BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448385.2.9
(708 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI074397.1|BI074397 IP1_14_A06.g1_A002 Immature pannicle... 831 0.0
gb|CD221465.1|CD221465 CCC1_54_G09.g1_A007 Callus culture/c... 823 0.0
gb|CD221491.1|CD221491 CCC1_55_B04.b1_A007 Callus culture/c... 799 0.0
gb|CF486385.1|CF486385 POL1_37_H11.b1_A002 Pollen Sorghum b... 640 0.0
gb|CF072149.1|CF072149 FE1_5_G03.b1_A002 Iron-deficient see... 609 e-172
gb|CD228147.1|CD228147 CCC1_6_H12.b1_A007 Callus culture/ce... 595 e-168
gb|BE364560.2|BE364560 PI1_15_D10.g1_A002 Pathogen induced ... 537 e-151
gb|BM318596.1|BM318596 PI1_15_D10.b9_A002 Pathogen induced ... 537 e-151
gb|CD463658.1|CD463658 ETH1_45_F10.g1_A002 Ethylene-treated... 446 e-123
gb|BG465472.1|BG465472 RHIZ2_45_A05.b1_A003 Rhizome2 (RHIZ2... 444 e-123
gb|CD430843.1|CD430843 ETH1_5_H05.b1_A002 Ethylene-treated ... 444 e-123
gb|CF486477.1|CF486477 POL1_37_H11.g1_A002 Pollen Sorghum b... 414 e-114
gb|BG241639.1|BG241639 RHIZ2_49_A09.b1_A003 Rhizome2 (RHIZ2... 391 e-107
gb|BQ656038.1|BQ656038 pRC0336 Sorghum halepense rhizome cD... 373 e-101
gb|CD430892.1|CD430892 ETH1_5_H05.g1_A002 Ethylene-treated ... 367 e-100
gb|BG241329.1|BG241329 RHIZ2_49_A09.g1_A003 Rhizome2 (RHIZ2... 329 2e-088
gb|CF483901.1|CF483901 POL1_1_A08.g1_A002 Pollen Sorghum bi... 329 2e-088
gb|BG465822.1|BG465822 RHIZ2_45_A05.g1_A003 Rhizome2 (RHIZ2... 311 5e-083
gb|CF483829.1|CF483829 POL1_1_A08.b1_A002 Pollen Sorghum bi... 311 5e-083
gb|CW496914.1|CW496914 fsbb001f289g10f0 Sorghum methylation... 299 2e-079
gb|CF074392.1|CF074392 FE1_24_C12.b1_A002 Iron-deficient se... 278 7e-073
gb|CF757184.1|CF757184 DSAF1_14_G07.g1_A011 Drought-stresse... 244 9e-063
gb|CW092061.1|CW092061 104_454_10998922_114_33037_041 Sorgh... 198 5e-049
gb|CW119399.1|CW119399 104_496_11108746_148_34633_041 Sorgh... 198 5e-049
gb|CD208158.1|CD208158 HS1_31_B10.g1_A012 Heat-shocked seed... 190 1e-046
gb|CW421338.1|CW421338 fsbb001f130b20f0 Sorghum methylation... 188 5e-046
gb|AI724694.1|AI724694 RHIZ1_11_G11.y2_A001 Rhizome1 (RHIZ1... 163 3e-038
gb|AW564277.1|AW564277 LG1_289_E03.b1_A002 Light Grown 1 (L... 127 1e-027
gb|CW385819.1|CW385819 fsbb001f069h03k0 Sorghum methylation... 54 2e-005
gb|BZ330420.1|BZ330420 hv92b01.b1 WGS-SbicolorF (JM107 adap... 44 0.017
gb|CW279502.1|CW279502 104_754_11407111_148_35437_026 Sorgh... 44 0.017
gb|CW425952.1|CW425952 fsbb001f137c03f0 Sorghum methylation... 40 0.27
gb|CW425953.1|CW425953 fsbb001f137c03k0 Sorghum methylation... 40 0.27
>gb|BI074397.1|BI074397 IP1_14_A06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 683
Score = 831 bits (419), Expect = 0.0
Identities = 552/592 (93%), Gaps = 7/592 (1%)
Strand = Plus / Plus
Query: 52 ccgcagcgtcgccgaccttcacagccggt----tccttcctccgccaccatggggaagac 107
||||| ||||||||||| ||||||||||| |||| |||||||| |||||||||||||
Sbjct: 60 ccgcaacgtcgccgaccctcacagccggtggtctcctacctccgccgccatggggaagac 119
Query: 108 acgtggtatgggagctgggcgcaagctcaagacccaccgcaggaaccagaggtgggctga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 acgtggtatgggagctgggcgcaagctcaagacccaccgcaggaaccagaggtgggctga 179
Query: 168 caaagcatacaagaagagccacttgggcaatgagtggaaaaaaccttttgctggatcatc 227
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct: 180 caaagcatacaagaagagccacttgggcaatgagtggaaaaagccctttgctgggtcatc 239
Query: 228 tcacgccaagggcatcgttctggagaagattggtattgaggccaagcagccaaattcggc 287
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct: 240 tcacgccaagggcatcgttctggagaagattggtattgaggccaagcagccgaactctgc 299
Query: 288 catccgtaagtgtgcccgtgttcagctggtgaagaatggaaagaagattgctgcctttgt 347
||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 300 catccgtaagtgtgctcgtgttcagctggtgaagaatgggaagaagatcgctgcctttgt 359
Query: 348 gccgaatgatggttgcctaaactacatcgaggagaatgatgaggtgttgattgctggatt 407
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 360 gccgaatgatggttgcctgaactacatcgaggagaatgatgaggttttgattgctggatt 419
Query: 408 tggtcgtaagggtcatgctgtgggagacattcctggtgtcaggttcaaggttgttaaggt 467
|||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 420 tggtcgtaagggccatgctgtgggagatattcctggtgtcaggttcaaggttgtgaaggt 479
Query: 468 gtctggtgtgtcgctgcttgcactcttcaaggagaagaaggagaagccaaggtcttagat 527
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 480 atctggtgtgtcgctgcttgctctcttcaaggagaagaaggagaagccaaggtcttagat 539
Query: 528 cactttcggtagtcaagaatggtgtaaactgcccaaggctctattgtcaaagtt-aaagt 586
|||||| ||||||||||||| |||||||| || |||||||||| ||||| || |||||
Sbjct: 540 tgctttcgatagtcaagaatggagtaaactgtcc-aggctctattatcaaacttaaaagt 598
Query: 587 tctgctagcaactcagctgttaaatctgagctgtacctttttgttaacattg 638
| |||||||||| || |||||| ||||||||||| |||||||||||||||
Sbjct: 599 tgtgctagcaacagagatgttaattctgagctgta-ttttttgttaacattg 649
>gb|CD221465.1|CD221465 CCC1_54_G09.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_54_G09_A007 5', mRNA sequence
Length = 643
Score = 823 bits (415), Expect = 0.0
Identities = 551/592 (93%), Gaps = 7/592 (1%)
Strand = Plus / Plus
Query: 52 ccgcagcgtcgccgaccttcacagccggt----tccttcctccgccaccatggggaagac 107
||||| ||||||||||| ||||||||||| |||| |||||||| |||||||||||||
Sbjct: 44 ccgcaacgtcgccgaccctcacagccggtggtctcctacctccgccgccatggggaagac 103
Query: 108 acgtggtatgggagctgggcgcaagctcaagacccaccgcaggaaccagaggtgggctga 167
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 acgcggtatgggagctgggcgcaagctcaagacccaccgcaggaaccagaggtgggctga 163
Query: 168 caaagcatacaagaagagccacttgggcaatgagtggaaaaaaccttttgctggatcatc 227
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct: 164 caaagcatacaagaagagccacttgggcaatgagtggaaaaagccctttgctgggtcatc 223
Query: 228 tcacgccaagggcatcgttctggagaagattggtattgaggccaagcagccaaattcggc 287
