BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441114.2.2
(962 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN125467.1|CN125467 RHOH1_11_F09.b1_A002 Acid- and alkal... 833 0.0
gb|CD225838.1|CD225838 CCC1_41_H03.g1_A007 Callus culture/c... 783 0.0
gb|CX612538.1|CX612538 GABR1_3_B03.b1_A002 GA- or brassinol... 759 0.0
gb|BE361774.1|BE361774 DG1_82_C07.b1_A002 Dark Grown 1 (DG1... 731 0.0
gb|CD428670.1|CD428670 ETH1_33_C11.g1_A002 Ethylene-treated... 718 0.0
gb|BG047885.1|BG047885 OV1_28_H12.b1_A002 Ovary 1 (OV1) Sor... 708 0.0
gb|BF317980.1|BF317980 OV1_10_C09.b1_A002 Ovary 1 (OV1) Sor... 706 0.0
gb|BG048203.1|BG048203 OV1_28_H12.g1_A002 Ovary 1 (OV1) Sor... 706 0.0
gb|BG357818.1|BG357818 OV2_30_F08.b1_A002 Ovary 2 (OV2) Sor... 684 0.0
gb|CN125551.1|CN125551 RHOH1_11_F09.g1_A002 Acid- and alkal... 660 0.0
gb|BE361835.1|BE361835 DG1_82_C07.g1_A002 Dark Grown 1 (DG1... 656 0.0
gb|BG357498.1|BG357498 OV2_30_F08.g1_A002 Ovary 2 (OV2) Sor... 654 0.0
gb|CD225729.1|CD225729 CCC1_41_H03.b1_A007 Callus culture/c... 652 0.0
gb|BF317840.1|BF317840 OV1_10_C09.g1_A002 Ovary 1 (OV1) Sor... 575 e-162
gb|BG412013.1|BG412013 OV2_40_H11.g1_A002 Ovary 2 (OV2) Sor... 567 e-160
gb|BM325874.1|BM325874 PIC1_53_H06.b1_A002 Pathogen-infecte... 563 e-158
gb|BM330587.1|BM330587 PIC1_53_H07.g1_A002 Pathogen-infecte... 462 e-128
gb|BM330586.1|BM330586 PIC1_53_H06.g1_A002 Pathogen-infecte... 418 e-115
gb|CF769697.1|CF769697 DSBF1_3_F04.b1_A010 Drought-stressed... 387 e-105
gb|CW052315.1|CW052315 104_292_10515512_114_30286 Sorghum m... 385 e-105
gb|CW243361.1|CW243361 104_703_11219979_116_37571_004 Sorgh... 385 e-105
gb|CW052317.1|CW052317 104_292_10515512_115_30287 Sorghum m... 381 e-104
gb|CL196725.1|CL196725 104_423_10943246_114_32326_061 Sorgh... 379 e-103
gb|CN129474.1|CN129474 RHOH1_35_D06.g1_A002 Acid- and alkal... 355 5e-096
gb|CW243362.1|CW243362 104_703_11219979_148_37572_004 Sorgh... 345 5e-093
gb|CF433699.1|CF433699 NIT1_28_G06.g1_A002 Nitrogen-deficie... 341 7e-092
gb|CF488389.1|CF488389 POL1_49_D06.g1_A002 Pollen Sorghum b... 313 2e-083
gb|CN129384.1|CN129384 RHOH1_35_D06.b3_A002 Acid- and alkal... 289 2e-076
gb|CN136882.1|CN136882 OX1_53_H01.g1_A002 Oxidatively-stres... 289 2e-076
gb|CN136795.1|CN136795 OX1_53_H01.b1_A002 Oxidatively-stres... 274 1e-071
gb|CW052314.1|CW052314 104_292_10515512_114_30189 Sorghum m... 258 8e-067
gb|CF485453.1|CF485453 POL1_31_D05.g1_A002 Pollen Sorghum b... 256 3e-066
gb|BE594574.1|BE594574 PI1_34_H06.b1_A002 Pathogen induced ... 254 1e-065
gb|CF433642.1|CF433642 NIT1_28_G06.b1_A002 Nitrogen-deficie... 232 5e-059
gb|CF485141.1|CF485141 POL1_29_E05.g1_A002 Pollen Sorghum b... 222 5e-056
gb|CF434383.1|CF434383 NIT1_29_F09.g1_A002 Nitrogen-deficie... 184 1e-044
gb|AW564079.1|AW564079 LG1_282_C06.b1_A002 Light Grown 1 (L... 180 2e-043
gb|CF428854.1|CF428854 PH1_18_E07.b1_A002 Phosphorous-defic... 180 2e-043
gb|BG102419.1|BG102419 RHIZ2_23_D12.b1_A003 Rhizome2 (RHIZ2... 174 1e-041
gb|CF428962.1|CF428962 PH1_18_E07.g1_A002 Phosphorous-defic... 172 4e-041
gb|CW228994.1|CW228994 104_670_11207069_116_37259_029 Sorgh... 170 2e-040
gb|CW243974.1|CW243974 104_704_11220339_116_37577_004 Sorgh... 170 2e-040
gb|CW253913.1|CW253913 104_717_11225368_116_35113_052 Sorgh... 170 2e-040
gb|CW387303.1|CW387303 fsbb001f071j10f0 Sorghum methylation... 170 2e-040
gb|CF428465.1|CF428465 PH1_15_D08.b1_A002 Phosphorous-defic... 170 2e-040
gb|CW243975.1|CW243975 104_704_11220339_148_37578_004 Sorgh... 153 4e-035
gb|CW303725.1|CW303725 104_788_11465394_116_35692_073 Sorgh... 147 2e-033
gb|CW253914.1|CW253914 104_717_11225368_148_35109_052 Sorgh... 145 9e-033
gb|AW283903.1|AW283903 LG1_282_C06.g1_A002 Light Grown 1 (L... 137 2e-030
gb|CW052316.1|CW052316 104_292_10515512_115_30190 Sorghum m... 135 8e-030
gb|CF485059.1|CF485059 POL1_29_E05.b1_A002 Pollen Sorghum b... 135 8e-030
gb|CW387304.1|CW387304 fsbb001f071j10k0 Sorghum methylation... 133 3e-029
gb|CA408285.1|CA408285 PRC-0030 pRC Sorghum halepense cDNA ... 103 3e-020
gb|CA408284.1|CA408284 PRC-0029 pRC Sorghum halepense cDNA ... 84 3e-014
gb|CW071165.1|CW071165 104_323_10591406_114_30472 Sorghum m... 72 1e-010
gb|CW101972.1|CW101972 104_470_11011088_148_34415_032 Sorgh... 66 6e-009
gb|CW265234.1|CW265234 104_734_11231752_148_35264_058 Sorgh... 66 6e-009
gb|CW484611.1|CW484611 fsbb001f246n15f0 Sorghum methylation... 66 6e-009
gb|CW056716.1|CW056716 104_298_10517831_115_30157 Sorghum m... 62 1e-007
gb|BE362521.1|BE362521 DG1_87_H03.b1_A002 Dark Grown 1 (DG1... 62 1e-007
gb|CW178634.1|CW178634 104_592_11159670_148_36619_023 Sorgh... 58 2e-006
gb|BE362553.1|BE362553 DG1_87_H03.g1_A002 Dark Grown 1 (DG1... 58 2e-006
gb|CW083687.1|CW083687 104_426_10945321_116_32440_015 Sorgh... 52 1e-004
gb|CW265233.1|CW265233 104_734_11231752_116_35260_058 Sorgh... 46 0.006
gb|CW298619.1|CW298619 104_781_11462675_116_35660_044 Sorgh... 46 0.006
gb|CW298620.1|CW298620 104_781_11462675_148_35656_044 Sorgh... 46 0.006
gb|CW302510.1|CW302510 104_786_11464758_116_35663_019 Sorgh... 46 0.006
gb|CW339570.1|CW339570 104_840_11485340_116_36145_076 Sorgh... 46 0.006
gb|CW378801.1|CW378801 fsbb001f057l18f0 Sorghum methylation... 46 0.006
gb|CW378802.1|CW378802 fsbb001f057l18k0 Sorghum methylation... 46 0.006
gb|CW409682.1|CW409682 fsbb001f104b14f0 Sorghum methylation... 46 0.006
gb|CW464331.1|CW464331 fsbb001f213i07f0 Sorghum methylation... 46 0.006
gb|CF428549.1|CF428549 PH1_15_D08.g1_A002 Phosphorous-defic... 46 0.006
gb|BE356319.1|BE356319 DG1_124_B07.b1_A002 Dark Grown 1 (DG... 42 0.093
gb|BE593783.1|BE593783 WS1_102_B07.g1_A002 Water-stressed 1... 42 0.093
gb|CL156080.1|CL156080 104_342_10782609_114_31473_321 Sorgh... 40 0.37
gb|CW425466.1|CW425466 fsbb001f136f22k0 Sorghum methylation... 40 0.37
gb|CW432352.1|CW432352 fsbb001f147a05k0 Sorghum methylation... 40 0.37
>gb|CN125467.1|CN125467 RHOH1_11_F09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_11_F09_A002 3', mRNA sequence
Length = 755
Score = 833 bits (420), Expect = 0.0
Identities = 591/647 (91%), Gaps = 7/647 (1%)
Strand = Plus / Minus
Query: 144 agaacagaccgatctattgatgggtaagacgaatctgtaataagtgttttttatgatatc 203
|||||||||||||||||||||||||| ||||||||||||| | ||||| | ||||
Sbjct: 640 agaacagaccgatctattgatgggtatgacgaatctgtaaa-----tgttttacggtatc 586
Query: 204 cgacaagggtatatgtgtagatcaggctgaacccttgagcttcttggcgatgcctgcgaa 263
|| |||||||| ||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 585 tgaaaagggtat--gtgcagatcaagcagaacccttgagcttcttggcgatgcctgcgaa 528
Query: 264 gtacttcccctggtggaaggcgtgctccagctccacctcgctcggccacctcgagccgtc 323
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 527 gtacttcccctggtgaaaggcgtgctcgagctccacctcactcggccacctcgagccgtc 468
Query: 324 ggcggcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacag 383
||| ||||||||||| || || ||||||||||| ||||||||||||||||||||||||||
Sbjct: 467 ggcagcgaacgtgccagcaccataggggctgccaccctgaacctggtccatgccgaacag 408
Query: 384 cttggcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggt 443
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 407 cttggcgccgaaggtgtagcccacaggcacaaacaccatgccgtggtgtgtcaactgggt 348
Query: 444 gatcgctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgcagaagaagac 503
||||| ||||||| ||| ||||| |||||||||||||||| |||||||| ||| ||||
Sbjct: 347 aatcgcggtcaacggtgtagtctcttggccaccaccctgggttccagtgctgaaaaagat 288
Query: 504 gccggcaggcttgccggcaaggctctgctccctccagagcccaccagtggcatcgaagaa 563
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 287 gccggcaggcttgccagcaaggctctgctccctccagagcccaccagtagcatcgaagaa 228
Query: 564 cgccttcatctgcgctgccatcattccgaacctcgttgggaacccgaagaggattccgtc 623
||||||||| ||||||||||||||||| ||||| ||||| ||||| ||||||||||| ||
Sbjct: 227 cgccttcatttgcgctgccatcattccaaaccttgttggaaaccccaagaggattccatc 168
Query: 624 ggcctctgcgagttcttgcggcgtgatgactggcacgtcaggcttagggggtgcgcccat 683
|| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 167 agcttctgcaagttcttgcggtgtgatgactggcacatcaggcttagggggtgcgcccat 108
Query: 684 ctttccaagcacttcctcagggagggtttcagggacctgccatgttttagcttcaacacc 743
|||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct: 107 ctttccaagcacttcctcagggagagtttcagggacctgccatattttagcctcaacacc 48
Query: 744 ttcaacagacgaggcacctttctggatctcttcagctagtttgccaa 790
||||| ||| || |||||||||| |||||||||||||||||||||||
Sbjct: 47 ttcaatagatgaagcacctttcttgatctcttcagctagtttgccaa 1
Score = 54.0 bits (27), Expect = 2e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 69 tccaactccagattacaacaaagtcaccgtagcatgaaa 107
||||||||||||||||||| |||||||| |||||||||
Sbjct: 717 tccaactccagattacaaccaagtcaccagagcatgaaa 679
>gb|CD225838.1|CD225838 CCC1_41_H03.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_41_H03_A007 5', mRNA sequence
Length = 634
Score = 783 bits (395), Expect = 0.0
Identities = 536/582 (92%), Gaps = 7/582 (1%)
Strand = Plus / Minus
Query: 316 gagccgtcggcggcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatg 375
||||||||||| ||||||||||| || || ||||||||||| ||||||||||||||||||
Sbjct: 634 gagccgtcggcagcgaacgtgccagcaccataggggctgccaccctgaacctggtccatg 575
Query: 376 ccgaacagcttggcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtc 435
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 574 ccgaacagcttggcgccgaaggtgtagcccacaggcacaaacaccatgccgtggtgtgtc 515
Query: 436 aactgggtgatcgctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgcag 495
|||||||| ||||| ||||||| ||| ||||| |||||||||||||||| |||||||| |
Sbjct: 514 aactgggtaatcgcggtcaacggtgtagtctcttggccaccaccctgggttccagtgctg 455
Query: 496 aagaagacgccggcaggcttgccggcaaggctctgctccctccagagcccaccagtggca 555
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 454 aagaagatgccggcaggcttgccagcaaggctctgctccctccagagcccaccagtagca 395
Query: 556 tcgaagaacgccttcatctgcgctgccatcattccgaacctcgttgggaacccgaagagg 615
||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 394 tcgaagaacgccttcatttgcgctgccatcattccaaaccttgttggaaacccgaagagg 335
Query: 616 attccgtcggcctctgcgagttcttgcggcgtgatgactggcacgtcaggcttagggggt 675
||||| || || ||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 334 attccatcagcttctgcaagttcttgcggtgtgatgactggcacatcaggcttagggggt 275
Query: 676 gcgcccatctttccaagcacttcctcagggagggtttcagggacctgccatgttttagct 735
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 274 gcgcccatctttccaagcacttcctcagggagagtttcagggacctgccatattttagcc 215
Query: 736 tcaacaccttcaacagacgaggcacctttctggatctcttcagctagtttgccaacatgt 795
||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 214 tcaacaccttcaatagatgaggcacctttcttgatctcttcagctagtttgccaacatgt 155
Query: 796 ccatacatggaatagtacacgacgtagaccttaaccgccattggagagggctcggagtcg 855
|||||| |||| |||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 154 ccatacgtggagtagtacacgacgtagaccttgaccgccattggagagggc------tcg 101
Query: 856 gagttcctgtgaccgg-ggcagatctggcaactcctgcggcg 896
||| |||||||||||| || |||||||| |||||||||||||
Sbjct: 100 gagctcctgtgaccggaggaagatctggaaactcctgcggcg 59
>gb|CX612538.1|CX612538 GABR1_3_B03.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_3_B03_A002 3', mRNA sequence
Length = 734
Score = 759 bits (383), Expect = 0.0
Identities = 530/578 (91%), Gaps = 7/578 (1%)
Strand = Plus / Minus
Query: 144 agaacagaccgatctattgatgggtaagacgaatctgtaataagtgttttttatgatatc 203
|||||||||||||||||||||||||| ||||||||||||| | ||||| | ||||
Sbjct: 672 agaacagaccgatctattgatgggtatgacgaatctgtaaa-----tgttttacggtatc 618
Query: 204 cgacaagggtatatgtgtagatcaggctgaacccttgagcttcttggcgatgcctgcgaa 263
|| |||||||| ||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 617 tgagaagggtat--gtgcagatcaagcagaacccttgagcttcttggcgatgcctgcgaa 560
Query: 264 gtacttcccctggtggaaggcgtgctccagctccacctcgctcggccacctcgagccgtc 323
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 559 gtacttcccctggtgaaaggcgtgctcgagctccacctcactcggccacctcgagccgtc 500
