BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441110.2.1
(643 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG049316.1|BG049316 OV1_18_D09.g1_A002 Ovary 1 (OV1) Sor... 656 0.0
gb|CD463125.1|CD463125 ETH1_42_A11.b1_A002 Ethylene-treated... 656 0.0
gb|CF486181.1|CF486181 POL1_36_E11.b1_A002 Pollen Sorghum b... 656 0.0
gb|CN128569.1|CN128569 RHOH1_30_G10.b1_A002 Acid- and alkal... 656 0.0
gb|CN141236.1|CN141236 OX1_50_E01.b1_A002 Oxidatively-stres... 656 0.0
gb|BE597381.1|BE597381 PI1_72_G12.g1_A002 Pathogen induced ... 648 0.0
gb|BM327398.1|BM327398 PIC1_14_C07.g1_A002 Pathogen-infecte... 648 0.0
gb|CF485251.1|CF485251 POL1_30_H05.b1_A002 Pollen Sorghum b... 648 0.0
gb|CN124370.1|CN124370 RHOH1_4_G03.b1_A002 Acid- and alkali... 648 0.0
gb|BG465337.1|BG465337 EM1_75_B01.g1_A002 Embryo 1 (EM1) So... 642 0.0
gb|CD432617.1|CD432617 ETH1_25_F07.b1_A002 Ethylene-treated... 642 0.0
gb|CF488232.1|CF488232 POL1_48_C07.g1_A002 Pollen Sorghum b... 634 e-180
gb|BG557945.1|BG557945 EM1_39_E11.g1_A002 Embryo 1 (EM1) So... 615 e-174
gb|CN128660.1|CN128660 RHOH1_30_G10.g1_A002 Acid- and alkal... 615 e-174
gb|BG556861.1|BG556861 EM1_39_E11.b1_A002 Embryo 1 (EM1) So... 432 e-119
gb|CL169616.1|CL169616 104_368_10812763_148_31808_235 Sorgh... 385 e-105
gb|CD430682.1|CD430682 ETH1_20_C10.g1_A002 Ethylene-treated... 367 e-100
gb|CD463150.1|CD463150 ETH1_42_A11.g1_A002 Ethylene-treated... 337 8e-091
gb|CD432713.1|CD432713 ETH1_25_F07.g1_A002 Ethylene-treated... 315 3e-084
gb|CD428992.1|CD428992 ETH1_1_A07.g1_A002 Ethylene-treated ... 224 8e-057
gb|BE366246.1|BE366246 PI1_31_B08.g1_A002 Pathogen induced ... 202 3e-050
gb|BG410710.1|BG410710 EM1_25_A05.g1_A002 Embryo 1 (EM1) So... 202 3e-050
gb|BG739419.1|BG739419 EM1_82_F12.g1_A002 Embryo 1 (EM1) So... 202 3e-050
gb|BG932934.1|BG932934 DG1_69_B08.g1_A002 Dark Grown 1 (DG1... 202 3e-050
gb|BI074494.1|BI074494 IP1_16_G05.g1_A002 Immature pannicle... 202 3e-050
gb|CD221229.1|CD221229 CCC1_74_E08.b1_A007 Callus culture/c... 202 3e-050
gb|CN128667.1|CN128667 RHOH1_30_H05.g1_A002 Acid- and alkal... 202 3e-050
gb|BG556535.1|BG556535 EM1_38_D10.g1_A002 Embryo 1 (EM1) So... 196 2e-048
gb|CN144412.1|CN144412 WOUND1_22_C06.b1_A002 Wounded leaves... 194 7e-048
gb|CN144473.1|CN144473 WOUND1_22_C06.g1_A002 Wounded leaves... 194 7e-048
gb|CN128576.1|CN128576 RHOH1_30_H05.b1_A002 Acid- and alkal... 186 2e-045
gb|AW677370.1|AW677370 DG1_6_G12.b1_A002 Dark Grown 1 (DG1)... 155 6e-036
gb|BI140327.1|BI140327 IP1_52_A03.g1_A002 Immature pannicle... 153 2e-035
gb|BM328253.1|BM328253 PIC1_22_H06.g1_A002 Pathogen-infecte... 153 2e-035
gb|CF488544.1|CF488544 POL1_50_D11.g1_A002 Pollen Sorghum b... 153 2e-035
gb|BG558927.1|BG558927 RHIZ2_52_D10.g1_A003 Rhizome2 (RHIZ2... 143 2e-032
gb|BG559243.1|BG559243 RHIZ2_52_D10.b1_A003 Rhizome2 (RHIZ2... 143 2e-032
gb|AW677237.1|AW677237 DG1_6_G12.g1_A002 Dark Grown 1 (DG1)... 135 6e-030
gb|BE361076.1|BE361076 DG1_69_B08.b1_A002 Dark Grown 1 (DG1... 129 3e-028
gb|BE366220.1|BE366220 PI1_31_B08.b2_A002 Pathogen induced ... 129 3e-028
gb|BG739586.1|BG739586 EM1_82_F12.b1_A002 Embryo 1 (EM1) So... 125 5e-027
gb|CW316112.1|CW316112 104_807_11472721_148_35844_007 Sorgh... 123 2e-026
gb|CW398305.1|CW398305 fsbb001f087k23f0 Sorghum methylation... 123 2e-026
gb|CF770226.1|CF770226 DSBF1_6_A09.g1_A010 Drought-stressed... 123 2e-026
gb|AW745579.1|AW745579 WS1_35_G04.g1_A002 Water-stressed 1 ... 119 3e-025
gb|BG559904.1|BG559904 RHIZ2_75_B03.g1_A003 Rhizome2 (RHIZ2... 115 5e-024
gb|CF488464.1|CF488464 POL1_50_D11.b1_A002 Pollen Sorghum b... 115 5e-024
gb|BI074813.1|BI074813 IP1_16_G05.b1_A002 Immature pannicle... 113 2e-023
gb|CD429707.1|CD429707 ETH1_15_H12.b1_A002 Ethylene-treated... 113 2e-023
gb|BG560491.1|BG560491 RHIZ2_75_B03.b1_A003 Rhizome2 (RHIZ2... 109 3e-022
gb|CD221256.1|CD221256 CCC1_74_E08.g1_A007 Callus culture/c... 109 3e-022
gb|CF770146.1|CF770146 DSBF1_6_A09.b1_A010 Drought-stressed... 105 5e-021
gb|BG411038.1|BG411038 EM1_25_A05.b1_A002 Embryo 1 (EM1) So... 101 8e-020
gb|AW745465.1|AW745465 WS1_35_G04.b1_A002 Water-stressed 1 ... 96 5e-018
gb|BG556775.1|BG556775 EM1_38_D10.b1_A002 Embryo 1 (EM1) So... 96 5e-018
gb|BM328532.1|BM328532 PIC1_30_D03.g1_A002 Pathogen-infecte... 96 5e-018
gb|BF317864.1|BF317864 OV1_10_F06.g1_A002 Ovary 1 (OV1) Sor... 88 1e-015
gb|CF756372.1|CF756372 DSAF1_5_E02.b1_A011 Drought-stressed... 74 2e-011
gb|CF756458.1|CF756458 DSAF1_5_E02.g1_A011 Drought-stressed... 74 2e-011
gb|CF488150.1|CF488150 POL1_48_C07.b1_A002 Pollen Sorghum b... 72 7e-011
gb|CW171340.1|CW171340 104_582_11155686_148_36527_029 Sorgh... 62 7e-008
gb|CW260646.1|CW260646 104_727_11229078_116_35196_023 Sorgh... 62 7e-008
gb|BF318007.1|BF318007 OV1_10_F06.b1_A002 Ovary 1 (OV1) Sor... 60 3e-007
gb|CW090836.1|CW090836 104_436_10949500_116_32611_002 Sorgh... 58 1e-006
gb|CW213081.1|CW213081 104_644_11191359_116_37026_056 Sorgh... 58 1e-006
gb|CW213082.1|CW213082 104_644_11191359_148_37027_056 Sorgh... 58 1e-006
gb|AW678236.1|AW678236 WS1_14_H05.b1_A002 Water-stressed 1 ... 58 1e-006
gb|CF486265.1|CF486265 POL1_36_E11.g1_A002 Pollen Sorghum b... 58 1e-006
gb|CF757800.1|CF757800 DSAF1_22_E01.g1_A011 Drought-stresse... 52 6e-005
gb|CW183802.1|CW183802 104_599_11164809_148_36672_033 Sorgh... 46 0.004
gb|CW220477.1|CW220477 104_655_11197369_148_37158_013 Sorgh... 46 0.004
gb|CW260253.1|CW260253 104_726_11228863_148_35188_018 Sorgh... 46 0.004
gb|CF485333.1|CF485333 POL1_30_H05.g1_A002 Pollen Sorghum b... 42 0.062
>gb|BG049316.1|BG049316 OV1_18_D09.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 609
Score = 656 bits (331), Expect = 0.0
Identities = 411/440 (93%)
Strand = Plus / Minus
Query: 204 atgatgatcatcgttcacgtgacgaaataccaaccagaacaaataacaaggcnnnnnnnt 263
|||||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct: 463 atgatgatcatcgttcctgtgacgaacaaccaaccagaacaaataacaaggcaaaaaaat 404
Query: 264 cgctgggctgagcaagcgccccggcaagggccctacttgatgtattgggagacccacttg 323
| |||||||||||| | | | ||||||||||||||||||||||| |||||||||||||||
Sbjct: 403 cactgggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttg 344
Query: 324 aaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccgg 383
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aaaccatcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccgg 284
Query: 384 acattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctagg 443
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 acattggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctagg 224
Query: 444 tgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgccaaggatg 503
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 223 tgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatg 164
Query: 504 agaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctccttttttgat 563
|||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 163 agaaatggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgat 104
Query: 564 tcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaacctttgcg 623
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 103 tctgcaaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcg 44
Query: 624 tagtaatccttccagacgcg 643
|| |||||||||||||||||
Sbjct: 43 taataatccttccagacgcg 24
Score = 206 bits (104), Expect = 2e-051
Identities = 141/152 (92%), Gaps = 1/152 (0%)
Strand = Plus / Minus
Query: 41 atgcatcgcaggcaagtccttagtaaaggtcctacggaaaagcaaaagaattccaggagt 100
|||||||||| |||||| ||||||||| |||||| ||||||||||||||||| |||||||
Sbjct: 609 atgcatcgcaagcaagttcttagtaaacgtcctatggaaaagcaaaagaatttcaggagt 550
Query: 101 ttgactgacataacaaaatgttttcacgctaaagattcaacatgttccccaatgttaagc 160
|||| |||||||||||| |||||| || |||||||||||||||||||| |||||||||||
Sbjct: 549 ttgattgacataacaaattgttttgacactaaagattcaacatgttcctcaatgttaagc 490
Query: 161 actgttttttcctcttcatacccctccatgat 192
|||||||||||||||||||| |||||||||||
Sbjct: 489 actgttttttcctcttcata-ccctccatgat 459
>gb|CD463125.1|CD463125 ETH1_42_A11.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_42_A11_A002 3', mRNA sequence
Length = 680
Score = 656 bits (331), Expect = 0.0
Identities = 411/440 (93%)
Strand = Plus / Minus
Query: 204 atgatgatcatcgttcacgtgacgaaataccaaccagaacaaataacaaggcnnnnnnnt 263
|||||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct: 591 atgatgatcatcgttcctgtgacgaacaaccaaccagaacaaataacaaggcaaaaaaat 532
Query: 264 cgctgggctgagcaagcgccccggcaagggccctacttgatgtattgggagacccacttg 323
| |||||||||||| | | | ||||||||||||||||||||||| |||||||||||||||
Sbjct: 531 cactgggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttg 472
Query: 324 aaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccgg 383
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aaaccatcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccgg 412
Query: 384 acattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctagg 443
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 acattggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctagg 352
Query: 444 tgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgccaaggatg 503
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 351 tgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatg 292
