BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441599.2.1
(755 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE361061.1|BE361061 DG1_69_D10.b1_A002 Dark Grown 1 (DG1... 763 0.0
gb|BM318762.1|BM318762 PI1_16_D08.g1_A002 Pathogen induced ... 763 0.0
gb|CD228441.1|CD228441 CCC1_7_B04.g1_A007 Callus culture/ce... 763 0.0
gb|CN141956.1|CN141956 WOUND1_2_H12.g1_A002 Wounded leaves ... 763 0.0
gb|CD228336.1|CD228336 CCC1_7_B04.b1_A007 Callus culture/ce... 757 0.0
gb|AW680617.1|AW680617 WS1_6_D06.b1_A002 Water-stressed 1 (... 726 0.0
gb|BE592522.1|BE592522 WS1_94_B03.b1_A002 Water-stressed 1 ... 724 0.0
gb|BG933125.1|BG933125 WS1_29_E05.b1_A002 Water-stressed 1 ... 700 0.0
gb|AW679594.1|AW679594 WS1_2_G10.g1_A002 Water-stressed 1 (... 694 0.0
gb|BG932955.1|BG932955 DG1_69_D10.g1_A002 Dark Grown 1 (DG1... 680 0.0
gb|BM318682.1|BM318682 PI1_16_D08.b9_A002 Pathogen induced ... 680 0.0
gb|DN551790.1|DN551790 pSPR-RT-A-H1_A07_S096 pSPR Sorghum p... 670 0.0
gb|CX607877.1|CX607877 ANR1_31_G05.b1_A002 Anaerobic roots ... 666 0.0
gb|BE356645.1|BE356645 DG1_126_C07.g1_A002 Dark Grown 1 (DG... 609 e-172
gb|BG101864.1|BG101864 RHIZ2_23_D03.g1_A003 Rhizome2 (RHIZ2... 607 e-172
gb|AW676849.1|AW676849 DG1_1_C12.b1_A002 Dark Grown 1 (DG1)... 595 e-168
gb|AW679515.1|AW679515 WS1_29_E05.g1_A002 Water-stressed 1 ... 577 e-163
gb|BG102410.1|BG102410 RHIZ2_23_D03.b1_A003 Rhizome2 (RHIZ2... 571 e-161
gb|BE592386.1|BE592386 WS1_94_B03.g1_A002 Water-stressed 1 ... 515 e-144
gb|BG933469.1|BG933469 WS1_2_G10.b1_A002 Water-stressed 1 (... 515 e-144
gb|BE352910.1|BE352910 DG1_1_C12.g1_A002 Dark Grown 1 (DG1)... 509 e-142
gb|CX607963.1|CX607963 ANR1_31_G05.g1_A002 Anaerobic roots ... 490 e-136
gb|AW680672.1|AW680672 WS1_6_D06.g1_A002 Water-stressed 1 (... 484 e-135
gb|AW745695.1|AW745695 WS1_36_F12.g1_A002 Water-stressed 1 ... 377 e-102
gb|AW677617.1|AW677617 DG1_8_B08.g1_A002 Dark Grown 1 (DG1)... 323 1e-086
gb|CW041576.1|CW041576 104_275_10506625_115_30285 Sorghum m... 319 2e-085
gb|CW095825.1|CW095825 104_461_11001550_116_34335_093 Sorgh... 319 2e-085
gb|CW155301.1|CW155301 104_557_11146066_116_36362_035 Sorgh... 319 2e-085
gb|CW489645.1|CW489645 fsbb001f274l01k0 Sorghum methylation... 319 2e-085
gb|CW140181.1|CW140181 104_530_11135646_148_34919_021 Sorgh... 72 8e-011
gb|CW344349.1|CW344349 104_847_11487906_116_36200_079 Sorgh... 72 8e-011
gb|CW426108.1|CW426108 fsbb001f137f11k0 Sorghum methylation... 72 8e-011
gb|CW494597.1|CW494597 fsbb001f285p18f0 Sorghum methylation... 72 8e-011
gb|CW494598.1|CW494598 fsbb001f285p18k0 Sorghum methylation... 72 8e-011
gb|CN148237.1|CN148237 WOUND1_55_B10.b1_A002 Wounded leaves... 72 8e-011
gb|CN148310.1|CN148310 WOUND1_55_B10.g1_A002 Wounded leaves... 72 8e-011
gb|CW095826.1|CW095826 104_461_11001550_148_34331_093 Sorgh... 68 1e-009
gb|CW140180.1|CW140180 104_530_11135646_116_34915_021 Sorgh... 50 3e-004
gb|CW155302.1|CW155302 104_557_11146066_148_36361_035 Sorgh... 50 3e-004
gb|CW426107.1|CW426107 fsbb001f137f11f0 Sorghum methylation... 48 0.001
>gb|BE361061.1|BE361061 DG1_69_D10.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 649
Score = 763 bits (385), Expect = 0.0
Identities = 521/563 (92%), Gaps = 5/563 (0%)
Strand = Plus / Minus
Query: 112 aagtctagcaatttcttgtaatacagtgaagcagccaacaaagaagatacaaaagagacc 171
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 591 aagtctagcaatttcttgtaatacagtgaagcagccaacaaaggagatacaaaggagaca 532
Query: 172 agagtagcggcaacattaagtattcatcgtttcaacatgaaacccttaaacaattccttc 231
|||||||||||||||||||||||| ||| |||||||||||||||||||| |||| | |||
Sbjct: 531 agagtagcggcaacattaagtattaatcatttcaacatgaaacccttaaccaatccattc 472
Query: 232 atcacaagagtat-cggctgtctttagccatagttcaggcggaacatgtcattctgcacg 290
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 471 atcacaagagttttcggctgtcttcagccatagttcaggcggaacatgtcattctgcacg 412
Query: 291 aagaaggacccagcggccggcagcaaatggaatgcctgggagaacttgatggggtgctcc 350
||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 411 aagaatgacccagctgccggcagcaaatggaatgcctgggagaacttgagggggtgatcc 352
Query: 351 tcggggccggtgcgtatggaaccggagacgaagacgagcatgcctccctggggacccgat 410
|||||||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||
Sbjct: 351 tcggggccggtgcggatggagccggagacgaagacgagcacgcctccctggggtcccgac 292
Query: 411 ggctggcagtcgacggtgacgatctgatgctcgcaggcctggaaagggagagatccgagc 470
|||||||||||||||||| |||||| |||| |||||||||||| |||||||||||||||
Sbjct: 291 ggctggcagtcgacggtgtcgatcttgtgctggcaggcctggaaggggagagatccgagc 232
Query: 471 ttgccggcaatggcggacgggccctggaacttctggccctcgaaggtgagcatggaggtc 530
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 231 ttgccggcaatggcggcggggccctggaacttatggccctcgaaggtgagcatggaggtc 172
Query: 531 tcctggtacagcccaaccagcgccgcgcggttggtgtcgaacgttcggtagtaatgctcc 590
|||||||||||||| |||||||||| |||||||||||||||||| ||||||| || |||
Sbjct: 171 tcctggtacagccccaccagcgccgggcggttggtgtcgaacgtctggtagtagtgatcc 112
Query: 591 acgaaggccttcgctaccgcgtcagggtccatcgccatcacctcgccgccgccg---gtc 647
|||||||||||||| |||||||| ||||||||||||| |||||||||||||||| |||
Sbjct: 111 acgaaggccttcgccaccgcgtccgggtccatcgccaacacctcgccgccgccgccggtc 52
Query: 648 aagcacgctcctagggtttcgag 670
|||||||||||||||||||||
Sbjct: 51 c-gcacgctcctagggtttcgag 30
Score = 42.1 bits (21), Expect = 0.073
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 81 agtacatgattcaaaacaactgaaataatccaa 113
|||||||| ||||||||||||| |||| |||||
Sbjct: 636 agtacatggttcaaaacaactgcaatagtccaa 604
>gb|BM318762.1|BM318762 PI1_16_D08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 636
Score = 763 bits (385), Expect = 0.0
Identities = 521/563 (92%), Gaps = 5/563 (0%)
Strand = Plus / Minus
Query: 112 aagtctagcaatttcttgtaatacagtgaagcagccaacaaagaagatacaaaagagacc 171
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 562 aagtctagcaatttcttgtaatacagtgaagcagccaacaaaggagatacaaaggagaca 503
Query: 172 agagtagcggcaacattaagtattcatcgtttcaacatgaaacccttaaacaattccttc 231
|||||||||||||||||||||||| ||| |||||||||||||||||||| |||| | |||
Sbjct: 502 agagtagcggcaacattaagtattaatcatttcaacatgaaacccttaaccaatccattc 443
Query: 232 atcacaagagtat-cggctgtctttagccatagttcaggcggaacatgtcattctgcacg 290
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 442 atcacaagagttttcggctgtcttcagccatagttcaggcggaacatgtcattctgcacg 383
Query: 291 aagaaggacccagcggccggcagcaaatggaatgcctgggagaacttgatggggtgctcc 350
||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 382 aagaatgacccagctgccggcagcaaatggaatgcctgggagaacttgagggggtgatcc 323
Query: 351 tcggggccggtgcgtatggaaccggagacgaagacgagcatgcctccctggggacccgat 410
|||||||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||
Sbjct: 322 tcggggccggtgcggatggagccggagacgaagacgagcacgcctccctggggtcccgac 263
Query: 411 ggctggcagtcgacggtgacgatctgatgctcgcaggcctggaaagggagagatccgagc 470
|||||||||||||||||| |||||| |||| |||||||||||| |||||||||||||||
Sbjct: 262 ggctggcagtcgacggtgtcgatcttgtgctggcaggcctggaaggggagagatccgagc 203
Query: 471 ttgccggcaatggcggacgggccctggaacttctggccctcgaaggtgagcatggaggtc 530
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 202 ttgccggcaatggcggcggggccctggaacttatggccctcgaaggtgagcatggaggtc 143
Query: 531 tcctggtacagcccaaccagcgccgcgcggttggtgtcgaacgttcggtagtaatgctcc 590
|||||||||||||| |||||||||| |||||||||||||||||| ||||||| || |||
Sbjct: 142 tcctggtacagccccaccagcgccgggcggttggtgtcgaacgtctggtagtagtgatcc 83
Query: 591 acgaaggccttcgctaccgcgtcagggtccatcgccatcacctcgccgccgccg---gtc 647
|||||||||||||| |||||||| ||||||||||||| |||||||||||||||| |||
Sbjct: 82 acgaaggccttcgccaccgcgtccgggtccatcgccaacacctcgccgccgccgccggtc 23
Query: 648 aagcacgctcctagggtttcgag 670
|||||||||||||||||||||
Sbjct: 22 c-gcacgctcctagggtttcgag 1
Score = 42.1 bits (21), Expect = 0.073
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 81 agtacatgattcaaaacaactgaaataatccaa 113
|||||||| ||||||||||||| |||| |||||
Sbjct: 607 agtacatggttcaaaacaactgcaatagtccaa 575
>gb|CD228441.1|CD228441 CCC1_7_B04.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_7_B04_A007 5', mRNA sequence