Query: 324 ggcggcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacag 383
||| ||||||||||| || || ||||||||||| ||||||||||||||||||||||||||
Sbjct: 499 ggcagcgaacgtgccagcaccataggggctgccaccctgaacctggtccatgccgaacag 440
Query: 384 cttggcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggt 443
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 439 cttggcgccgaaggtgtagcccacaggcacaaacaccatgccgtggtgtgtcaactgggt 380
Query: 444 gatcgctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgcagaagaagac 503
||||| ||||||| ||| ||||| |||||||||||||||| |||||||| ||||||||
Sbjct: 379 aatcgcggtcaacggtgtagtctcttggccaccaccctgggttccagtgctgaagaagat 320
Query: 504 gccggcaggcttgccggcaaggctctgctccctccagagcccaccagtggcatcgaagaa 563
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 319 gccggcaggcttgccagcaaggctctgctccctccagagcccaccagtagcatcgaagaa 260
Query: 564 cgccttcatctgcgctgccatcattccgaacctcgttgggaacccgaagaggattccgtc 623
||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||| ||
Sbjct: 259 cgccttcatttgcgctgccatcattccaaaccttgttggaaacccgaagaggattccatc 200
Query: 624 ggcctctgcgagttcttgcggcgtgatgactggcacgtcaggcttagggggtgcgcccat 683
|| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 199 agcttctgcaagttcttgcggtgtgatgactggcacatcaggcttagggggtgcgcccat 140
Query: 684 ctttccaagcacttcctcagggagggtttcagggacct 721
|||||||||||||||||||||||| |||||||||||||
Sbjct: 139 ctttccaagcacttcctcagggagagtttcagggacct 102
>gb|BE361774.1|BE361774 DG1_82_C07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 573
Score = 731 bits (369), Expect = 0.0
Identities = 497/539 (92%), Gaps = 7/539 (1%)
Strand = Plus / Minus
Query: 359 cctgaacctggtccatgccgaacagcttggcgccgaaggtgtagcccacaggcacgaaca 418
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 573 cctgaacctggtccatgccgaacagcttggcgcngaaggtgtagcccacaggcacaaaca 514
Query: 419 ccatgccgtggtgcgtcaactgggtgatcgctgtcaacgctgtcgtctcctggccaccac 478
||||||||||||| ||||||||||| ||||| ||||||| ||| ||||| ||||||||||
Sbjct: 513 ccatgccgtggtgtgtcaactgggtaatcgcggtcaacggtgtagtctcttggccaccac 454
Query: 479 cctgggatccagtgcagaagaagacgccggcaggcttgccggcaaggctctgctccctcc 538
|||||| |||||||| |||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 453 cctgggttccagtgctgaagaagatgccggcaggcttgccagcaaggctctgctccctcc 394
Query: 539 agagcccaccagtggcatcgaagaacgccttcatctgcgctgccatcattccgaacctcg 598
||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct: 393 agagcccaccagtagcatcgaagaacgccttcatttgcgctgccatcattccaaaccttg 334
Query: 599 ttgggaacccgaagaggattccgtcggcctctgcgagttcttgcggcgtgatgactggca 658
|||| ||||||||||||||||| || || ||||| ||||||||||| |||||||||||||
Sbjct: 333 ttggaaacccgaagaggattccatcagcttctgcaagttcttgcggtgtgatgactggca 274
Query: 659 cgtcaggcttagggggtgcgcccatctttccaagcacttcctcagggagggtttcaggga 718
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 273 catcaggcttagggggtgcgcccatctttccaagcacttcctcagggagagtttcaggga 214
Query: 719 cctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttcag 778
|||||||| ||||||| ||||||||||||| ||| ||||||||||||| |||||||||||
Sbjct: 213 cctgccatattttagcctcaacaccttcaatagatgaggcacctttcttgatctcttcag 154
Query: 779 ctagtttgccaacatgtccatacatggaatagtacacgacgtagaccttaaccgccattg 838
||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||
Sbjct: 153 ctagtttgccaacatgtccatacgtggagtagtacacgacgtagaccttgaccgccattg 94
Query: 839 gagagggctcggagtcggagttcctgtgaccgg-ggcagatctggcaactcctgcggcg 896
||||||||| ||||| |||||||||||| || |||||||| |||||||||||||
Sbjct: 93 gagagggct------cggagctcctgtgaccggaggaagatctggaaactcctgcggcg 41
>gb|CD428670.1|CD428670 ETH1_33_C11.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_33_C11_A002 5', mRNA sequence
Length = 615
Score = 718 bits (362), Expect = 0.0
Identities = 507/553 (91%), Gaps = 8/553 (1%)
Strand = Plus / Minus
Query: 346 taggggctgccgccctgaacctggtccatgccgaacagcttggcgccgaaggtgtagccc 405
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 taggggctgccaccatgaacctggtccatgccgaacagcttggcgccgaaggtgtagccc 544
Query: 406 acaggcacgaacaccatgccgtggtgcgtcaactgggtgatcgctgtcaacgctgtcgtc 465
|||||||| ||||||||||||||||| ||||||||||| ||||| ||||| | ||| |||
Sbjct: 543 acaggcacaaacaccatgccgtggtgtgtcaactgggtaatcgcggtcaatggtgtagtc 484
Query: 466 tcctggccaccaccctgggatccagtgcagaagaagacgccggcaggcttgccggcaagg 525
|| |||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||||
Sbjct: 483 tcttggccaccaccctgggttccagtgctgaagaagatgccggcaggcttgccagcaagg 424
Query: 526 ctctgctccctccagagcccaccagtggcatcgaagaacgccttcatctgcgctgccatc 585
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 423 ctctgctccctccagagcccaccagtagcatcgaagaacgccttcatttgcgctgccatc 364
Query: 586 attccgaacctcgttgggaacccgaagaggattccgtcggcctctgcgagttcttgcggc 645
||||| ||||| ||||| ||||||||||||||||| || || ||||| |||||||||||
Sbjct: 363 attccaaaccttgttggaaacccgaagaggattccatcagcttctgcaagttcttgcggt 304
Query: 646 gtgatgactggcacgtcaggcttagggggtgcgcccatctttccaagcacttcctcaggg 705
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gtgatgactggcacatcaggcttagggggtgcgcccatctttccaagcacttcctcaggg 244
Query: 706 agggtttcagggacctgccatgttttagcttcaacaccttcaacagacgaggcacctttc 765
|| |||||||||||||||||| ||||||| ||||||||||||| ||| ||||||||||||
Sbjct: 243 agagtttcagggacctgccatattttagcctcaacaccttcaatagatgaggcacctttc 184
Query: 766 tggatctcttcagctagtttgccaacatgtccatacatggaatagtacacgacgtagacc 825
| ||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 183 ttgatctctccagctagtttgccaacatgtccatacgtggagtagtacacgacgtagacc 124
Query: 826 ttaaccgccattgga-gagggctcggagtcggagttcctgtgaccgg-ggcagatctggc 883
|| |||||||||||| |||||| |||||| |||||||||||| || ||||||||
Sbjct: 123 ttgaccgccattggatgagggc------tcggagctcctgtgaccggaggaagatctgga 70
Query: 884 aactcctgcggcg 896
|||||||||||||
Sbjct: 69 aactcctgcggcg 57
>gb|BG047885.1|BG047885 OV1_28_H12.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 548
Score = 708 bits (357), Expect = 0.0
Identities = 483/524 (92%), Gaps = 7/524 (1%)
Strand = Plus / Minus
Query: 374 tgccgaacagcttggcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcg 433
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 548 tgccgaacagcttggcgccgaaggtgtagcccacaggcacaaacaccatgccgtggtgtg 489
Query: 434 tcaactgggtgatcgctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgc 493
|||||||||| ||||| ||||||| ||| ||||| |||||||||||||||| ||||||||
Sbjct: 488 tcaactgggtaatcgcggtcaacggtgtagtctcttggccaccaccctgggttccagtgc 429
Query: 494 agaagaagacgccggcaggcttgccggcaaggctctgctccctccagagcccaccagtgg 553
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 428 tgaagaagatgccggcaggcttgccagcaaggctctgctccctccagagcccaccagtag 369
Query: 554 catcgaagaacgccttcatctgcgctgccatcattccgaacctcgttgggaacccgaaga 613
||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||
Sbjct: 368 catcgaagaacgccttcatttgcgctgccatcattccaaaccttgttggaaacccgaaga 309
Query: 614 ggattccgtcggcctctgcgagttcttgcggcgtgatgactggcacgtcaggcttagggg 673
||||||| || || ||||| ||||||||||| |||||||||||||| |||||||||||||
Sbjct: 308 ggattccatcagcttctgcaagttcttgcggtgtgatgactggcacatcaggcttagggg 249
Query: 674 gtgcgcccatctttccaagcacttcctcagggagggtttcagggacctgccatgttttag 733
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 248 gtgcgcccatctttccaagcacttcctcagggagagtttcagggacctgccatattttag 189
Query: 734 cttcaacaccttcaacagacgaggcacctttctggatctcttcagctagtttgccaacat 793
| ||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 188 cctcaacaccttcaatagatgaggcacctttcttgatctcttcagctagtttgccaacat 129
Query: 794 gtccatacatggaatagtacacgacgtagaccttaaccgccattggagagggctcggagt 853
|||||||| |||| |||||||||||||||||||| |||||||||||||||||| |
Sbjct: 128 gtccatacgtggagtagtacacgacgtagaccttgaccgccattggagagggc------t 75
Query: 854 cggagttcctgtgaccgg-ggcagatctggcaactcctgcggcg 896
||||| |||||||||||| || |||||||| |||||||||||||
Sbjct: 74 cggagctcctgtgaccggaggaagatctggaaactcctgcggcg 31
>gb|BF317980.1|BF317980 OV1_10_C09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 547
Score = 706 bits (356), Expect = 0.0
Identities = 482/523 (92%), Gaps = 7/523 (1%)
Strand = Plus / Minus
Query: 375 gccgaacagcttggcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgt 434
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 547 gccgaacagcttggcgccgaaggtgtagcccacaggcacaaacaccatgccgtggtgtgt 488
Query: 435 caactgggtgatcgctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgca 494
||||||||| ||||| ||||||| ||| ||||| |||||||||||||||| ||||||||
Sbjct: 487 caactgggtaatcgcggtcaacggtgtagtctcttggccaccaccctgggttccagtgct 428
Query: 495 gaagaagacgccggcaggcttgccggcaaggctctgctccctccagagcccaccagtggc 554
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 427 gaagaagatgccggcaggcttgccagcaaggctctgctccctccagagcccaccagtagc 368
Query: 555 atcgaagaacgccttcatctgcgctgccatcattccgaacctcgttgggaacccgaagag 614
|||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 367 atcgaagaacgccttcatttgcgctgccatcattccaaaccttgttggaaacccgaagag 308
Query: 615 gattccgtcggcctctgcgagttcttgcggcgtgatgactggcacgtcaggcttaggggg 674
|||||| || || ||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 307 gattccatcagcttctgcaagttcttgcggtgtgatgactggcacatcaggcttaggggg 248
Query: 675 tgcgcccatctttccaagcacttcctcagggagggtttcagggacctgccatgttttagc 734
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 247 tgcgcccatctttccaagcacttcctcagggagagtttcagggacctgccatattttagc 188
Query: 735 ttcaacaccttcaacagacgaggcacctttctggatctcttcagctagtttgccaacatg 794
||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 187 ctcaacaccttcaatagatgaggcacctttcttgatctcttcagctagtttgccaacatg 128
Query: 795 tccatacatggaatagtacacgacgtagaccttaaccgccattggagagggctcggagtc 854
||||||| |||| |||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 127 tccatacgtggagtagtacacgacgtagaccttgaccgccattggagagggc------tc 74
Query: 855 ggagttcctgtgaccgg-ggcagatctggcaactcctgcggcg 896
|||| |||||||||||| || |||||||| |||||||||||||
Sbjct: 73 ggagctcctgtgaccggaggaagatctggaaactcctgcggcg 31
>gb|BG048203.1|BG048203 OV1_28_H12.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 592
Score = 706 bits (356), Expect = 0.0
Identities = 502/550 (91%), Gaps = 7/550 (1%)
Strand = Plus / Minus
Query: 144 agaacagaccgatctattgatgggtaagacgaatctgtaataagtgttttttatgatatc 203
|||||||||||||||||||||||||| ||||||||||||| | ||||| | ||||
Sbjct: 543 agaacagaccgatctattgatgggtatgacgaatctgtaaa-----tgttttacggtatc 489
Query: 204 cgacaagggtatatgtgtagatcaggctgaacccttgagcttcttggcgatgcctgcgaa 263
|| |||||||| ||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 488 tgagaagggtat--gtgcagatcaagcagaacccttgagcttcttggcgatgcctgcgaa 431
Query: 264 gtacttcccctggtggaaggcgtgctccagctccacctcgctcggccacctcgagccgtc 323
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 430 gtacttcccctggtgaaaggcgtgctcgagctccacctcactcggccacctcgagccgtc 371
Query: 324 ggcggcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacag 383
||| ||||||||||| || || ||||||||||| ||||||||||||||||||||||||||
Sbjct: 370 ggcagcgaacgtgccagcaccataggggctgccaccctgaacctggtccatgccgaacag 311
Query: 384 cttggcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggt 443
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 310 cttggcgccgaaggtgtagcccacaggcacaaacaccatgccgtggtgtgtcaactgggt 251
Query: 444 gatcgctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgcagaagaagac 503
||||| ||||||| ||| ||||| |||||||||||||||| |||||||| ||||||||
Sbjct: 250 aatcgcggtcaacggtgtagtctcttggccaccaccctgggttccagtgctgaagaagat 191
Query: 504 gccggcaggcttgccggcaaggctctgctccctccagagcccaccagtggcatcgaagaa 563
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 190 gccggcaggcttgccagcaaggctctgctccctccagagcccaccagtagcatcgaagaa 131
Query: 564 cgccttcatctgcgctgccatcattccgaacctcgttgggaacccgaagaggattccgtc 623
||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||| ||
Sbjct: 130 cgccttcatttgcgctgccatcattccaaaccttgttggaaacccgaagaggattccatc 71