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct: 224 tcacgccaagggcatcgttctggagaagattggtattgaggccaagcagccgaactctgc 283
Query: 288 catccgtaagtgtgcccgtgttcagctggtgaagaatggaaagaagattgctgcctttgt 347
||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 284 catccgtaagtgtgctcgtgttcagctggtgaagaatgggaagaagatcgctgcctttgt 343
Query: 348 gccgaatgatggttgcctaaactacatcgaggagaatgatgaggtgttgattgctggatt 407
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 344 gccgaatgatggttgcctgaactacatcgaggagaatgatgaggttttgattgctggatt 403
Query: 408 tggtcgtaagggtcatgctgtgggagacattcctggtgtcaggttcaaggttgttaaggt 467
|||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 404 tggtcgtaagggccatgctgtgggagatattcctggtgtcaggttcaaggttgtgaaggt 463
Query: 468 gtctggtgtgtcgctgcttgcactcttcaaggagaagaaggagaagccaaggtcttagat 527
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 464 atctggtgtgtcgctgcttgctctcttcaaggagaagaaggagaagccaaggtcttagat 523
Query: 528 cactttcggtagtcaagaatggtgtaaactgcccaaggctctattgtcaaagtt-aaagt 586
|||||| ||||||||||||| |||||||| || |||||||||| ||||| || |||||
Sbjct: 524 tgctttcgatagtcaagaatggagtaaactgtcc-aggctctattatcaaacttaaaagt 582
Query: 587 tctgctagcaactcagctgttaaatctgagctgtacctttttgttaacattg 638
| |||||||||| || |||||| ||||||||||| |||||||||||||||
Sbjct: 583 tgtgctagcaacagagatgttaattctgagctgta-ttttttgttaacattg 633
>gb|CD221491.1|CD221491 CCC1_55_B04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_55_B04_A007 3', mRNA sequence
Length = 623
Score = 799 bits (403), Expect = 0.0
Identities = 546/590 (92%), Gaps = 9/590 (1%)
Strand = Plus / Plus
Query: 95 ccatggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcaggaacc 154
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ccatggggaagacacgcggtatgggagctgggcgcaagctcaagacccaccgcaggaacc 64
Query: 155 agaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaacctt 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 65 agaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaagccct 124
Query: 215 ttgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggccaagc 274
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ttgctgggtcatctcacgccaagggcatcgttctggagaagattggtattgaggccaagc 184
Query: 275 agccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaagaaga 334
|||| || || ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 185 agccgaactctgccatccgtaagtgtgctcgtgttcagctggtgaagaatgggaagaaga 244
Query: 335 ttgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgaggtgt 394
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 245 tcgctgcctttgtgccgaatgatggttgcctgaactacatcgaggagaatgatgaggttt 304
Query: 395 tgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggttca 454
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 305 tgattgctggatttggtcgtaagggccatgctgtgggagatattcctggtgtcaggttca 364
Query: 455 aggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggagaagc 514
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 365 aggttgtgaaggtatctggtgtgtcgctgcttgctctcttcaaggagaagaaggagaagc 424
Query: 515 caaggtcttagatcactttcggtagtcaagaatggtgtaaactgcccaaggctctattgt 574
||||||||||||| |||||| ||||||||||||| |||||||| || |||||||||| |
Sbjct: 425 caaggtcttagattgctttcgatagtcaagaatggagtaaactgtcc-aggctctattat 483
Query: 575 caaagtt-aaagttctgctagcaactcagctgttaaatctgagctgtacctttttgttaa 633
|||| || |||||| |||||||||| || |||||| ||||||||||| ||||||||||
Sbjct: 484 caaacttaaaagttgtgctagcaacagagatgttaattctgagctgta-ttttttgttaa 542
Query: 634 cattgttacagtattacagagttctgtttccattttgaagatattaatat 683
||||| || | |||||| |||||||||||||||||||||||||
Sbjct: 543 cattgcta------tcgagagtttcgtttccattttgaagatattaatat 586
>gb|CF486385.1|CF486385 POL1_37_H11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_37_H11_A002 3', mRNA sequence
Length = 540
Score = 640 bits (323), Expect = 0.0
Identities = 477/522 (91%), Gaps = 11/522 (2%)
Strand = Plus / Plus
Query: 165 tgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaaccttttgctggatc 224
||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct: 1 tgacaaagcatacaagaagagccacttgggcaatgagtggaaaaagccctttgctgggtc 60
Query: 225 atctcacgccaagggcatcgttctggagaagattggtattgaggccaagcagccaaattc 284
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 61 atctcacgccaagggcatcgttctggagaagattggtattgaggccaagcagccgaactc 120
Query: 285 ggccatc-cgtaagtgtgcccgtgttcagctggtgaagaatggaaagaagattgctgcct 343
|||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct: 121 cgccatcncgtaagtgtgctcgtgttcagctggtgaagaatgggaagaagatcgctgcct 180
Query: 344 ttgtgccgaatgatggttgcctaaactacatcgag-gagaatgatgaggtgttgattgct 402
|||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||
Sbjct: 181 ttgtgccgaatgatggttgcctgaactacatcgagngagaatgatgaggttttgattgct 240
Query: 403 ggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggttcaaggttgtt 462
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 241 ggatttggtcgtaagggccatgctgtgggagatattcctggtgtcaggttcaaggttgtg 300
Query: 463 aaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggagaagccaaggtct 522
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 301 aaggtatctggtgtgtcgctgcttgctctcttcaaggagaagaaggagaagccaaggtct 360
Query: 523 tagatcactttcggtagtcaagaatggtgtaaactgcccaaggctctattgtcaaagtt- 581
||||| |||||| ||||||||||||| |||||||| || |||||||||| ||||| ||
Sbjct: 361 tagattgctttcgatagtcaagaatggagtaaactgtcc-aggctctattatcaaactta 419
Query: 582 aaagttctgctagcaactcagctgttaaatctgagctgtacctttttgttaacattgtta 641
|||||| |||||||||| || |||||| ||||||||||| ||||||||||||||| ||
Sbjct: 420 aaagttgtgctagcaacagagatgttaattctgagctgta-ttttttgttaacattgcta 478
Query: 642 cagtattacagagttctgtttccattttgaagatattaatat 683
| |||||| |||||||||||||||||||||||||
Sbjct: 479 ------tcgagagtttcgtttccattttgaagatattaatat 514
>gb|CF072149.1|CF072149 FE1_5_G03.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_5_G03_A002 3', mRNA sequence