Query: 504 agaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctccttttttgat 563
|||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 291 agaaatggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgat 232
Query: 564 tcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaacctttgcg 623
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 231 tctgcaaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcg 172
Query: 624 tagtaatccttccagacgcg 643
|| |||||||||||||||||
Sbjct: 171 taataatccttccagacgcg 152
Score = 133 bits (67), Expect = 2e-029
Identities = 89/95 (93%), Gaps = 1/95 (1%)
Strand = Plus / Minus
Query: 98 agtttgactgacataacaaaatgttttcacgctaaagattcaacatgttccccaatgtta 157
||||||| |||||||||||| |||||| || |||||||||||||||||||| ||||||||
Sbjct: 680 agtttgattgacataacaaattgttttgacactaaagattcaacatgttcctcaatgtta 621
Query: 158 agcactgttttttcctcttcatacccctccatgat 192
||||||||||||||||||||||| |||||||||||
Sbjct: 620 agcactgttttttcctcttcata-ccctccatgat 587
>gb|CF486181.1|CF486181 POL1_36_E11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_36_E11_A002 3', mRNA sequence
Length = 720
Score = 656 bits (331), Expect = 0.0
Identities = 411/440 (93%)
Strand = Plus / Minus
Query: 204 atgatgatcatcgttcacgtgacgaaataccaaccagaacaaataacaaggcnnnnnnnt 263
|||||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct: 555 atgatgatcatcgttcctgtgacgaacaaccaaccagaacaaataacaaggcaaaaaaat 496
Query: 264 cgctgggctgagcaagcgccccggcaagggccctacttgatgtattgggagacccacttg 323
| |||||||||||| | | | ||||||||||||||||||||||| |||||||||||||||
Sbjct: 495 cactgggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttg 436
Query: 324 aaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccgg 383
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaaccatcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccgg 376
Query: 384 acattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctagg 443
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 acattggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctagg 316
Query: 444 tgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgccaaggatg 503
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 315 tgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatg 256
Query: 504 agaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctccttttttgat 563
|||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 255 agaaatggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgat 196
Query: 564 tcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaacctttgcg 623
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 195 tctgcaaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcg 136
Query: 624 tagtaatccttccagacgcg 643
|| |||||||||||||||||
Sbjct: 135 taataatccttccagacgcg 116
Score = 224 bits (113), Expect = 8e-057
Identities = 150/161 (93%), Gaps = 1/161 (0%)
Strand = Plus / Minus
Query: 32 aatcttataatgcatcgcaggcaagtccttagtaaaggtcctacggaaaagcaaaagaat 91
||||||||||||||||||| |||||| ||||||||| |||||| ||||||||||||||||
Sbjct: 710 aatcttataatgcatcgcaagcaagttcttagtaaacgtcctatggaaaagcaaaagaat 651
Query: 92 tccaggagtttgactgacataacaaaatgttttcacgctaaagattcaacatgttcccca 151
| ||||||||||| |||||||||||| |||||| || |||||||||||||||||||| ||
Sbjct: 650 ttcaggagtttgattgacataacaaattgttttgacactaaagattcaacatgttcctca 591
Query: 152 atgttaagcactgttttttcctcttcatacccctccatgat 192
||||||||||||||||||||||||||||| |||||||||||
Sbjct: 590 atgttaagcactgttttttcctcttcata-ccctccatgat 551
>gb|CN128569.1|CN128569 RHOH1_30_G10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_30_G10_A002 3', mRNA sequence
Length = 747
Score = 656 bits (331), Expect = 0.0
Identities = 411/440 (93%)
Strand = Plus / Minus
Query: 204 atgatgatcatcgttcacgtgacgaaataccaaccagaacaaataacaaggcnnnnnnnt 263
|||||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct: 591 atgatgatcatcgttcctgtgacgaacaaccaaccagaacaaataacaaggcaaaaaaat 532
Query: 264 cgctgggctgagcaagcgccccggcaagggccctacttgatgtattgggagacccacttg 323
| |||||||||||| | | | ||||||||||||||||||||||| |||||||||||||||
Sbjct: 531 cactgggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttg 472
Query: 324 aaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccgg 383
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aaaccatcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccgg 412
Query: 384 acattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctagg 443
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 acattggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctagg 352
Query: 444 tgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgccaaggatg 503
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 351 tgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatg 292
Query: 504 agaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctccttttttgat 563
|||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 291 agaaatggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgat 232
Query: 564 tcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaacctttgcg 623
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 231 tctgcaaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcg 172
Query: 624 tagtaatccttccagacgcg 643
|| |||||||||||||||||
Sbjct: 171 taataatccttccagacgcg 152
Score = 224 bits (113), Expect = 8e-057
Identities = 150/161 (93%), Gaps = 1/161 (0%)
Strand = Plus / Minus
Query: 32 aatcttataatgcatcgcaggcaagtccttagtaaaggtcctacggaaaagcaaaagaat 91
||||||||||||||||||| |||||| ||||||||| |||||| ||||||||||||||||
Sbjct: 746 aatcttataatgcatcgcaagcaagttcttagtaaacgtcctatggaaaagcaaaagaat 687
Query: 92 tccaggagtttgactgacataacaaaatgttttcacgctaaagattcaacatgttcccca 151
| ||||||||||| |||||||||||| |||||| || |||||||||||||||||||| ||
Sbjct: 686 ttcaggagtttgattgacataacaaattgttttgacactaaagattcaacatgttcctca 627
Query: 152 atgttaagcactgttttttcctcttcatacccctccatgat 192
||||||||||||||||||||||||||||| |||||||||||
Sbjct: 626 atgttaagcactgttttttcctcttcata-ccctccatgat 587
>gb|CN141236.1|CN141236 OX1_50_E01.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_50_E01_A002 3', mRNA sequence
Length = 721
Score = 656 bits (331), Expect = 0.0
Identities = 411/440 (93%)
Strand = Plus / Minus
Query: 204 atgatgatcatcgttcacgtgacgaaataccaaccagaacaaataacaaggcnnnnnnnt 263
|||||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct: 579 atgatgatcatcgttcctgtgacgaacaaccaaccagaacaaataacaaggcaaaaaaat 520
Query: 264 cgctgggctgagcaagcgccccggcaagggccctacttgatgtattgggagacccacttg 323
| |||||||||||| | | | ||||||||||||||||||||||| |||||||||||||||
Sbjct: 519 cactgggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttg 460
Query: 324 aaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccgg 383
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aaaccatcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccgg 400
Query: 384 acattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctagg 443
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 acattggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctagg 340
Query: 444 tgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgccaaggatg 503
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 339 tgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatg 280
Query: 504 agaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctccttttttgat 563
|||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 279 agaaatggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgat 220
Query: 564 tcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaacctttgcg 623
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 219 tctgcaaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcg 160
Query: 624 tagtaatccttccagacgcg 643
|| |||||||||||||||||
Sbjct: 159 taataatccttccagacgcg 140
Score = 180 bits (91), Expect = 1e-043
Identities = 137/150 (91%), Gaps = 3/150 (2%)
Strand = Plus / Minus
Query: 43 gcatcgcaggcaagtccttagtaaaggtcctacggaaaagcaaaagaattccaggagttt 102
|||||||| |||||| ||||||||| |||||| |||| ||||||||||| |||||||||
Sbjct: 721 gcatcgcaagcaagttcttagtaaacgtcctatggaa--gcaaaagaatttcaggagttt 664
Query: 103 gactgacataacaaaatgttttcacgctaaagattcaacatgttccccaatgttaagcac 162
|| |||||||||||| |||||| || |||||||||||||||||||| |||||||||||||
Sbjct: 663 gattgacataacaaattgttttgacactaaagattcaacatgttcctcaatgttaagcac 604
Query: 163 tgttttttcctcttcatacccctccatgat 192
|||||||||||||||||| |||||||||||
Sbjct: 603 tgttttttcctcttcata-ccctccatgat 575
>gb|BE597381.1|BE597381 PI1_72_G12.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 685
Score = 648 bits (327), Expect = 0.0
Identities = 410/440 (93%)
Strand = Plus / Minus
Query: 204 atgatgatcatcgttcacgtgacgaaataccaaccagaacaaataacaaggcnnnnnnnt 263
|||||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct: 557 atgatgatcatcgttcctgtgacgaacaaccaaccagaacaaataacaaggcaaaaaaat 498
Query: 264 cgctgggctgagcaagcgccccggcaagggccctacttgatgtattgggagacccacttg 323
| |||||||||||| | | | ||||||||||||||||||||||| |||||||||||||||
Sbjct: 497 cactgggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttg 438
Query: 324 aaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccgg 383
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaaccatcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccgg 378