Query: 624 ggcctctgcgagttcttgcggcgtgatgactggcacgtcaggcttagggggtgcgcccat 683
|| ||||| ||||||||||| |||||||||||||| ||||||||| |||||||||||||
Sbjct: 70 agcttctgcaagttcttgcggtgtgatgactggcacatcaggcttanggggtgcgcccat 11
Query: 684 ctttccaagc 693
||||||||||
Sbjct: 10 ctttccaagc 1
>gb|BG357818.1|BG357818 OV2_30_F08.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 563
Score = 684 bits (345), Expect = 0.0
Identities = 485/528 (91%), Gaps = 9/528 (1%)
Strand = Plus / Minus
Query: 371 ccatgccgaacagcttggcgccgaaggtg-tagcccacaggcacgaacaccatgccgtgg 429
||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||
Sbjct: 563 ccatgccgaacagcttggcgc-gaaggtggtagcccacaggcacaaacaccatgccgtgg 505
Query: 430 tgcgtcaactgggtgatcgctgtcaacgctgtcgtctcctggccaccaccctgggatcca 489
|| ||||||||||| ||||| ||||||| ||| ||||| |||||||||||||||| ||||
Sbjct: 504 tgtgtcaactgggtaatcgcggtcaacggtgtagtctcttggccaccaccctgggttcca 445
Query: 490 gtgcagaagaagacgccggcaggcttgccggcaaggctctgctccctccagagcccacca 549
|||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 444 gtgctgaagaagatgccggcaggcttgccagcaaggctctgctccctccagagcccacca 385
Query: 550 gtggcatcgaagaacgccttcatctgcgctgccatcattccgaacctcgttgggaacccg 609
|| |||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||
Sbjct: 384 gtagcatcgaagaacgccttcatttgcgctgccatcattccaaaccttgttggaaacccg 325
Query: 610 aagaggattccgtcggcctctgcgagttcttgcggcgtgatgactggcacgtcaggctta 669
||||||||||| || || ||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 324 aagaggattccatcagcttctgcaagttcttgcggtgtgatgactggcacatcaggctta 265
Query: 670 gggggtgcgcccatctttccaagcacttcctcagggagggtttcagggacctgccatgtt 729
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 264 gggggtgcgcccatctttccaagcacttcctcagggagagtttcagggacctgccatatt 205
Query: 730 ttagcttcaacaccttcaacagacgaggcacctttctggatctcttcagctagtttgcca 789
||||| ||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 204 ttagcctcaacaccttcaatagatgaggcacctttcttgatctcttcagctagtttgcca 145
Query: 790 acatgtccatacatggaatagtacacgacgtagaccttaaccgccattggagagggctcg 849
|||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 144 acatgtccatacgtggagtagtacacgacgtagaccttgaccgccattggagagggc--- 88
Query: 850 gagtcggagttcctgtgaccgg-ggcagatctggcaactcctgcggcg 896
|||||| |||||||||||| || |||||||| |||||||||||||
Sbjct: 87 ---tcggagctcctgtgaccggaggaagatctggaaactcctgcggcg 43
>gb|CN125551.1|CN125551 RHOH1_11_F09.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_11_F09_A002 5', mRNA sequence
Length = 546
Score = 660 bits (333), Expect = 0.0
Identities = 462/504 (91%), Gaps = 7/504 (1%)
Strand = Plus / Minus
Query: 394 aaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggtgatcgctgtc 453
|||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||
Sbjct: 546 aaggtgtagcccacaggcacaaacaccatgccgtggtgtgtcaactgggtaatcgcggtc 487
Query: 454 aacgctgtcgtctcctggccaccaccctgggatccagtgcagaagaagacgccggcaggc 513
|||| ||| ||||| ||||||||||| |||| |||||||| |||||||| ||||||||||
Sbjct: 486 aacggtgtagtctcttggccaccaccgtgggttccagtgctgaagaagatgccggcaggc 427
Query: 514 ttgccggcaaggctctgctccctccagagcccaccagtggcatcgaagaacgccttcatc 573
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 426 ttgccagcaaggctctgctccctccagagcccaccagtagcatcgaagaacgccttcatc 367
Query: 574 tgcgctgccatcattccgaacctcgttgggaacccgaagaggattccgtcggcctctgcg 633
||||||||||||||||| ||||| ||||| ||||||||||||||||| || || |||||
Sbjct: 366 tgcgctgccatcattccaaaccttgttggaaacccgaagaggattccatcagcttctgca 307
Query: 634 agttcttgcggcgtgatgactggcacgtcaggcttagggggtgcgcccatctttccaagc 693
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 306 agttcatgcggtgtgatgactggcacatcaggcttagggggtgcgcccatctttccaagc 247
Query: 694 acttcctcagggagggtttcagggacctgccatgttttagcttcaacaccttcaacagac 753
|||||||||||||| |||||||||||||||||| ||||||| ||||||||||||| |||
Sbjct: 246 acttcctcagggagagtttcagggacctgccatattttagcctcaacaccttcaatagat 187
Query: 754 gaggcacctttctggatctcttcagctagtttgccaacatgtccatacatggaatagtac 813
||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 186 gaggcacctttcttgatctcttcagctagtttgccaacatgtccatacgtggagtagtac 127
Query: 814 acgacgtagaccttaaccgccattggagagggctcggagtcggagttcctgtgaccgg-g 872
|||||||||||||| ||||||||||||||||||| ||||| |||||||||||| |
Sbjct: 126 acgacgtagaccttgaccgccattggagagggct------cggagctcctgtgaccggag 73
Query: 873 gcagatctggcaactcctgcggcg 896
| |||||||| |||||||||||||
Sbjct: 72 gaagatctggaaactcctgcggcg 49
>gb|BE361835.1|BE361835 DG1_82_C07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 579
Score = 656 bits (331), Expect = 0.0
Identities = 475/522 (90%), Gaps = 7/522 (1%)
Strand = Plus / Minus
Query: 144 agaacagaccgatctattgatgggtaagacgaatctgtaataagtgttttttatgatatc 203
|||||||||||||||||||||||||| ||||||||||||| | ||||| | ||||
Sbjct: 515 agaacagaccgatctattgatgggtatgacgaatctgtaaa-----tgttttacggtatc 461
Query: 204 cgacaagggtatatgtgtagatcaggctgaacccttgagcttcttggcgatgcctgcgaa 263
|| |||||||| ||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 460 tgagaagggtat--gtgcagatcaagcagaacccttgagcttcttggcgatgcctgcgaa 403
Query: 264 gtacttcccctggtggaaggcgtgctccagctccacctcgctcggccacctcgagccgtc 323
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 402 gtacttcccctggtgaaaggcgtgctcgagctccacctcactcggccacctcgagccgtc 343
Query: 324 ggcggcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacag 383
||| ||||||||||| || || ||||||||||| ||||||||||||||||||||||||||
Sbjct: 342 ggcagcgaacgtgccagcaccataggggctgccaccctgaacctggtccatgccgaacag 283
Query: 384 cttggcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggt 443
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 282 cttggcgccgaaggtgtagcccacaggcacaaacaccatgccgtggtgtgtcaactgggt 223
Query: 444 gatcgctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgcagaagaagac 503
||||| ||||||| ||| ||||| |||||||||||||||| |||||||| ||||||||
Sbjct: 222 aatcgcggtcaacggtgtagtctcttggccaccaccctgggttccagtgctgaagaagat 163
Query: 504 gccggcaggcttgccggcaaggctctgctccctccagagcccaccagtggcatcgaagaa 563
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 162 gccggcaggcttgccagcaaggctctgctccctccagagcccaccagtagcatcgaagaa 103
Query: 564 cgccttcatctgcgctgccatcattccgaacctcgttgggaacccgaagaggattccgtc 623
||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||| ||
Sbjct: 102 cgccttcatttgcgctgccatcattccaaaccttgttggaaacccgaagaggattccatc 43
Query: 624 ggcctctgcgagttcttgcggcgtgatgactggcacgtcagg 665
|| ||||| ||||||||||| |||||||||||||| |||||
Sbjct: 42 agcttctgcaagttcttgcggtgtgatgactggcacatcagg 1
>gb|BG357498.1|BG357498 OV2_30_F08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 564
Score = 654 bits (330), Expect = 0.0
Identities = 474/521 (90%), Gaps = 7/521 (1%)
Strand = Plus / Minus
Query: 144 agaacagaccgatctattgatgggtaagacgaatctgtaataagtgttttttatgatatc 203
|||||||||||||||||||||||||| ||||||||||||| | ||||| | ||||
Sbjct: 514 agaacagaccgatctattgatgggtatgacgaatctgtaaa-----tgttttacggtatc 460
Query: 204 cgacaagggtatatgtgtagatcaggctgaacccttgagcttcttggcgatgcctgcgaa 263
|| |||||||| ||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 459 tgagaagggtat--gtgcagatcaagcagaacccttgagcttcttggcgatgcctgcgaa 402
Query: 264 gtacttcccctggtggaaggcgtgctccagctccacctcgctcggccacctcgagccgtc 323
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 401 gtacttcccctggtgaaaggcgtgctcgagctccacctcactcggccacctcgagccgtc 342
Query: 324 ggcggcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacag 383
||| ||||||||||| || || ||||||||||| ||||||||||||||||||||||||||
Sbjct: 341 ggcagcgaacgtgccagcaccataggggctgccaccctgaacctggtccatgccgaacag 282
Query: 384 cttggcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggt 443
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 281 cttggcgccgaaggtgtagcccacaggcacaaacaccatgccgtggtgtgtcaactgggt 222
Query: 444 gatcgctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgcagaagaagac 503
||||| ||||||| ||| ||||| |||||||||||||||| |||||||| ||||||||
Sbjct: 221 aatcgcggtcaacggtgtagtctcttggccaccaccctgggttccagtgctgaagaagat 162
Query: 504 gccggcaggcttgccggcaaggctctgctccctccagagcccaccagtggcatcgaagaa 563
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 161 gccggcaggcttgccagcaaggctctgctccctccagagcccaccagtagcatcgaagaa 102
Query: 564 cgccttcatctgcgctgccatcattccgaacctcgttgggaacccgaagaggattccgtc 623
||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||| ||
Sbjct: 101 cgccttcatttgcgctgccatcattccaaaccttgttggaaacccgaagaggattccatc 42
Query: 624 ggcctctgcgagttcttgcggcgtgatgactggcacgtcag 664
|| ||||| ||||||||||| |||||||||||||| ||||
Sbjct: 41 agcttctgcaagttcttgcggtgtgatgactggcacatcag 1
>gb|CD225729.1|CD225729 CCC1_41_H03.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_41_H03_A007 3', mRNA sequence
Length = 649
Score = 652 bits (329), Expect = 0.0
Identities = 470/516 (91%), Gaps = 7/516 (1%)
Strand = Plus / Minus
Query: 144 agaacagaccgatctattgatgggtaagacgaatctgtaataagtgttttttatgatatc 203
|||||||||||||||||||||||||| ||||||||||||| | ||||| | ||||
Sbjct: 512 agaacagaccgatctattgatgggtatgacgaatctgtaaa-----tgttttacggtatc 458
Query: 204 cgacaagggtatatgtgtagatcaggctgaacccttgagcttcttggcgatgcctgcgaa 263
|| |||||||| ||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 457 tgagaagggtat--gtgcagatcaagcagaacccttgagcttcttggcgatgcctgcgaa 400
Query: 264 gtacttcccctggtggaaggcgtgctccagctccacctcgctcggccacctcgagccgtc 323
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 399 gtacttcccctggtgaaaggcgtgctcgagctccacctcactcggccacctcgagccgtc 340
Query: 324 ggcggcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacag 383
||| ||||||||||| || || ||||||||||| ||||||||||||||||||||||||||
Sbjct: 339 ggcagcgaacgtgccagcaccataggggctgccaccctgaacctggtccatgccgaacag 280
Query: 384 cttggcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggt 443
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 279 cttggcgccgaaggtgtagcccacaggcacaaacaccatgccgtggtgtgtcaactgggt 220
Query: 444 gatcgctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgcagaagaagac 503
||||| ||||||| ||| ||||| |||||||||||||||| |||||||| ||||||||
Sbjct: 219 aatcgcggtcaacggtgtagtctcttggccaccaccctgggttccagtgctgaagaagat 160
Query: 504 gccggcaggcttgccggcaaggctctgctccctccagagcccaccagtggcatcgaagaa 563
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 159 gccggcaggcttgccagcaaggctctgctccctccagagcccaccagtagcatcgaagaa 100
Query: 564 cgccttcatctgcgctgccatcattccgaacctcgttgggaacccgaagaggattccgtc 623
||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||| ||
Sbjct: 99 cgccttcatttgcgctgccatcattccaaaccttgttggaaacccgaagaggattccatc 40
Query: 624 ggcctctgcgagttcttgcggcgtgatgactggcac 659
|| ||||| ||||||||||| ||||||||||||||
Sbjct: 39 agcttctgcaagttcttgcggtgtgatgactggcac 4
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/87 (85%), Gaps = 4/87 (4%)
Strand = Plus / Minus
Query: 24 cgtttacttgagcaaatcatcgaaatttatgcgaaacaa---cgatattccaactccaga 80
|||||| |||||||| ||||||||||||| |||| | || | ||| ||||||||||||
Sbjct: 636 cgtttagttgagcaa-tcatcgaaatttaagcgacagaaacacaatagtccaactccaga 578
Query: 81 ttacaacaaagtcaccgtagcatgaaa 107
||||||| |||||||| |||||||||
Sbjct: 577 ttacaaccaagtcaccagagcatgaaa 551
>gb|BF317840.1|BF317840 OV1_10_C09.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 497
Score = 575 bits (290), Expect = e-162
Identities = 407/445 (91%), Gaps = 7/445 (1%)
Strand = Plus / Minus
Query: 144 agaacagaccgatctattgatgggtaagacgaatctgtaataagtgttttttatgatatc 203
|||||||||||||||||||||||||| ||||||||||||| | ||||| | ||||
Sbjct: 438 agaacagaccgatctattgatgggtatgacgaatctgtaaa-----tgttttacggtatc 384
Query: 204 cgacaagggtatatgtgtagatcaggctgaacccttgagcttcttggcgatgcctgcgaa 263
|| |||||||| ||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 383 tgagaagggtat--gtgcagatcaagcagaacccttgagcttcttggcgatgcctgcgaa 326
Query: 264 gtacttcccctggtggaaggcgtgctccagctccacctcgctcggccacctcgagccgtc 323
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 325 gtacttcccctggtgaaaggcgtgctcgagctccacctcactcggccacctcgagccgtc 266