Length = 467
Score = 609 bits (307), Expect = e-172
Identities = 415/447 (92%), Gaps = 3/447 (0%)
Strand = Plus / Plus
Query: 193 ggcaatgagtggaaaaaaccttttgctggatcatctcacgccaagggcatcgttctggag 252
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 ggcaatgagtggaaaaagccctttgctgggtcatctcacgccaagggcatcgttctggag 60
Query: 253 aagattggtattgaggccaagcagccaaattcggccatccgtaagtgtgcccgtgttcag 312
|||||||||||||||||||||||||| || || ||||||||||||||||| |||||||||
Sbjct: 61 aagattggtattgaggccaagcagccgaactctgccatccgtaagtgtgctcgtgttcag 120
Query: 313 ctggtgaagaatggaaagaagattgctgcctttgtgccgaatgatggttgcctaaactac 372
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 121 ctggtgaagaatgggaagaagatcgctgcctttgtgccgaatgatggttgcctgaactac 180
Query: 373 atcgaggagaatgatgaggtgttgattgctggatttggtcgtaagggtcatgctgtggga 432
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 181 atcgaggagaatgatgaggttttgattgctggatttggtcgtaagggccatgctgtggga 240
Query: 433 gacattcctggtgtcaggttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactc 492
|| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct: 241 gatattcctggtgtcaggttcaaggttgtgaaggtatctggtgtgtcgctgcttgctctc 300
Query: 493 ttcaaggagaagaaggagaagccaaggtcttagatcactttcggtagtcaagaatggtgt 552
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||
Sbjct: 301 ttcaaggagaagaaggagaagccaaggtcttagattgctttcgatagtcaagaatggagt 360
Query: 553 aaactgcccaaggctctattgtcaaagtt-aaagttctgctagcaactcagctgttaaat 611
|||||| || |||||||||| ||||| || |||||| |||||||||| || |||||| |
Sbjct: 361 aaactgtcc-aggctctattatcaaacttaaaagttgtgctagcaacagagatgttaatt 419
Query: 612 ctgagctgtacctttttgttaacattg 638
|||||||||| |||||||||||||||
Sbjct: 420 ctgagctgta-ttttttgttaacattg 445
>gb|CD228147.1|CD228147 CCC1_6_H12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_6_H12_A007 3', mRNA sequence
Length = 647
Score = 595 bits (300), Expect = e-168
Identities = 399/432 (92%)
Strand = Plus / Plus
Query: 96 catggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcaggaacca 155
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 18 catggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgaaggaacca 77
Query: 156 gaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaaccttt 215
| ||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct: 78 gcggtgggctgacaaggcatacaagaagagccatttgggcaatgagtggaagaaaccctt 137
Query: 216 tgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggccaagca 275
|| || ||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 138 cgcggggtcatcccatgccaagggcattgttctggagaagattggtattgaggccaagca 197
Query: 276 gccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaagaagat 335
||||||||| || |||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 198 gccaaattctgctatccgtaagtgtgctcgtgttcagcttgtgaagaatggcaagaagat 257
Query: 336 tgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgaggtgtt 395
||||||||| ||||| |||||||||||| | |||||||||||||| ||||| ||||||||
Sbjct: 258 tgctgccttcgtgccaaatgatggttgcttgaactacatcgaggaaaatgacgaggtgtt 317
Query: 396 gattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggttcaa 455
||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||
Sbjct: 318 gattgctggatttggtcgtaagggtcacgctgtgggagatattcctggtgtccggttcaa 377
Query: 456 ggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggagaagcc 515
|||||| ||||| || |||||||| |||||||| || |||||||||||||| ||||||||
Sbjct: 378 ggttgtcaaggtctcgggtgtgtctctgcttgcccttttcaaggagaagaaagagaagcc 437
Query: 516 aaggtcttagat 527
||||||||||||
Sbjct: 438 aaggtcttagat 449
>gb|BE364560.2|BE364560 PI1_15_D10.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 436
Score = 537 bits (271), Expect = e-151
Identities = 370/399 (92%), Gaps = 3/399 (0%)
Strand = Plus / Plus
Query: 241 atcgttctggagaagattggtattgaggccaagcagccaaattcggccatccgtaagtgt 300
|||||||||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct: 9 atcgttctggagaagattggtattgaggccaagcagccgaactctgccatccgtaagtgt 68
Query: 301 gcccgtgttcagctggtgaagaatggaaagaagattgctgcctttgtgccgaatgatggt 360
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 69 gctcgtgttcagctggtgaagaatgggaagaagatcgctgcctttgtgccgaatgatggt 128
Query: 361 tgcctaaactacatcgaggagaatgatgaggtgttgattgctggatttggtcgtaagggt 420
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 129 tgcctgaactacatcgaggagaatgatgaggttttgattgctggatttggtcgtaagggc 188
Query: 421 catgctgtgggagacattcctggtgtcaggttcaaggttgttaaggtgtctggtgtgtcg 480
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 189 catgctgtgggagatattcctggtgtcaggttcaaggttgtgaaggtatctggtgtgtcg 248
Query: 481 ctgcttgcactcttcaaggagaagaaggagaagccaaggtcttagatcactttcggtagt 540
|||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 249 ctgcttgctctcttcaaggagaagaaggagaagccaaggtcttagattgctttcgatagt 308
Query: 541 caagaatggtgtaaactgcccaaggctctattgtcaaagtt-aaagttctgctagcaact 599
||||||||| |||||||| || |||||||||| ||||| || |||||| ||||||||||
Sbjct: 309 caagaatggagtaaactgtcc-aggctctattatcaaacttaaaagttgtgctagcaaca 367
Query: 600 cagctgttaaatctgagctgtacctttttgttaacattg 638
|| |||||| ||||||||||| |||||||||||||||
Sbjct: 368 gagatgttaattctgagctgta-ttttttgttaacattg 405
>gb|BM318596.1|BM318596 PI1_15_D10.b9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 461
Score = 537 bits (271), Expect = e-151
Identities = 370/399 (92%), Gaps = 3/399 (0%)
Strand = Plus / Plus
Query: 241 atcgttctggagaagattggtattgaggccaagcagccaaattcggccatccgtaagtgt 300
|||||||||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct: 9 atcgttctggagaagattggtattgaggccaagcagccgaactctgccatccgtaagtgt 68
Query: 301 gcccgtgttcagctggtgaagaatggaaagaagattgctgcctttgtgccgaatgatggt 360
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 69 gctcgtgttcagctggtgaagaatgggaagaagatcgctgcctttgtgccgaatgatggt 128
Query: 361 tgcctaaactacatcgaggagaatgatgaggtgttgattgctggatttggtcgtaagggt 420