Query: 384 acattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctagg 443
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 acattggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctagg 318
Query: 444 tgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgccaaggatg 503
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 317 tgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatg 258
Query: 504 agaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctccttttttgat 563
|||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 257 agaaatggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgat 198
Query: 564 tcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaacctttgcg 623
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 197 tctgcaaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcg 138
Query: 624 tagtaatccttccagacgcg 643
|| |||||||| ||||||||
Sbjct: 137 taataatccttacagacgcg 118
Score = 168 bits (85), Expect = 4e-040
Identities = 110/117 (94%), Gaps = 1/117 (0%)
Strand = Plus / Minus
Query: 76 ggaaaagcaaaagaattccaggagtttgactgacataacaaaatgttttcacgctaaaga 135
||||||||||||||||| ||||||||||| |||||||||||| |||||| || |||||||
Sbjct: 668 ggaaaagcaaaagaatttcaggagtttgattgacataacaaattgttttgacactaaaga 609
Query: 136 ttcaacatgttccccaatgttaagcactgttttttcctcttcatacccctccatgat 192
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 608 ttcaacatgttcctcaatgttaagcactgttttttcctcttcata-ccctccatgat 553
>gb|BM327398.1|BM327398 PIC1_14_C07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 572
Score = 648 bits (327), Expect = 0.0
Identities = 410/440 (93%)
Strand = Plus / Minus
Query: 204 atgatgatcatcgttcacgtgacgaaataccaaccagaacaaataacaaggcnnnnnnnt 263
|||||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct: 462 atgatgatcatcgttcctgtgacgaacaaccaaccagaacaaataacaaggcaaaaaaat 403
Query: 264 cgctgggctgagcaagcgccccggcaagggccctacttgatgtattgggagacccacttg 323
| |||||||||||| | | | ||||||||||||||||||||||| |||||||||||||||
Sbjct: 402 cactgggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttg 343
Query: 324 aaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccgg 383
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aaaccatcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccgg 283
Query: 384 acattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctagg 443
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 acattggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctagg 223
Query: 444 tgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgccaaggatg 503
|||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 222 tgataccgtagctcctcttcagagacagcatatgggatatcaatcttgttgccaaggatg 163
Query: 504 agaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctccttttttgat 563
|||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 162 agaaatggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgat 103
Query: 564 tcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaacctttgcg 623
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 102 tctgcaaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcg 43
Query: 624 tagtaatccttccagacgcg 643
|| |||||||||||||||||
Sbjct: 42 taataatccttccagacgcg 23
Score = 167 bits (84), Expect = 2e-039
Identities = 109/116 (93%), Gaps = 1/116 (0%)
Strand = Plus / Minus
Query: 77 gaaaagcaaaagaattccaggagtttgactgacataacaaaatgttttcacgctaaagat 136
|||||||||||||||| ||||||||||| |||||||||||| |||||| || ||||||||
Sbjct: 572 gaaaagcaaaagaatttcaggagtttgattgacataacaaattgttttgacactaaagat 513
Query: 137 tcaacatgttccccaatgttaagcactgttttttcctcttcatacccctccatgat 192
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 512 tcaacatgttcctcaatgttaagcactgttttttcctcttcata-ccctccatgat 458
>gb|CF485251.1|CF485251 POL1_30_H05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_30_H05_A002 3', mRNA sequence
Length = 570
Score = 648 bits (327), Expect = 0.0
Identities = 410/440 (93%)
Strand = Plus / Minus
Query: 204 atgatgatcatcgttcacgtgacgaaataccaaccagaacaaataacaaggcnnnnnnnt 263
|||||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct: 459 atgatgatcatcgttcctgtgacgaacaaccaaccagaacaaataacaaggcaaaaaaat 400
Query: 264 cgctgggctgagcaagcgccccggcaagggccctacttgatgtattgggagacccacttg 323
| |||||||||||| | | | ||||||||||||||||||||||| |||||||||||||||
Sbjct: 399 cactgggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttg 340
Query: 324 aaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccgg 383
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aaaccatcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccgg 280
Query: 384 acattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctagg 443
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 279 acattggagtcaccaaggttgaccttgcccttcccgattgtgaagttgctaaggcctagg 220
Query: 444 tgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgccaaggatg 503
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 219 tgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatg 160
Query: 504 agaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctccttttttgat 563
|||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 159 agaaatggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgat 100
Query: 564 tcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaacctttgcg 623
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 99 tctgcaaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcg 40
Query: 624 tagtaatccttccagacgcg 643
|| |||||||||||||||||
Sbjct: 39 taataatccttccagacgcg 20
Score = 168 bits (85), Expect = 4e-040
Identities = 110/117 (94%), Gaps = 1/117 (0%)
Strand = Plus / Minus
Query: 76 ggaaaagcaaaagaattccaggagtttgactgacataacaaaatgttttcacgctaaaga 135
||||||||||||||||| ||||||||||| |||||||||||| |||||| || |||||||
Sbjct: 570 ggaaaagcaaaagaatttcaggagtttgattgacataacaaattgttttgacactaaaga 511
Query: 136 ttcaacatgttccccaatgttaagcactgttttttcctcttcatacccctccatgat 192
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 510 ttcaacatgttcctcaatgttaagcactgttttttcctcttcata-ccctccatgat 455
>gb|CN124370.1|CN124370 RHOH1_4_G03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_4_G03_A002 3', mRNA sequence
Length = 607
Score = 648 bits (327), Expect = 0.0
Identities = 410/440 (93%)
Strand = Plus / Minus
Query: 204 atgatgatcatcgttcacgtgacgaaataccaaccagaacaaataacaaggcnnnnnnnt 263
|||||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct: 498 atgatgatcatcgttcctgtgacgaacaaccaaccagaacaaataacaaggcaaaaaaat 439
Query: 264 cgctgggctgagcaagcgccccggcaagggccctacttgatgtattgggagacccacttg 323
| |||||||||||| | | | ||||||||||||||||||||||| |||||| ||||||||
Sbjct: 438 cactgggctgagcatgtggctcggcaagggccctacttgatgtactgggagtcccacttg 379
Query: 324 aaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccgg 383
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aaaccatcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccgg 319
Query: 384 acattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctagg 443
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 acattggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctagg 259
Query: 444 tgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgccaaggatg 503
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 258 tgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatg 199
Query: 504 agaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctccttttttgat 563
|||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 198 agaaatggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgat 139
Query: 564 tcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaacctttgcg 623
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 138 tctgcaaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcg 79
Query: 624 tagtaatccttccagacgcg 643
|| |||||||||||||||||
Sbjct: 78 taataatccttccagacgcg 59
Score = 155 bits (78), Expect = 6e-036
Identities = 103/110 (93%), Gaps = 1/110 (0%)
Strand = Plus / Minus
Query: 83 caaaagaattccaggagtttgactgacataacaaaatgttttcacgctaaagattcaaca 142
|||||||||| ||||||||||| |||||||||||| |||||| || ||||||||||||||
Sbjct: 602 caaaagaatttcaggagtttgattgacataacaaattgttttgacactaaagattcaaca 543
Query: 143 tgttccccaatgttaagcactgttttttcctcttcatacccctccatgat 192
|||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 542 tgttcctcaatgttaagcactgttttttcctcttcata-ccctccatgat 494
>gb|BG465337.1|BG465337 EM1_75_B01.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 494
Score = 642 bits (324), Expect = 0.0
Identities = 411/441 (93%), Gaps = 1/441 (0%)
Strand = Plus / Minus
Query: 204 atgatgatcatcgttcacgtgacgaaataccaaccagaacaaataacaaggcnnnnnnn- 262
|||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 451 atgatgatcatcgttcctgtgacgaacaaccaaccagaacaaataacaaggcaaaaaaaa 392
Query: 263 tcgctgggctgagcaagcgccccggcaagggccctacttgatgtattgggagacccactt 322
|| |||||||||||| | | | ||||||||||||||||||||||| ||||||||||||||
Sbjct: 391 tcactgggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccactt 332
Query: 323 gaaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccg 382
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gaaaccatcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccg 272
Query: 383 gacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctag 442