Query: 324 ggcggcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacag 383
||| ||||||||||| || || ||||||||||| ||||||||||||||||||||||||||
Sbjct: 265 ggcagcgaacgtgccagcaccataggggctgccaccctgaacctggtccatgccgaacag 206
Query: 384 cttggcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggt 443
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 205 cttggcgccgaaggtgtagcccacaggcacaaacaccatgccgtggtgtgtcaactgggt 146
Query: 444 gatcgctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgcagaagaagac 503
||||| ||||||| ||| ||||| |||||||||||||||| |||||||| ||||||||
Sbjct: 145 aatcgcggtcaacggtgtagtctcttggccaccaccctgggttccagtgctgaagaagat 86
Query: 504 gccggcaggcttgccggcaaggctctgctccctccagagcccaccagtggcatcgaagaa 563
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 85 gccggcaggcttgccagcaaggctctgctccctccagagcccaccagtagcatcgaagaa 26
Query: 564 cgccttcatctgcgctgccatcatt 588
||||||||| |||||||||||||||
Sbjct: 25 cgccttcatttgcgctgccatcatt 1
>gb|BG412013.1|BG412013 OV2_40_H11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 503
Score = 567 bits (286), Expect = e-160
Identities = 406/445 (91%), Gaps = 7/445 (1%)
Strand = Plus / Minus
Query: 144 agaacagaccgatctattgatgggtaagacgaatctgtaataagtgttttttatgatatc 203
|||||||||||||||||||||||||| ||||||||||||| | ||||| | ||||
Sbjct: 438 agaacagaccgatctattgatgggtatgacgaatctgtaaa-----tgttttacggtatc 384
Query: 204 cgacaagggtatatgtgtagatcaggctgaacccttgagcttcttggcgatgcctgcgaa 263
|| |||||||| ||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 383 tgagaagggtat--gtgcagatcaagcagaacccttgagcttcttggcgatgcctgcgaa 326
Query: 264 gtacttcccctggtggaaggcgtgctccagctccacctcgctcggccacctcgagccgtc 323
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 325 gtacttcccctggtgaaaggcgtgctcgagctccacctcactcggccacctcgagccgtc 266
Query: 324 ggcggcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacag 383
||| ||||||||||| || || ||||||||||| ||||||||||||||||||||||||||
Sbjct: 265 ggcagcgaacgtgccagcaccataggggctgccaccctgaacctggtccatgccgaacag 206
Query: 384 cttggcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggt 443
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 205 cttggcgccgaaggtgtagcccacaggcacaaacaccatgccgtggtgtgtcaactgggt 146
Query: 444 gatcgctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgcagaagaagac 503
||||| ||||||| ||| ||||| ||| |||||||||||| |||||||| ||||||||
Sbjct: 145 aatcgcggtcaacggtgtagtctcttgggcaccaccctgggttccagtgctgaagaagat 86
Query: 504 gccggcaggcttgccggcaaggctctgctccctccagagcccaccagtggcatcgaagaa 563
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 85 gccggcaggcttgccagcaaggctctgctccctccagagcccaccagtagcatcgaagaa 26
Query: 564 cgccttcatctgcgctgccatcatt 588
||||||||| |||||||||||||||
Sbjct: 25 cgccttcatttgcgctgccatcatt 1
>gb|BM325874.1|BM325874 PIC1_53_H06.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 460
Score = 563 bits (284), Expect = e-158
Identities = 389/423 (91%), Gaps = 7/423 (1%)
Strand = Plus / Minus
Query: 475 ccaccctgggatccagtgcagaagaagacgccggcaggcttgccggcaaggctctgctcc 534
|||||||||| |||||||| |||||||| ||||||||||||||| |||||||||||||||
Sbjct: 460 ccaccctgggttccagtgctgaagaagatgccggcaggcttgccagcaaggctctgctcc 401
Query: 535 ctccagagcccaccagtggcatcgaagaacgccttcatctgcgctgccatcattccgaac 594
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 400 ctccagagcccaccagtagcatcgaagaacgccttcatctgcgctgccatcattccaaac 341
Query: 595 ctcgttgggaacccgaagaggattccgtcggcctctgcgagttcttgcggcgtgatgact 654
|| ||||| ||||||||||||||||| || || ||||| ||||| ||||| |||||||||
Sbjct: 340 cttgttggaaacccgaagaggattccatcagcttctgcaagttcatgcggtgtgatgact 281
Query: 655 ggcacgtcaggcttagggggtgcgcccatctttccaagcacttcctcagggagggtttca 714
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 280 ggcacatcaggcttagggggtgcgcccatctttccaagcacttcctcagggagagtttca 221
Query: 715 gggacctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctct 774
|||||||||||| ||||||| ||||||||||||| ||| ||||||||||||| |||||||
Sbjct: 220 gggacctgccatattttagcctcaacaccttcaatagatgaggcacctttcttgatctct 161
Query: 775 tcagctagtttgccaacatgtccatacatggaatagtacacgacgtagaccttaaccgcc 834
||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||
Sbjct: 160 tcagctagtttgccaacatgtccatacgtggagtagtacacgacgtagaccttgaccgcc 101
Query: 835 attggagagggctcggagtcggagttcctgtgaccgg-ggcagatctggcaactcctgcg 893
|||||||||||| |||||| |||||||||||| || |||||||| ||||||||||
Sbjct: 100 attggagagggc------tcggagctcctgtgaccggaggaagatctggaaactcctgcg 47
Query: 894 gcg 896
|||
Sbjct: 46 gcg 44
>gb|BM330587.1|BM330587 PIC1_53_H07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 508
Score = 462 bits (233), Expect = e-128
Identities = 356/396 (89%), Gaps = 7/396 (1%)
Strand = Plus / Minus
Query: 144 agaacagaccgatctattgatgggtaagacgaatctgtaataagtgttttttatgatatc 203
|||||||||||||||||||||||||| ||| ||||||||| | ||||| | ||||
Sbjct: 389 agaacagaccgatctattgatgggtatgaccaatctgtaaa-----tgttttacggtatc 335
Query: 204 cgacaagggtatatgtgtagatcaggctgaacccttgagcttcttggcgatgcctgcgaa 263
|| |||||||| ||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 334 tgagaagggtat--gtgcagatcaagcagaacccttgagcttcttggcgatgcctgcgaa 277
Query: 264 gtacttcccctggtggaaggcgtgctccagctccacctcgctcggccacctcgagccgtc 323
||||||||||||| | ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 276 gtacttcccctggagaaaggcgtgctcgagctccacctcactcggccacctcgagccgtc 217
Query: 324 ggcggcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacag 383
||| ||||||||||| || || ||||||||||| ||||||||||||||||||||||||||
Sbjct: 216 ggcagcgaacgtgccagcaccataggggctgccaccctgaacctggtccatgccgaacag 157
Query: 384 cttggcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggt 443
||||||||| |||||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct: 156 cttggcgcctaaggtgtagcccacaggcacaaacaccatgccgcggtgtgtcaactgggt 97
Query: 444 gatcgctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgcagaagaagac 503
||||| ||||||| ||| ||||| |||||||||||||||| |||||||| ||||||||
Sbjct: 96 aatcgcggtcaacggtgtagtctcttggccaccaccctgggttccagtgctgaagaagat 37
Query: 504 gccggcaggcttgccggcaaggctctgctccctcca 539
||||||||||||||| ||||||||||||||||||||
Sbjct: 36 gccggcaggcttgccagcaaggctctgctccctcca 1
Score = 54.0 bits (27), Expect = 2e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 69 tccaactccagattacaacaaagtcaccgtagcatgaaa 107
||||||||||||||||||| |||||||| |||||||||
Sbjct: 466 tccaactccagattacaaccaagtcaccagagcatgaaa 428
>gb|BM330586.1|BM330586 PIC1_53_H06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 461
Score = 418 bits (211), Expect = e-115
Identities = 313/346 (90%), Gaps = 7/346 (2%)
Strand = Plus / Minus
Query: 144 agaacagaccgatctattgatgggtaagacgaatctgtaataagtgttttttatgatatc 203
|||||||||||||||||||||||||| ||||||||||||| | ||||| | ||||
Sbjct: 341 agaacagaccgatctattgatgggtatgacgaatctgtaaa-----tgttttacggtatc 287
Query: 204 cgacaagggtatatgtgtagatcaggctgaacccttgagcttcttggcgatgcctgcgaa 263
|| |||||||| ||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 286 tgagaagggtat--gtgcagatcaagcagaacccttgagcttcttggcgatgcctgcgaa 229
Query: 264 gtacttcccctggtggaaggcgtgctccagctccacctcgctcggccacctcgagccgtc 323
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 228 gtacttcccctggtgaaaggcgtgctcgagctccacctcactcggccacctcgagccgtc 169
Query: 324 ggcggcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacag 383
||| ||||||||||| || || ||||||||||| ||||||||||||||||||||||||||
Sbjct: 168 ggcagcgaacgtgccagcaccataggggctgccaccctgaacctggtccatgccgaacag 109
Query: 384 cttggcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggt 443
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 108 cttggcgccgaaggtgtagcccacaggcacaaacaccatgccgtggtgtgtcaactgggt 49
Query: 444 gatcgctgtcaacgctgtcgtctcctggccaccaccctgggatcca 489
||||| ||||||| ||| ||||| |||||||||||||||| ||||
Sbjct: 48 aatcgcggtcaacggtgtagtctcttggccaccaccctgggttcca 3
Score = 54.0 bits (27), Expect = 2e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 69 tccaactccagattacaacaaagtcaccgtagcatgaaa 107
||||||||||||||||||| |||||||| |||||||||
Sbjct: 418 tccaactccagattacaaccaagtcaccagagcatgaaa 380
>gb|CF769697.1|CF769697 DSBF1_3_F04.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_3_F04_A010 5', mRNA sequence
Length = 466
Score = 387 bits (195), Expect = e-105
Identities = 285/314 (90%), Gaps = 7/314 (2%)
Strand = Plus / Plus
Query: 144 agaacagaccgatctattgatgggtaagacgaatctgtaataagtgttttttatgatatc 203
|||||||||||||||||||||||||| ||||||||||||| | ||||| | ||||
Sbjct: 160 agaacagaccgatctattgatgggtatgacgaatctgtaaa-----tgttttacggtatc 214
Query: 204 cgacaagggtatatgtgtagatcaggctgaacccttgagcttcttggcgatgcctgcgaa 263
|| |||||||| ||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 215 tgagaagggtat--gtgcagatcaagcagaacccttgagcttcttggcgatgcctgcgaa 272
Query: 264 gtacttcccctggtggaaggcgtgctccagctccacctcgctcggccacctcgagccgtc 323
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 273 gtacttcccctggtgaaaggcgtgctcgagctccacctcactcggccacctcgagccgtc 332
Query: 324 ggcggcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacag 383
||| ||||||||||| || || ||||||||||| ||||||||||||||||||||||||||
Sbjct: 333 ggcagcgaacgtgccagcaccataggggctgccaccctgaacctggtccatgccgaacag 392
Query: 384 cttggcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggt 443
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 393 cttggcgccgaaggtgtagcccacagggacgaacaccatgccgtggtgtgtcaactgggt 452
Query: 444 gatcgctgtcaacg 457
||||| |||||||
Sbjct: 453 aatcgcggtcaacg 466
Score = 54.0 bits (27), Expect = 2e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 69 tccaactccagattacaacaaagtcaccgtagcatgaaa 107
||||||||||||||||||| |||||||| |||||||||
Sbjct: 83 tccaactccagattacaaccaagtcaccagagcatgaaa 121
>gb|CW052315.1|CW052315 104_292_10515512_114_30286 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515512, DNA
sequence
Length = 610
Score = 385 bits (194), Expect = e-105
Identities = 284/313 (90%), Gaps = 7/313 (2%)
Strand = Plus / Plus
Query: 144 agaacagaccgatctattgatgggtaagacgaatctgtaataagtgttttttatgatatc 203
|||||||||||||||||||||||||| ||||||||||||| | ||||| | ||||
Sbjct: 68 agaacagaccgatctattgatgggtatgacgaatctgtaaa-----tgttttacggtatc 122
Query: 204 cgacaagggtatatgtgtagatcaggctgaacccttgagcttcttggcgatgcctgcgaa 263
|| |||||||| ||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 123 tgagaagggtat--gtgcagatcaagcagaacccttgagcttcttggcgatgcctgcgaa 180
Query: 264 gtacttcccctggtggaaggcgtgctccagctccacctcgctcggccacctcgagccgtc 323
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 181 gtacttcccctggtgaaaggcgtgctcgagctccacctcactcggccacctcgagccgtc 240
Query: 324 ggcggcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacag 383
||| ||||||||||| || || ||||||||||| ||||||||||||||||||||||||||
Sbjct: 241 ggcagcgaacgtgccagcaccataggggctgccaccctgaacctggtccatgccgaacag 300
Query: 384 cttggcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggt 443
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 301 cttggcgccgaaggtgtagcccacaggcacaaacaccatgccgtggtgtgtcaactgggt 360
Query: 444 gatcgctgtcaac 456
||||| ||||||
Sbjct: 361 aatcgcggtcaac 373
Score = 198 bits (100), Expect = 7e-049
Identities = 121/128 (94%)
Strand = Plus / Plus
Query: 463 gtctcctggccaccaccctgggatccagtgcagaagaagacgccggcaggcttgccggca 522
||||| |||||||||||||||| |||||||| |||||||| ||||||||||||||| |||
Sbjct: 479 gtctcttggccaccaccctgggttccagtgctgaagaagatgccggcaggcttgccagca 538
Query: 523 aggctctgctccctccagagcccaccagtggcatcgaagaacgccttcatctgcgctgcc 582
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 539 aggctctgctccctccagagcccaccagtagcatcgaagaacgccttcatttgcgctgcc 598
Query: 583 atcattcc 590
||||||||
Sbjct: 599 atcattcc 606
>gb|CW243361.1|CW243361 104_703_11219979_116_37571_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219979, DNA
sequence
Length = 676
Score = 385 bits (194), Expect = e-105