Length = 626
Score = 763 bits (385), Expect = 0.0
Identities = 521/563 (92%), Gaps = 5/563 (0%)
Strand = Plus / Minus
Query: 112 aagtctagcaatttcttgtaatacagtgaagcagccaacaaagaagatacaaaagagacc 171
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 602 aagtctagcaatttcttgtaatacagtgaagcagccaacaaaggagatacaaaggagaca 543
Query: 172 agagtagcggcaacattaagtattcatcgtttcaacatgaaacccttaaacaattccttc 231
|||||||||||||||||||||||| ||| |||||||||||||||||||| |||| | |||
Sbjct: 542 agagtagcggcaacattaagtattaatcatttcaacatgaaacccttaaccaatccattc 483
Query: 232 atcacaagagtat-cggctgtctttagccatagttcaggcggaacatgtcattctgcacg 290
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 482 atcacaagagttttcggctgtcttcagccatagttcaggcggaacatgtcattctgcacg 423
Query: 291 aagaaggacccagcggccggcagcaaatggaatgcctgggagaacttgatggggtgctcc 350
||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 422 aagaatgacccagctgccggcagcaaatggaatgcctgggagaacttgagggggtgatcc 363
Query: 351 tcggggccggtgcgtatggaaccggagacgaagacgagcatgcctccctggggacccgat 410
|||||||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||
Sbjct: 362 tcggggccggtgcggatggagccggagacgaagacgagcacgcctccctggggtcccgac 303
Query: 411 ggctggcagtcgacggtgacgatctgatgctcgcaggcctggaaagggagagatccgagc 470
|||||||||||||||||| |||||| |||| |||||||||||| |||||||||||||||
Sbjct: 302 ggctggcagtcgacggtgtcgatcttgtgctggcaggcctggaaggggagagatccgagc 243
Query: 471 ttgccggcaatggcggacgggccctggaacttctggccctcgaaggtgagcatggaggtc 530
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 242 ttgccggcaatggcggcggggccctggaacttatggccctcgaaggtgagcatggaggtc 183
Query: 531 tcctggtacagcccaaccagcgccgcgcggttggtgtcgaacgttcggtagtaatgctcc 590
|||||||||||||| |||||||||| |||||||||||||||||| ||||||| || |||
Sbjct: 182 tcctggtacagccccaccagcgccgggcggttggtgtcgaacgtctggtagtagtgatcc 123
Query: 591 acgaaggccttcgctaccgcgtcagggtccatcgccatcacctcgccgccgccg---gtc 647
|||||||||||||| |||||||| ||||||||||||| |||||||||||||||| |||
Sbjct: 122 acgaaggccttcgccaccgcgtccgggtccatcgccaacacctcgccgccgccgccggtc 63
Query: 648 aagcacgctcctagggtttcgag 670
|||||||||||||||||||||
Sbjct: 62 c-gcacgctcctagggtttcgag 41
>gb|CN141956.1|CN141956 WOUND1_2_H12.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_2_H12_A002 5', mRNA sequence
Length = 713
Score = 763 bits (385), Expect = 0.0
Identities = 548/599 (91%), Gaps = 5/599 (0%)
Strand = Plus / Minus
Query: 112 aagtctagcaatttcttgtaatacagtgaagcagccaacaaagaagatacaaaagagacc 171
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 610 aagtctagcaatttcttgtaatacagtgaagcagccaacaaaggagatacaaaggagaca 551
Query: 172 agagtagcggcaacattaagtattcatcgtttcaacatgaaacccttaaacaattccttc 231
|||||||||||||||||||||||| ||| |||||||||||||||||||| |||| | |||
Sbjct: 550 agagtagcggcaacattaagtattaatcatttcaacatgaaacccttaaccaatccattc 491
Query: 232 atcacaagagtat-cggctgtctttagccatagttcaggcggaacatgtcattctgcacg 290
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 490 atcacaagagttttcggctgtcttcagccatagttcaggcggaacatgtcattctgcacg 431
Query: 291 aagaaggacccagcggccggcagcaaatggaatgcctgggagaacttgatggggtgctcc 350
||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 430 aagaatgacccagctgccggcagcaaatggaatgcctgggagaacttgagggggtgatcc 371
Query: 351 tcggggccggtgcgtatggaaccggagacgaagacgagcatgcctccctggggacccgat 410
|||||||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||
Sbjct: 370 tcggggccggtgcggatggagccggagacgaagacgagcacgcctccctggggtcccgac 311
Query: 411 ggctggcagtcgacggtgacgatctgatgctcgcaggcctggaaagggagagatccgagc 470
|||||||||||||||||| |||||| |||| |||||||||||| |||||||||||||||
Sbjct: 310 ggctggcagtcgacggtgtcgatcttgtgctggcaggcctggaaggggagagatccgagc 251
Query: 471 ttgccggcaatggcggacgggccctggaacttctggccctcgaaggtgagcatggaggtc 530
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 250 ttgccggcaatggcggcggggccctggaacttatggccctcgaaggtgagcatggaggtc 191
Query: 531 tcctggtacagcccaaccagcgccgcgcggttggtgtcgaacgttcggtagtaatgctcc 590
|||||||||||||| |||||||||| |||||||||||||||||| ||||||| || |||
Sbjct: 190 tcctggtacagccccaccagcgccgggcggttggtgtcgaacgtctggtagtagtgatcc 131
Query: 591 acgaaggccttcgctaccgcgtcagggtccatcgccatcacctcgccgccgccg---gtc 647
|||||||||||||| |||||||| ||||||||||||| |||||||||||||||| |||
Sbjct: 130 acgaaggccttcgccaccgcgtccgggtccatcgccaacacctcgccgccgccgccggtc 71
Query: 648 aagcacgctcctagggtttcgaggagctcggcgaaagagagagagcgtcgcggtatgag 706
||||||||||||||||||||| |||||| | ||||| |||||||||||||||
Sbjct: 70 c-gcacgctcctagggtttcgagttgctcggagggcgagaggaggcgtcgcggtatgag 13
Score = 56.0 bits (28), Expect = 5e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 41 gaccgtttcaattcacattccacaaagaaatggtgc 76
|||||||||| |||||||| ||||||||||||||||
Sbjct: 703 gaccgtttcagttcacattgcacaaagaaatggtgc 668
>gb|CD228336.1|CD228336 CCC1_7_B04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_7_B04_A007 3', mRNA sequence
Length = 564
Score = 757 bits (382), Expect = 0.0
Identities = 497/534 (93%), Gaps = 1/534 (0%)
Strand = Plus / Minus
Query: 112 aagtctagcaatttcttgtaatacagtgaagcagccaacaaagaagatacaaaagagacc 171
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 537 aagtctagcaatttcttgtaatacagtgaagcagccaacaaaggagatacaaaggagaca 478
Query: 172 agagtagcggcaacattaagtattcatcgtttcaacatgaaacccttaaacaattccttc 231
|||||||||||||||||||||||| ||| |||||||||||||||||||| |||| | |||
Sbjct: 477 agagtagcggcaacattaagtattaatcatttcaacatgaaacccttaaccaatccattc 418
Query: 232 atcacaagagtat-cggctgtctttagccatagttcaggcggaacatgtcattctgcacg 290
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 417 atcacaagagttttcggctgtcttcagccatagttcaggcggaacatgtcattctgcacg 358
Query: 291 aagaaggacccagcggccggcagcaaatggaatgcctgggagaacttgatggggtgctcc 350
||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 357 aagaatgacccagctgccggcagcaaatggaatgcctgggagaacttgagggggtgatcc 298
Query: 351 tcggggccggtgcgtatggaaccggagacgaagacgagcatgcctccctggggacccgat 410
|||||||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||
Sbjct: 297 tcggggccggtgcggatggagccggagacgaagacgagcacgcctccctggggtcccgac 238
Query: 411 ggctggcagtcgacggtgacgatctgatgctcgcaggcctggaaagggagagatccgagc 470
|||||||||||||||||| |||||| |||| |||||||||||| |||||||||||||||
Sbjct: 237 ggctggcagtcgacggtgtcgatcttgtgctggcaggcctggaaggggagagatccgagc 178
Query: 471 ttgccggcaatggcggacgggccctggaacttctggccctcgaaggtgagcatggaggtc 530
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 177 ttgccggcaatggcggcggggccctggaacttatggccctcgaaggtgagcatggaggtc 118
Query: 531 tcctggtacagcccaaccagcgccgcgcggttggtgtcgaacgttcggtagtaatgctcc 590
|||||||||||||| |||||||||| |||||||||||||||||| ||||||| || |||
Sbjct: 117 tcctggtacagccccaccagcgccgggcggttggtgtcgaacgtctggtagtagtgatcc 58
Query: 591 acgaaggccttcgctaccgcgtcagggtccatcgccatcacctcgccgccgccg 644
|||||||||||||| |||||||| ||||||||||||| ||||||||||||||||
Sbjct: 57 acgaaggccttcgccaccgcgtccgggtccatcgccaacacctcgccgccgccg 4
>gb|AW680617.1|AW680617 WS1_6_D06.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 570
Score = 726 bits (366), Expect = 0.0
Identities = 504/547 (92%), Gaps = 5/547 (0%)
Strand = Plus / Minus
Query: 128 tgtaatacagtgaagcagccaacaaagaagatacaaaagagaccagagtagcggcaacat 187
||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||
Sbjct: 570 tgtaatacagtgaagcagccaacaaaggagatacaaagnagacaagagtagcggcaacat 511
Query: 188 taagtattcatcgtttcaacatgaaacccttaaacaattccttcatcacaagagtat-cg 246
|||||||| ||| |||||||||||||||||||| |||| | |||||||||||||| | ||
Sbjct: 510 taagtattaatcatttcaacatgaaacccttaaccaatccattcatcacaagagttttcg 451
Query: 247 gctgtctttagccatagttcaggcggaacatgtcattctgcacgaagaaggacccagcgg 306
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 450 gctgtcttcagccatagttcaggcggaacatgtcattctgcacgaagaatgacccagctg 391
Query: 307 ccggcagcaaatggaatgcctgggagaacttgatggggtgctcctcggggccggtgcgta 366
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
Sbjct: 390 ccggcagcaaatggaatgcctgggagaacttgagggggtgatcctcggggccggtgcgga 331
Query: 367 tggaaccggagacgaagacgagcatgcctccctggggacccgatggctggcagtcgacgg 426
|||| ||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||