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gacattggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctag 212
Query: 443 gtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgccaaggat 502
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 211 gtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggat 152
Query: 503 gagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctccttttttga 562
||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 151 gagaaatggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttga 92
Query: 563 ttcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaacctttgc 622
||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 91 ttctgcaaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgc 32
Query: 623 gtagtaatccttccagacgcg 643
||| |||||||||||||||||
Sbjct: 31 gtaataatccttccagacgcg 11
Score = 73.8 bits (37), Expect = 2e-011
Identities = 47/49 (95%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 144 gttccccaatgttaagcactgttttttcctcttcatacccctccatgat 192
||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 494 gttcctcaatgttaagcactgttttttcctcttcata-ccctccatgat 447
>gb|CD432617.1|CD432617 ETH1_25_F07.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_25_F07_A002 3', mRNA sequence
Length = 587
Score = 642 bits (324), Expect = 0.0
Identities = 404/433 (93%)
Strand = Plus / Minus
Query: 204 atgatgatcatcgttcacgtgacgaaataccaaccagaacaaataacaaggcnnnnnnnt 263
|||||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct: 433 atgatgatcatcgttcctgtgacgaacaaccaaccagaacaaataacaaggcaaaaaaat 374
Query: 264 cgctgggctgagcaagcgccccggcaagggccctacttgatgtattgggagacccacttg 323
| |||||||||||| | | | ||||||||||||||||||||||| |||||||||||||||
Sbjct: 373 cactgggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttg 314
Query: 324 aaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccgg 383
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aaaccatcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccgg 254
Query: 384 acattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctagg 443
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 acattggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctagg 194
Query: 444 tgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgccaaggatg 503
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 193 tgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatg 134
Query: 504 agaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctccttttttgat 563
|||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 133 agaaatggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgat 74
Query: 564 tcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaacctttgcg 623
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 73 tctgcaaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcg 14
Query: 624 tagtaatccttcc 636
|| ||||||||||
Sbjct: 13 taataatccttcc 1
Score = 222 bits (112), Expect = 3e-056
Identities = 149/160 (93%), Gaps = 1/160 (0%)
Strand = Plus / Minus
Query: 33 atcttataatgcatcgcaggcaagtccttagtaaaggtcctacggaaaagcaaaagaatt 92
|||||||||||||||||| |||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 587 atcttataatgcatcgcaagcaagttcttagtaaacgtcctatggaaaagcaaaagaatt 528
Query: 93 ccaggagtttgactgacataacaaaatgttttcacgctaaagattcaacatgttccccaa 152
||||||||||| |||||||||||| |||||| || |||||||||||||||||||| |||
Sbjct: 527 tcaggagtttgattgacataacaaattgttttgacactaaagattcaacatgttcctcaa 468
Query: 153 tgttaagcactgttttttcctcttcatacccctccatgat 192
|||||||||||||||||||||||||||| |||||||||||
Sbjct: 467 tgttaagcactgttttttcctcttcata-ccctccatgat 429
>gb|CF488232.1|CF488232 POL1_48_C07.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_48_C07_A002 5', mRNA sequence
Length = 617
Score = 634 bits (320), Expect = e-180
Identities = 403/433 (93%)
Strand = Plus / Plus
Query: 204 atgatgatcatcgttcacgtgacgaaataccaaccagaacaaataacaaggcnnnnnnnt 263
|||||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct: 185 atgatgatcatcgttcctgtgacgaacaaccaaccagaacaaataacaaggcaaaaaaat 244
Query: 264 cgctgggctgagcaagcgccccggcaagggccctacttgatgtattgggagacccacttg 323
| |||||||||||| | | | ||||||||||||||||||||||| |||||||||||||||
Sbjct: 245 cactgggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttg 304
Query: 324 aaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccgg 383
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aaaccatcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccgg 364
Query: 384 acattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctagg 443
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 acattggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctagg 424
Query: 444 tgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgccaaggatg 503
|||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 425 tgataccgtagcccctcttcagaggcagcatatgggatatcaatcttgttgccaaggatg 484
Query: 504 agaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctccttttttgat 563
|||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 485 agaaatggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgat 544
Query: 564 tcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaacctttgcg 623
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 545 tctgcaaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcg 604
Query: 624 tagtaatccttcc 636
|| ||||||||||
Sbjct: 605 taataatccttcc 617
Score = 224 bits (113), Expect = 8e-057
Identities = 150/161 (93%), Gaps = 1/161 (0%)
Strand = Plus / Plus
Query: 32 aatcttataatgcatcgcaggcaagtccttagtaaaggtcctacggaaaagcaaaagaat 91
||||||||||||||||||| |||||| ||||||||| |||||| ||||||||||||||||
Sbjct: 30 aatcttataatgcatcgcaagcaagttcttagtaaacgtcctatggaaaagcaaaagaat 89
Query: 92 tccaggagtttgactgacataacaaaatgttttcacgctaaagattcaacatgttcccca 151
| ||||||||||| |||||||||||| |||||| || |||||||||||||||||||| ||
Sbjct: 90 ttcaggagtttgattgacataacaaattgttttgacactaaagattcaacatgttcctca 149
Query: 152 atgttaagcactgttttttcctcttcatacccctccatgat 192
||||||||||||||||||||||||||||| |||||||||||
Sbjct: 150 atgttaagcactgttttttcctcttcata-ccctccatgat 189
>gb|BG557945.1|BG557945 EM1_39_E11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 441
Score = 615 bits (310), Expect = e-174
Identities = 361/378 (95%)
Strand = Plus / Minus
Query: 266 ctgggctgagcaagcgccccggcaagggccctacttgatgtattgggagacccacttgaa 325
|||||||||||| | | | ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 400 ctgggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttgaa 341
Query: 326 accatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccggac 385
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 accatcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccggac 281
Query: 386 attggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtg 445
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 attggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtg 221
Query: 446 ataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgccaaggatgag 505
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 220 ataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgag 161
Query: 506 aaatggaacatttgccaaggaatcatctgacaggagagcgtccagctccttttttgattc 565
|||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct: 160 aaatggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgattc 101
Query: 566 agcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaacctttgcgta 625
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 100 tgcaaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcgta 41
Query: 626 gtaatccttccagacgcg 643
|||||||||||||||||
Sbjct: 40 ataatccttccagacgcg 23
>gb|CN128660.1|CN128660 RHOH1_30_G10.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_30_G10_A002 5', mRNA sequence
Length = 877
Score = 615 bits (310), Expect = e-174
Identities = 361/378 (95%)
Strand = Plus / Minus
Query: 266 ctgggctgagcaagcgccccggcaagggccctacttgatgtattgggagacccacttgaa 325
|||||||||||| | | | ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 866 ctgggctgagcatgtggctcggcaagggccctacttgatgtactgggagacccacttgaa 807
Query: 326 accatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccggac 385
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 accatcaccgtagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccggac 747
Query: 386 attggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtg 445
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 attggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtg 687
Query: 446 ataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgccaaggatgag 505
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 686 ataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatgag 627
Query: 506 aaatggaacatttgccaaggaatcatctgacaggagagcgtccagctccttttttgattc 565
|||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct: 626 aaatggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgattc 567
Query: 566 agcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaacctttgcgta 625
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgcaaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttgcgta 507
Query: 626 gtaatccttccagacgcg 643
|||||||||||||||||
Sbjct: 506 ataatccttccagacgcg 489