Identities = 284/313 (90%), Gaps = 7/313 (2%)
Strand = Plus / Plus
Query: 144 agaacagaccgatctattgatgggtaagacgaatctgtaataagtgttttttatgatatc 203
|||||||||||||||||||||||||| ||||||||||||| | ||||| | ||||
Sbjct: 305 agaacagaccgatctattgatgggtatgacgaatctgtaaa-----tgttttacggtatc 359
Query: 204 cgacaagggtatatgtgtagatcaggctgaacccttgagcttcttggcgatgcctgcgaa 263
|| |||||||| ||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 360 tgagaagggtat--gtgcagatcaagcagaacccttgagcttcttggcgatgcctgcgaa 417
Query: 264 gtacttcccctggtggaaggcgtgctccagctccacctcgctcggccacctcgagccgtc 323
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 418 gtacttcccctggtgaaaggcgtgctcgagctccacctcactcggccacctcgagccgtc 477
Query: 324 ggcggcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacag 383
||| ||||||||||| || || ||||||||||| ||||||||||||||||||||||||||
Sbjct: 478 ggcagcgaacgtgccagcaccataggggctgccaccctgaacctggtccatgccgaacag 537
Query: 384 cttggcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggt 443
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 538 cttggcgccgaaggtgtagcccacaggcacaaacaccatgccgtggtgtgtcaactgggt 597
Query: 444 gatcgctgtcaac 456
||||| ||||||
Sbjct: 598 aatcgcggtcaac 610
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/87 (85%), Gaps = 4/87 (4%)
Strand = Plus / Plus
Query: 24 cgtttacttgagcaaatcatcgaaatttatgcgaaacaa---cgatattccaactccaga 80
|||||| |||||||| ||||||||||||| |||| | || | ||| ||||||||||||
Sbjct: 181 cgtttagttgagcaa-tcatcgaaatttaagcgacagaaacacaatagtccaactccaga 239
Query: 81 ttacaacaaagtcaccgtagcatgaaa 107
||||||| |||||||| |||||||||
Sbjct: 240 ttacaaccaagtcaccagagcatgaaa 266
>gb|CW052317.1|CW052317 104_292_10515512_115_30287 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515512, DNA
sequence
Length = 681
Score = 381 bits (192), Expect = e-104
Identities = 242/259 (93%)
Strand = Plus / Minus
Query: 463 gtctcctggccaccaccctgggatccagtgcagaagaagacgccggcaggcttgccggca 522
||||| |||||||||||||||| |||||||| |||||||| ||||||||||||||| |||
Sbjct: 650 gtctcttggccaccaccctgggttccagtgctgaagaagatgccggcaggcttgccagca 591
Query: 523 aggctctgctccctccagagcccaccagtggcatcgaagaacgccttcatctgcgctgcc 582
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 590 aggctctgctccctccagagcccaccagtagcatcgaagaacgccttcatntgcgctgcc 531
Query: 583 atcattccgaacctcgttgggaacccgaagaggattccgtcggcctctgcgagttcttgc 642
|||||||| ||||| ||||| ||||||||||||||||| || || ||||| |||||||||
Sbjct: 530 atcattccaaaccttgttggaaacccgaagaggattccatcagcttctgcaagttcttgc 471
Query: 643 ggcgtgatgactggcacgtcaggcttagggggtgcgcccatctttccaagcacttcctca 702
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ggtgtgatgactggcacatcaggcttagggggtgcgcccatctttccaagcacttcctca 411
Query: 703 gggagggtttcagggacct 721
||||| |||||||||||||
Sbjct: 410 gggagagtttcagggacct 392
Score = 135 bits (68), Expect = 8e-030
Identities = 89/96 (92%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| ||||||| ||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct: 248 acctgccatattttagcctcaacaccttcaatagatgaggcacctttcttgatctcttca 189
Query: 778 gctagtttgccaacatgtccatacatggaatagtac 813
|||||||||||||||||||||||| |||| ||||||
Sbjct: 188 gctagtttgccaacatgtccatacgtggagtagtac 153
>gb|CL196725.1|CL196725 104_423_10943246_114_32326_061 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943246, DNA
sequence
Length = 718
Score = 379 bits (191), Expect = e-103
Identities = 242/259 (93%)
Strand = Plus / Minus
Query: 463 gtctcctggccaccaccctgggatccagtgcagaagaagacgccggcaggcttgccggca 522
||||| |||||||||||||||| |||||||| |||||||| ||||||||||||||| |||
Sbjct: 481 gtctcttggccaccaccctgggttccagtgctgaagaagatgccggcaggcttgccagca 422
Query: 523 aggctctgctccctccagagcccaccagtggcatcgaagaacgccttcatctgcgctgcc 582
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 421 aggctctgctccctccagagcccaccagtagcatcgaagaacgccttcatttgcgctgcc 362
Query: 583 atcattccgaacctcgttgggaacccgaagaggattccgtcggcctctgcgagttcttgc 642
|||||||| ||||| ||||| ||||||||||||||||| || || ||||| |||||||||
Sbjct: 361 atcattccaaaccttgttggaaacccgaagaggattccatcagcttctgcaagttcttgc 302
Query: 643 ggcgtgatgactggcacgtcaggcttagggggtgcgcccatctttccaagcacttcctca 702
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggtgtgatgactggcacatcaggcttagggggtgcgcccatctttccaagcacttcctca 242
Query: 703 gggagggtttcagggacct 721
||||| |||||||||||||
Sbjct: 241 gggagagtttcagggacct 223
Score = 192 bits (97), Expect = 4e-047
Identities = 121/129 (93%)
Strand = Plus / Minus
Query: 328 gcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccgaacagcttg 387
||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 715 gcgaacgtgccagcaccataggggctgccaccctgaacctggtccatgccgaacagcttg 656
Query: 388 gcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggtgatc 447
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct: 655 gcgccgaaggtgtagcccacaggcacaaacaccatgccgtggtgtgtcaactgggtaatc 596
Query: 448 gctgtcaac 456
|| ||||||
Sbjct: 595 gcggtcaac 587
Score = 117 bits (59), Expect = 2e-024
Identities = 74/79 (93%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| ||||||| ||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct: 79 acctgccatattttagcctcaacaccttcaatagatgaggcacctttcttgatctcttca 20
Query: 778 gctagtttgccaacatgtc 796
|||||||||||||||||||
Sbjct: 19 gctagtttgccaacatgtc 1
>gb|CN129474.1|CN129474 RHOH1_35_D06.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_35_D06_A002 5', mRNA sequence
Length = 799
Score = 355 bits (179), Expect = 5e-096
Identities = 500/607 (82%)
Strand = Plus / Minus
Query: 235 cccttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagc 294
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct: 730 cccttgagcttcttggcgatgccggcgaagtacttgccctggtgaaaggcgtgctccagc 671
Query: 295 tccacctcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctg 354
|||| ||| ||||||||| ||| ||||| ||||||||||||| |||||||| | |||
Sbjct: 670 tccaactccgtcggccaccgcgacccgtccccggcgaacgtgcccgcgccgtacgcactg 611
Query: 355 ccgccctgaacctggtccatgccgaacagcttggcgccgaaggtgtagcccacaggcacg 414
||||| || || |||||| | || | ||||||||||| ||||| ||||| ||||||
Sbjct: 610 ccgccgtgcacgctctccatgtcaaatattttggcgccgaacgtgtaccccaccggcacg 551
Query: 415 aacaccatgccgtggtgcgtcaactgggtgatcgctgtcaacgctgtcgtctcctggcca 474
|||||||| ||||||||||||| ||| || | ||| |||| || ||| |||||||||||
Sbjct: 550 aacaccatcccgtggtgcgtcagctgcgtcaccgccgtcagcggtgtggtctcctggccg 491
Query: 475 ccaccctgggatccagtgcagaagaagacgccggcaggcttgccggcaaggctctgctcc 534
|| ||||||| ||||||| |||||||| ||| || ||||||||||| ||||||||||||
Sbjct: 490 ccgccctgggtgccagtgctgaagaagaggccagcgggcttgccggccaggctctgctcc 431
Query: 535 ctccagagcccaccagtggcatcgaagaacgccttcatctgcgctgccatcattccgaac 594
| ||| ||||| || ||||| || ||||| ||||||||||| | |||||||| ||||||
Sbjct: 430 cgccacagcccgccggtggcgtcaaagaaggccttcatctgtgacgccatcatgccgaac 371
Query: 595 ctcgttgggaacccgaagaggattccgtcggcctctgcgagttcttgcggcgtgatgact 654
| || || |||||||||||||| || |||||||| ||||| || |||||||||||||
Sbjct: 370 cgtgtgggaaacccgaagaggatgccatcggcctcagcgagctcctgcggcgtgatgatc 311
Query: 655 ggcacgtcaggcttagggggtgcgcccatctttccaagcacttcctcagggagggtttca 714
|| ||||| | ||| || || || |||||||| || || || ||||| | || ||||
Sbjct: 310 ggtacgtcggtcttgggtggcgcacccatcttgccgaggacctcctcggatagaatttct 251
Query: 715 gggacctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctct 774
|||||||||||| |||| | || || |||||||| |||| |||||||||| ||||||
Sbjct: 250 gggacctgccatattttgacctccacgccttcaactgacgcagcacctttcttgatctcc 191
Query: 775 tcagctagtttgccaacatgtccatacatggaatagtacacgacgtagaccttaaccgcc 834
|||||||| ||| ||||||| || || |||| || |||||||||||| ||| ||||||
Sbjct: 190 tcagctagcttggcaacatgcccgtaggtggagtaaaacacgacgtagatcttgaccgcc 131
Query: 835 attggag 841
|||||||
Sbjct: 130 attggag 124
>gb|CW243362.1|CW243362 104_703_11219979_148_37572_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219979, DNA
sequence
Length = 683
Score = 345 bits (174), Expect = 5e-093
Identities = 219/234 (93%)
Strand = Plus / Minus
Query: 488 cagtgcagaagaagacgccggcaggcttgccggcaaggctctgctccctccagagcccac 547
|||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 683 cagtgctgaagaagatgccggcaggcttgccagcaaggctctgctccctccagagcccac 624
Query: 548 cagtggcatcgaagaacgccttcatctgcgctgccatcattccgaacctcgttgggaacc 607
|||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||
Sbjct: 623 cagtagcatcgaagaacgccttcatttgcgctgccatcattccaaaccttgttggaaacc 564
Query: 608 cgaagaggattccgtcggcctctgcgagttcttgcggcgtgatgactggcacgtcaggct 667
||||||||||||| || || ||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 563 cgaagaggattccatcagcttctgcaagttcttgcggtgtgatgactggcacatcaggct 504
Query: 668 tagggggtgcgcccatctttccaagcacttcctcagggagggtttcagggacct 721
|||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 503 tagggggtgcgcccatctttccaagcacttcctcagggagagtttcagggacct 450
Score = 135 bits (68), Expect = 8e-030
Identities = 89/96 (92%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| ||||||| ||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct: 306 acctgccatattttagcctcaacaccttcaatagatgaggcacctttcttgatctcttca 247
Query: 778 gctagtttgccaacatgtccatacatggaatagtac 813
|||||||||||||||||||||||| |||| ||||||
Sbjct: 246 gctagtttgccaacatgtccatacgtggagtagtac 211
>gb|CF433699.1|CF433699 NIT1_28_G06.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_28_G06_A002 5', mRNA sequence
Length = 752
Score = 341 bits (172), Expect = 7e-092
Identities = 496/604 (82%)
Strand = Plus / Minus
Query: 238 ttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagctcc 297
|||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct: 704 ttgagcttcttggcgatgccggcgaagtacttgccctggtgaaaggcgtgctccagctcc 645
Query: 298 acctcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctgccg 357
| ||| ||||||||| ||| ||||| ||||||||||||| |||||||| | ||||||
Sbjct: 644 aactccgtcggccaccgcgacccgtccccggcgaacgtgcccgcgccgtacgcactgccg 585
Query: 358 ccctgaacctggtccatgccgaacagcttggcgccgaaggtgtagcccacaggcacgaac 417
|| || || |||||| | || | ||||||||||| ||||| ||||| |||||||||
Sbjct: 584 ccgtgcacgctctccatgtcaaatattttggcgccgaacgtgtaccccaccggcacgaac 525
Query: 418 accatgccgtggtgcgtcaactgggtgatcgctgtcaacgctgtcgtctcctggccacca 477
||||| ||||||||||||| ||| || | ||| |||| || ||| ||||||||||| ||
Sbjct: 524 accatcccgtggtgcgtcagctgcgtcaccgccgtcagcggtgtggtctcctggccgccg 465
Query: 478 ccctgggatccagtgcagaagaagacgccggcaggcttgccggcaaggctctgctccctc 537
||||||| ||||||| |||||||| ||| || ||||||||||| ||||||||||||| |
Sbjct: 464 ccctgggtgccagtgctgaagaagaggccagcgggcttgccggccaggctctgctcccgc 405
Query: 538 cagagcccaccagtggcatcgaagaacgccttcatctgcgctgccatcattccgaacctc 597
|| ||||| || ||||| || ||||| ||||||||||| | |||||||| |||||||
Sbjct: 404 cacagcccgccggtggcgtcaaagaaggccttcatctgtgacgccatcatgccgaaccgt 345
Query: 598 gttgggaacccgaagaggattccgtcggcctctgcgagttcttgcggcgtgatgactggc 657
|| || ||||||||||||| || |||||||| ||||| || ||||||||||||| ||
Sbjct: 344 gtgggaaacccgaagaggacgccatcggcctcagcgagctcctgcggcgtgatgatcggt 285
Query: 658 acgtcaggcttagggggtgcgcccatctttccaagcacttcctcagggagggtttcaggg 717
||||| | ||| || || || |||||||| || || || ||||| | || |||| |||
Sbjct: 284 acgtcggtcttgggtggcgcacccatcttgccgaggacctcctcggatagaatttctggg 225
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| |||| | || || |||||||| |||| |||||||||| |||||| |||
Sbjct: 224 acctgccatattttgacctccacgccttcaactgacgcagcacctttcttgatctcctca 165
Query: 778 gctagtttgccaacatgtccatacatggaatagtacacgacgtagaccttaaccgccatt 837
||||| ||| ||||||| || || |||| || |||||||||||| ||| |||||||||
Sbjct: 164 gctagcttggcaacatgcccgtaggtggagtaaaacacgacgtagatcttgaccgccatt 105
Query: 838 ggag 841
||||
Sbjct: 104 ggag 101
>gb|CF488389.1|CF488389 POL1_49_D06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_49_D06_A002 5', mRNA sequence
Length = 672
Score = 313 bits (158), Expect = 2e-083
Identities = 476/582 (81%)
Strand = Plus / Minus
Query: 260 cgaagtacttcccctggtggaaggcgtgctccagctccacctcgctcggccacctcgagc 319