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 129 tgcctgaactacatcgaggagaatgatgaggttttgattgctggatttggtcgtaagggc 188
Query: 421 catgctgtgggagacattcctggtgtcaggttcaaggttgttaaggtgtctggtgtgtcg 480
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 189 catgctgtgggagatattcctggtgtcaggttcaaggttgtgaaggtatctggtgtgtcg 248
Query: 481 ctgcttgcactcttcaaggagaagaaggagaagccaaggtcttagatcactttcggtagt 540
|||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 249 ctgcttgctctcttcaaggagaagaaggagaagccaaggtcttagattgctttcgatagt 308
Query: 541 caagaatggtgtaaactgcccaaggctctattgtcaaagtt-aaagttctgctagcaact 599
||||||||| |||||||| || |||||||||| ||||| || |||||| ||||||||||
Sbjct: 309 caagaatggagtaaactgtcc-aggctctattatcaaacttaaaagttgtgctagcaaca 367
Query: 600 cagctgttaaatctgagctgtacctttttgttaacattg 638
|| |||||| ||||||||||| |||||||||||||||
Sbjct: 368 gagatgttaattctgagctgta-ttttttgttaacattg 405
>gb|CD463658.1|CD463658 ETH1_45_F10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_45_F10_A002 5', mRNA sequence
Length = 662
Score = 446 bits (225), Expect = e-123
Identities = 378/429 (88%)
Strand = Plus / Plus
Query: 96 catggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcaggaacca 155
|||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 99 catgggtaagacccgtggtatgggagctgggcgcaagctcaagacccacagaaggaacca 158
Query: 156 gaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaaccttt 215
|||||||||||||||||| |||||||||||||| | ||||| |||||||| ||||| ||
Sbjct: 159 gaggtgggctgacaaagcctacaagaagagccatcttggcaacgagtggaagaaaccctt 218
Query: 216 tgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggccaagca 275
|||||| ||||||||||| ||||| ||||| || |||||||| || |||||||| |||||
Sbjct: 219 tgctggttcatctcacgcaaagggaatcgtccttgagaagatcggcattgaggctaagca 278
Query: 276 gccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaagaagat 335
||| || || || |||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 279 gcctaactctgctatccgtaagtgtgctcgtgtccagctggtgaagaatgggaagaagat 338
Query: 336 tgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgaggtgtt 395
||||||||||||||| || ||||||||| | |||||||| ||||||||||| |||||| |
Sbjct: 339 tgctgcctttgtgccaaacgatggttgcttgaactacattgaggagaatgacgaggtgct 398
Query: 396 gattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggttcaa 455
|||||| || || ||||||||||| || ||||||||||| |||||||||||| | |||||
Sbjct: 399 gattgcggggttcggtcgtaagggccacgctgtgggagatattcctggtgtccgtttcaa 458
Query: 456 ggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggagaagcc 515
||| || ||||| ||||| || || ||||| || ||||||||||||||||||||||||||
Sbjct: 459 ggtcgtgaaggtctctggcgtttccctgctcgccctcttcaaggagaagaaggagaagcc 518
Query: 516 aaggtctta 524
|| |||||
Sbjct: 519 gagatctta 527
>gb|BG465472.1|BG465472 RHIZ2_45_A05.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 520
Score = 444 bits (224), Expect = e-123
Identities = 371/420 (88%)
Strand = Plus / Plus
Query: 96 catggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcaggaacca 155
|||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 93 catgggtaagacacgtggtatgggagctgggcgcaagctcaagacccacagaaggaacca 152
Query: 156 gaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaaccttt 215
|||||||||||||||||| |||||||||||||| | ||||| |||||||| ||||| ||
Sbjct: 153 gaggtgggctgacaaagcctacaagaagagccatcttggcaacgagtggaagaaaccctt 212
Query: 216 tgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggccaagca 275
|||||| ||||||||||| ||||| ||||| || || ||||| || |||||||| |||||
Sbjct: 213 tgctggttcatctcacgcaaagggaatcgtccttgaaaagatcggcattgaggctaagca 272
Query: 276 gccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaagaagat 335
||| || || || |||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 273 gcctaactctgctatccgtaagtgtgctcgtgtccagctggtgaagaatgggaagaagat 332
Query: 336 tgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgaggtgtt 395
||||||||||||||| || ||||||||| | |||||||| ||||| ||||| |||||| |
Sbjct: 333 tgctgcctttgtgccaaacgatggttgcttgaactacattgaggaaaatgacgaggtgct 392
Query: 396 gattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggttcaa 455
|||||| || || ||||||||||| || ||||||||||| |||||||||||| | |||||
Sbjct: 393 gattgcggggttcggtcgtaagggccacgctgtgggagatattcctggtgtccgtttcaa 452
Query: 456 ggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaaggagaagcc 515
||| || ||||| |||||||| || ||||| || ||||||||||||||||||||||||||
Sbjct: 453 ggtcgtgaaggtctctggtgtttccctgctcgccctcttcaaggagaagaaggagaagcc 512
>gb|CD430843.1|CD430843 ETH1_5_H05.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_5_H05_A002 3', mRNA sequence
Length = 698
Score = 444 bits (224), Expect = e-123
Identities = 311/336 (92%), Gaps = 3/336 (0%)
Strand = Plus / Plus
Query: 304 cgtgttcagctggtgaagaatggaaagaagattgctgcctttgtgccgaatgatggttgc 363
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 329 cgtgttcagctggtgaagaatgggaagaagatcgctgcctttgtgccgaatgatggttgc 388
Query: 364 ctaaactacatcgaggagaatgatgaggtgttgattgctggatttggtcgtaagggtcat 423
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 389 ctgaactacatcgaggagaatgatgaggttttgattgctggatttggtcgtaagggccat 448
Query: 424 gctgtgggagacattcctggtgtcaggttcaaggttgttaaggtgtctggtgtgtcgctg 483
||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 449 gctgtgggagatattcctggtgtcaggttcaaggttgtgaaggtatctggtgtgtcgctg 508
Query: 484 cttgcactcttcaaggagaagaaggagaagccaaggtcttagatcactttcggtagtcaa 543
||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 509 cttgctctcttcaaggagaagaaggagaagccaaggtcttagattgctttcgatagtcaa 568
Query: 544 gaatggtgtaaactgcccaaggctctattgtcaaagtt-aaagttctgctagcaactcag 602
|||||| |||||||| || |||||||||| ||||| || |||||| |||||||||| ||
Sbjct: 569 gaatggagtaaactgtcc-aggctctattatcaaacttaaaagttgtgctagcaacagag 627
Query: 603 ctgttaaatctgagctgtacctttttgttaacattg 638
