384
Score = 60.0 bits (30), Expect = 4e-007
Identities = 96/118 (81%)
Strand = Plus / Minus
Query: 680 gcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcgg 739
||||| |||||||| || | ||||| || |||||||||||||||| |||||||| | |
Sbjct: 118 gcctcgagctcggccggcggcacctgtaaccccttgtacttgatgatctccttgagcctg 59
Query: 740 tccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagcc 797
|| |||||||| | ||| |||||||||||| || |||| |||||| ||||| ||||
Sbjct: 58 tcgacgatgaagatctcgtcgtcgtcgtcgacatagccgatgtcgccggtgtgcagcc 1
>gb|CW471409.1|CW471409 fsbb001f225e14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f225e14, DNA
sequence
Length = 182
Score = 56.0 bits (28), Expect = 6e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 710 cccttgtacttgatgagctccttgatgcggtccacgatgaacacgtcgccgtcgtcgtcg 769
||||||||||||||||||||| ||| | ||| ||||||| | ||| ||||||||| |
Sbjct: 177 cccttgtacttgatgagctccctgagcctgtcgccgatgaagatctcgtcgtcgtcgtag 118
Query: 770 atgtacccgacgtcgcccgtgtggagccaccc 801
| |||||| ||||| || ||||| ||||||||
Sbjct: 117 acgtacccaacgtctccggtgtgcagccaccc 86
>gb|BE597474.1|BE597474 PI1_70_A05.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 492
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 gcgtaccggccgtgccccggcttcgtcgcgt 33
||||||||||||||||| |||||||||||||
Sbjct: 462 gcgtaccggccgtgccctggcttcgtcgcgt 492
>gb|CD232716.1|CD232716 SS1_1_H12.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_1_H12_A012 3', mRNA sequence
Length = 559
Score = 54.0 bits (27), Expect = 2e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 680 gcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttga 734
||||| |||||||| || | |||||||| |||||||||||||||| ||||||||
Sbjct: 63 gcctcgagctcggccggcggcacctggaaccccttgtacttgatgatctccttga 9
>gb|CF429879.1|CF429879 PH1_25_E11.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_E11_A002 3', mRNA sequence
Length = 591
Score = 54.0 bits (27), Expect = 2e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 680 gcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttga 734
||||| |||||||| || | |||||||| |||||||||||||||| ||||||||
Sbjct: 63 gcctcgagctcggccggcggcacctggaaccccttgtacttgatgatctccttga 9
>gb|AI724956.1|AI724956 RHIZ1_31_H10.y3_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 373
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 452 ctccgcaggatcttgccggacaccgacttggggatgg 488
|||| ||||||||| |||||| |||||||||||||||
Sbjct: 135 ctcctcaggatcttcccggacgccgacttggggatgg 99
>gb|CW073480.1|CW073480 104_335_10779929_114_31363_329 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779929, DNA
sequence
Length = 743
Score = 48.1 bits (24), Expect = 0.001
Identities = 96/120 (80%)
Strand = Plus / Minus
Query: 679 ggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcg 738
|||||| | ||| |||||||| ||||||| ||||||||||| |||| |||||| | |
Sbjct: 164 ggcctctatctctgcaggggccacctggagacccttgtactttatgatctccttaagcct 105
Query: 739 gtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagcca 798
||| |||||||| | ||| |||||||||| | | ||||||||||| ||||| |||||
Sbjct: 104 gtcgacgatgaagatctcgtcgtcgtcgtccacaaagccgacgtcgccggtgtgcagcca 45
>gb|CW345534.1|CW345534 104_848_11488543_148_36210_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488543, DNA
sequence
Length = 632
Score = 48.1 bits (24), Expect = 0.001
Identities = 96/120 (80%)
Strand = Plus / Minus
Query: 679 ggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcg 738
|||||| | ||| |||||||| ||||||| ||||||||||| |||| |||||| | |
Sbjct: 185 ggcctctatctctgcaggggccacctggagacccttgtactttatgatctccttaagcct 126
Query: 739 gtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagcca 798
||| |||||||| | ||| |||||||||| | | ||||||||||| ||||| |||||
Sbjct: 125 gtcgacgatgaagatctcgtcgtcgtcgtccacaaagccgacgtcgccggtgtgcagcca 66
>gb|BE597274.1|BE597274 PI1_70_C05.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 644