|||||||||| |||||||| ||||||||||||||||||| ||| ||||||||| ||| |
Sbjct: 672 cgaagtacttgccctggtgaaaggcgtgctccagctccaactccgtcggccaccgcgacc 613
Query: 320 cgtcggcggcgaacgtgccggcgccgtaggggctgccgccctgaacctggtccatgccga 379
|||| ||||||||||||| |||||||| | |||||||| || || |||||| | |
Sbjct: 612 cgtccccggcgaacgtgcccgcgccgtacgcactgccgccgtgcacgctctccatgtcaa 553
Query: 380 acagcttggcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaact 439
| | ||||||||||| ||||| ||||| |||||||||||||| ||||||||||||| ||
Sbjct: 552 atattttggcgccgaacgtgtaccccaccggcacgaacaccatcccgtggtgcgtcagct 493
Query: 440 gggtgatcgctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgcagaaga 499
| || | ||| |||| || ||| ||||||||||| || ||||||| ||||||| |||||
Sbjct: 492 gcgtcaccgccgtcagcggtgtggtctcctggccgccgccctgggtgccagtgctgaaga 433
Query: 500 agacgccggcaggcttgccggcaaggctctgctccctccagagcccaccagtggcatcga 559
||| ||| || ||||||||||| ||||||||||||| ||| ||||| || ||||| || |
Sbjct: 432 agaggccagcgggcttgccggccaggctctgctcccgccacagcccgccggtggcgtcaa 373
Query: 560 agaacgccttcatctgcgctgccatcattccgaacctcgttgggaacccgaagaggattc 619
|||| ||||||||||| | |||||||| ||||||| || || |||||||||||||| |
Sbjct: 372 agaaggccttcatctgtgacgccatcatgccgaaccgtgtgggaaacccgaagaggatgc 313
Query: 620 cgtcggcctctgcgagttcttgcggcgtgatgactggcacgtcaggcttagggggtgcgc 679
| |||||||| ||||| || ||||||||||||| || ||||| | ||| || || || |
Sbjct: 312 catcggcctcagcgagctcctgcggcgtgatgatcggtacgtcggtcttgggtggcgcac 253
Query: 680 ccatctttccaagcacttcctcagggagggtttcagggacctgccatgttttagcttcaa 739
||||||| || || || ||||| | || |||| |||||||||||| |||| | || |
Sbjct: 252 ccatcttgccgaggacctcctcggatagaatttctgggacctgccatattttgacctcca 193
Query: 740 caccttcaacagacgaggcacctttctggatctcttcagctagtttgccaacatgtccat 799
| |||||||| |||| |||||||||| |||||| |||||||| ||| ||||||| || |
Sbjct: 192 cgccttcaactgacgcagcacctttcttgatctcctcagctagcttggcaacatgcccgt 133
Query: 800 acatggaatagtacacgacgtagaccttaaccgccattggag 841
| |||| || |||||||||||| ||| |||||||||||||
Sbjct: 132 aggtggagtaaaacacgacgtagatcttgaccgccattggag 91
>gb|CN129384.1|CN129384 RHOH1_35_D06.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_35_D06_A002 3', mRNA sequence
Length = 775
Score = 289 bits (146), Expect = 2e-076
Identities = 350/418 (83%)
Strand = Plus / Minus
Query: 235 cccttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagc 294
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct: 519 cccttgagcttcttggcgatgccggcgaagtacttgccctggtgaaaggcgtgctccagc 460
Query: 295 tccacctcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctg 354
|||| ||| ||||||||| ||| ||||| ||||||||||||| |||||||| | |||
Sbjct: 459 tccaactccgtcggccaccgcgacccgtccccggcgaacgtgcccgcgccgtacgcactg 400
Query: 355 ccgccctgaacctggtccatgccgaacagcttggcgccgaaggtgtagcccacaggcacg 414
||||| || || |||||| | || | ||||||||||| ||||| ||||| ||||||
Sbjct: 399 ccgccgtgcacgctctccatgtcaaatattttggcgccgaacgtgtaccccaccggcacg 340
Query: 415 aacaccatgccgtggtgcgtcaactgggtgatcgctgtcaacgctgtcgtctcctggcca 474
|||||||| ||||||||||||| ||| || | ||| |||| || ||| |||||||||||
Sbjct: 339 aacaccatcccgtggtgcgtcagctgcgtcaccgccgtcagcggtgtggtctcctggccg 280
Query: 475 ccaccctgggatccagtgcagaagaagacgccggcaggcttgccggcaaggctctgctcc 534
|| ||||||| ||||||| ||| || | ||| || ||||||||||| ||||||||||||
Sbjct: 279 ccgccctgggtgccagtgctgaaaaaaaggccagcgggcttgccggccaggctctgctcc 220
Query: 535 ctccagagcccaccagtggcatcgaagaacgccttcatctgcgctgccatcattccgaac 594
| ||| ||||| || ||||| || ||||| ||||||||||| | |||||||| ||||||
Sbjct: 219 cgccacagcccgccggtggcgtcaaagaaggccttcatctgtgacgccatcatgccgaac 160
Query: 595 ctcgttgggaacccgaagaggattccgtcggcctctgcgagttcttgcggcgtgatga 652
| || || |||||||||||||| || |||||||| ||||| || |||||||||||||
Sbjct: 159 cgtgtgggaaacccgaagaggatgccatcggcctcagcgagctcctgcggcgtgatga 102
>gb|CN136882.1|CN136882 OX1_53_H01.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_53_H01_A002 5', mRNA sequence
Length = 677
Score = 289 bits (146), Expect = 2e-076
Identities = 458/562 (81%)
Strand = Plus / Minus
Query: 280 aaggcgtgctccagctccacctcgctcggccacctcgagccgtcggcggcgaacgtgccg 339
||||||||||||||||||| ||| ||||||||| ||| ||||| |||||||||||||
Sbjct: 673 aaggcgtgctccagctccaactccgtcggccaccgcgacccgtccccggcgaacgtgccc 614
Query: 340 gcgccgtaggggctgccgccctgaacctggtccatgccgaacagcttggcgccgaaggtg 399
|||||||| | |||||||| || || |||||| | || | ||||||||||| |||
Sbjct: 613 gcgccgtacgcactgccgccgtgcacgctctccatgtcaaatattttggcgccgaacgtg 554
Query: 400 tagcccacaggcacgaacaccatgccgtggtgcgtcaactgggtgatcgctgtcaacgct 459
|| ||||| |||||||||||||| ||||||||||||| ||| || | ||| |||| || |
Sbjct: 553 taccccaccggcacgaacaccatcccgtggtgcgtcagctgcgtcaccgccgtcagcggt 494
Query: 460 gtcgtctcctggccaccaccctgggatccagtgcagaagaagacgccggcaggcttgccg 519
|| ||||||||||| || ||||||| ||||||| |||||||| ||| || |||||||||
Sbjct: 493 gtggtctcctggccgccgccctgggtgccagtgctgaagaagaggccagcgggcttgccg 434
Query: 520 gcaaggctctgctccctccagagcccaccagtggcatcgaagaacgccttcatctgcgct 579
|| ||||||||||||| ||| ||||| || ||||| || ||||| ||||||||||| |
Sbjct: 433 gccaggctctgctcccgccacagcccgccggtggcgtcaaagaaggccttcatctgtgac 374
Query: 580 gccatcattccgaacctcgttgggaacccgaagaggattccgtcggcctctgcgagttct 639
|||||||| ||||||| || || |||||||||||||| || |||||||| ||||| ||
Sbjct: 373 gccatcatgccgaaccgtgtgggaaacccgaagaggatgccatcggcctcagcgagctcc 314
Query: 640 tgcggcgtgatgactggcacgtcaggcttagggggtgcgcccatctttccaagcacttcc 699
||||||||||||| || ||||| | ||| || || || |||||||| || || || |||
Sbjct: 313 tgcggcgtgatgatcggtacgtcggtcttgggtggcgcacccatcttgccgaggacctcc 254
Query: 700 tcagggagggtttcagggacctgccatgttttagcttcaacaccttcaacagacgaggca 759
|| | || |||| |||||||||||| |||| | || || |||||||| |||| |||
Sbjct: 253 tcggatagaatttctgggacctgccatattttgacctccacgccttcaactgacgcagca 194
Query: 760 cctttctggatctcttcagctagtttgccaacatgtccatacatggaatagtacacgacg 819
||||||| |||||| |||||||| ||| ||||||| || || |||| || ||||||||
Sbjct: 193 cctttcttgatctcctcagctagcttggcaacatgcccgtaggtggagtaaaacacgacg 134
Query: 820 tagaccttaaccgccattggag 841
|||| ||| |||||||||||||
Sbjct: 133 tagatcttgaccgccattggag 112
>gb|CN136795.1|CN136795 OX1_53_H01.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_53_H01_A002 3', mRNA sequence
Length = 720
Score = 274 bits (138), Expect = 1e-071
Identities = 348/418 (83%)
Strand = Plus / Minus
Query: 235 cccttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagc 294
||||||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||
Sbjct: 432 cccttgagcttcttggcgatgccggcgaagtacttgccctggtgaaaggggtgctccagc 373
Query: 295 tccacctcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctg 354
|||| ||| ||||||||| ||| ||||| ||| ||||||||| |||||||| | |||
Sbjct: 372 tccaactccgtcggccaccgcgacccgtccccggggaacgtgcccgcgccgtacgcactg 313
Query: 355 ccgccctgaacctggtccatgccgaacagcttggcgccgaaggtgtagcccacaggcacg 414
||||| || || |||||| | || | ||||||||||| ||||| ||||| ||||||
Sbjct: 312 ccgccgtgcacgctctccatgtcaaatattttggcgccgaaagtgtaccccaccggcacg 253
Query: 415 aacaccatgccgtggtgcgtcaactgggtgatcgctgtcaacgctgtcgtctcctggcca 474
|||||||| ||||||||||||| ||| || | ||| |||| || ||| |||||||||||
Sbjct: 252 aacaccatcccgtggtgcgtcagctgcgtcaccgccgtcagcggtgtggtctcctggccg 193
Query: 475 ccaccctgggatccagtgcagaagaagacgccggcaggcttgccggcaaggctctgctcc 534
|| ||||||| ||||||| |||||||| ||| || ||||||||||| ||||||||||||
Sbjct: 192 ccgccctgggtgccagtgctgaagaagaggccagcgggcttgccggccaggctctgctcc 133
Query: 535 ctccagagcccaccagtggcatcgaagaacgccttcatctgcgctgccatcattccgaac 594
| ||| | ||| || ||||| || ||||| ||||||||||| | |||||||| ||||||
Sbjct: 132 cgccacaacccgccggtggcgtcaaagaaggccttcatctgtgacgccatcatgccgaac 73
Query: 595 ctcgttgggaacccgaagaggattccgtcggcctctgcgagttcttgcggcgtgatga 652
| || || |||||||| ||||| || |||||||| ||||| || |||||||||||||
Sbjct: 72 cgtgtgggaaacccgaataggatgccatcggcctcagcgagctcctgcggcgtgatga 15
>gb|CW052314.1|CW052314 104_292_10515512_114_30189 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515512, DNA
sequence
Length = 305
Score = 258 bits (130), Expect = 8e-067
Identities = 218/245 (88%), Gaps = 8/245 (3%)
Strand = Plus / Plus
Query: 144 agaacagaccgatctattgatgggtaagacgaatctgtaataagtgttttttatgatatc 203
|||||||||||||||||||||||||| ||||||||||||| | ||||| | ||||
Sbjct: 68 agaacagaccgatctattgatgggtatgacgaatctgtaaa-----tgttttacggtatc 122
Query: 204 cgacaagggtatatgtgtagatcaggctgaacccttgagcttcttggcgatgcctgcgaa 263
|| |||||||| ||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 123 tgagaagggtat--gtgcagatcaagcagaacccttgagcttcttggcgatgcctgcgaa 180
Query: 264 gtacttcccctggtggaaggcgtgctccagctccacctcgctcggccacctcgagccgtc 323
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 181 gtacttcccctggtgaaaggcgtgctcgagctccacctcactcggccacctcgagccgtc 240
Query: 324 ggcggcgaacgtgccggcgccgtaggggctgcc-gccctgaacctggtccatgccgaaca 382
||| ||||||||||| || || ||||||||||| |||||||||||||||||||| ||||
Sbjct: 241 ggcagcgaacgtgccagcaccataggggctgccacccctgaacctggtccatgcccaaca 300
Query: 383 gcttg 387
|||||
Sbjct: 301 gcttg 305
>gb|CF485453.1|CF485453 POL1_31_D05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_31_D05_A002 5', mRNA sequence
Length = 608
Score = 256 bits (129), Expect = 3e-066
Identities = 375/457 (82%)
Strand = Plus / Minus
Query: 385 ttggcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggtg 444
||||||||||| ||||| ||||| |||||||||||||| ||||||||||||| ||| ||
Sbjct: 589 ttggcgccgaacgtgtaccccaccggcacgaacaccatcccgtggtgcgtcagctgcgtc 530
Query: 445 atcgctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgcagaagaagacg 504
| ||| |||| || ||| ||||||||||| || ||||||| ||||||| |||||||| |
Sbjct: 529 accgccgtcagcggtgtggtctcctggccgccgccctgggtgccagtgctgaagaagagg 470
Query: 505 ccggcaggcttgccggcaaggctctgctccctccagagcccaccagtggcatcgaagaac 564
|| || ||||||||||| ||||||||||||| ||| ||||| || ||||| || |||||
Sbjct: 469 ccagcgggcttgccggccaggctctgctcccgccacagcccgccggtggcgtcaaagaag 410
Query: 565 gccttcatctgcgctgccatcattccgaacctcgttgggaacccgaagaggattccgtcg 624
||||||||||| | |||||||| ||||||| || || |||||||||||||| || |||
Sbjct: 409 gccttcatctgtgacgccatcatgccgaaccgtgtgggaaacccgaagaggatgccatcg 350
Query: 625 gcctctgcgagttcttgcggcgtgatgactggcacgtcaggcttagggggtgcgcccatc 684
||||| ||||| || ||||||||||||| || ||||| | ||| || || || ||||||
Sbjct: 349 gcctcagcgagctcctgcggcgtgatgatcggtacgtcggtcttgggtggcgcacccatc 290
Query: 685 tttccaagcacttcctcagggagggtttcagggacctgccatgttttagcttcaacacct 744
|| || || || ||||| | || |||| |||||||||||| |||| | || || |||
Sbjct: 289 ttgccgaggacctcctcggatagaatttctgggacctgccatattttgacctccacgcct 230
Query: 745 tcaacagacgaggcacctttctggatctcttcagctagtttgccaacatgtccatacatg 804
||||| |||| |||||||||| |||||| |||||||| ||| ||||||| || || ||
Sbjct: 229 tcaactgacgcagcacctttcttgatctcctcagctagcttggcaacatgcccgtaggtg 170
Query: 805 gaatagtacacgacgtagaccttaaccgccattggag 841
|| || |||||||||||| ||| |||||||||||||
Sbjct: 169 gagtaaaacacgacgtagatcttgaccgccattggag 133
>gb|BE594574.1|BE594574 PI1_34_H06.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 576
Score = 254 bits (128), Expect = 1e-065
Identities = 374/456 (82%)
Strand = Plus / Minus
Query: 386 tggcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggtga 445
|||||||||| ||||| ||||| |||||||||||||| ||||||||||||| ||| || |
Sbjct: 576 tggcgccgaacgtgtaccccaccggcacgaacaccatcccgtggtgcgtcagctgcgtca 517
Query: 446 tcgctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgcagaagaagacgc 505
||| |||| || ||| ||||||||||| || ||||||| ||||||| |||||||| ||
Sbjct: 516 ccgccgtcagcggtgtggtctcctggccgccgccctgggtgccagtgctgaagaagaggc 457
Query: 506 cggcaggcttgccggcaaggctctgctccctccagagcccaccagtggcatcgaagaacg 565
| || ||||||||||| ||||||||||||| ||| ||||| || ||||| || ||||| |
Sbjct: 456 cagcgggcttgccggccaggctctgctcccgccacagcccgccggtggcgtcaaagaagg 397
Query: 566 ccttcatctgcgctgccatcattccgaacctcgttgggaacccgaagaggattccgtcgg 625
|||||||||| | |||||||| ||||||| || || |||||||||||||| || ||||