Sbjct: 330 tggagccggagacgaagacgagcacgcctccctggggtcccgacggctggcagtcgacgg 271
Query: 427 tgacgatctgatgctcgcaggcctggaaagggagagatccgagcttgccggcaatggcgg 486
|| |||||| |||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 270 tgtcgatcttgtgctggcaggcctggaaggggagagatccgagcttgccggcaatggcgg 211
Query: 487 acgggccctggaacttctggccctcgaaggtgagcatggaggtctcctggtacagcccaa 546
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 210 cggggccctggaacttatggccctcgaaggtgagcatggaggtctcctggtacagcccca 151
Query: 547 ccagcgccgcgcggttggtgtcgaacgttcggtagtaatgctccacgaaggccttcgcta 606
||||||||| |||||||||||||||||| ||||||| || ||||||||||||||||| |
Sbjct: 150 ccagcgccgggcggttggtgtcgaacgtctggtagtagtgatccacgaaggccttcgcca 91
Query: 607 ccgcgtcagggtccatcgccatcacctcgccgccgccg---gtcaagcacgctcctaggg 663
||||||| ||||||||||||| |||||||||||||||| ||| ||||||||||||||
Sbjct: 90 ccgcgtccgggtccatcgccaacacctcgccgccgccgccggtcc-gcacgctcctaggg 32
Query: 664 tttcgag 670
|||||||
Sbjct: 31 tttcgag 25
>gb|BE592522.1|BE592522 WS1_94_B03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 583
Score = 724 bits (365), Expect = 0.0
Identities = 510/555 (91%), Gaps = 5/555 (0%)
Strand = Plus / Minus
Query: 120 caatttcttgtaatacagtgaagcagccaacaaagaagatacaaaagagaccagagtagc 179
||||||||||||||||||||||||||||| ||||| |||| |||| ||| | ||||||||
Sbjct: 583 caatttcttgtaatacagtgaagcagccaccaaaggagatccaaaggagccaagagtagc 524
Query: 180 ggcaacattaagtattcatcgtttcaacatgaaacccttaaacaattccttcatcacaag 239
|||||||||||||||| ||| |||||||||||||||||||| |||| | |||||||||||
Sbjct: 523 ggcaacattaagtattaatcatttcaacatgaaacccttaaccaatccattcatcacaag 464
Query: 240 agtat-cggctgtctttagccatagttcaggcggaacatgtcattctgcacgaagaagga 298
||| | |||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 463 agttttcggctgtcttcagccatagttcaggcggaacatgtcattctgcacgaagaatga 404
Query: 299 cccagcggccggcagcaaatggaatgcctgggagaacttgatggggtgctcctcggggcc 358
|||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 403 cccagctgccggcagcaaatggaatgcctgggagaacttgagggggtgatcctcggggcc 344
Query: 359 ggtgcgtatggaaccggagacgaagacgagcatgcctccctggggacccgatggctggca 418
|||||| ||||| ||||||||||||||||||| |||||||||||| ||||| ||||||||
Sbjct: 343 ggtgcggatggagccggagacgaagacgagcacgcctccctggggtcccgacggctggca 284
Query: 419 gtcgacggtgacgatctgatgctcgcaggcctggaaagggagagatccgagcttgccggc 478
|||||||||| |||||| |||| |||||||||||| |||||||||||||||||||||||
Sbjct: 283 gtcgacggtgtcgatcttgtgctggcaggcctggaaggggagagatccgagcttgccggc 224
Query: 479 aatggcggacgggccctggaacttctggccctcgaaggtgagcatggaggtctcctggta 538
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 223 aatggcggcggggccctggaacttatggccctcgaaggtgagcatggaggtctcctggta 164
Query: 539 cagcccaaccagcgccgcgcggttggtgtcgaacgttcggtagtaatgctccacgaaggc 598
|||||| |||||||||| |||||||||||||||||| ||||||| || |||||||||||
Sbjct: 163 cagccccaccagcgccgggcggttggtgtcgaacgtctggtagtagtgatccacgaaggc 104
Query: 599 cttcgctaccgcgtcagggtccatcgccatcacctcgccgccgccg---gtcaagcacgc 655
|||||| |||||||| ||||||||||||| |||||||||||||||| ||| ||||||
Sbjct: 103 cttcgccaccgcgtccgggtccatcgccaacacctcgccgccgccgccggtcc-gcacgc 45
Query: 656 tcctagggtttcgag 670
|||||||||||||||
Sbjct: 44 tcctagggtttcgag 30
>gb|BG933125.1|BG933125 WS1_29_E05.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 566
Score = 700 bits (353), Expect = 0.0
Identities = 489/531 (92%), Gaps = 5/531 (0%)
Strand = Plus / Minus
Query: 144 agccaacaaagaagatacaaaagagaccagagtagcggcaacattaagtattcatcgttt 203
||||||||||| ||||||||| ||||| |||||||||||||||||||||||| ||| |||
Sbjct: 566 agccaacaaaggagatacaaaggagacaagagtagcggcaacattaagtattaatcattt 507
Query: 204 caacatgaaacccttaaacaattccttcatcacaagagtat-cggctgtctttagccata 262
||||||||||||||||| |||| | |||||||||||||| | |||||||||| |||||||
Sbjct: 506 caacatgaaacccttaaccaatccattcatcacaagagttttcggctgtcttcagccata 447
Query: 263 gttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggcagcaaatggaa 322
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 446 gttcaggcggaacatgtcattctgcacgaagaatgacccagctgccggcagcaaatggaa 387
Query: 323 tgcctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggagacgaa 382
||||||||||||||||| |||||| ||||||||||||||||| ||||| |||||||||||
Sbjct: 386 tgcctgggagaacttgagggggtgatcctcggggccggtgcggatggagccggagacgaa 327
Query: 383 gacgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctgatgctc 442
|||||||| |||||||||||| ||||| |||||||||||||||||| |||||| ||||
Sbjct: 326 gacgagcacgcctccctggggtcccgacggctggcagtcgacggtgtcgatcttgtgctg 267
Query: 443 gcaggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctggaactt 502
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 266 gcaggcctggaaggggagagatccgagcttgccggcaatggcggcggggccctggaactt 207
Query: 503 ctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcgcggtt 562
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 206 atggccctcgaaggtgagcatggaggtctcctggtacagccccaccagcgccgggcggtt 147
Query: 563 ggtgtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcagggtccat 622
|||||||||||| ||||||| || ||||||||||||||||| |||||||| ||||||||
Sbjct: 146 ggtgtcgaacgtctggtagtagtgatccacgaaggccttcgccaccgcgtccgggtccat 87
Query: 623 cgccatcacctcgccgccgccg---gtcaagcacgctcctagggtttcgag 670
||||| |||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 86 cgccaacacctcgccgccgccgccggtcc-gcacgctcctagggtttcgag 37
>gb|AW679594.1|AW679594 WS1_2_G10.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 564
Score = 694 bits (350), Expect = 0.0
Identities = 456/490 (93%), Gaps = 1/490 (0%)
Strand = Plus / Minus
Query: 112 aagtctagcaatttcttgtaatacagtgaagcagccaacaaagaagatacaaaagagacc 171
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 490 aagtctagcaatttcttgtaatacagtgaagcagccaacaaaggagatacaaaggagaca 431
Query: 172 agagtagcggcaacattaagtattcatcgtttcaacatgaaacccttaaacaattccttc 231
|||||||||||||||||||||||| ||| |||||||||||||||||||| |||| | |||
Sbjct: 430 agagtagcggcaacattaagtattaatcatttcaacatgaaacccttaaccaatccattc 371
Query: 232 atcacaagagtat-cggctgtctttagccatagttcaggcggaacatgtcattctgcacg 290
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 370 atcacaagagttttcggctgtcttcagccatagttcaggcggaacatgtcattctgcacg 311
Query: 291 aagaaggacccagcggccggcagcaaatggaatgcctgggagaacttgatggggtgctcc 350
||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 310 aagaatgacccagctgccggcagcaaatggaatgcctgggagaacttgagggggtgatcc 251
Query: 351 tcggggccggtgcgtatggaaccggagacgaagacgagcatgcctccctggggacccgat 410
|||||||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||
Sbjct: 250 tcggggccggtgcggatggagccggagacgaagacgagcacgcctccctggggtcccgac 191
Query: 411 ggctggcagtcgacggtgacgatctgatgctcgcaggcctggaaagggagagatccgagc 470
|||||||||||||||||| |||||| |||| |||||||||||| |||||||||||||||
Sbjct: 190 ggctggcagtcgacggtgtcgatcttgtgctggcaggcctggaaggggagagatccgagc 131
Query: 471 ttgccggcaatggcggacgggccctggaacttctggccctcgaaggtgagcatggaggtc 530
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 130 ttgccggcaatggcggcggggccctggaacttatggccctcgaaggtgagcatggaggtc 71
Query: 531 tcctggtacagcccaaccagcgccgcgcggttggtgtcgaacgttcggtagtaatgctcc 590
|||||||||||||| |||||||||| |||||||||||||||||| ||||||| || |||
Sbjct: 70 tcctggtacagccccaccagcgccgggcggttggtgtcgaacgtctggtagtagtgatcc 11
Query: 591 acgaaggcct 600
||||||||||
Sbjct: 10 acgaaggcct 1
Score = 42.1 bits (21), Expect = 0.073
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 81 agtacatgattcaaaacaactgaaataatccaa 113
|||||||| ||||||||||||| |||| |||||
Sbjct: 535 agtacatggttcaaaacaactgcaatagtccaa 503
>gb|BG932955.1|BG932955 DG1_69_D10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 619
Score = 680 bits (343), Expect = 0.0
Identities = 449/483 (92%), Gaps = 1/483 (0%)
Strand = Plus / Minus
Query: 112 aagtctagcaatttcttgtaatacagtgaagcagccaacaaagaagatacaaaagagacc 171
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 483 aagtctagcaatttcttgtaatacagtgaagcagccaacaaaggagatacaaaggagaca 424
Query: 172 agagtagcggcaacattaagtattcatcgtttcaacatgaaacccttaaacaattccttc 231
|||||||||||||||||||||||| ||| |||||||||||||||||||| |||| | |||
Sbjct: 423 agagtagcggcaacattaagtattaatcatttcaacatgaaacccttaaccaatccattc 364