>gb|BG556861.1|BG556861 EM1_39_E11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 509
Score = 432 bits (218), Expect = e-119
Identities = 251/262 (95%)
Strand = Plus / Minus
Query: 382 ggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggccta 441
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggacattggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggccta 450
Query: 442 ggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgccaagga 501
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 449 ggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaagga 390
Query: 502 tgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctccttttttg 561
|||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||
Sbjct: 389 tgagaaatggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttg 330
Query: 562 attcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaacctttg 621
|||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 329 attctgcaaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacctttg 270
Query: 622 cgtagtaatccttccagacgcg 643
|||| |||||||||||||||||
Sbjct: 269 cgtaataatccttccagacgcg 248
>gb|CL169616.1|CL169616 104_368_10812763_148_31808_235 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10812763, DNA
sequence
Length = 715
Score = 385 bits (194), Expect = e-105
Identities = 224/234 (95%)
Strand = Plus / Plus
Query: 385 cattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggt 444
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cattggagtcaccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggt 60
Query: 445 gataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgccaaggatga 504
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 61 gataccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaaggatga 120
Query: 505 gaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctccttttttgatt 564
||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct: 121 gaaatggaacattggccaaggaatcatcagacaggagagcatcgagctccttttttgatt 180
Query: 565 cagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaacct 618
| |||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 181 ctgcaaatcgctccttgtcatatgcatctaccaggtatactacagcatcaacct 234
>gb|CD430682.1|CD430682 ETH1_20_C10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_20_C10_A002 5', mRNA sequence
Length = 624
Score = 367 bits (185), Expect = e-100
Identities = 215/225 (95%)
Strand = Plus / Minus
Query: 419 ggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatacgg 478
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 624 ggttgtgaagttgctaaggcctaggtgataccgtagctcctcttcagaggcagcatatgg 565
Query: 479 gatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgacag 538
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 564 gatatcaatcttgttgccaaggatgagaaatggaacattggccaaggaatcatcagacag 505
Query: 539 gagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctaccag 598
|||||| || ||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct: 504 gagagcatcgagctccttttttgattctgcaaatcgctccttgtcatatgcatctaccag 445
Query: 599 gtatactacagcatcaacctttgcgtagtaatccttccagacgcg 643
||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 444 gtatactacagcatcaacctttgcgtaataatccttccagacgcg 400
>gb|CD463150.1|CD463150 ETH1_42_A11.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_42_A11_A002 5', mRNA sequence
Length = 608
Score = 337 bits (170), Expect = 8e-091
Identities = 200/210 (95%)
Strand = Plus / Minus
Query: 434 aaggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgtt 493
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 608 aaggcctaggtgataccgtagctcctcttcagaggcagcatatgggatatcaatcttgtt 549
Query: 494 gccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctc 553
|||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||
Sbjct: 548 gccaaggatgagaaatggaacattggccaaggaatcatcagacaggagagcatcgagctc 489
Query: 554 cttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatc 613
|||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 488 cttttttgattctgcaaatcgctccttgtcatatgcatctaccaggtatactacagcatc 429
Query: 614 aacctttgcgtagtaatccttccagacgcg 643
|||||||||||| |||||||||||||||||
Sbjct: 428 aacctttgcgtaataatccttccagacgcg 399
>gb|CD432713.1|CD432713 ETH1_25_F07.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_25_F07_A002 5', mRNA sequence
Length = 642
Score = 315 bits (159), Expect = 3e-084
Identities = 192/203 (94%)
Strand = Plus / Minus
Query: 441 aggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgccaagg 500
||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 642 aggtgatcccgtagctcctcttcagaggcagcatatgggatatcaatcttgttgccaagg 583
Query: 501 atgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcctttttt 560
||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||
Sbjct: 582 atgagaaatggaacattggccaaggaatcatcagacaggagagcatcgagctcctttttt 523
Query: 561 gattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaaccttt 620
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 522 gattctgcaaatcgctccttgtcatatgcatctaccaggtatactacagcatcaaccttt 463
Query: 621 gcgtagtaatccttccagacgcg 643
||||| |||||||||||||||||
Sbjct: 462 gcgtaataatccttccagacgcg 440
>gb|CD428992.1|CD428992 ETH1_1_A07.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_1_A07_A002 5', mRNA sequence
Length = 262
Score = 224 bits (113), Expect = 8e-057
Identities = 150/161 (93%), Gaps = 1/161 (0%)
Strand = Plus / Minus
Query: 32 aatcttataatgcatcgcaggcaagtccttagtaaaggtcctacggaaaagcaaaagaat 91
||||||||||||||||||| |||||| ||||||||| |||||| ||||||||||||||||
Sbjct: 167 aatcttataatgcatcgcaagcaagttcttagtaaacgtcctatggaaaagcaaaagaat 108
Query: 92 tccaggagtttgactgacataacaaaatgttttcacgctaaagattcaacatgttcccca 151
| ||||||||||| |||||||||||| |||||| || |||||||||||||||||||| ||
Sbjct: 107 ttcaggagtttgattgacataacaaattgttttgacactaaagattcaacatgttcctca 48
Query: 152 atgttaagcactgttttttcctcttcatacccctccatgat 192
||||||||||||||||||||||||||||| |||||||||||
Sbjct: 47 atgttaagcactgttttttcctcttcata-ccctccatgat 8
>gb|BE366246.1|BE366246 PI1_31_B08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 685
Score = 202 bits (102), Expect = 3e-050
Identities = 279/338 (82%)
Strand = Plus / Minus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| || || |||||||| || ||||||||||| ||||||||||||||||| |||
Sbjct: 495 ttgatgtactgtgacacccacttaaacccatcgccgtaccccatcttgcgaacaacgctg 436
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| ||||| || || ||||| || || ||||| ||||| ||||||||||| ||
Sbjct: 435 cacatgaacacctccagggggcggacgttagactcgcccaggttaaccttgcccttgcca 376
Query: 420 gttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatacggg 479
|| ||||||||||| || || | |||||| || || ||||| || || || ||||| |||
Sbjct: 375 gtggtgaagttgctcagccccatgtgataacggagttcctcctctgaagcggcataaggg 316
Query: 480 atatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgacagg 539
|| || |||||||| || ||||| || ||||| ||| | |||| ||| |||||||| |||
Sbjct: 315 atgtcgatcttgttccccaggatcaggaatgggacagtggccagggagtcatctgatagg 256
Query: 540 agagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctaccagg 599
|| || || |||||||| ||||| |||||||| |||||||| ||||| ||||| || |||
Sbjct: 255 agcgcatctagctccttctttgactcagcaaaccgctccttgtcataggcatccacaagg 196
Query: 600 tatactacagcatcaacctttgcgtagtaatccttcca 637
|| || || ||||| ||||| || ||||||||||||||
Sbjct: 195 tagaccactgcatccaccttagcatagtaatccttcca 158
>gb|BG410710.1|BG410710 EM1_25_A05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 553
Score = 202 bits (102), Expect = 3e-050
Identities = 279/338 (82%)
Strand = Plus / Minus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| || || |||||||| || ||||||||||| ||||||||||||||||| |||
Sbjct: 462 ttgatgtactgtgacacccacttaaacccatcgccgtaccccatcttgcgaacaacgctg 403
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| ||||| || || ||||| || || ||||| ||||| ||||||||||| ||
Sbjct: 402 cacatgaacacctccagggggcggacgttagactcgcccaggttaaccttgcccttgcca 343
Query: 420 gttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatacggg 479
|| ||||||||||| || || | |||||| || || ||||| || || || ||||| |||
Sbjct: 342 gtggtgaagttgctcagccccatgtgataacggagttcctcctctgaagcggcataaggg 283
Query: 480 atatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgacagg 539
|| || |||||||| || ||||| || ||||| ||| | |||| ||| |||||||| |||
Sbjct: 282 atgtcgatcttgttccccaggatcaggaatgggacagtggccagggagtcatctgatagg 223
Query: 540 agagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctaccagg 599
|| || || |||||||| ||||| |||||||| |||||||| ||||| ||||| || |||
Sbjct: 222 agcgcatctagctccttctttgactcagcaaaccgctccttgtcataggcatccacaagg 163
Query: 600 tatactacagcatcaacctttgcgtagtaatccttcca 637
|| || || ||||| ||||| || ||||||||||||||
Sbjct: 162 tagaccactgcatccaccttagcatagtaatccttcca 125
>gb|BG739419.1|BG739419 EM1_82_F12.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 666
Score = 202 bits (102), Expect = 3e-050
Identities = 279/338 (82%)
Strand = Plus / Minus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| || || |||||||| || ||||||||||| ||||||||||||||||| |||
Sbjct: 495 ttgatgtactgtgacacccacttaaacccatcgccgtaccccatcttgcgaacaacgctg 436
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| ||||| || || ||||| || || ||||| ||||| ||||||||||| ||