|||||| ||||||||||| |||||||||||||||
Sbjct: 628 atgttaattctgagctgta-ttttttgttaacattg 662
>gb|CF486477.1|CF486477 POL1_37_H11.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_37_H11_A002 5', mRNA sequence
Length = 665
Score = 414 bits (209), Expect = e-114
Identities = 248/261 (95%)
Strand = Plus / Plus
Query: 118 ggagctgggcgcaagctcaagacccaccgcaggaaccagaggtgggctgacaaagcatac 177
||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ggagcagggtgcgagctcaagacccaccgcaggaaccagaggtgggctgacaaagcatac 464
Query: 178 aagaagagccacttgggcaatgagtggaaaaaaccttttgctggatcatctcacgccaag 237
|||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct: 465 aagaagagccacttgggcaatgagtggaaaaagccctttgctgggtcatctcacgccaag 524
Query: 238 ggcatcgttctggagaagattggtattgaggccaagcagccaaattcggccatccgtaag 297
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct: 525 ggcatcgttctggagaagattggtattgaggccaagcagccgaactccgccatccgtaag 584
Query: 298 tgtgcccgtgttcagctggtgaagaatggaaagaagattgctgcctttgtgccgaatgat 357
||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 585 tgtgctcgtgttcagctggtgaagaatgggaagaagatcgctgcctttgtgccgaatgat 644
Query: 358 ggttgcctaaactacatcgag 378
|||||||| ||||||||||||
Sbjct: 645 ggttgcctgaactacatcgag 665
>gb|BG241639.1|BG241639 RHIZ2_49_A09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 453
Score = 391 bits (197), Expect = e-107
Identities = 320/361 (88%)
Strand = Plus / Plus
Query: 96 catggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcaggaacca 155
|||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 93 catgggtaagacacgtggtatgggagctgggcgcaagctcaagacccacagaaggaacca 152
Query: 156 gaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaaccttt 215
|||||||||||||||||| |||||||||||||| | ||||| |||||||| ||||| ||
Sbjct: 153 gaggtgggctgacaaagcctacaagaagagccatcttggcaacgagtggaagaaaccctt 212
Query: 216 tgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggccaagca 275
|||||| ||||||||||| ||||| ||||| || || ||||| || |||||||| |||||
Sbjct: 213 tgctggttcatctcacgcaaagggaatcgtccttgaaaagatcggcattgaggctaagca 272
Query: 276 gccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaagaagat 335
||| || || || |||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 273 gcctaactctgctatccgtaagtgtgctcgtgtccagctggtgaagaatgggaagaagat 332
Query: 336 tgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgaggtgtt 395
||||||||||||||| || ||||||||| | |||||||| ||||||||||| |||||| |
Sbjct: 333 tgctgcctttgtgccaaacgatggttgcttgaactacattgaggagaatgacgaggtgct 392
Query: 396 gattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtcaggttcaa 455
|||||| || || ||||||||||| || ||||||||||| |||||||||||| | |||||
Sbjct: 393 gattgcggggttcggtcgtaagggccacgctgtgggagatattcctggtgtccgtttcaa 452
Query: 456 g 456
|
Sbjct: 453 g 453
>gb|BQ656038.1|BQ656038 pRC0336 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC0336, mRNA sequence
Length = 463
Score = 373 bits (188), Expect = e-101
Identities = 254/276 (92%)
Strand = Plus / Minus
Query: 252 gaagattggtattgaggccaagcagccaaattcggccatccgtaagtgtgcccgtgttca 311
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct: 460 gaagattggtattgaggccaagcagccaaattctgctatccgtaagtgtgctcgtgttca 401
Query: 312 gctggtgaagaatggaaagaagattgctgcctttgtgccgaatgatggttgcctaaacta 371
||| ||||||||||| ||||||||||||||||| ||||| |||||||||||| | |||||
Sbjct: 400 gcttgtgaagaatggcaagaagattgctgccttcgtgccaaatgatggttgcttgaacta 341
Query: 372 catcgaggagaatgatgaggtgttgattgctggatttggtcgtaagggtcatgctgtggg 431
||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 340 catcgaggaaaatgacgaggtgttgattgctggatttggtcgtaagggtcacgctgtggg 281
Query: 432 agacattcctggtgtcaggttcaaggttgttaaggtgtctggtgtgtcgctgcttgcact 491
||| |||||||||||| |||||||||| || ||||| || |||||||| |||||||| ||
Sbjct: 280 agatattcctggtgtccggttcaaggtcgtcaaggtctcgggtgtgtctctgcttgccct 221
Query: 492 cttcaaggagaagaaggagaagccaaggtcttagat 527
|||||||||||||| ||||||||||||||||||||
Sbjct: 220 tttcaaggagaagaaagagaagccaaggtcttagat 185
>gb|CD430892.1|CD430892 ETH1_5_H05.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_5_H05_A002 5', mRNA sequence
Length = 705
Score = 367 bits (185), Expect = e-100
Identities = 231/246 (93%), Gaps = 4/246 (1%)
Strand = Plus / Plus
Query: 52 ccgcagcgtcgccgaccttcacagccggt----tccttcctccgccaccatggggaagac 107
||||| ||||||||||| ||||||||||| |||| |||||||| |||||||||||||
Sbjct: 44 ccgcaacgtcgccgaccctcacagccggtggtctcctacctccgccgccatggggaagac 103
Query: 108 acgtggtatgggagctgggcgcaagctcaagacccaccgcaggaaccagaggtgggctga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 acgtggtatgggagctgggcgcaagctcaagacccaccgcaggaaccagaggtgggctga 163
Query: 168 caaagcatacaagaagagccacttgggcaatgagtggaaaaaaccttttgctggatcatc 227
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct: 164 caaagcatacaagaagagccacttgggcaatgagtggaaaaagccctttgctgggtcatc 223
Query: 228 tcacgccaagggcatcgttctggagaagattggtattgaggccaagcagccaaattcggc 287
||||||||||||||||||||||||| ||||||||||||||||||||||||| || || ||
Sbjct: 224 tcacgccaagggcatcgttctggaggagattggtattgaggccaagcagccgaactctgc 283
Query: 288 catccg 293
||||||
Sbjct: 284 catccg 289
>gb|BG241329.1|BG241329 RHIZ2_49_A09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 536
Score = 329 bits (166), Expect = 2e-088
Identities = 304/350 (86%)
Strand = Plus / Plus
Query: 175 tacaagaagagccacttgggcaatgagtggaaaaaaccttttgctggatcatctcacgcc 234
|||||||||||||| | ||||| |||||||| ||||| |||||||| |||||||||||
Sbjct: 2 tacaagaagagccatcttggcaacgagtggaagaaaccctttgctggttcatctcacgca 61
Query: 235 aagggcatcgttctggagaagattggtattgaggccaagcagccaaattcggccatccgt 294
||||| ||||| || || ||||| || |||||||| |||||||| || || || ||||||
Sbjct: 62 aagggaatcgtccttgaaaagatcggcattgaggctaagcagcctaactctgctatccgt 121
Query: 295 aagtgtgcccgtgttcagctggtgaagaatggaaagaagattgctgcctttgtgccgaat 354