Query: 232 atcacaagagtat-cggctgtctttagccatagttcaggcggaacatgtcattctgcacg 290
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 363 atcacaagagttttcggctgtcttcagccatagttcaggcggaacatgtcattctgcacg 304
Query: 291 aagaaggacccagcggccggcagcaaatggaatgcctgggagaacttgatggggtgctcc 350
||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 303 aagaatgacccagctgccggcagcaaatggaatgcctgggagaacttgagggggtgatcc 244
Query: 351 tcggggccggtgcgtatggaaccggagacgaagacgagcatgcctccctggggacccgat 410
|||||||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||
Sbjct: 243 tcggggccggtgcggatggagccggagacgaagacgagcacgcctccctggggtcccgac 184
Query: 411 ggctggcagtcgacggtgacgatctgatgctcgcaggcctggaaagggagagatccgagc 470
|||||||||||||||||| |||||| |||| |||||||||||| |||||||||||||||
Sbjct: 183 ggctggcagtcgacggtgtcgatcttgtgctggcaggcctggaaggggagagatccgagc 124
Query: 471 ttgccggcaatggcggacgggccctggaacttctggccctcgaaggtgagcatggaggtc 530
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 123 ttgccggcaatggcggcggggccctggaacttatggccctcgaaggtgagcatggaggtc 64
Query: 531 tcctggtacagcccaaccagcgccgcgcggttggtgtcgaacgttcggtagtaatgctcc 590
|||||||||||||| |||||||||| |||||||||||||||||| ||||||| || |||
Sbjct: 63 tcctggtacagccccaccagcgccgggcggttggtgtcgaacgtctggtagtagtgatcc 4
Query: 591 acg 593
|||
Sbjct: 3 acg 1
Score = 56.0 bits (28), Expect = 5e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 41 gaccgtttcaattcacattccacaaagaaatggtgc 76
|||||||||| |||||||| ||||||||||||||||
Sbjct: 576 gaccgtttcagttcacattgcacaaagaaatggtgc 541
>gb|BM318682.1|BM318682 PI1_16_D08.b9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 551
Score = 680 bits (343), Expect = 0.0
Identities = 476/517 (92%), Gaps = 5/517 (0%)
Strand = Plus / Minus
Query: 158 atacaaaagagaccagagtagcggcaacattaagtattcatcgtttcaacatgaaaccct 217
||||||| ||||| |||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 551 atacaaaggagacaagagtagcggcaacattaagtattaatcatttcaacatgaaaccct 492
Query: 218 taaacaattccttcatcacaagagtat-cggctgtctttagccatagttcaggcggaaca 276
||| |||| | |||||||||||||| | |||||||||| |||||||||||||||||||||
Sbjct: 491 taaccaatccattcatcacaagagttttcggctgtcttcagccatagttcaggcggaaca 432
Query: 277 tgtcattctgcacgaagaaggacccagcggccggcagcaaatggaatgcctgggagaact 336
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 431 tgtcattctgcacgaagaatgacccagctgccggcagcaaatggaatgcctgggagaact 372
Query: 337 tgatggggtgctcctcggggccggtgcgtatggaaccggagacgaagacgagcatgcctc 396
||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||| |||||
Sbjct: 371 tgagggggtgatcctcggggccggtgcggatggagccggagacgaagacgagcacgcctc 312
Query: 397 cctggggacccgatggctggcagtcgacggtgacgatctgatgctcgcaggcctggaaag 456
||||||| ||||| |||||||||||||||||| |||||| |||| |||||||||||| |
Sbjct: 311 cctggggtcccgacggctggcagtcgacggtgtcgatcttgtgctggcaggcctggaagg 252
Query: 457 ggagagatccgagcttgccggcaatggcggacgggccctggaacttctggccctcgaagg 516
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 251 ggagagatccgagcttgccggcaatggcggcggggccctggaacttatggccctcgaagg 192
Query: 517 tgagcatggaggtctcctggtacagcccaaccagcgccgcgcggttggtgtcgaacgttc 576
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 191 tgagcatggaggtctcctggtacagccccaccagcgccgggcggttggtgtcgaacgtct 132
Query: 577 ggtagtaatgctccacgaaggccttcgctaccgcgtcagggtccatcgccatcacctcgc 636
||||||| || ||||||||||||||||| |||||||| ||||||||||||| ||||||||
Sbjct: 131 ggtagtagtgatccacgaaggccttcgccaccgcgtccgggtccatcgccaacacctcgc 72
Query: 637 cgccgccg---gtcaagcacgctcctagggtttcgag 670
|||||||| ||| |||||||||||||||||||||
Sbjct: 71 cgccgccgccggtcc-gcacgctcctagggtttcgag 36
>gb|DN551790.1|DN551790 pSPR-RT-A-H1_A07_S096 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 781
Score = 670 bits (338), Expect = 0.0
Identities = 450/486 (92%), Gaps = 1/486 (0%)
Strand = Plus / Plus
Query: 160 acaaaagagaccagagtagcggcaacattaagtattcatcgtttcaacatgaaaccctta 219
||||| ||||| |||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 213 acaaaggagacaagagtagcggcaacattaagtattaatcatttcaacatgaaaccctta 272
Query: 220 aacaattccttcatcacaagagtat-cggctgtctttagccatagttcaggcggaacatg 278
| |||||| |||||||||||| | | |||||||||| |||||||||||||||||||||||
Sbjct: 273 accaattcattcatcacaagaattttcggctgtcttcagccatagttcaggcggaacatg 332
Query: 279 tcattctgcacgaagaaggacccagcggccggcagcaaatggaatgcctgggagaacttg 338
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 333 tcattctgcacgaagaatgacccagctgccggcagcaaatggaatgcctgggagaacttg 392
Query: 339 atggggtgctcctcggggccggtgcgtatggaaccggagacgaagacgagcatgcctccc 398
| |||||| ||||||||||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 393 agggggtgatcctcggggccggtgcggatggagccggagacgaagacgagcacgcctccc 452
Query: 399 tggggacccgatggctggcagtcgacggtgacgatctgatgctcgcaggcctggaaaggg 458
||||| ||||| |||||||||||||||||| |||||| |||| |||||||||||| |||
Sbjct: 453 tggggccccgacggctggcagtcgacggtgtcgatcttgtgctggcaggcctggaagggg 512
Query: 459 agagatccgagcttgccggcaatggcggacgggccctggaacttctggccctcgaaggtg 518
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 513 agagatccgagcttgccggcaatggcggcggggccctggaacttatggccctcgaaggtg 572
Query: 519 agcatggaggtctcctggtacagcccaaccagcgccgcgcggttggtgtcgaacgttcgg 578
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||
Sbjct: 573 agcatggaggtctcctggtacagccccaccagcgccgggcggttggtgtcgaacgtctgg 632
Query: 579 tagtaatgctccacgaaggccttcgctaccgcgtcagggtccatcgccatcacctcgccg 638
||||| || ||||||||||||||||| |||||||| ||||||||||||| ||||||||||
Sbjct: 633 tagtagtgatccacgaaggccttcgccaccgcgtccgggtccatcgccaacacctcgccg 692
Query: 639 ccgccg 644
||||||
Sbjct: 693 ccgccg 698
Score = 85.7 bits (43), Expect = 5e-015
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 112 aagtctagcaatttcttgtaatacagtgaagcagccaacaaag 154
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 aagtctagcaatttcttgtaatacagtgaagcagccaacaaag 218
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 41 gaccgtttcaattcacattccacaaagaaatggtgc 76
|||||||||| |||||||| |||||||||||||||
Sbjct: 83 gaccgtttcagttcacattgaacaaagaaatggtgc 118
Score = 42.1 bits (21), Expect = 0.073
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 81 agtacatgattcaaaacaactgaaataatccaa 113
|||||||| ||||||||||||| |||| |||||
Sbjct: 131 agtacatggttcaaaacaactgcaatagtccaa 163
>gb|CX607877.1|CX607877 ANR1_31_G05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_31_G05_A002 3', mRNA sequence
Length = 642
Score = 666 bits (336), Expect = 0.0
Identities = 433/464 (93%), Gaps = 1/464 (0%)
Strand = Plus / Minus
Query: 112 aagtctagcaatttcttgtaatacagtgaagcagccaacaaagaagatacaaaagagacc 171
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 469 aagtctagcaatttcttgtaatacagtgaagcagccaacaaaggagatacaaaggagaca 410
Query: 172 agagtagcggcaacattaagtattcatcgtttcaacatgaaacccttaaacaattccttc 231
|||||||||||||||||||||||| ||| |||||||||||||||||||| |||| | |||
Sbjct: 409 agagtagcggcaacattaagtattaatcatttcaacatgaaacccttaaccaatccattc 350
Query: 232 atcacaagagtat-cggctgtctttagccatagttcaggcggaacatgtcattctgcacg 290
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 349 atcacaagagttttcggctgtcttcagccatagttcaggcggaacatgtcattctgcacg 290
Query: 291 aagaaggacccagcggccggcagcaaatggaatgcctgggagaacttgatggggtgctcc 350
||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 289 aagaatgacccagctgccggcagcaaatggaatgcctgggagaacttgagggggtgatcc 230
Query: 351 tcggggccggtgcgtatggaaccggagacgaagacgagcatgcctccctggggacccgat 410
|||||||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||
Sbjct: 229 tcggggccggtgcggatggagccggagacgaagacgagcacgcctccctggggtcccgac 170
Query: 411 ggctggcagtcgacggtgacgatctgatgctcgcaggcctggaaagggagagatccgagc 470
|||||||||||||||||| |||||| |||| |||||||||||| |||||||||||||||
Sbjct: 169 ggctggcagtcgacggtgtcgatcttgtgctggcaggcctggaaggggagagatccgagc 110
Query: 471 ttgccggcaatggcggacgggccctggaacttctggccctcgaaggtgagcatggaggtc 530
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 109 ttgccggcaatggcggcggggccctggaacttatggccctcgaaggtgagcatggaggtc 50
Query: 531 tcctggtacagcccaaccagcgccgcgcggttggtgtcgaacgt 574