Sbjct: 396 ccttcatctgtgacgccatcatgccgaaccgtgtgggaaacccgaagaggatgccatcgg 337
Query: 626 cctctgcgagttcttgcggcgtgatgactggcacgtcaggcttagggggtgcgcccatct 685
|||| ||||| || ||||||||||||| || ||||| | ||| || || || |||||||
Sbjct: 336 cctcagcgagctcctgcggcgtgatgatcggtacgtcggtcttgggtggcgcacccatct 277
Query: 686 ttccaagcacttcctcagggagggtttcagggacctgccatgttttagcttcaacacctt 745
| || || || ||||| | || |||| |||||||||||| |||| | || || ||||
Sbjct: 276 tgccgaggacctcctcggatagaatttctgggacctgccatattttgacctccacgcctt 217
Query: 746 caacagacgaggcacctttctggatctcttcagctagtttgccaacatgtccatacatgg 805
|||| |||| |||||||||| |||||| |||||||| ||| ||||||| || || |||
Sbjct: 216 caactgacgcagcacctttcttgatctcctcagctagcttggcaacatgcccgtaggtgg 157
Query: 806 aatagtacacgacgtagaccttaaccgccattggag 841
| || |||||||||||| ||| |||||||||||||
Sbjct: 156 agtaaaacacgacgtagatcttgaccgccattggag 121
>gb|CF433642.1|CF433642 NIT1_28_G06.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_28_G06_A002 3', mRNA sequence
Length = 607
Score = 232 bits (117), Expect = 5e-059
Identities = 255/301 (84%)
Strand = Plus / Minus
Query: 235 cccttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagc 294
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct: 306 cccttgagcttcttggcgatgccggcgaagtacttgccctggtgaaaggcgtgctccagc 247
Query: 295 tccacctcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctg 354
|||| ||| ||||||||| ||| ||||| ||||||||||||| |||||||| | |||
Sbjct: 246 tccaactccgtcggccaccgcgacccgtccccggcgaacgtgcccgcgccgtacgcactg 187
Query: 355 ccgccctgaacctggtccatgccgaacagcttggcgccgaaggtgtagcccacaggcacg 414
||||| || || |||||| | || | ||||||||||| ||||| ||||| ||||||
Sbjct: 186 ccgccgtgcacgctctccatgtcaaatattttggcgccgaacgtgtaccccaccggcacg 127
Query: 415 aacaccatgccgtggtgcgtcaactgggtgatcgctgtcaacgctgtcgtctcctggcca 474
|||||||| ||||||||||||| ||| || | ||| |||| || ||| |||||||||||
Sbjct: 126 aacaccatcccgtggtgcgtcagctgcgtcaccgccgtcagcggtgtggtctcctggccg 67
Query: 475 ccaccctgggatccagtgcagaagaagacgccggcaggcttgccggcaaggctctgctcc 534
|| ||||||| ||||||| |||||||| ||| || ||||||||||| ||||||||||||
Sbjct: 66 ccgccctgggtgccagtgctgaagaagaggccagcgggcttgccggccaggctctgctcc 7
Query: 535 c 535
|
Sbjct: 6 c 6
>gb|CF485141.1|CF485141 POL1_29_E05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_29_E05_A002 5', mRNA sequence
Length = 547
Score = 222 bits (112), Expect = 5e-056
Identities = 349/428 (81%)
Strand = Plus / Minus
Query: 414 gaacaccatgccgtggtgcgtcaactgggtgatcgctgtcaacgctgtcgtctcctggcc 473
||||||||| ||||||||||||| ||| || | ||| |||| || ||| |||||||||||
Sbjct: 547 gaacaccatcccgtggtgcgtcagctgcgtcaccgccgtcagcggtgtggtctcctggcc 488
Query: 474 accaccctgggatccagtgcagaagaagacgccggcaggcttgccggcaaggctctgctc 533
|| ||||||| ||||||| |||||||| ||| || ||||||||||| |||||||||||
Sbjct: 487 gccgccctgggtgccagtgctgaagaagaggccagcgggcttgccggccaggctctgctc 428
Query: 534 cctccagagcccaccagtggcatcgaagaacgccttcatctgcgctgccatcattccgaa 593
|| ||| ||||| || ||||| || ||||| ||||||||||| | |||||||| |||||
Sbjct: 427 ccgccacagcccgccggtggcgtcaaagaaggccttcatctgtgacgccatcatgccgaa 368
Query: 594 cctcgttgggaacccgaagaggattccgtcggcctctgcgagttcttgcggcgtgatgac 653
|| || || |||||||||||||| || |||||||| ||||| || |||||||||||||
Sbjct: 367 ccgtgtgggaaacccgaagaggatgccatcggcctcagcgagctcctgcggcgtgatgat 308
Query: 654 tggcacgtcaggcttagggggtgcgcccatctttccaagcacttcctcagggagggtttc 713
|| ||||| | ||| || || || |||||||| || || || ||||| | || ||||
Sbjct: 307 cggtacgtcggtcttgggtggcgcacccatcttgccgaggacctcctcggatagaatttc 248
Query: 714 agggacctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctc 773
|||||||||||| |||| | || || |||||||| |||| |||||||||| ||||||
Sbjct: 247 tgggacctgccatattttgacctccacgccttcaactgacgcagcacctttcttgatctc 188
Query: 774 ttcagctagtttgccaacatgtccatacatggaatagtacacgacgtagaccttaaccgc 833
|||||||| ||| ||||||| || || |||| || |||||||||||| ||| |||||
Sbjct: 187 ctcagctagcttggcaacatgcccgtaggtggagtaaaacacgacgtagatcttgaccgc 128
Query: 834 cattggag 841
||||||||
Sbjct: 127 cattggag 120
>gb|CF434383.1|CF434383 NIT1_29_F09.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_29_F09_A002 5', mRNA sequence
Length = 678
Score = 184 bits (93), Expect = 1e-044
Identities = 366/457 (80%)
Strand = Plus / Minus
Query: 385 ttggcgccgaaggtgtagcccacaggcacgaacaccatgccgtggtgcgtcaactgggtg 444
||||||||||| ||||| ||||| |||||||||||||| ||||||||||||| || ||
Sbjct: 628 ttggcgccgaacgtgtaccccaccggcacgaacaccatcccgtggtgcgtcaggtgcgtc 569
Query: 445 atcgctgtcaacgctgtcgtctcctggccaccaccctgggatccagtgcagaagaagacg 504
| ||| || | || ||| ||||||||||| || ||||||| ||||||| |||||||| |
Sbjct: 568 accgccgttagcggtgtggtctcctggccgccgccctgggtgccagtgctgaagaagagg 509
Query: 505 ccggcaggcttgccggcaaggctctgctccctccagagcccaccagtggcatcgaagaac 564
|| || ||||||||||| ||||| ||||||| ||| ||||| || ||||| || |||||
Sbjct: 508 ccagcgggcttgccggccaggctttgctcccgccacagcccgccggtggcgtcaaagaag 449
Query: 565 gccttcatctgcgctgccatcattccgaacctcgttgggaacccgaagaggattccgtcg 624
|||||||| || | |||||||| ||||||| || || |||||||||||||| || |||
Sbjct: 448 gccttcatttgtgacgccatcatgccgaaccgtgtgggaaacccgaagaggatgccatcg 389
Query: 625 gcctctgcgagttcttgcggcgtgatgactggcacgtcaggcttagggggtgcgcccatc 684
|||| ||||| || || |||||||||| || ||||| | ||| || || || ||||||
Sbjct: 388 gccttagcgagctcctggggcgtgatgatcggtacgtcggtcttgggtggcgcacccatc 329
Query: 685 tttccaagcacttcctcagggagggtttcagggacctgccatgttttagcttcaacacct 744
|| || || || |||| | || ||| |||||||||||| |||| | || || |||
Sbjct: 328 ttgccgaggacctccttggatagaatttttgggacctgccatattttgacctccacgcct 269
Query: 745 tcaacagacgaggcacctttctggatctcttcagctagtttgccaacatgtccatacatg 804
||||| |||| |||||||||| |||||| |||||||| ||| ||||||| || || ||
Sbjct: 268 tcaactgacgcagcacctttcttgatctcctcagctagcttggcaacatgcccgtaggtg 209
Query: 805 gaatagtacacgacgtagaccttaaccgccattggag 841
|| || |||||||||||| || |||||||||||||
Sbjct: 208 gagtaaaacacgacgtagattttgaccgccattggag 172
>gb|AW564079.1|AW564079 LG1_282_C06.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 474
Score = 180 bits (91), Expect = 2e-043
Identities = 289/355 (81%)
Strand = Plus / Minus
Query: 487 ccagtgcagaagaagacgccggcaggcttgccggcaaggctctgctccctccagagccca 546
||||||| |||||||| ||| || ||||||||||| ||||||||||||| ||| |||||
Sbjct: 467 ccagtgctgaagaagaggccagcgggcttgccggccaggctctgctcccgccacagcccg 408
Query: 547 ccagtggcatcgaagaacgccttcatctgcgctgccatcattccgaacctcgttgggaac 606
|| ||||| || ||||| ||||||||||| | |||||||| ||||||| || || |||
Sbjct: 407 ccggtggcgtcaaagaaggccttcatctgtgacgccatcatgccgaaccgtgtgggaaac 348
Query: 607 ccgaagaggattccgtcggcctctgcgagttcttgcggcgtgatgactggcacgtcaggc 666
||||||||||| || |||||||| ||||| || ||||||||||||| || ||||| | |
Sbjct: 347 ccgaagaggatgccatcggcctcagcgagctcctgcggcgtgatgatcggtacgtcggtc 288
Query: 667 ttagggggtgcgcccatctttccaagcacttcctcagggagggtttcagggacctgccat 726
|| || || || |||||||| || || || ||||| | || |||| ||||||||||||
Sbjct: 287 ttgggtggcgcacccatcttgccgaggacctcctcggatagaatttctgggacctgccat 228
Query: 727 gttttagcttcaacaccttcaacagacgaggcacctttctggatctcttcagctagtttg 786
|||| | || || |||||||| |||| |||||||||| |||||| |||||||| |||
Sbjct: 227 attttgacctccacgccttcaactgacgcagcacctttcttgatctcctcagctagcttg 168
Query: 787 ccaacatgtccatacatggaatagtacacgacgtagaccttaaccgccattggag 841
||||||| || || |||| || |||||||||||| ||| |||||||||||||
Sbjct: 167 gcaacatgcccgtaggtggagtaaaacacgacgtagatcttgaccgccattggag 113
>gb|CF428854.1|CF428854 PH1_18_E07.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_18_E07_A002 3', mRNA sequence
Length = 518
Score = 180 bits (91), Expect = 2e-043
Identities = 217/259 (83%)
Strand = Plus / Minus
Query: 235 cccttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagc 294
||||||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||||
Sbjct: 262 cccttgagcttcttggcgatgccggcgaagtacttgccctggtgaaaggcgtggtccagc 203
Query: 295 tccacctcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctg 354
|||| ||| ||||||||| ||| ||||| ||||||||||||| |||||||| | |||
Sbjct: 202 tccaactccgtcggccaccgcgacccgtccccggcgaacgtgcccgcgccgtacgcactg 143
Query: 355 ccgccctgaacctggtccatgccgaacagcttggcgccgaaggtgtagcccacaggcacg 414
||||| || || |||||| | || | ||||||||||| ||||| ||||| ||||||
Sbjct: 142 ccgccgtgcacgctctccatgtcaaatattttggcgccgaacgtgtaccccaccggcacg 83
Query: 415 aacaccatgccgtggtgcgtcaactgggtgatcgctgtcaacgctgtcgtctcctggcca 474
|||||||| ||||||||||||| ||| || | ||| |||| || ||| |||||||||||
Sbjct: 82 aacaccatcccgtggtgcgtcagctgcgtcaccgccgtcagcggtgtggtctcctggccg 23
Query: 475 ccaccctgggatccagtgc 493
|| ||||||| |||||||
Sbjct: 22 ccgccctgggtgccagtgc 4
>gb|BG102419.1|BG102419 RHIZ2_23_D12.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 483
Score = 174 bits (88), Expect = 1e-041
Identities = 295/364 (81%)
Strand = Plus / Minus
Query: 478 ccctgggatccagtgcagaagaagacgccggcaggcttgccggcaaggctctgctccctc 537
||||||| ||||||| |||||||| ||| || ||||||||||| ||||||||||||| |
Sbjct: 479 ccctgggtgccagtgctgaagaagaggccagcgggcttgccggccaggctctgctcccgc 420
Query: 538 cagagcccaccagtggcatcgaagaacgccttcatctgcgctgccatcattccgaacctc 597
|| ||||| || ||||| || ||||| ||||||||||| | |||||||| |||||||
Sbjct: 419 cacagcccgccggtggcgtcaaagaaggccttcatctgtgacgccatcatgccgaaccgt 360
Query: 598 gttgggaacccgaagaggattccgtcggcctctgcgagttcttgcggcgtgatgactggc 657
|| || |||||||||||||| || |||||||| ||||| || ||||||||||||| ||
Sbjct: 359 gtgggaaacccgaagaggatgccatcggcctcagcgagctcctgcggcgtgatgatcggt 300
Query: 658 acgtcaggcttagggggtgcgcccatctttccaagcacttcctcagggagggtttcaggg 717
|||| | ||| || || || |||||||| || || || ||||| | || |||| |||
Sbjct: 299 gcgtcggtcttgggtggcgcacccatcttgccgaggacctcctcggatagaatttctggg 240
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| |||| | || || |||||||| |||| |||||||||| |||||| |||
Sbjct: 239 acctgccatattttgacctccacgccttcaactgacgcagcacctttcttgatctcctca 180
Query: 778 gctagtttgccaacatgtccatacatggaatagtacacgacgtagaccttaaccgccatt 837
||||| ||| ||||||| || || |||| || |||||||||||| ||| |||||||||
Sbjct: 179 gctagcttggcaacatgcccgtaggtggagtaaaacacgacgtagatcttgaccgccatt 120
Query: 838 ggag 841
||||
Sbjct: 119 ggag 116
>gb|CF428962.1|CF428962 PH1_18_E07.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_18_E07_A002 5', mRNA sequence
Length = 554
Score = 172 bits (87), Expect = 4e-041
Identities = 288/355 (81%)
Strand = Plus / Minus
Query: 487 ccagtgcagaagaagacgccggcaggcttgccggcaaggctctgctccctccagagccca 546
||||||| |||||||| ||| || ||||||||||| ||||| ||||||| ||| |||||
Sbjct: 546 ccagtgctgaagaagaggccagcgggcttgccggccaggctttgctcccgccacagcccg 487
Query: 547 ccagtggcatcgaagaacgccttcatctgcgctgccatcattccgaacctcgttgggaac 606
|| ||||| || ||||| ||||||||||| | |||||||| ||||||| || || |||
Sbjct: 486 ccggtggcgtcaaagaaggccttcatctgtgacgccatcatgccgaaccgtgtgggaaac 427
Query: 607 ccgaagaggattccgtcggcctctgcgagttcttgcggcgtgatgactggcacgtcaggc 666
||||||||||| || |||||||| ||||| || ||||||||||||| || ||||| | |
Sbjct: 426 ccgaagaggatgccatcggcctcagcgagctcctgcggcgtgatgatcggtacgtcggtc 367
Query: 667 ttagggggtgcgcccatctttccaagcacttcctcagggagggtttcagggacctgccat 726
|| || || || |||||||| || || || ||||| | || |||| ||||||||||||
Sbjct: 366 ttgggtggcgcacccatcttgccgaggacctcctcggatagaatttctgggacctgccat 307
Query: 727 gttttagcttcaacaccttcaacagacgaggcacctttctggatctcttcagctagtttg 786
|||| | || || |||||||| |||| |||||||||| |||||| |||||||| |||
Sbjct: 306 attttgacctccacgccttcaactgacgcagcacctttcttgatctcctcagctagcttg 247
Query: 787 ccaacatgtccatacatggaatagtacacgacgtagaccttaaccgccattggag 841
||||||| || || |||| || |||||||||||| ||| |||||||||||||
Sbjct: 246 gcaacatgcccgtaggtggagtaaaacacgacgtagatcttgaccgccattggag 192
>gb|CW228994.1|CW228994 104_670_11207069_116_37259_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207069, DNA
sequence
Length = 657
Score = 170 bits (86), Expect = 2e-040
Identities = 173/202 (85%)
Strand = Plus / Plus
Query: 235 cccttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagc 294