Sbjct: 435 cacatgaacacctccagggggcggacgttagactcgcccaggttaaccttgcccttgcca 376
Query: 420 gttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatacggg 479
|| ||||||||||| || || | |||||| || || ||||| || || || ||||| |||
Sbjct: 375 gtggtgaagttgctcagccccatgtgataacggagttcctcctctgaagcggcataaggg 316
Query: 480 atatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgacagg 539
|| || |||||||| || ||||| || ||||| ||| | |||| ||| |||||||| |||
Sbjct: 315 atgtcgatcttgttccccaggatcaggaatgggacagtggccagggagtcatctgatagg 256
Query: 540 agagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctaccagg 599
|| || || |||||||| ||||| |||||||| |||||||| ||||| ||||| || |||
Sbjct: 255 agcgcatctagctccttctttgactcagcaaaccgctccttgtcataggcatccacaagg 196
Query: 600 tatactacagcatcaacctttgcgtagtaatccttcca 637
|| || || ||||| ||||| || ||||||||||||||
Sbjct: 195 tagaccactgcatccaccttagcatagtaatccttcca 158
>gb|BG932934.1|BG932934 DG1_69_B08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 661
Score = 202 bits (102), Expect = 3e-050
Identities = 279/338 (82%)
Strand = Plus / Minus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| || || |||||||| || ||||||||||| ||||||||||||||||| |||
Sbjct: 479 ttgatgtactgtgacacccacttaaacccatcgccgtaccccatcttgcgaacaacgctg 420
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| ||||| || || ||||| || || ||||| ||||| ||||||||||| ||
Sbjct: 419 cacatgaacacctccagggggcggacgttagactcgcccaggttaaccttgcccttgcca 360
Query: 420 gttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatacggg 479
|| ||||||||||| || || | |||||| || || ||||| || || || ||||| |||
Sbjct: 359 gtggtgaagttgctcagccccatgtgataacggagttcctcctctgaagcggcataaggg 300
Query: 480 atatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgacagg 539
|| || |||||||| || ||||| || ||||| ||| | |||| ||| |||||||| |||
Sbjct: 299 atgtcgatcttgttccccaggatcaggaatgggacagtggccagggagtcatctgatagg 240
Query: 540 agagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctaccagg 599
|| || || |||||||| ||||| |||||||| |||||||| ||||| ||||| || |||
Sbjct: 239 agcgcatctagctccttctttgactcagcaaaccgctccttgtcataggcatccacaagg 180
Query: 600 tatactacagcatcaacctttgcgtagtaatccttcca 637
|| || || ||||| ||||| || ||||||||||||||
Sbjct: 179 tagaccactgcatccaccttagcatagtaatccttcca 142
>gb|BI074494.1|BI074494 IP1_16_G05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 655
Score = 202 bits (102), Expect = 3e-050
Identities = 279/338 (82%)
Strand = Plus / Minus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| || || |||||||| || ||||||||||| ||||||||||||||||| |||
Sbjct: 463 ttgatgtactgtgacacccacttaaacccatcgccgtaccccatcttgcgaacaacgctg 404
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| ||||| || || ||||| || || ||||| ||||| ||||||||||| ||
Sbjct: 403 cacatgaacacctccagggggcggacgttagactcgcccaggttaaccttgcccttgcca 344
Query: 420 gttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatacggg 479
|| ||||||||||| || || | |||||| || || ||||| || || || ||||| |||
Sbjct: 343 gtggtgaagttgctcagccccatgtgataacggagttcctcctctgaagcggcataaggg 284
Query: 480 atatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgacagg 539
|| || |||||||| || ||||| || ||||| ||| | |||| ||| |||||||| |||
Sbjct: 283 atgtcgatcttgttccccaggatcaggaatgggacagtggccagggagtcatctgatagg 224
Query: 540 agagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctaccagg 599
|| || || |||||||| ||||| |||||||| |||||||| ||||| ||||| || |||
Sbjct: 223 agcgcatctagctccttctttgactcagcaaaccgctccttgtcataggcatccacaagg 164
Query: 600 tatactacagcatcaacctttgcgtagtaatccttcca 637
|| || || ||||| ||||| || ||||||||||||||
Sbjct: 163 tagaccactgcatccaccttagcatagtaatccttcca 126
>gb|CD221229.1|CD221229 CCC1_74_E08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_74_E08_A007 3', mRNA sequence
Length = 607
Score = 202 bits (102), Expect = 3e-050
Identities = 279/338 (82%)
Strand = Plus / Minus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| || || |||||||| || ||||||||||| ||||||||||||||||| |||
Sbjct: 410 ttgatgtactgtgacacccacttaaacccatcgccgtaccccatcttgcgaacaacgctg 351
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| ||||| || || ||||| || || ||||| ||||| ||||||||||| ||
Sbjct: 350 cacatgaacacctccagggggcggacgttagactcgcccaggttaaccttgcccttgcca 291
Query: 420 gttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatacggg 479
|| ||||||||||| || || | |||||| || || ||||| || || || ||||| |||
Sbjct: 290 gtggtgaagttgctcagccccatgtgataacggagttcctcctctgaagcggcataaggg 231
Query: 480 atatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgacagg 539
|| || |||||||| || ||||| || ||||| ||| | |||| ||| |||||||| |||
Sbjct: 230 atgtcgatcttgttccccaggatcaggaatgggacagtggccagggagtcatctgatagg 171
Query: 540 agagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctaccagg 599
|| || || |||||||| ||||| |||||||| |||||||| ||||| ||||| || |||
Sbjct: 170 agcgcatctagctccttctttgactcagcaaaccgctccttgtcataggcatccacaagg 111
Query: 600 tatactacagcatcaacctttgcgtagtaatccttcca 637
|| || || ||||| ||||| || ||||||||||||||
Sbjct: 110 tagaccactgcatccaccttagcatagtaatccttcca 73
>gb|CN128667.1|CN128667 RHOH1_30_H05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_30_H05_A002 5', mRNA sequence
Length = 841
Score = 202 bits (102), Expect = 3e-050
Identities = 279/338 (82%)
Strand = Plus / Minus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| || || |||||||| || ||||||||||| ||||||||||||||||| |||
Sbjct: 708 ttgatgtactgtgacacccacttaaacccatcgccgtaccccatcttgcgaacaacgctg 649
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| ||||| || || ||||| || || ||||| ||||| ||||||||||| ||
Sbjct: 648 cacatgaacacctccagggggcggacgttagactcgcccaggttaaccttgcccttgcca 589
Query: 420 gttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatacggg 479
|| ||||||||||| || || | |||||| || || ||||| || || || ||||| |||
Sbjct: 588 gtggtgaagttgctcagccccatgtgataacggagttcctcctctgaagcggcataaggg 529
Query: 480 atatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgacagg 539
|| || |||||||| || ||||| || ||||| ||| | |||| ||| |||||||| |||
Sbjct: 528 atgtcgatcttgttccccaggatcaggaatgggacagtggccagggagtcatctgatagg 469
Query: 540 agagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctaccagg 599
|| || || |||||||| ||||| |||||||| |||||||| ||||| ||||| || |||
Sbjct: 468 agcgcatctagctccttctttgactcagcaaaccgctccttgtcataggcatccacaagg 409
Query: 600 tatactacagcatcaacctttgcgtagtaatccttcca 637
|| || || ||||| ||||| || ||||||||||||||
Sbjct: 408 tagaccactgcatccaccttggcatagtaatccttcca 371
>gb|BG556535.1|BG556535 EM1_38_D10.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 408
Score = 196 bits (99), Expect = 2e-048
Identities = 267/323 (82%)
Strand = Plus / Minus
Query: 315 acccacttgaaaccatcgccgtagcccatcttgcgaacaacactgcacatgaaaacctca 374
|||||||| || ||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct: 404 acccacttaaacccatcgccgtaccccatcttgcgaacaacgctgcacatgaacacctcc 345
Query: 375 agtggccggacattggagtcgccaaggttgaccttgcccttcccggttgtgaagttgcta 434
|| || ||||| || || ||||| ||||| ||||||||||| || || |||||||||||
Sbjct: 344 agggggcggacgttagactcgcccaggttaaccttgcccttgccagtggtgaagttgctc 285
Query: 435 aggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttg 494
|| || | |||||| || || ||||| || || || ||||| ||||| || ||||||||
Sbjct: 284 agccccatgtgataacggagttcctcctctgaagcggcataagggatgtcgatcttgttc 225
Query: 495 ccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctcc 554
|| ||||| || ||||| ||| | |||| ||| |||||||| ||||| || || ||||||
Sbjct: 224 cccaggatcaggaatgggacagtggccagggagtcatctgataggagcgcatctagctcc 165
Query: 555 ttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatca 614
|| ||||| |||||||| |||||||| ||||| ||||| || ||||| || || |||||
Sbjct: 164 ttctttgactcagcaaaccgctccttgtcataggcatccacaaggtagaccactgcatcc 105
Query: 615 acctttgcgtagtaatccttcca 637
||||| || ||||||||||||||
Sbjct: 104 accttagcatagtaatccttcca 82
>gb|CN144412.1|CN144412 WOUND1_22_C06.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_22_C06_A002 3', mRNA sequence
Length = 720
Score = 194 bits (98), Expect = 7e-048
Identities = 278/338 (82%)
Strand = Plus / Minus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| || || |||||||| || ||||||||||| ||||||||||||||||| |||
Sbjct: 493 ttgatgtactgtgacacccacttaaacccatcgccgtaccccatcttgcgaacaacgctg 434
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| ||||| || || ||||| || || ||||| ||||| ||||||||||| ||
Sbjct: 433 cacatgaacacctccagggggcggacgttagactcgcccaggttaaccttgcccttgcca 374
Query: 420 gttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatacggg 479
|| ||||||||||| | || | |||||| || || ||||| || || || ||||| |||
Sbjct: 373 gtggtgaagttgctcaaccccatgtgataacggagttcctcctctgaagcggcataaggg 314
Query: 480 atatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgacagg 539
|| || |||||||| || ||||| || ||||| ||| | |||| ||| |||||||| |||
Sbjct: 313 atgtcgatcttgttccccaggatcaggaatgggacagtggccagggagtcatctgatagg 254
Query: 540 agagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctaccagg 599
|| || || |||||||| ||||| |||||||| |||||||| ||||| ||||| || |||
Sbjct: 253 agcgcatctagctccttctttgactcagcaaaccgctccttgtcataggcatccacaagg 194
Query: 600 tatactacagcatcaacctttgcgtagtaatccttcca 637
|| || || ||||| ||||| || ||||||||||||||
Sbjct: 193 tagaccactgcatccaccttagcatagtaatccttcca 156