|||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 122 aagtgtgctcgtgtccagctggtgaagaatgggaagaagattgctgcctttgtgccaaac 181
Query: 355 gatggttgcctaaactacatcgaggagaatgatgaggtgttgattgctggatttggtcgt 414
||||||||| | |||||||| ||||||||||| |||||| ||||||| || || ||||||
Sbjct: 182 gatggttgcttgaactacattgaggagaatgacgaggtgctgattgcggggttcggtcgt 241
Query: 415 aagggtcatgctgtgggagacattcctggtgtcaggttcaaggttgttaaggtgtctggt 474
||||| || ||||||||||| |||||||||||| | |||||||| || ||||| ||||||
Sbjct: 242 aagggccacgctgtgggagatattcctggtgtccgtttcaaggtcgtgaaggtctctggt 301
Query: 475 gtgtcgctgcttgcactcttcaaggagaagaaggagaagccaaggtctta 524
|| || ||||| || |||||||||||||||||||||||||| || |||||
Sbjct: 302 gtttccctgctcgccctcttcaaggagaagaaggagaagccgagatctta 351
>gb|CF483901.1|CF483901 POL1_1_A08.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_1_A08_A002 5', mRNA sequence
Length = 411
Score = 329 bits (166), Expect = 2e-088
Identities = 271/306 (88%)
Strand = Plus / Plus
Query: 96 catggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcaggaacca 155
|||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 99 catgggtaagacccgtggtatgggagctgggcgcaagctcaagacccacagaaggaacca 158
Query: 156 gaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaaccttt 215
|||||||||||||||||| |||||||||||||| | ||||| |||||||| ||||| ||
Sbjct: 159 gaggtgggctgacaaagcctacaagaagagccatcttggcaacgagtggaagaaaccctt 218
Query: 216 tgctggatcatctcacgccaagggcatcgttctggagaagattggtattgaggccaagca 275
|||||| ||||||||||| ||||| ||||| || |||||||| || |||||||| |||||
Sbjct: 219 tgctggttcatctcacgcaaagggaatcgtccttgagaagatcggcattgaggctaagca 278
Query: 276 gccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaagaatggaaagaagat 335
||| || || || |||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 279 gcctaactctgctatccgtaagtgtgctcgtgtccagctggtgaagaatgggaagaagat 338
Query: 336 tgctgcctttgtgccgaatgatggttgcctaaactacatcgaggagaatgatgaggtgtt 395
|||||||||||| | || ||||||||| | |||||||| ||||||||||| |||||| |
Sbjct: 339 tgctgcctttgtagcaaacgatggttgcttgaactacattgaggagaatgacgaggtgct 398
Query: 396 gattgc 401
||||||
Sbjct: 399 gattgc 404
>gb|BG465822.1|BG465822 RHIZ2_45_A05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 557
Score = 311 bits (157), Expect = 5e-083
Identities = 283/325 (87%)
Strand = Plus / Plus
Query: 200 agtggaaaaaaccttttgctggatcatctcacgccaagggcatcgttctggagaagattg 259
||||||| ||||| |||||||| ||||||||||| ||||| ||||| || || ||||| |
Sbjct: 1 agtggaagaaaccctttgctggttcatctcacgcaaagggaatcgtccttgaaaagatcg 60
Query: 260 gtattgaggccaagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtga 319
| |||||||| |||||||| || || || |||||||||||||| ||||| ||||||||||
Sbjct: 61 gcattgaggctaagcagcctaactctgctatccgtaagtgtgctcgtgtccagctggtga 120
Query: 320 agaatggaaagaagattgctgcctttgtgccgaatgatggttgcctaaactacatcgagg 379
||||||| ||||||||||||||||||||||| || ||||||||| | |||||||| ||||
Sbjct: 121 agaatgggaagaagattgctgcctttgtgccaaacgatggttgcttgaactacattgagg 180
Query: 380 agaatgatgaggtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattc 439
||||||| |||||| ||||||| || || ||||||||||| || ||||||||||| ||||
Sbjct: 181 agaatgacgaggtgctgattgcggggttcggtcgtaagggccacgctgtgggagatattc 240
Query: 440 ctggtgtcaggttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaagg 499
|||||||| | |||||||| || ||||| |||||||| || ||||| || ||||||||||
Sbjct: 241 ctggtgtccgtttcaaggtcgtgaaggtctctggtgtttccctgctcgccctcttcaagg 300
Query: 500 agaagaaggagaagccaaggtctta 524
|||||||||||||||| || |||||
Sbjct: 301 agaagaaggagaagccgagatctta 325
>gb|CF483829.1|CF483829 POL1_1_A08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_1_A08_A002 3', mRNA sequence
Length = 519
Score = 311 bits (157), Expect = 5e-083
Identities = 283/325 (87%)
Strand = Plus / Plus
Query: 200 agtggaaaaaaccttttgctggatcatctcacgccaagggcatcgttctggagaagattg 259
||||||| ||||| |||||||| ||||||||||| ||||| ||||| || |||||||| |
Sbjct: 1 agtggaagaaaccctttgctggttcatctcacgcaaagggaatcgtccttgagaagatcg 60
Query: 260 gtattgaggccaagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtga 319
| |||||||| |||||||| || || || |||||||||||||| ||||| ||||||||||
Sbjct: 61 gcattgaggctaagcagcctaactctgctatccgtaagtgtgctcgtgtccagctggtga 120
Query: 320 agaatggaaagaagattgctgcctttgtgccgaatgatggttgcctaaactacatcgagg 379
||||||| ||||||||||||||||||||||| || ||||||||| | |||||||| ||||
Sbjct: 121 agaatgggaagaagattgctgcctttgtgccaaacgatggttgcttgaactacattgagg 180
Query: 380 agaatgatgaggtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattc 439
||||||| |||||| ||||||| || || ||||||||||| || ||||||||||| ||||
Sbjct: 181 agaatgacgaggtgctgattgcggggttcggtcgtaagggccacgctgtgggagatattc 240
Query: 440 ctggtgtcaggttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaagg 499
|||||||| | |||||||| || ||||| ||||| || || ||||| || ||||||||||
Sbjct: 241 ctggtgtccgtttcaaggtcgtgaaggtctctggcgtttccctgctcgccctcttcaagg 300
Query: 500 agaagaaggagaagccaaggtctta 524
|||||||||||||||| || |||||
Sbjct: 301 agaagaaggagaagccgagatctta 325
>gb|CW496914.1|CW496914 fsbb001f289g10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f289g10, DNA
sequence
Length = 708
Score = 299 bits (151), Expect = 2e-079
Identities = 232/255 (90%), Gaps = 3/255 (1%)
Strand = Plus / Plus
Query: 385 gatgaggtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggt 444
|||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 443 gatgaggttttgattgctggatttggtcgtaagggccatgctgtgggagatattcctggt 502
Query: 445 gtcaggttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaag 504
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 503 gtcaggttcaaggttgtgaaggtatctggtgtgtcgctgcttgctctcttcaaggagaag 562
Query: 505 aaggagaagccaaggtcttagatcactttcggtagtcaagaatggtgtaaactgcccaag 564
||||||||||||||||||||||| |||||| ||||||||||||| |||||||| || ||
Sbjct: 563 aaggagaagccaaggtcttagattgctttcgatagtcaagaatggagtaaactgtcc-ag 621