Score = 48.1 bits (24), Expect = 0.001
Identities = 96/120 (80%)
Strand = Plus / Minus
Query: 679 ggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcg 738
|||||| | ||| |||||||| ||||||| ||||||||||| |||| |||||| | |
Sbjct: 392 ggcctctatctctgcaggggccacctggagacccttgtactttatgatctccttaagcct 333
Query: 739 gtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagcca 798
||| |||||||| | ||| |||||||||| | | ||||||||||| ||||| |||||
Sbjct: 332 gtcgacgatgaagatctcgtcgtcgtcgtccacaaagccgacgtcgccggtgtgcagcca 273
>gb|CD229384.1|CD229384 CCC1_15_E01.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_15_E01_A007 3', mRNA sequence
Length = 613
Score = 48.1 bits (24), Expect = 0.001
Identities = 96/120 (80%)
Strand = Plus / Minus
Query: 679 ggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcg 738
|||||| | ||| |||||||| ||||||| ||||||||||| |||| |||||| | |
Sbjct: 354 ggcctctatctctgcaggggccacctggagacccttgtactttatgatctccttaagcct 295
Query: 739 gtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagcca 798
||| |||||||| | ||| |||||||||| | | ||||||||||| ||||| |||||
Sbjct: 294 gtcgacgatgaagatctcgtcgtcgtcgtccacaaagccgacgtcgccggtgtgcagcca 235
>gb|CD429206.1|CD429206 ETH1_3_C09.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_3_C09_A002 3', mRNA sequence
Length = 652
Score = 48.1 bits (24), Expect = 0.001
Identities = 96/120 (80%)
Strand = Plus / Minus
Query: 679 ggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcg 738
|||||| | ||| |||||||| ||||||| ||||||||||| |||| |||||| | |
Sbjct: 193 ggcctctatctctgcaggggccacctggagacccttgtactttatgatctccttaagcct 134
Query: 739 gtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagcca 798
||| |||||||| | ||| |||||||||| | | ||||||||||| ||||| |||||
Sbjct: 133 gtcgacgatgaagatctcgtcgtcgtcgtccacaaagccgacgtcgccggtgtgcagcca 74
>gb|CN129749.1|CN129749 RHOH1_37_E03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_37_E03_A002 3', mRNA sequence
Length = 850
Score = 48.1 bits (24), Expect = 0.001
Identities = 96/120 (80%)
Strand = Plus / Minus
Query: 679 ggcctccagctcggcaggggcgacctggaagcccttgtacttgatgagctccttgatgcg 738
|||||| | ||| |||||||| ||||||| ||||||||||| |||| |||||| | |
Sbjct: 586 ggcctctatctctgcaggggccacctggagacccttgtactttatgatctccttaagcct 527
Query: 739 gtccacgatgaacacgtcgccgtcgtcgtcgatgtacccgacgtcgcccgtgtggagcca 798
||| |||||||| | ||| |||||||||| | | ||||||||||| ||||| |||||
Sbjct: 526 gtcgacgatgaagatctcgtcgtcgtcgtccacaaagccgacgtcgccggtgtgcagcca 467
>gb|CW122346.1|CW122346 104_501_11110608_116_34680_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110608, DNA
sequence
Length = 539
Score = 44.1 bits (22), Expect = 0.023
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 295 agtagcttggaacatctgactg 316
||||||||||||||||||||||
Sbjct: 342 agtagcttggaacatctgactg 321
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 194 ggaagctcaagttattcaggaaca 217
||||||||||||||||||| ||||
Sbjct: 492 ggaagctcaagttattcagaaaca 469
>gb|CW146571.1|CW146571 104_539_11139064_116_34991_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11139064, DNA
sequence
Length = 696
Score = 44.1 bits (22), Expect = 0.023
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 708 agcccttgtacttgatgagctc 729
||||||||||||||||||||||
Sbjct: 441 agcccttgtacttgatgagctc 462
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 344,922
Number of Sequences: 832831
Number of extensions: 344922
Number of successful extensions: 104802
Number of sequences better than 0.5: 68
Number of HSP's better than 0.5 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104613
Number of HSP's gapped (non-prelim): 183
length of query: 919
length of database: 491,359,669
effective HSP length: 20
effective length of query: 899
effective length of database: 474,703,049
effective search space: 426758041051
effective search space used: 426758041051
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)