|||||||||||||| |||||||||| |||||||||||| |||||
Sbjct: 49 tcctggtacagccccaccagcgccgggcggttggtgtcaaacgt 6
Score = 56.0 bits (28), Expect = 5e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 41 gaccgtttcaattcacattccacaaagaaatggtgc 76
|||||||||| |||||||| ||||||||||||||||
Sbjct: 562 gaccgtttcagttcacattgcacaaagaaatggtgc 527
>gb|BE356645.1|BE356645 DG1_126_C07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 452
Score = 609 bits (307), Expect = e-172
Identities = 410/443 (92%), Gaps = 1/443 (0%)
Strand = Plus / Minus
Query: 203 tcaacatgaaacccttaaacaattccttcatcacaagagtat-cggctgtctttagccat 261
|||||||||||||||||| |||| | |||||||||||||| | |||||||||| ||||||
Sbjct: 452 tcaacatgaaacccttaaccaatccattcatcacaagagttttcggctgtcttcagccat 393
Query: 262 agttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggcagcaaatgga 321
|||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||
Sbjct: 392 agttcaggcggaacatgtcattctgcacgaagaatgacccatctgccggcagcaaatgga 333
Query: 322 atgcctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccggagacga 381
|||||||||||||||||| |||||| ||||||||||||||||| ||||| ||||||||||
Sbjct: 332 atgcctgggagaacttgagggggtgatcctcggggccggtgcggatggagccggagacga 273
Query: 382 agacgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatctgatgct 441
||||||||| |||||||||||| ||||| |||||||||||||||||| |||||| ||||
Sbjct: 272 agacgagcacgcctccctggggtcccgacggctggcagtcgacggtgtcgatcttgtgct 213
Query: 442 cgcaggcctggaaagggagagatccgagcttgccggcaatggcggacgggccctggaact 501
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 212 ggcaggcctggaaggggagagatccgagcttgccggcaatggcggcggggccctggaact 153
Query: 502 tctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcgcggt 561
| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 152 tatggccctcgaaggtgagcatggaggtctcctggtacagccccaccagcgccgggcggt 93
Query: 562 tggtgtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcagggtcca 621
||||||||||||| ||||||| || ||||||||||||||||| |||||||| |||||||
Sbjct: 92 tggtgtcgaacgtctggtagtagtgatccacgaaggccttcgccaccgcgtccgggtcca 33
Query: 622 tcgccatcacctcgccgccgccg 644
|||||| ||||||||||||||||
Sbjct: 32 tcgccaacacctcgccgccgccg 10
>gb|BG101864.1|BG101864 RHIZ2_23_D03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 507
Score = 607 bits (306), Expect = e-172
Identities = 409/442 (92%), Gaps = 1/442 (0%)
Strand = Plus / Minus
Query: 160 acaaaagagaccagagtagcggcaacattaagtattcatcgtttcaacatgaaaccctta 219
||||| ||||| |||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 442 acaaaggagacaagagtagcggcaacattaagtattaatcatttcaacatgaaaccctta 383
Query: 220 aacaattccttcatcacaagagtat-cggctgtctttagccatagttcaggcggaacatg 278
| |||||| |||||||||||| | | |||||||||| |||||||||||||||||||||||
Sbjct: 382 accaattcattcatcacaagaattttcggctgtcttcagccatagttcaggcggaacatg 323
Query: 279 tcattctgcacgaagaaggacccagcggccggcagcaaatggaatgcctgggagaacttg 338
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 322 tcattctgcacgaagaatgacccagctgccggcagcaaatggaatgcctgggagaacttg 263
Query: 339 atggggtgctcctcggggccggtgcgtatggaaccggagacgaagacgagcatgcctccc 398
| |||||| ||||||||||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 262 agggggtgatcctcggggccggtgcggatggagccggagacgaagacgagcacgcctccc 203
Query: 399 tggggacccgatggctggcagtcgacggtgacgatctgatgctcgcaggcctggaaaggg 458
||||| ||||| |||||||||||||||||| |||||| |||| |||||||||||| |||
Sbjct: 202 tggggccccgacggctggcagtcgacggtgtcgatcttgtgctggcaggcctggaagggg 143
Query: 459 agagatccgagcttgccggcaatggcggacgggccctggaacttctggccctcgaaggtg 518
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 142 agagatccgagcttgccggcaatggcggcggggccctggaacttatggccctcgaaggtg 83
Query: 519 agcatggaggtctcctggtacagcccaaccagcgccgcgcggttggtgtcgaacgttcgg 578
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||
Sbjct: 82 agcatggaggtctcctggtacagccccaccagcgccgggcggttggtgtcgaacgtctgg 23
Query: 579 tagtaatgctccacgaaggcct 600
||||| || |||||||||||||
Sbjct: 22 tagtagtgatccacgaaggcct 1
Score = 85.7 bits (43), Expect = 5e-015
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 112 aagtctagcaatttcttgtaatacagtgaagcagccaacaaag 154
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aagtctagcaatttcttgtaatacagtgaagcagccaacaaag 437
>gb|AW676849.1|AW676849 DG1_1_C12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 480
Score = 595 bits (300), Expect = e-168
Identities = 412/446 (92%), Gaps = 5/446 (1%)
Strand = Plus / Minus
Query: 229 ttcatcacaagagtat-cggctgtctttagccatagttcaggcggaacatgtcattctgc 287
|||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 476 ttcatcacaagagttttcggctgtcttcagccatagttcaggcggaacatgtcattctgc 417
Query: 288 acgaagaaggacccagcggccggcagcaaatggaatgcctgggagaacttgatggggtgc 347
|||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 416 acgaagaatgacccagctgccggcagcaaatggaatgcctgggagaacttgagggggtga 357
Query: 348 tcctcggggccggtgcgtatggaaccggagacgaagacgagcatgcctccctggggaccc 407
||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||| |||
Sbjct: 356 tcctcggggccggtgcggatggagccggagacgaagacgagcacgcctccctggggtccc 297
Query: 408 gatggctggcagtcgacggtgacgatctgatgctcgcaggcctggaaagggagagatccg 467
|| |||||||||||||||||| |||||| |||| |||||||||||| ||||||||||||
Sbjct: 296 gacggctggcagtcgacggtgtcgatcttgtgctggcaggcctggaaggggagagatccg 237
Query: 468 agcttgccggcaatggcggacgggccctggaacttctggccctcgaaggtgagcatggag 527
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 236 agcttgccggcaatggcggcggggccctggaacttatggccctcgaaggtgagcatggag 177
Query: 528 gtctcctggtacagcccaaccagcgccgcgcggttggtgtcgaacgttcggtagtaatgc 587
||||||||||||||||| |||||||||| |||||||||||||||||| ||||||| ||
Sbjct: 176 gtctcctggtacagccccaccagcgccgggcggttggtgtcgaacgtctggtagtagtga 117
Query: 588 tccacgaaggccttcgctaccgcgtcagggtccatcgccatcacctcgccgccgccg--- 644
||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||
Sbjct: 116 tccacgaaggccttcgccaccgcgtccgggtccatcgccaacacctcgccgccgccgccg 57
Query: 645 gtcaagcacgctcctagggtttcgag 670
||| |||||||||||||||||||||
Sbjct: 56 gtcc-gcacgctcctagggtttcgag 32
>gb|AW679515.1|AW679515 WS1_29_E05.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 481
Score = 577 bits (291), Expect = e-163
Identities = 379/407 (93%), Gaps = 1/407 (0%)
Strand = Plus / Minus
Query: 112 aagtctagcaatttcttgtaatacagtgaagcagccaacaaagaagatacaaaagagacc 171
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 407 aagtctagcaatttcttgtaatacagtgaagcagccaacaaaggagatacaaaggagaca 348
Query: 172 agagtagcggcaacattaagtattcatcgtttcaacatgaaacccttaaacaattccttc 231
|||||||||||||||||||||||| ||| |||||||||||||||||||| |||| | |||
Sbjct: 347 agagtagcggcaacattaagtattaatcatttcaacatgaaacccttaaccaatccattc 288
Query: 232 atcacaagagtat-cggctgtctttagccatagttcaggcggaacatgtcattctgcacg 290
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 287 atcacaagagttttcggctgtcttcagccatagttcaggcggaacatgtcattctgcacg 228
Query: 291 aagaaggacccagcggccggcagcaaatggaatgcctgggagaacttgatggggtgctcc 350
||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 227 aagaatgacccagctgccggcagcaaatggaatgcctgggagaacttgagggggtgatcc 168
Query: 351 tcggggccggtgcgtatggaaccggagacgaagacgagcatgcctccctggggacccgat 410
|||||||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||
Sbjct: 167 tcggggccggtgcggatggagccggagacgaagacgagcacgcctccctggggtcccgac 108
Query: 411 ggctggcagtcgacggtgacgatctgatgctcgcaggcctggaaagggagagatccgagc 470
|||||||||||||||||| |||||| |||| |||||||||||| |||||||||||||||
Sbjct: 107 ggctggcagtcgacggtgtcgatcttgtgctggcaggcctggaaggggagagatccgagc 48
Query: 471 ttgccggcaatggcggacgggccctggaacttctggccctcgaaggt 517
|||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 47 ttgccggcaatggcggcggggccctggaacttatggccctcgaaggt 1
Score = 42.1 bits (21), Expect = 0.073
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 81 agtacatgattcaaaacaactgaaataatccaa 113
|||||||| ||||||||||||| |||| |||||
Sbjct: 452 agtacatggttcaaaacaactgcaatagtccaa 420
>gb|BG102410.1|BG102410 RHIZ2_23_D03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 445
Score = 571 bits (288), Expect = e-161
Identities = 387/418 (92%), Gaps = 4/418 (0%)