Query: 565 gctctattgtcaaagtt-aaagttctgctagcaactcagctgttaaatctgagctgtacc 623
|||||||| ||||| || ||| || |||||||||| || |||||| |||||||||||
Sbjct: 622 gctctattatcaaacttaaaacttgtgctagcaacagagatgttaattctgagctgta-t 680
Query: 624 tttttgttaacattg 638
|||||||||||||||
Sbjct: 681 tttttgttaacattg 695
Score = 272 bits (137), Expect = 4e-071
Identities = 146/149 (97%)
Strand = Plus / Plus
Query: 109 cgtggtatgggagctgggcgcaagctcaagacccaccgcaggaaccagaggtgggctgac 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgtggtatgggagctgggcgcaagctcaagacccaccgcaggaaccagaggtgggctgac 60
Query: 169 aaagcatacaagaagagccacttgggcaatgagtggaaaaaaccttttgctggatcatct 228
||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 61 aaagcatacaagaagagccacttgggcaatgagtggaaaaagccctttgctgggtcatct 120
Query: 229 cacgccaagggcatcgttctggagaagat 257
|||||||||||||||||||||||||||||
Sbjct: 121 cacgccaagggcatcgttctggagaagat 149
Score = 198 bits (100), Expect = 5e-049
Identities = 121/128 (94%)
Strand = Plus / Plus
Query: 258 tggtattgaggccaagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggt 317
||||||||||||||||||||| || || ||||||||||||||||| ||||||||||||||
Sbjct: 235 tggtattgaggccaagcagccgaactctgccatccgtaagtgtgctcgtgttcagctggt 294
Query: 318 gaagaatggaaagaagattgctgcctttgtgccgaatgatggttgcctaaactacatcga 377
||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 295 gaagaatgggaagaagatcgctgcctttgtgccgaatgatggttgcctgaactacatcga 354
Query: 378 ggagaatg 385
||||||||
Sbjct: 355 ggagaatg 362
>gb|CF074392.1|CF074392 FE1_24_C12.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_24_C12_A002 3', mRNA sequence
Length = 510
Score = 278 bits (140), Expect = 7e-073
Identities = 257/296 (86%)
Strand = Plus / Plus
Query: 229 cacgccaagggcatcgttctggagaagattggtattgaggccaagcagccaaattcggcc 288
||||| ||||| ||||| || |||||||| || |||||||| |||||||| || || ||
Sbjct: 1 cacgcaaagggaatcgtccttgagaagatcggcattgaggctaagcagcctaactctgct 60
Query: 289 atccgtaagtgtgcccgtgttcagctggtgaagaatggaaagaagattgctgcctttgtg 348
|||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 61 atccgtaagtgtgctcgtgtccagctggtgaagaatgggaagaagattgctgcctttgtg 120
Query: 349 ccgaatgatggttgcctaaactacatcgaggagaatgatgaggtgttgattgctggattt 408
|| || ||||||||| | |||||||| ||||||||||| |||||| ||||||| || ||
Sbjct: 121 ccaaacgatggttgcttgaactacattgaggagaatgacgaggtgctgattgcggggttc 180
Query: 409 ggtcgtaagggtcatgctgtgggagacattcctggtgtcaggttcaaggttgttaaggtg 468
||||||||||| || ||||||||||| |||||||||||| | |||||||| || |||||
Sbjct: 181 ggtcgtaagggccacgctgtgggagatattcctggtgtccgtttcaaggtcgtgaaggtc 240
Query: 469 tctggtgtgtcgctgcttgcactcttcaaggagaagaaggagaagccaaggtctta 524
||||| || || ||||| || |||||||||||||||||||||||||| || |||||
Sbjct: 241 tctggcgtttccctgctcgccctcttcaaggagaagaaggagaagccgagatctta 296
>gb|CF757184.1|CF757184 DSAF1_14_G07.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_14_G07_A011 3', mRNA sequence
Length = 558
Score = 244 bits (123), Expect = 9e-063
Identities = 204/231 (88%)
Strand = Plus / Plus
Query: 294 taagtgtgcccgtgttcagctggtgaagaatggaaagaagattgctgcctttgtgccgaa 353
||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 1 taagtgtgctcgtgtccagctggtgaagaatgggaagaagattgctgcctttgtgccaaa 60
Query: 354 tgatggttgcctaaactacatcgaggagaatgatgaggtgttgattgctggatttggtcg 413
||||||||| | |||||||||||||||||||| |||||| ||||||| || || |||||
Sbjct: 61 cgatggttgcttgaactacatcgaggagaatgacgaggtgctgattgcggggttcggtcg 120
Query: 414 taagggtcatgctgtgggagacattcctggtgtcaggttcaaggttgttaaggtgtctgg 473
|||||| || ||||||||||| |||||||||||| | |||||||| || ||||| |||||
Sbjct: 121 taagggccacgctgtgggagatattcctggtgtccgtttcaaggtcgtgaaggtctctgg 180
Query: 474 tgtgtcgctgcttgcactcttcaaggagaagaaggagaagccaaggtctta 524
|| || ||||| || |||||||||||||||||||||||||| || |||||
Sbjct: 181 cgtttccctgctcgccctcttcaaggagaagaaggagaagccgagatctta 231
>gb|CW092061.1|CW092061 104_454_10998922_114_33037_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998922, DNA
sequence
Length = 689
Score = 198 bits (100), Expect = 5e-049
Identities = 130/140 (92%)
Strand = Plus / Plus
Query: 388 gaggtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtc 447
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 24 gaggtgttgattgctggatttggtcgtaagggtcacgctgtgggagatattcctggtgtc 83
Query: 448 aggttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaag 507
||||||||||||| ||||| || |||||||| |||||||| || ||||||||||||||
Sbjct: 84 cggttcaaggttgtcaaggtctcgggtgtgtctctgcttgcccttttcaaggagaagaaa 143
Query: 508 gagaagccaaggtcttagat 527
||||||||||||||||||||
Sbjct: 144 gagaagccaaggtcttagat 163
>gb|CW119399.1|CW119399 104_496_11108746_148_34633_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11108746, DNA
sequence
Length = 483
Score = 198 bits (100), Expect = 5e-049
Identities = 130/140 (92%)
Strand = Plus / Plus
Query: 388 gaggtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcctggtgtc 447
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 101 gaggtgttgattgctggatttggtcgtaagggtcacgctgtgggagatattcctggtgtc 160
Query: 448 aggttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaaggagaagaag 507
||||||||||||| ||||| || |||||||| |||||||| || ||||||||||||||
Sbjct: 161 cggttcaaggttgtcaaggtctcgggtgtgtctctgcttgcccttttcaaggagaagaaa 220
Query: 508 gagaagccaaggtcttagat 527
||||||||||||||||||||
Sbjct: 221 gagaagccaaggtcttagat 240
>gb|CD208158.1|CD208158 HS1_31_B10.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_31_B10_A012 5', mRNA sequence
Length = 336
Score = 190 bits (96), Expect = 1e-046
Identities = 153/172 (88%)
Strand = Plus / Plus
Query: 96 catggggaagacacgtggtatgggagctgggcgcaagctcaagacccaccgcaggaacca 155
|||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 165 catgggtaagacccgtggtatgggagctgggcgcaagctcaagacccacagaaggaacca 224
Query: 156 gaggtgggctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaaccttt 215