>gb|CN144473.1|CN144473 WOUND1_22_C06.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_22_C06_A002 5', mRNA sequence
Length = 863
Score = 194 bits (98), Expect = 7e-048
Identities = 278/338 (82%)
Strand = Plus / Minus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| || || |||||||| || ||||||||||| ||||||||||||||||| |||
Sbjct: 713 ttgatgtactgtgacacccacttaaacccatcgccgtaccccatcttgcgaacaacgctg 654
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| ||||| || || ||||| || || ||||| ||||| ||||||||||| ||
Sbjct: 653 cacatgaacacctccagggggcggacgttagactcgcccaggttaaccttgcccttgcca 594
Query: 420 gttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatacggg 479
|| ||||||||||| | || | |||||| || || ||||| || || || ||||| |||
Sbjct: 593 gtggtgaagttgctcaaccccatgtgataacggagttcctcctctgaagcggcataaggg 534
Query: 480 atatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgacagg 539
|| || |||||||| || ||||| || ||||| ||| | |||| ||| |||||||| |||
Sbjct: 533 atgtcgatcttgttccccaggatcaggaatgggacagtggccagggagtcatctgatagg 474
Query: 540 agagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctaccagg 599
|| || || |||||||| ||||| |||||||| |||||||| ||||| ||||| || |||
Sbjct: 473 agcgcatctagctccttctttgactcagcaaaccgctccttgtcataggcatccacaagg 414
Query: 600 tatactacagcatcaacctttgcgtagtaatccttcca 637
|| || || ||||| ||||| || ||||||||||||||
Sbjct: 413 tagaccactgcatccaccttagcatagtaatccttcca 376
>gb|CN128576.1|CN128576 RHOH1_30_H05.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_30_H05_A002 3', mRNA sequence
Length = 662
Score = 186 bits (94), Expect = 2e-045
Identities = 277/338 (81%)
Strand = Plus / Minus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| || || |||||||| || ||||||||||| ||||||||||||||||| |||
Sbjct: 470 ttgatgtactgtgacacccacttaaacccatcgccgtaccccatcttgcgaacaacgctg 411
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| ||||| || || ||||| || || ||||| ||||| ||||||||||| ||
Sbjct: 410 cacatgaacacctccagggggcggacgttagactcgcccaggttaaccttgcccttgcca 351
Query: 420 gttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatacggg 479
| ||||||||||| || || | |||||| || || ||||| || || || ||||| ||
Sbjct: 350 atggtgaagttgctcagccccatgtgataacggagttcctcctctgaagcggcataaagg 291
Query: 480 atatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgacagg 539
|| || |||||||| || ||||| || ||||| ||| | |||| ||| |||||||| |||
Sbjct: 290 atgtcgatcttgttccccaggatcaggaatgggacagtggccagggagtcatctgatagg 231
Query: 540 agagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctaccagg 599
|| || || |||||||| ||||| |||||||| |||||||| ||||| ||||| || |||
Sbjct: 230 agcgcatctagctccttctttgactcagcaaaccgctccttgtcataagcatccacaagg 171
Query: 600 tatactacagcatcaacctttgcgtagtaatccttcca 637
|| || || ||||| ||||| || ||||||||||||||
Sbjct: 170 taaaccactgcatccaccttggcatagtaatccttcca 133
>gb|AW677370.1|AW677370 DG1_6_G12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 554
Score = 155 bits (78), Expect = 6e-036
Identities = 103/110 (93%), Gaps = 1/110 (0%)
Strand = Plus / Minus
Query: 534 gacaggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatct 593
||||||||||| || ||||||||||| ||||| |||||||||||||| ||||| ||||||
Sbjct: 551 gacaggagagcatcgagctccttttt-gattctgcaaatcgctccttgtcatatgcatct 493
Query: 594 accaggtatactacagcatcaacctttgcgtagtaatccttccagacgcg 643
|||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 492 accaggtatactacagcatcaacctttgcgtaataatccttccagacgcg 443
>gb|BI140327.1|BI140327 IP1_52_A03.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 270
Score = 153 bits (77), Expect = 2e-035
Identities = 113/125 (90%)
Strand = Plus / Minus
Query: 59 cttagtaaaggtcctacggaaaagcaaaagaattccaggagtttgactgacataacaaaa 118
|||| |||| |||||| |||||||||||| |||| ||||||||||| ||||||||||||
Sbjct: 266 cttaataaacgtcctatggaaaagcaaaaaaatttcaggagtttgattgacataacaaat 207
Query: 119 tgttttcacgctaaagattcaacatgttccccaatgttaagcactgttttttcctcttca 178
|||||| || ||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 206 tgttttgacactaaaaattcaacatgttcctcaatggtaagcactgttttttcctcttca 147
Query: 179 taccc 183
|||||
Sbjct: 146 taccc 142
Score = 113 bits (57), Expect = 2e-023
Identities = 116/138 (84%)
Strand = Plus / Minus
Query: 204 atgatgatcatcgttcacgtgacgaaataccaaccagaacaaataacaaggcnnnnnnnt 263
|||| ||||||||||| | |||||| ||||||||||||||||||||||| |
Sbjct: 138 atgaagatcatcgttcctgggacgaacaaccaaccagaacaaataacaagggaaaaaaat 79
Query: 264 cgctgggctgagcaagcgccccggcaagggccctacttgatgtattgggagacccacttg 323
| ||||||||| || | | | ||||||||||||||||||||||| |||||||||||||||
Sbjct: 78 cactgggctgaacatgtggctcggcaagggccctacttgatgtactgggagacccacttg 19
Query: 324 aaaccatcgccgtagccc 341
|||||||| |||||||||
Sbjct: 18 aaaccatcaccgtagccc 1
>gb|BM328253.1|BM328253 PIC1_22_H06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 649
Score = 153 bits (77), Expect = 2e-035
Identities = 280/345 (81%), Gaps = 2/345 (0%)
Strand = Plus / Minus
Query: 298 acttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacac 357
|||||||||| || || | ||| ||||| || || || |||||||||||||| || ||||
Sbjct: 344 acttgatgtactgagacatccatttgaagccttcaccatagcccatcttgcgcaccacac 285
Query: 358 tgcacatgaaaacctcaagtggccggacattggagtc-gccaaggttgaccttgcccttc 416
|||||||||| | ||| || || || |||||||| || |||||| || || |||||||||
Sbjct: 284 tgcacatgaagatctccagggggcgaacattggaatcagccaag-ttcacgttgcccttc 226
Query: 417 ccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatac 476
|| |||||||||||||| ||||| |||| |||||||| ||||| || || || || ||
Sbjct: 225 cccgttgtgaagttgctcaggccaaggtagtaccgcagttcctcctctgaagccgcgtat 166
Query: 477 gggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgac 536
||||| |||||||||||||| || ||||| || ||||| ||||| | ||| |||||||
Sbjct: 165 gggatgtcaatcttgttgcccagtatgaggaaaggaacgtttgcaagggagtcatctgct 106
Query: 537 aggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctacc 596
|| || || || ||||| || ||||| || ||||| || ||||| ||| ||||| |||
Sbjct: 105 agaagcgcatcaagctctttctttgactcggcaaaccgttccttgtcaacagcatccacc 46
Query: 597 aggtatactacagcatcaacctttgcgtagtaatccttccagacg 641
| ||| || |||||||||||||| |||||||| ||||||||||||
Sbjct: 45 aagtacacaacagcatcaaccttggcgtagtagtccttccagacg 1
>gb|CF488544.1|CF488544 POL1_50_D11.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_50_D11_A002 5', mRNA sequence
Length = 613
Score = 153 bits (77), Expect = 2e-035
Identities = 253/309 (81%), Gaps = 2/309 (0%)
Strand = Plus / Minus
Query: 336 tagcccatcttgcgaacaacactgcacatgaaaacctcaagtggccggacattggagtc- 394
|||||||||||||| || |||||||||||||| | ||| || || || |||||||| ||
Sbjct: 612 tagcccatcttgcgcaccacactgcacatgaagatctccagggggcgaacattggaatca 553
Query: 395 gccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgataccgcag 454
|||||| || || ||||||||||| |||||||||||||| ||||| |||| ||||||||
Sbjct: 552 gccaag-ttcacgttgcccttccccgttgtgaagttgctcaggccaaggtagtaccgcag 494
Query: 455 ctcctcttcagaggcagcatacgggatatcaatcttgttgccaaggatgagaaatggaac 514
||||| || || || || || ||||| |||||||||||||| || ||||| || |||||
Sbjct: 493 ttcctcctctgaagccgcgtatgggatgtcaatcttgttgcccagcatgaggaaaggaac 434
Query: 515 atttgccaaggaatcatctgacaggagagcgtccagctccttttttgattcagcaaatcg 574
||||| | ||| ||||||| || || || || ||||| || ||||| || ||||| ||
Sbjct: 433 gtttgcaagggagtcatctgctagaagcgcatcaagctctttctttgactcggcaaaccg 374
Query: 575 ctccttatcatacgcatctaccaggtatactacagcatcaacctttgcgtagtaatcctt 634
||||| ||| ||||| |||| ||| || |||||||||||||| |||||||| |||||
Sbjct: 373 ttccttgtcaacagcatccaccaagtacacaacagcatcaaccttggcgtagtagtcctt 314
Query: 635 ccagacgcg 643
|||||||||
Sbjct: 313 ccagacgcg 305
>gb|BG558927.1|BG558927 RHIZ2_52_D10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 583
Score = 143 bits (72), Expect = 2e-032
Identities = 269/332 (81%), Gaps = 2/332 (0%)
Strand = Plus / Minus
Query: 298 acttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacac 357
|||||||||| || || | ||| ||||| || || || |||||||||||||| || ||||
Sbjct: 333 acttgatgtactgagacatccatttgaagccttcaccatagcccatcttgcgcaccacac 274
Query: 358 tgcacatgaaaacctcaagtggccggacattggagtc-gccaaggttgaccttgcccttc 416
|||||||||| | ||| || || || || |||||||| |||||| || || |||||||||
Sbjct: 273 tgcacatgaagatctccagggggcgaacgttggagtcagccaag-ttcacgttgcccttc 215
Query: 417 ccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatac 476
|| |||||||||||||| ||||| |||| |||||||| ||||| || || || || ||
Sbjct: 214 cccgttgtgaagttgctcaggccaaggtagtaccgcagttcctcctctgaagccgcgtat 155
Query: 477 gggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgac 536
||||| |||||||||||||| || ||||| || ||||| ||||| | ||| |||||||
Sbjct: 154 gggatgtcaatcttgttgcccagtatgaggaaaggaacgtttgcaagggagtcatctgct 95
Query: 537 aggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctacc 596
|| ||||| || ||||| || ||||| || ||||| || ||||| ||| ||||| |||
Sbjct: 94 agaagagcatcaagctctttctttgactcggcaaaccgttccttgtcaacagcatccacc 35
Query: 597 aggtatactacagcatcaacctttgcgtagta 628
| ||| || |||||||||||||| ||||||||
Sbjct: 34 aagtacacaacagcatcaaccttggcgtagta 3
>gb|BG559243.1|BG559243 RHIZ2_52_D10.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 561
Score = 143 bits (72), Expect = 2e-032
Identities = 245/300 (81%), Gaps = 2/300 (0%)
Strand = Plus / Minus
Query: 345 ttgcgaacaacactgcacatgaaaacctcaagtggccggacattggagtc-gccaaggtt 403
||||| || |||||||||||||| | ||| || || || || |||||||| |||||| ||