Strand = Plus / Minus
Query: 256 agccatagttcaggcggaacatgtcattctgcacgaagaaggacccagcggccggcagca 315
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 445 agccatagttcaggcggaacatgtcattctgcacgaagaatgacccagctgccggcagca 386
Query: 316 aatggaatgcctgggagaacttgatggggtgctcctcggggccggtgcgtatggaaccgg 375
|||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| ||||
Sbjct: 385 aatggaatgcctgggagaacttgagggggtgatcctcggggccggtgcggatggagccgg 326
Query: 376 agacgaagacgagcatgcctccctggggacccgatggctggcagtcgacggtgacgatct 435
||||||||||||||| |||||||||||| ||||| |||||||||||||||||| ||||||
Sbjct: 325 agacgaagacgagcacgcctccctggggccccgacggctggcagtcgacggtgtcgatct 266
Query: 436 gatgctcgcaggcctggaaagggagagatccgagcttgccggcaatggcggacgggccct 495
|||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 265 tgtgctggcaggcctggaaggggagagatccgagcttgccggcaatggcggcggggccct 206
Query: 496 ggaacttctggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccg 555
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 ggaacttatggccctcgaaggtgagcatggaggtctcctggtacagccccaccagcgccg 146
Query: 556 cgcggttggtgtcgaacgttcggtagtaatgctccacgaaggccttcgctaccgcgtcag 615
|||||||||||||||||| ||||||| || ||||||||||||||||| |||||||| |
Sbjct: 145 ggcggttggtgtcgaacgtctggtagtagtgatccacgaaggccttcgccaccgcgtccg 86
Query: 616 ggtccatcgccatcacctcgccgccgccg---gtcaagcacgctcctagggtttcgag 670
|||||||||||| |||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 85 ggtccatcgccaacacctcgccgccgccgccggtcc-gcacgctcctagggtttcgag 29
>gb|BE592386.1|BE592386 WS1_94_B03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 440
Score = 515 bits (260), Expect = e-144
Identities = 339/364 (93%), Gaps = 1/364 (0%)
Strand = Plus / Minus
Query: 112 aagtctagcaatttcttgtaatacagtgaagcagccaacaaagaagatacaaaagagacc 171
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 364 aagtctagcaatttcttgtaatacagtgaagcagccaacaaaggagatacaaaggagaca 305
Query: 172 agagtagcggcaacattaagtattcatcgtttcaacatgaaacccttaaacaattccttc 231
|||||||||||||||||||||||| ||| |||||||||||||||||||| |||| | |||
Sbjct: 304 agagtagcggcaacattaagtattaatcatttcaacatgaaacccttaaccaatccattc 245
Query: 232 atcacaagagtat-cggctgtctttagccatagttcaggcggaacatgtcattctgcacg 290
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 244 atcacaagagttttcggctgtcttcagccatagttcaggcggaacatgtcattctgcacg 185
Query: 291 aagaaggacccagcggccggcagcaaatggaatgcctgggagaacttgatggggtgctcc 350
||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 184 aagaatgacccagctgccggcagcaaatggaatgcctgggagaacttgagggggtgatcc 125
Query: 351 tcggggccggtgcgtatggaaccggagacgaagacgagcatgcctccctggggacccgat 410
|||||||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||
Sbjct: 124 tcggggccggtgcggatggagccggagacgaagacgagcacgcctccctggggtcccgac 65
Query: 411 ggctggcagtcgacggtgacgatctgatgctcgcaggcctggaaagggagagatccgagc 470
|||||||||||||||||| |||||| |||| |||||||||||| |||||||||||||||
Sbjct: 64 ggctggcagtcgacggtgtcgatcttgtgctggcaggcctggaaggggagagatccgagc 5
Query: 471 ttgc 474
||||
Sbjct: 4 ttgc 1
>gb|BG933469.1|BG933469 WS1_2_G10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 418
Score = 515 bits (260), Expect = e-144
Identities = 359/390 (92%), Gaps = 4/390 (1%)
Strand = Plus / Minus
Query: 284 ctgcacgaagaaggacccagcggccggcagcaaatggaatgcctgggagaacttgatggg 343
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 418 ctgcacgaagaatgacccagctgccggcagcaaatggaatgcctgggagaacttgagggg 359
Query: 344 gtgctcctcggggccggtgcgtatggaaccggagacgaagacgagcatgcctccctgggg 403
||| ||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||
Sbjct: 358 gtgatcctcggggccggtgcggatggagccggagacgaagacgagcacgcctccctgggg 299
Query: 404 acccgatggctggcagtcgacggtgacgatctgatgctcgcaggcctggaaagggagaga 463
||||| |||||||||||||||||| |||||| |||| |||||||||||| ||||||||
Sbjct: 298 tcccgacggctggcagtcgacggtgtcgatcttgtgctggcaggcctggaaggggagaga 239
Query: 464 tccgagcttgccggcaatggcggacgggccctggaacttctggccctcgaaggtgagcat 523
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 238 tccgagcttgccggcaatggcggcggggccctggaacttatggccctcgaaggtgagcat 179
Query: 524 ggaggtctcctggtacagcccaaccagcgccgcgcggttggtgtcgaacgttcggtagta 583
||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||
Sbjct: 178 ggaggtctcctggtacagccccaccagcgccgggcggttggtgtcgaacgtctggtagta 119
Query: 584 atgctccacgaaggccttcgctaccgcgtcagggtccatcgccatcacctcgccgccgcc 643
|| ||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||
Sbjct: 118 gtgatccacgaaggccttcgccaccgcgtccgggtccatcgccaacacctcgccgccgcc 59
Query: 644 g---gtcaagcacgctcctagggtttcgag 670
| ||| |||||||||||||||||||||
Sbjct: 58 gccggtcc-gcacgctcctagggtttcgag 30
>gb|BE352910.1|BE352910 DG1_1_C12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 500
Score = 509 bits (257), Expect = e-142
Identities = 342/369 (92%), Gaps = 1/369 (0%)
Strand = Plus / Minus
Query: 112 aagtctagcaatttcttgtaatacagtgaagcagccaacaaagaagatacaaaagagacc 171
||||||||||||||||||||||||||||||||||||| | ||| ||||||||| |||||
Sbjct: 369 aagtctagcaatttcttgtaatacagtgaagcagccatctaaggagatacaaaggagaca 310
Query: 172 agagtagcggcaacattaagtattcatcgtttcaacatgaaacccttaaacaattccttc 231
|||||||||||||||||||||||| ||| |||||||||||||||||||| |||| | |||
Sbjct: 309 agagtagcggcaacattaagtattaatcatttcaacatgaaacccttaaccaatccattc 250
Query: 232 atcacaagagtat-cggctgtctttagccatagttcaggcggaacatgtcattctgcacg 290
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 249 atcacaagagttttcggctgtcttcagccatagttcaggcggaacatgtcattctgcacg 190
Query: 291 aagaaggacccagcggccggcagcaaatggaatgcctgggagaacttgatggggtgctcc 350
||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 189 aagaatgacccagctgccggcagcaaatggaatgcctgggagaacttgagggggtgatcc 130
Query: 351 tcggggccggtgcgtatggaaccggagacgaagacgagcatgcctccctggggacccgat 410
|||||||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||
Sbjct: 129 tcggggccggtgcggatggagccggagacgaagacgagcacgcctccctggggtcccgac 70
Query: 411 ggctggcagtcgacggtgacgatctgatgctcgcaggcctggaaagggagagatccgagc 470
|||||||||||||||||| |||||| |||| |||||||||||| |||||||||||||||
Sbjct: 69 ggctggcagtcgacggtgtcgatcttgtgctggcaggcctggaaggggagagatccgagc 10
Query: 471 ttgccggca 479
|||||||||
Sbjct: 9 ttgccggca 1
Score = 56.0 bits (28), Expect = 5e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 41 gaccgtttcaattcacattccacaaagaaatggtgc 76
|||||||||| |||||||| ||||||||||||||||
Sbjct: 462 gaccgtttcagttcacattgcacaaagaaatggtgc 427
>gb|CX607963.1|CX607963 ANR1_31_G05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_31_G05_A002 5', mRNA sequence
Length = 411
Score = 490 bits (247), Expect = e-136
Identities = 346/377 (91%), Gaps = 4/377 (1%)
Strand = Plus / Minus
Query: 297 gacccagcggccggcagcaaatggaatgcctgggagaacttgatggggtgctcctcgggg 356
|||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 407 gacccagctgccggcagcaaatggaatgcctgggagaacttgagggggtgatcctcgggg 348
Query: 357 ccggtgcgtatggaaccggagacgaagacgagcatgcctccctggggacccgatggctgg 416
|||||||| ||||| ||||||||||||||||||| |||||| ||||| ||||| ||||||
Sbjct: 347 ccggtgcggatggagccggagacgaagacgagcacgcctccatggggtcccgacggctgg 288
Query: 417 cagtcgacggtgacgatctgatgctcgcaggcctggaaagggagagatccgagcttgccg 476
|||||||||||| |||||| |||| |||||||||||| |||||||||||||||||||||
Sbjct: 287 cagtcgacggtgtcgatcttgtgctggcaggcctggaaggggagagatccgagcttgccg 228
Query: 477 gcaatggcggacgggccctggaacttctggccctcgaaggtgagcatggaggtctcctgg 536
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 227 gcaatggcggcggggccctggaacttatggccctcgaaggtgagcatggaggtctcctgg 168
Query: 537 tacagcccaaccagcgccgcgcggttggtgtcgaacgttcggtagtaatgctccacgaag 596
|||||||| |||||||||| |||||||||||||||||| ||||||| || |||||||||
Sbjct: 167 tacagccccaccagcgccgggcggttggtgtcgaacgtctggtagtagtgatccacgaag 108
Query: 597 gccttcgctaccgcgtcagggtccatcgccatcacctcgccgccgccg---gtcaagcac 653
|||||||| |||||||| ||||||||||||| |||||||||||||||| ||| ||||
Sbjct: 107 gccttcgccaccgcgtccgggtccatcgccaacacctcgccgccgccgccggtcc-gcac 49
Query: 654 gctcctagggtttcgag 670
|||||||||||||||||
Sbjct: 48 gctcctagggtttcgag 32
>gb|AW680672.1|AW680672 WS1_6_D06.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 478