|||||||||||||||||| |||||||||||||| | ||||| |||||||| ||||| ||
Sbjct: 225 gaggtgggctgacaaagcctacaagaagagccatcttggcaacgagtggaagaaaccctt 284
Query: 216 tgctggatcatctcacgccaagggcatcgttctggagaagattggtattgag 267
|||||| ||||||||||| ||||| ||||| || || ||||| || ||||||
Sbjct: 285 tgctggttcatctcacgcaaagggaatcgtccttgaaaagatcggcattgag 336
>gb|CW421338.1|CW421338 fsbb001f130b20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f130b20, DNA
sequence
Length = 755
Score = 188 bits (95), Expect = 5e-046
Identities = 140/155 (90%)
Strand = Plus / Minus
Query: 103 aagacacgtggtatgggagctgggcgcaagctcaagacccaccgcaggaaccagaggtgg 162
||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 346 aagacccgtggtatgggagctgggcgcaagctcaagacccacagaaggaaccagaggtgg 287
Query: 163 gctgacaaagcatacaagaagagccacttgggcaatgagtggaaaaaaccttttgctgga 222
||||||||||| |||||||||||||| | ||||| |||||||| ||||| ||||||||
Sbjct: 286 gctgacaaagcctacaagaagagccatcttggcaacgagtggaagaaaccctttgctggt 227
Query: 223 tcatctcacgccaagggcatcgttctggagaagat 257
||||||||||| ||||| ||||| || ||||||||
Sbjct: 226 tcatctcacgcaaagggaatcgtccttgagaagat 192
Score = 123 bits (62), Expect = 2e-026
Identities = 92/102 (90%)
Strand = Plus / Minus
Query: 262 attgaggccaagcagccaaattcggccatccgtaagtgtgcccgtgttcagctggtgaag 321
|||||||| |||||||| || || || |||||||||||||| ||||| ||||||||||||
Sbjct: 104 attgaggctaagcagcctaactctgctatccgtaagtgtgctcgtgtccagctggtgaag 45
Query: 322 aatggaaagaagattgctgcctttgtgccgaatgatggttgc 363
||||| ||||||||||||||||||||||| || |||||||||
Sbjct: 44 aatgggaagaagattgctgcctttgtgccaaacgatggttgc 3
>gb|AI724694.1|AI724694 RHIZ1_11_G11.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 199
Score = 163 bits (82), Expect = 3e-038
Identities = 151/170 (88%), Gaps = 3/170 (1%)
Strand = Plus / Plus
Query: 470 ctggtgtgtcgctgcttgcactcttcaaggagaagaaggagaagccaaggtcttagatca 529
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ctggtgtgtctctgcttgcgctcttcaaggagaagaaggagaagccaaggtcttagattg 67
Query: 530 ctttcggtagtcaag-aatggtgtaaactgcccaaggctctattgtcaaagttaaagttc 588
|||||| |||||||| ||||| |||||||| |||||||| ||| ||||| ||||||||
Sbjct: 68 ctttcgatagtcaagaaatggagtaaactg-tcaaggctccattatcaaacttaaagttg 126
Query: 589 tgctagcaactcagctgttaaatctgagctgtacctttttgttaacattg 638
|||||||||| || |||||| ||||||||||| |||||||||||||||
Sbjct: 127 tgctagcaacagagatgttaattctgagctgta-ttttttgttaacattg 175
>gb|AW564277.1|AW564277 LG1_289_E03.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 592
Score = 127 bits (64), Expect = 1e-027
Identities = 124/144 (86%)
Strand = Plus / Plus
Query: 381 gaatgatgaggtgttgattgctggatttggtcgtaagggtcatgctgtgggagacattcc 440
|||||| |||||| ||||||| || || ||||||||||| || ||||||||||| |||||
Sbjct: 9 gaatgacgaggtgctgattgcggggttcggtcgtaagggccacgctgtgggagatattcc 68
Query: 441 tggtgtcaggttcaaggttgttaaggtgtctggtgtgtcgctgcttgcactcttcaagga 500
||||||| | |||||||| || ||||| ||||| || || ||||| || |||||||||||
Sbjct: 69 tggtgtccgtttcaaggtcgtgaaggtctctggcgtttccctgctcgccctcttcaagga 128
Query: 501 gaagaaggagaagccaaggtctta 524
||||||||||||||| || |||||
Sbjct: 129 gaagaaggagaagccgagatctta 152
>gb|CW385819.1|CW385819 fsbb001f069h03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f069h03, DNA
sequence
Length = 324
Score = 54.0 bits (27), Expect = 2e-005
Identities = 84/102 (82%), Gaps = 7/102 (6%)
Strand = Plus / Plus
Query: 582 aaagttctgctagcaactcagctgttaaatctgagctgtacctttttgttaacattgtta 641
|||||| |||||||||| || |||||| ||||||||||| ||||||||||||||| ||
Sbjct: 24 aaagttgtgctagcaacagagatgttaattctgagctgtat-tttttgttaacattgcta 82
Query: 642 cagtattacagagttctgtttccattttgaagatattaatat 683
| |||||| |||||||||||||||||||||||||
Sbjct: 83 tcg------agagtttcgtttccattttgaagatattaatat 118
>gb|BZ330420.1|BZ330420 hv92b01.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hv92b01 5', DNA sequence
Length = 275
Score = 44.1 bits (22), Expect = 0.017
Identities = 47/55 (85%), Gaps = 4/55 (7%)
Strand = Plus / Plus
Query: 52 ccgcagcgtcgccgaccttcacagccggt----tccttcctccgccaccatgggg 102
||||| ||||||||||| ||||||||||| |||| |||||||| ||||||||
Sbjct: 147 ccgcaacgtcgccgaccctcacagccggtggtctcctacctccgccgccatgggg 201
>gb|CW279502.1|CW279502 104_754_11407111_148_35437_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407111, DNA
sequence
Length = 677
Score = 44.1 bits (22), Expect = 0.017
Identities = 47/55 (85%), Gaps = 4/55 (7%)
Strand = Plus / Plus
Query: 52 ccgcagcgtcgccgaccttcacagccggt----tccttcctccgccaccatgggg 102
||||| ||||||||||| ||||||||||| |||| |||||||| ||||||||
Sbjct: 289 ccgcaacgtcgccgaccctcacagccggtggtctcctacctccgccgccatgggg 343
>gb|CW425952.1|CW425952 fsbb001f137c03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f137c03, DNA
sequence
Length = 478
Score = 40.1 bits (20), Expect = 0.27
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 656 tctgtttccattttgaagatatta 679
||||||| ||||||||||||||||
Sbjct: 364 tctgtttgcattttgaagatatta 387
>gb|CW425953.1|CW425953 fsbb001f137c03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f137c03, DNA
sequence
Length = 479
Score = 40.1 bits (20), Expect = 0.27
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 656 tctgtttccattttgaagatatta 679
||||||| ||||||||||||||||
Sbjct: 112 tctgtttgcattttgaagatatta 89
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 229,054
Number of Sequences: 832831
Number of extensions: 229054
Number of successful extensions: 68530
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68455
Number of HSP's gapped (non-prelim): 49
length of query: 708
length of database: 491,359,669
effective HSP length: 20
effective length of query: 688
effective length of database: 474,703,049
effective search space: 326595697712
effective search space used: 326595697712
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)