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct: 44 cccttgagcttcttggcgatgccggcgaagtacttgccctggtgaaaggcgtgctccagc 103
Query: 295 tccacctcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctg 354
|||| ||| ||||||||| ||| ||||| ||||||||||||| |||||||| | |||
Sbjct: 104 tccaactccgtcggccaccgcgacccgtccccggcgaacgtgcccgcgccgtacgcactg 163
Query: 355 ccgccctgaacctggtccatgccgaacagcttggcgccgaaggtgtagcccacaggcacg 414
||||| || || |||||| | || | ||||||||||| ||||| ||||| ||||||
Sbjct: 164 ccgccgtgcacgctctccatgtcaaatattttggcgccgaacgtgtaccccaccggcacg 223
Query: 415 aacaccatgccgtggtgcgtca 436
|||||||| |||||||||||||
Sbjct: 224 aacaccatcccgtggtgcgtca 245
Score = 147 bits (74), Expect = 2e-033
Identities = 161/190 (84%)
Strand = Plus / Plus
Query: 463 gtctcctggccaccaccctgggatccagtgcagaagaagacgccggcaggcttgccggca 522
||||||||||| || ||||||| ||||||| |||||||| ||| || |||||||||||
Sbjct: 393 gtctcctggccgccgccctgggtgccagtgctgaagaagaggccagcgggcttgccggcc 452
Query: 523 aggctctgctccctccagagcccaccagtggcatcgaagaacgccttcatctgcgctgcc 582
||||||||||||| ||| ||||| || ||||| || ||||| ||||||||||| | |||
Sbjct: 453 aggctctgctcccgccacagcccgccggtggcgtcaaagaaggccttcatctgtgacgcc 512
Query: 583 atcattccgaacctcgttgggaacccgaagaggattccgtcggcctctgcgagttcttgc 642
||||| ||||||| || || |||||||||||||| || |||||||| ||||| || |||
Sbjct: 513 atcatgccgaaccgtgtgggaaacccgaagaggatgccatcggcctcagcgagctcctgc 572
Query: 643 ggcgtgatga 652
||||||||||
Sbjct: 573 ggcgtgatga 582
>gb|CW243974.1|CW243974 104_704_11220339_116_37577_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220339, DNA
sequence
Length = 661
Score = 170 bits (86), Expect = 2e-040
Identities = 173/202 (85%)
Strand = Plus / Plus
Query: 235 cccttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagc 294
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct: 306 cccttgagcttcttggcgatgccggcgaagtacttgccctggtgaaaggcgtgctccagc 365
Query: 295 tccacctcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctg 354
|||| ||| ||||||||| ||| ||||| ||||||||||||| |||||||| | |||
Sbjct: 366 tccaactccgtcggccaccgcgacccgtccccggcgaacgtgcccgcgccgtacgcactg 425
Query: 355 ccgccctgaacctggtccatgccgaacagcttggcgccgaaggtgtagcccacaggcacg 414
||||| || || |||||| | || | ||||||||||| ||||| ||||| ||||||
Sbjct: 426 ccgccgtgcacgctctccatgtcaaatattttggcgccgaacgtgtaccccaccggcacg 485
Query: 415 aacaccatgccgtggtgcgtca 436
|||||||| |||||||||||||
Sbjct: 486 aacaccatcccgtggtgcgtca 507
>gb|CW253913.1|CW253913 104_717_11225368_116_35113_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225368, DNA
sequence
Length = 640
Score = 170 bits (86), Expect = 2e-040
Identities = 173/202 (85%)
Strand = Plus / Plus
Query: 235 cccttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagc 294
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct: 155 cccttgagcttcttggcgatgccggcgaagtacttgccctggtgaaaggcgtgctccagc 214
Query: 295 tccacctcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctg 354
|||| ||| ||||||||| ||| ||||| ||||||||||||| |||||||| | |||
Sbjct: 215 tccaactccgtcggccaccgcgacccgtccccggcgaacgtgcccgcgccgtacgcactg 274
Query: 355 ccgccctgaacctggtccatgccgaacagcttggcgccgaaggtgtagcccacaggcacg 414
||||| || || |||||| | || | ||||||||||| ||||| ||||| ||||||
Sbjct: 275 ccgccgtgcacgctctccatgtcaaatattttggcgccgaacgtgtaccccaccggcacg 334
Query: 415 aacaccatgccgtggtgcgtca 436
|||||||| |||||||||||||
Sbjct: 335 aacaccatcccgtggtgcgtca 356
Score = 89.7 bits (45), Expect = 4e-016
Identities = 112/133 (84%), Gaps = 1/133 (0%)
Strand = Plus / Plus
Query: 463 gtctcctggccaccaccctgggatccagtgcagaagaagacgccggcaggcttgccggca 522
||||||||||| || ||||||| ||||||| |||||||| ||| || |||||||||||
Sbjct: 504 gtctcctggccgccgccctgggtgccagtgctgaagaagaggccagcgggcttgccggcc 563
Query: 523 aggctctgctccctccagagcccaccagtggcatcgaagaacgccttcatctgcgctgcc 582
||||||||||||| ||| ||||| || ||||| || ||| | ||||||||||| | |||
Sbjct: 564 aggctctgctcccgccacagcccgccggtggcgtcaaag-aggccttcatctgtgacgcc 622
Query: 583 atcattccgaacc 595
||||| |||||||
Sbjct: 623 atcatgccgaacc 635
>gb|CW387303.1|CW387303 fsbb001f071j10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f071j10, DNA
sequence
Length = 627
Score = 170 bits (86), Expect = 2e-040
Identities = 173/202 (85%)
Strand = Plus / Plus
Query: 235 cccttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagc 294
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct: 153 cccttgagcttcttggcgatgccggcgaagtacttgccctggtgaaaggcgtgctccagc 212
Query: 295 tccacctcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctg 354
|||| ||| ||||||||| ||| ||||| ||||||||||||| |||||||| | |||
Sbjct: 213 tccaactccgtcggccaccgcgacccgtccccggcgaacgtgcccgcgccgtacgcactg 272
Query: 355 ccgccctgaacctggtccatgccgaacagcttggcgccgaaggtgtagcccacaggcacg 414
||||| || || |||||| | || | ||||||||||| ||||| ||||| ||||||
Sbjct: 273 ccgccgtgcacgctctccatgtcaaatattttggcgccgaacgtgtaccccaccggcacg 332
Query: 415 aacaccatgccgtggtgcgtca 436
|||||||| |||||||||||||
Sbjct: 333 aacaccatcccgtggtgcgtca 354
Score = 69.9 bits (35), Expect = 4e-010
Identities = 84/99 (84%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 478 ccctgggatccagtgcagaagaagacgccggcaggcttgccggcaaggctctgctccctc 537
||||||| ||||||| |||||||| ||| || ||||||||||| ||||||||||||| |
Sbjct: 518 ccctgggtgccagtgctgaagaagaggccagcgggcttgccggccaggctctgctcccgc 577
Query: 538 cagag-cccaccagtggcatcgaagaacgccttcatctg 575
|| || ||| || ||||| || ||||| |||||||||||
Sbjct: 578 cacagccccgccggtggcgtcaaagaaggccttcatctg 616
>gb|CF428465.1|CF428465 PH1_15_D08.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_15_D08_A002 3', mRNA sequence
Length = 520
Score = 170 bits (86), Expect = 2e-040
Identities = 173/202 (85%)
Strand = Plus / Minus
Query: 235 cccttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagc 294
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct: 220 cccttgagcttcttggcgatgccggcgaagtacttgccctggtgaaaggcgtgctccagc 161
Query: 295 tccacctcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctg 354
|||| ||| ||||||||| ||| ||||| ||||||||||||| |||||||| | |||
Sbjct: 160 tccaactccgtcggccaccgcgacccgtccccggcgaacgtgcccgcgccgtacgcactg 101
Query: 355 ccgccctgaacctggtccatgccgaacagcttggcgccgaaggtgtagcccacaggcacg 414
||||| || || |||||| | || | ||||||||||| ||||| ||||| ||||||
Sbjct: 100 ccgccgtgcacgctctccatgtcaaatattttggcgccgaacgtgtaccccaccggcacg 41
Query: 415 aacaccatgccgtggtgcgtca 436
|||||||| |||||||||||||
Sbjct: 40 aacaccatcccgtggtgcgtca 19
>gb|CW243975.1|CW243975 104_704_11220339_148_37578_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220339, DNA
sequence
Length = 692
Score = 153 bits (77), Expect = 4e-035
Identities = 164/193 (84%)
Strand = Plus / Minus
Query: 244 ttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagctccacctcg 303
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||| |||
Sbjct: 618 ttcttggcgatgccggcgaagtacttgccctggtgaaaggcgtgctccagctccaactcc 559
Query: 304 ctcggccacctcgagccgtcggcggcgaacgtgccggcgccgtaggggctgccgccctga 363
||||||||| ||| ||||| ||||||||||||| |||||||| | |||||||| ||
Sbjct: 558 gtcggccaccgcgacccgtccccggcgaacgtgcccgcgccgtacgcactgccgccgtgc 499
Query: 364 acctggtccatgccgaacagcttggcgccgaaggtgtagcccacaggcacgaacaccatg 423
|| |||||| | || | ||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 498 acgctctccatgtcaaatattttggcgccgaacgtgtaccccaccggcacgaacaccatc 439
Query: 424 ccgtggtgcgtca 436
|||||||||||||
Sbjct: 438 ccgtggtgcgtca 426
Score = 147 bits (74), Expect = 2e-033
Identities = 161/190 (84%)
Strand = Plus / Minus
Query: 463 gtctcctggccaccaccctgggatccagtgcagaagaagacgccggcaggcttgccggca 522
||||||||||| || ||||||| ||||||| |||||||| ||| || |||||||||||
Sbjct: 278 gtctcctggccgccgccctgggtgccagtgctgaagaagaggccagcgggcttgccggcc 219
Query: 523 aggctctgctccctccagagcccaccagtggcatcgaagaacgccttcatctgcgctgcc 582
||||||||||||| ||| ||||| || ||||| || ||||| ||||||||||| | |||
Sbjct: 218 aggctctgctcccgccacagcccgccggtggcgtcaaagaaggccttcatctgtgacgcc 159
Query: 583 atcattccgaacctcgttgggaacccgaagaggattccgtcggcctctgcgagttcttgc 642
||||| ||||||| || || |||||||||||||| || |||||||| ||||| || |||
Sbjct: 158 atcatgccgaaccgtgtgggaaacccgaagaggatgccatcggcctcagcgagctcctgc 99
Query: 643 ggcgtgatga 652
||||||||||
Sbjct: 98 ggcgtgatga 89
>gb|CW303725.1|CW303725 104_788_11465394_116_35692_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465394, DNA
sequence
Length = 674
Score = 147 bits (74), Expect = 2e-033
Identities = 161/190 (84%)
Strand = Plus / Plus
Query: 463 gtctcctggccaccaccctgggatccagtgcagaagaagacgccggcaggcttgccggca 522
||||||||||| || ||||||| ||||||| |||||||| ||| || |||||||||||
Sbjct: 115 gtctcctggccgccgccctgggtgccagtgctgaagaagaggccagcgggcttgccggcc 174
Query: 523 aggctctgctccctccagagcccaccagtggcatcgaagaacgccttcatctgcgctgcc 582
||||||||||||| ||| ||||| || ||||| || ||||| ||||||||||| | |||
Sbjct: 175 aggctctgctcccgccacagcccgccggtggcgtcaaagaaggccttcatctgtgacgcc 234
Query: 583 atcattccgaacctcgttgggaacccgaagaggattccgtcggcctctgcgagttcttgc 642
||||| ||||||| || || |||||||||||||| || |||||||| ||||| || |||
Sbjct: 235 atcatgccgaaccgtgtgggaaacccgaagaggatgccatcggcctcagcgagctcctgc 294
Query: 643 ggcgtgatga 652
||||||||||
Sbjct: 295 ggcgtgatga 304
>gb|CW253914.1|CW253914 104_717_11225368_148_35109_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225368, DNA
sequence
Length = 635
Score = 145 bits (73), Expect = 9e-033
Identities = 160/189 (84%)
Strand = Plus / Minus
Query: 464 tctcctggccaccaccctgggatccagtgcagaagaagacgccggcaggcttgccggcaa 523
|||||||||| || ||||||| ||||||| |||||||| ||| || ||||||||||| |
Sbjct: 523 tctcctggccgccgccctgggtgccagtgctgaagaagaggccagcgggcttgccggcca 464
Query: 524 ggctctgctccctccagagcccaccagtggcatcgaagaacgccttcatctgcgctgcca 583
|||||||||||| ||| ||||| || ||||| || ||||| ||||||||||| | ||||
Sbjct: 463 ggctctgctcccgccacagcccgccggtggcgtcaaagaaggccttcatctgtgacgcca 404
Query: 584 tcattccgaacctcgttgggaacccgaagaggattccgtcggcctctgcgagttcttgcg 643
|||| ||||||| || || |||||||||||||| || |||||||| ||||| || ||||
Sbjct: 403 tcatgccgaaccgtgtgggaaacccgaagaggatgccatcggcctcagcgagctcctgcg 344
Query: 644 gcgtgatga 652
|||||||||
Sbjct: 343 gcgtgatga 335
>gb|AW283903.1|AW283903 LG1_282_C06.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 414
Score = 137 bits (69), Expect = 2e-030
Identities = 102/113 (90%)
Strand = Plus / Minus
Query: 235 cccttgagcttcttggcgatgcctgcgaagtacttcccctggtggaaggcgtgctccagc 294
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct: 126 cccttgagcttcttggcgatgccggcgaagtacttgccctggtgaaaggcgtgctccagc 67
Query: 295 tccacctcgctcggccacctcgagccgtcggcggcgaacgtgccggcgccgta 347
|||| ||| ||||||||| ||| ||||| ||||||||||||| ||||||||
Sbjct: 66 tccaactccgtcggccaccgcgacccgtccccggcgaacgtgcccgcgccgta 14
>gb|CW052316.1|CW052316 104_292_10515512_115_30190 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515512, DNA
sequence
Length = 412
Score = 135 bits (68), Expect = 8e-030
Identities = 89/96 (92%)
Strand = Plus / Minus
Query: 718 acctgccatgttttagcttcaacaccttcaacagacgaggcacctttctggatctcttca 777
||||||||| ||||||| ||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct: 248 acctgccatattttagcctcaacaccttcaatagatgaggcacctttcttgatctcttca 189
Query: 778 gctagtttgccaacatgtccatacatggaatagtac 813
|||||||||||||||||||||||| |||| ||||||
Sbjct: 188 gctagtttgccaacatgtccatacgtggagtagtac 153
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 245,756
Number of Sequences: 832831
Number of extensions: 245756
Number of successful extensions: 70441
Number of sequences better than 0.5: 78
Number of HSP's better than 0.5 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70241
Number of HSP's gapped (non-prelim): 170
length of query: 962
length of database: 491,359,669
effective HSP length: 20
effective length of query: 942
effective length of database: 474,703,049
effective search space: 447170272158
effective search space used: 447170272158
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)