Score = 484 bits (244), Expect = e-135
Identities = 320/344 (93%), Gaps = 1/344 (0%)
Strand = Plus / Minus
Query: 112 aagtctagcaatttcttgtaatacagtgaagcagccaacaaagaagatacaaaagagacc 171
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 344 aagtctagcaatttcttgtaatacagtgaagcagccaacaaaggagatacaaaggagaca 285
Query: 172 agagtagcggcaacattaagtattcatcgtttcaacatgaaacccttaaacaattccttc 231
|||||||||||||||||||||||| ||| |||||||||||||||||||| |||| | |||
Sbjct: 284 agagtagcggcaacattaagtattaatcatttcaacatgaaacccttaaccaatccattc 225
Query: 232 atcacaagagtat-cggctgtctttagccatagttcaggcggaacatgtcattctgcacg 290
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 224 atcacaagagttttcggctgtcttcagccatagttcaggcggaacatgtcattctgcacg 165
Query: 291 aagaaggacccagcggccggcagcaaatggaatgcctgggagaacttgatggggtgctcc 350
||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 164 aagaatgacccagctgccggcagcaaatggaatgcctgggagaacttgagggggtgatcc 105
Query: 351 tcggggccggtgcgtatggaaccggagacgaagacgagcatgcctccctggggacccgat 410
|||||||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||
Sbjct: 104 tcggggccggtgcggatggagccggagacgaagacgagcacgcctccctggggtcccgac 45
Query: 411 ggctggcagtcgacggtgacgatctgatgctcgcaggcctggaa 454
|||||||||||||||||| |||||| |||| ||||||||||||
Sbjct: 44 ggctggcagtcgacggtgtcgatcttgtgctggcaggcctggaa 1
Score = 56.0 bits (28), Expect = 5e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 41 gaccgtttcaattcacattccacaaagaaatggtgc 76
|||||||||| |||||||| ||||||||||||||||
Sbjct: 437 gaccgtttcagttcacattgcacaaagaaatggtgc 402
>gb|AW745695.1|AW745695 WS1_36_F12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 378
Score = 377 bits (190), Expect = e-102
Identities = 248/266 (93%), Gaps = 1/266 (0%)
Strand = Plus / Minus
Query: 112 aagtctagcaatttcttgtaatacagtgaagcagccaacaaagaagatacaaaagagacc 171
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 268 aagtctagcaatttcttgtaatacagtgaagcagccaacaaaggagatacaaaggagaca 209
Query: 172 agagtagcggcaacattaagtattcatcgtttcaacatgaaacccttaaacaattccttc 231
|||||||||||||||||||||||| ||| |||||||||||||||||||| |||| | |||
Sbjct: 208 agagtagcggcaacattaagtattaatcatttcaacatgaaacccttaaccaatccattc 149
Query: 232 atcacaagagtat-cggctgtctttagccatagttcaggcggaacatgtcattctgcacg 290
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 148 atcacaagagttttcggctgtcttcagccatagttcaggcggaacatgtcattctgcacg 89
Query: 291 aagaaggacccagcggccggcagcaaatggaatgcctgggagaacttgatggggtgctcc 350
||||| |||||||| |||||||||||||||||||||||||| ||||||| |||||| |||
Sbjct: 88 aagaatgacccagctgccggcagcaaatggaatgcctgggacaacttgagggggtgatcc 29
Query: 351 tcggggccggtgcgtatggaaccgga 376
|||||||||||||| ||||| |||||
Sbjct: 28 tcggggccggtgcggatggagccgga 3
Score = 56.0 bits (28), Expect = 5e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 41 gaccgtttcaattcacattccacaaagaaatggtgc 76
|||||||||| |||||||| ||||||||||||||||
Sbjct: 361 gaccgtttcagttcacattgcacaaagaaatggtgc 326
>gb|AW677617.1|AW677617 DG1_8_B08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 490
Score = 323 bits (163), Expect = 1e-086
Identities = 206/219 (94%), Gaps = 1/219 (0%)
Strand = Plus / Minus
Query: 112 aagtctagcaatttcttgtaatacagtgaagcagccaacaaagaagatacaaaagagacc 171
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 288 aagtctagcaatttcttgtaatacagtgaagcagccaacaaaggagatacaaaggagaca 229
Query: 172 agagtagcggcaacattaagtattcatcgtttcaacatgaaacccttaaacaattccttc 231
|||||||||||||||||||||||| ||| |||||||||||||||||||| |||| | |||
Sbjct: 228 agagtagcggcaacattaagtattaatcatttcaacatgaaacccttaaccaatccattc 169
Query: 232 atcacaagag-tatcggctgtctttagccatagttcaggcggaacatgtcattctgcacg 290
|||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 168 atcacaagagttttcggctgtcttcagccatagttcaggcggaacatgtcattctgcacg 109
Query: 291 aagaaggacccagcggccggcagcaaatggaatgcctgg 329
||||| |||||||| ||||||||||||||||||||||||
Sbjct: 108 aagaatgacccagctgccggcagcaaatggaatgcctgg 70
Score = 56.0 bits (28), Expect = 5e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 41 gaccgtttcaattcacattccacaaagaaatggtgc 76
|||||||||| |||||||| ||||||||||||||||
Sbjct: 381 gaccgtttcagttcacattgcacaaagaaatggtgc 346
>gb|CW041576.1|CW041576 104_275_10506625_115_30285 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506625, DNA
sequence
Length = 636
Score = 319 bits (161), Expect = 2e-085
Identities = 204/217 (94%), Gaps = 1/217 (0%)
Strand = Plus / Minus
Query: 112 aagtctagcaatttcttgtaatacagtgaagcagccaacaaagaagatacaaaagagacc 171
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 387 aagtctagcaatttcttgtaatacagtgaagcagccaacaaaggagatacaaaggagaca 328
Query: 172 agagtagcggcaacattaagtattcatcgtttcaacatgaaacccttaaacaattccttc 231
|||||||||||||||||||||||| ||| |||||||||||||||||||| |||| | |||
Sbjct: 327 agagtagcggcaacattaagtattaatcatttcaacatgaaacccttaaccaatccattc 268
Query: 232 atcacaagag-tatcggctgtctttagccatagttcaggcggaacatgtcattctgcacg 290
|||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 267 atcacaagagttttcggctgtcttcagccatagttcaggcggaacatgtcattctgcacg 208
Query: 291 aagaaggacccagcggccggcagcaaatggaatgcct 327
||||| |||||||| ||||||||||||||||||||||
Sbjct: 207 aagaatgacccagctgccggcagcaaatggaatgcct 171
Score = 56.0 bits (28), Expect = 5e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 41 gaccgtttcaattcacattccacaaagaaatggtgc 76
|||||||||| |||||||| ||||||||||||||||
Sbjct: 480 gaccgtttcagttcacattgcacaaagaaatggtgc 445
>gb|CW095825.1|CW095825 104_461_11001550_116_34335_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001550, DNA
sequence
Length = 731
Score = 319 bits (161), Expect = 2e-085
Identities = 204/217 (94%), Gaps = 1/217 (0%)
Strand = Plus / Plus
Query: 112 aagtctagcaatttcttgtaatacagtgaagcagccaacaaagaagatacaaaagagacc 171
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 316 aagtctagcaatttcttgtaatacagtgaagcagccaacaaaggagatacaaaggagaca 375
Query: 172 agagtagcggcaacattaagtattcatcgtttcaacatgaaacccttaaacaattccttc 231
|||||||||||||||||||||||| ||| |||||||||||||||||||| |||| | |||
Sbjct: 376 agagtagcggcaacattaagtattaatcatttcaacatgaaacccttaaccaatccattc 435
Query: 232 atcacaagag-tatcggctgtctttagccatagttcaggcggaacatgtcattctgcacg 290
|||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 436 atcacaagagttttcggctgtcttcagccatagttcaggcggaacatgtcattctgcacg 495
Query: 291 aagaaggacccagcggccggcagcaaatggaatgcct 327
||||| |||||||| ||||||||||||||||||||||
Sbjct: 496 aagaatgacccagctgccggcagcaaatggaatgcct 532
Score = 56.0 bits (28), Expect = 5e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 41 gaccgtttcaattcacattccacaaagaaatggtgc 76
|||||||||| |||||||| ||||||||||||||||
Sbjct: 223 gaccgtttcagttcacattgcacaaagaaatggtgc 258
>gb|CW155301.1|CW155301 104_557_11146066_116_36362_035 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146066, DNA
sequence
Length = 671
Score = 319 bits (161), Expect = 2e-085
Identities = 204/217 (94%), Gaps = 1/217 (0%)
Strand = Plus / Minus
Query: 112 aagtctagcaatttcttgtaatacagtgaagcagccaacaaagaagatacaaaagagacc 171
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 491 aagtctagcaatttcttgtaatacagtgaagcagccaacaaaggagatacaaaggagaca 432
Query: 172 agagtagcggcaacattaagtattcatcgtttcaacatgaaacccttaaacaattccttc 231
|||||||||||||||||||||||| ||| |||||||||||||||||||| |||| | |||
Sbjct: 431 agagtagcggcaacattaagtattaatcatttcaacatgaaacccttaaccaatccattc 372
Query: 232 atcacaagag-tatcggctgtctttagccatagttcaggcggaacatgtcattctgcacg 290
|||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 371 atcacaagagttttcggctgtcttcagccatagttcaggcggaacatgtcattctgcacg 312
Query: 291 aagaaggacccagcggccggcagcaaatggaatgcct 327
||||| |||||||| ||||||||||||||||||||||
Sbjct: 311 aagaatgacccagctgccggcagcaaatggaatgcct 275
Score = 56.0 bits (28), Expect = 5e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 41 gaccgtttcaattcacattccacaaagaaatggtgc 76
|||||||||| |||||||| ||||||||||||||||
Sbjct: 584 gaccgtttcagttcacattgcacaaagaaatggtgc 549
>gb|CW489645.1|CW489645 fsbb001f274l01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f274l01, DNA
sequence
Length = 655
Score = 319 bits (161), Expect = 2e-085
Identities = 204/217 (94%), Gaps = 1/217 (0%)
Strand = Plus / Minus
Query: 112 aagtctagcaatttcttgtaatacagtgaagcagccaacaaagaagatacaaaagagacc 171
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 389 aagtctagcaatttcttgtaatacagtgaagcagccaacaaaggagatacaaaggagaca 330
Query: 172 agagtagcggcaacattaagtattcatcgtttcaacatgaaacccttaaacaattccttc 231
|||||||||||||||||||||||| ||| |||||||||||||||||||| |||| | |||
Sbjct: 329 agagtagcggcaacattaagtattaatcatttcaacatgaaacccttaaccaatccattc 270
Query: 232 atcacaagag-tatcggctgtctttagccatagttcaggcggaacatgtcattctgcacg 290
|||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 269 atcacaagagttttcggctgtcttcagccatagttcaggcggaacatgtcattctgcacg 210
Query: 291 aagaaggacccagcggccggcagcaaatggaatgcct 327
||||| |||||||| ||||||||||||||||||||||
Sbjct: 209 aagaatgacccagctgccggcagcaaatggaatgcct 173
Score = 56.0 bits (28), Expect = 5e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 41 gaccgtttcaattcacattccacaaagaaatggtgc 76
|||||||||| |||||||| ||||||||||||||||
Sbjct: 482 gaccgtttcagttcacattgcacaaagaaatggtgc 447
>gb|CW140181.1|CW140181 104_530_11135646_148_34919_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135646, DNA
sequence
Length = 631
Score = 71.9 bits (36), Expect = 8e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 504 tggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcgcggttg 563
||||||||||||| |||||||||||||| ||| ||| | ||||||| ||||||| |
Sbjct: 286 tggccctcgaaggagagcatggaggtctggccgtagagcgcggccagcgcggcgcggtcg 227
Query: 564 gtgtcgaacgttcggtagtaatgctccacgaaggcc 599
| ||||||||| |||||||| || ||||||||||||
Sbjct: 226 gcgtcgaacgtgcggtagtagtgttccacgaaggcc 191
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 261 tagttcaggcggaacatgtcattctgcacgaagaag 296
||||| || ||||| |||||||||||||||||||||
Sbjct: 631 tagttgagccggaatatgtcattctgcacgaagaag 596
>gb|CW344349.1|CW344349 104_847_11487906_116_36200_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11487906, DNA
sequence
Length = 350
Score = 71.9 bits (36), Expect = 8e-011
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 504 tggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcgcggttg 563
||||||||||||| |||||||||||||| ||| ||| | ||||||| ||||||| |
Sbjct: 224 tggccctcgaaggagagcatggaggtctggccgtagagcgcggccagcgcggcgcggtcg 283
Query: 564 gtgtcgaacgttcggtagtaatgctccacgaaggcc 599
| ||||||||| |||||||| || ||||||||||||
Sbjct: 284 gcgtcgaacgtgcggtagtagtgttccacgaaggcc 319
>gb|CW426108.1|CW426108 fsbb001f137f11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f137f11, DNA
sequence
Length = 727
Score = 71.9 bits (36), Expect = 8e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 504 tggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcgcggttg 563
||||||||||||| |||||||||||||| ||| ||| | ||||||| ||||||| |
Sbjct: 473 tggccctcgaaggagagcatggaggtctggccgtagagcgcggccagcgcggcgcggtcg 414
Query: 564 gtgtcgaacgttcggtagtaatgctccacgaaggcc 599
| ||||||||| |||||||| || ||||||||||||
Sbjct: 413 gcgtcgaacgtgcggtagtagtgttccacgaaggcc 378
>gb|CW494597.1|CW494597 fsbb001f285p18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f285p18, DNA
sequence
Length = 598
Score = 71.9 bits (36), Expect = 8e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 504 tggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcgcggttg 563
||||||||||||| |||||||||||||| ||| ||| | ||||||| ||||||| |
Sbjct: 425 tggccctcgaaggagagcatggaggtctggccgtagagcgcggccagcgcggcgcggtcg 366
Query: 564 gtgtcgaacgttcggtagtaatgctccacgaaggcc 599
| ||||||||| |||||||| || ||||||||||||
Sbjct: 365 gcgtcgaacgtgcggtagtagtgttccacgaaggcc 330
>gb|CW494598.1|CW494598 fsbb001f285p18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f285p18, DNA
sequence
Length = 683
Score = 71.9 bits (36), Expect = 8e-011
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 504 tggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcgcggttg 563
||||||||||||| |||||||||||||| ||| ||| | ||||||| ||||||| |
Sbjct: 536 tggccctcgaaggagagcatggaggtctggccgtagagcgcggccagcgcggcgcggtcg 595
Query: 564 gtgtcgaacgttcggtagtaatgctccacgaaggcc 599
| ||||||||| |||||||| || ||||||||||||
Sbjct: 596 gcgtcgaacgtgcggtagtagtgttccacgaaggcc 631
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 256 agccatagttcaggcggaacatgtcattctgcacgaagaag 296
|||| ||||| || ||||| |||||||||||||||||||||
Sbjct: 186 agccgtagttgagccggaatatgtcattctgcacgaagaag 226
>gb|CN148237.1|CN148237 WOUND1_55_B10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_55_B10_A002 3', mRNA sequence
Length = 735
Score = 71.9 bits (36), Expect = 8e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 504 tggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcgcggttg 563
||||||||||||| |||||||||||||| ||| ||| | ||||||| ||||||| |
Sbjct: 245 tggccctcgaaggagagcatggaggtctggccgtagagcgcggccagcgcggcgcggtcg 186
Query: 564 gtgtcgaacgttcggtagtaatgctccacgaaggcc 599
| ||||||||| |||||||| || ||||||||||||
Sbjct: 185 gcgtcgaacgtgcggtagtagtgttccacgaaggcc 150
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 256 agccatagttcaggcggaacatgtcattctgcacgaagaag 296
|||| ||||| || ||||| |||||||||||||||||||||
Sbjct: 499 agccgtagttgagccggaatatgtcattctgcacgaagaag 459
>gb|CN148310.1|CN148310 WOUND1_55_B10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_55_B10_A002 5', mRNA sequence
Length = 782
Score = 71.9 bits (36), Expect = 8e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 504 tggccctcgaaggtgagcatggaggtctcctggtacagcccaaccagcgccgcgcggttg 563
||||||||||||| |||||||||||||| ||| ||| | ||||||| ||||||| |
Sbjct: 287 tggccctcgaaggagagcatggaggtctggccgtagagcgcggccagcgcggcgcggtcg 228
Query: 564 gtgtcgaacgttcggtagtaatgctccacgaaggcc 599
| ||||||||| |||||||| || ||||||||||||
Sbjct: 227 gcgtcgaacgtgcggtagtagtgttccacgaaggcc 192
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 256 agccatagttcaggcggaacatgtcattctgcacgaagaag 296
|||| ||||| || ||||| |||||||||||||||||||||
Sbjct: 541 agccgtagttgagccggaatatgtcattctgcacgaagaag 501
>gb|CW095826.1|CW095826 104_461_11001550_148_34331_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001550, DNA
sequence
Length = 558
Score = 67.9 bits (34), Expect = 1e-009
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 286 gcacgaagaaggacccagcggccggcagcaaatggaatgcct 327
|||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 558 gcacgaagaatgacccagctgccggcagcaaatggaatgcct 517
>gb|CW140180.1|CW140180 104_530_11135646_116_34915_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135646, DNA
sequence
Length = 686
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 256 agccatagttcaggcggaacatgtcattctgcacgaagaag 296
|||| ||||| || ||||| |||||||||||||||||||||
Sbjct: 486 agccgtagttgagccggaatatgtcattctgcacgaagaag 526
>gb|CW155302.1|CW155302 104_557_11146066_148_36361_035 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146066, DNA
sequence
Length = 698
Score = 50.1 bits (25), Expect = 3e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 44 cgtttcaattcacattccacaaagaaatggtgc 76
||||||| |||||||| ||||||||||||||||
Sbjct: 659 cgtttcagttcacattgcacaaagaaatggtgc 691
>gb|CW426107.1|CW426107 fsbb001f137f11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f137f11, DNA
sequence
Length = 726
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 504 tggccctcgaaggtgagcatggaggtct 531
||||||||||||| ||||||||||||||
Sbjct: 677 tggccctcgaaggagagcatggaggtct 704
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 290,167
Number of Sequences: 832831
Number of extensions: 290167
Number of successful extensions: 76511
Number of sequences better than 0.5: 40
Number of HSP's better than 0.5 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76350
Number of HSP's gapped (non-prelim): 122
length of query: 755
length of database: 491,359,669
effective HSP length: 20
effective length of query: 735
effective length of database: 474,703,049
effective search space: 348906741015
effective search space used: 348906741015
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)