Sbjct: 561 ttgcgcaccacactgcacatgaagatctccagggggcgaacgttggagtcagccaag-tt 503
Query: 404 gaccttgcccttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttc 463
|| ||||||||||| |||||||||||||| ||||| |||| |||||||| ||||| ||
Sbjct: 502 cacgttgcccttccccgttgtgaagttgctcaggccaaggtagtaccgcagttcctcctc 443
Query: 464 agaggcagcatacgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaa 523
|| || || || ||||| |||||||||||||| || ||||| || ||||| ||||| |
Sbjct: 442 tgaagccgcgtatgggatgtcaatcttgttgcccagtatgaggaaaggaacgtttgcaag 383
Query: 524 ggaatcatctgacaggagagcgtccagctccttttttgattcagcaaatcgctccttatc 583
||| ||||||| || ||||| || ||||| || ||||| || ||||| || ||||| ||
Sbjct: 382 ggagtcatctgctagaagagcatcaagctctttctttgactcggcaaaccgttccttgtc 323
Query: 584 atacgcatctaccaggtatactacagcatcaacctttgcgtagtaatccttccagacgcg 643
| ||||| |||| ||| || |||||||||||||| |||||||| ||||||||||||||
Sbjct: 322 aacagcatccaccaagtacacaacagcatcaaccttggcgtagtagtccttccagacgcg 263
>gb|AW677237.1|AW677237 DG1_6_G12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 234
Score = 135 bits (68), Expect = 6e-030
Identities = 98/108 (90%)
Strand = Plus / Minus
Query: 76 ggaaaagcaaaagaattccaggagtttgactgacataacaaaatgttttcacgctaaaga 135
|||||||||||| |||| |||| |||||| |||||||||||| |||||| || ||||| |
Sbjct: 234 ggaaaagcaaaaaaatttcaggggtttgattgacataacaaattgttttgacactaaaaa 175
Query: 136 ttcaacatgttccccaatgttaagcactgttttttcctcttcataccc 183
||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 174 ttcaacatgttcctcaatgttaagcactgttttttccttttcataccc 127
Score = 67.9 bits (34), Expect = 1e-009
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 285 cggcaagggccctacttgatgtattgggagacccacttgaaa 326
||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 42 cggcaagggccctacttgatgtactgggaaacccacttgaaa 1
>gb|BE361076.1|BE361076 DG1_69_B08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 584
Score = 129 bits (65), Expect = 3e-028
Identities = 200/245 (81%)
Strand = Plus / Minus
Query: 393 tcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgataccgc 452
||||| ||||| ||||||||||| || || ||||||||||| || || | |||||| ||
Sbjct: 560 tcgcccaggttaaccttgcccttgccagtggtgaagttgctcagccccatgtgataacgg 501
Query: 453 agctcctcttcagaggcagcatacgggatatcaatcttgttgccaaggatgagaaatgga 512
|| ||||| || || || ||||| ||||| || |||||||| || ||||| || |||||
Sbjct: 500 agttcctcctctgaagcggcataagggatgtcgatcttgttccccaggatcaggaatggg 441
Query: 513 acatttgccaaggaatcatctgacaggagagcgtccagctccttttttgattcagcaaat 572
||| | |||| ||| |||||||| ||||| || || |||||||| ||||| ||||||||
Sbjct: 440 acagtggccagggagtcatctgataggagcgcatctagctccttctttgactcagcaaac 381
Query: 573 cgctccttatcatacgcatctaccaggtatactacagcatcaacctttgcgtagtaatcc 632
|||||||| ||||| ||||| || ||||| || || ||||| ||||| || |||||||||
Sbjct: 380 cgctccttgtcataggcatccacaaggtagaccactgcatccaccttagcatagtaatcc 321
Query: 633 ttcca 637
|||||
Sbjct: 320 ttcca 316
>gb|BE366220.1|BE366220 PI1_31_B08.b2_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 595
Score = 129 bits (65), Expect = 3e-028
Identities = 200/245 (81%)
Strand = Plus / Minus
Query: 393 tcgccaaggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgataccgc 452
||||| ||||| ||||||||||| || || ||||||||||| || || | |||||| ||
Sbjct: 579 tcgcccaggttaaccttgcccttgccagtggtgaagttgctcagccccatgtgataacgg 520
Query: 453 agctcctcttcagaggcagcatacgggatatcaatcttgttgccaaggatgagaaatgga 512
|| ||||| || || || ||||| ||||| || |||||||| || ||||| || |||||
Sbjct: 519 agttcctcctctgaagcggcataagggatgtcgatcttgttccccaggatcaggaatggg 460
Query: 513 acatttgccaaggaatcatctgacaggagagcgtccagctccttttttgattcagcaaat 572
||| | |||| ||| |||||||| ||||| || || |||||||| ||||| ||||||||
Sbjct: 459 acagtggccagggagtcatctgataggagcgcatctagctccttctttgactcagcaaac 400
Query: 573 cgctccttatcatacgcatctaccaggtatactacagcatcaacctttgcgtagtaatcc 632
|||||||| ||||| ||||| || ||||| || || ||||| ||||| || |||||||||
Sbjct: 399 cgctccttgtcataggcatccacaaggtagaccactgcatccaccttagcatagtaatcc 340
Query: 633 ttcca 637
|||||
Sbjct: 339 ttcca 335
>gb|BG739586.1|BG739586 EM1_82_F12.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 608
Score = 125 bits (63), Expect = 5e-027
Identities = 195/239 (81%)
Strand = Plus / Minus
Query: 399 aggttgaccttgcccttcccggttgtgaagttgctaaggcctaggtgataccgcagctcc 458
||||| ||||||||||| || || ||||||||||| || || | |||||| || || |||
Sbjct: 578 aggttaaccttgcccttgccagtggtgaagttgctcagccccatgtgataacggagttcc 519
Query: 459 tcttcagaggcagcatacgggatatcaatcttgttgccaaggatgagaaatggaacattt 518
|| || || || ||||| ||||| || |||||||| || ||||| || ||||| ||| |
Sbjct: 518 tcctctgaagcggcataagggatgtcgatcttgttccccaggatcaggaatgggacagtg 459
Query: 519 gccaaggaatcatctgacaggagagcgtccagctccttttttgattcagcaaatcgctcc 578
|||| ||| |||||||| ||||| || || |||||||| ||||| |||||||| ||||||
Sbjct: 458 gccagggagtcatctgataggagcgcatctagctccttctttgactcagcaaaccgctcc 399
Query: 579 ttatcatacgcatctaccaggtatactacagcatcaacctttgcgtagtaatccttcca 637
|| ||||| ||||| || ||||| || || ||||| ||||| || ||||||||||||||
Sbjct: 398 ttgtcataggcatccacaaggtagaccactgcatccaccttagcatagtaatccttcca 340
>gb|CW316112.1|CW316112 104_807_11472721_148_35844_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472721, DNA
sequence
Length = 701
Score = 123 bits (62), Expect = 2e-026
Identities = 259/322 (80%), Gaps = 2/322 (0%)
Strand = Plus / Plus
Query: 298 acttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacac 357
|||||||||| || || | ||| ||||| || || || |||||||||||||| || ||||
Sbjct: 366 acttgatgtactgagacatccatttgaagccttcaccatagcccatcttgcgcaccacac 425
Query: 358 tgcacatgaaaacctcaagtggccggacattggagtc-gccaaggttgaccttgcccttc 416
|||||||||| | ||| || || || |||||||| || |||||| || || |||||||||
Sbjct: 426 tgcacatgaagatctccagggggcgaacattggaatcagccaag-ttcacgttgcccttc 484
Query: 417 ccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatac 476
|| |||||||||||||| ||||| |||| |||||||| ||||| || || || || ||
Sbjct: 485 cccgttgtgaagttgctcaggccaaggtagtaccgcagttcctcctctgaagccgcgtat 544
Query: 477 gggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgac 536
||||| |||||||||||||| || ||||| || ||||| ||||| | ||| |||||||
Sbjct: 545 gggatgtcaatcttgttgcccagtatgaggaaaggaacgtttgcaagggagtcatctgct 604
Query: 537 aggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctacc 596
|| || || || ||||| || ||||| || ||||| || ||||| ||| ||||| |||
Sbjct: 605 agaagcgcatcaagctctttctttgactcggcaaaccgttccttgtcaacagcatccacc 664
Query: 597 aggtatactacagcatcaacct 618
| ||| || |||||||||||||
Sbjct: 665 aagtacacaacagcatcaacct 686
>gb|CW398305.1|CW398305 fsbb001f087k23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f087k23, DNA
sequence
Length = 703
Score = 123 bits (62), Expect = 2e-026
Identities = 259/322 (80%), Gaps = 2/322 (0%)
Strand = Plus / Minus
Query: 298 acttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacac 357
|||||||||| || || | ||| ||||| || || || |||||||||||||| || ||||
Sbjct: 340 acttgatgtactgagacatccatttgaagccttcaccatagcccatcttgcgcaccacac 281
Query: 358 tgcacatgaaaacctcaagtggccggacattggagtc-gccaaggttgaccttgcccttc 416
|||||||||| | ||| || || || |||||||| || |||||| || || |||||||||
Sbjct: 280 tgcacatgaagatctccagggggcgaacattggaatcagccaag-ttcacgttgcccttc 222
Query: 417 ccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatac 476
|| |||||||||||||| ||||| |||| |||||||| ||||| || || || || ||
Sbjct: 221 cccgttgtgaagttgctcaggccaaggtagtaccgcagttcctcctctgaagccgcgtat 162
Query: 477 gggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgac 536
||||| |||||||||||||| || ||||| || ||||| ||||| | ||| |||||||
Sbjct: 161 gggatgtcaatcttgttgcccagtatgaggaaaggaacgtttgcaagggagtcatctgct 102
Query: 537 aggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctacc 596
|| || || || ||||| || ||||| || ||||| || ||||| ||| ||||| |||
Sbjct: 101 agaagcgcatcaagctctttctttgactcggcaaaccgttccttgtcaacagcatccacc 42
Query: 597 aggtatactacagcatcaacct 618
| ||| || |||||||||||||
Sbjct: 41 aagtacacaacagcatcaacct 20
>gb|CF770226.1|CF770226 DSBF1_6_A09.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_6_A09_A010 3', mRNA sequence
Length = 625
Score = 123 bits (62), Expect = 2e-026
Identities = 259/322 (80%), Gaps = 2/322 (0%)
Strand = Plus / Minus
Query: 298 acttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacac 357
|||||||||| || || | ||| ||||| || || || |||||||||||||| || ||||
Sbjct: 321 acttgatgtactgagacatccatttgaagccttcaccatagcccatcttgcgcaccacac 262
Query: 358 tgcacatgaaaacctcaagtggccggacattggagtc-gccaaggttgaccttgcccttc 416
|||||||||| | ||| || || || |||||||| || |||||| || || |||||||||
Sbjct: 261 tgcacatgaagatctccagggggcgaacattggaatcagccaag-ttcacgttgcccttc 203
Query: 417 ccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatac 476
|| |||||||||||||| ||||| |||| |||||||| ||||| || || || || ||
Sbjct: 202 cccgttgtgaagttgctcaggccaaggtagtaccgcagttcctcctctgaagccgcgtat 143
Query: 477 gggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgac 536
||||| |||||||||||||| || ||||| || ||||| ||||| | ||| |||||||
Sbjct: 142 gggatgtcaatcttgttgcccagtatgaggaaaggaacgtttgcaagggagtcatctgct 83
Query: 537 aggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctacc 596
|| || || || ||||| || ||||| || ||||| || ||||| ||| ||||| |||
Sbjct: 82 agaagcgcatcaagctctttctttgactcggcaaaccgttccttgtcaacagcatccacc 23
Query: 597 aggtatactacagcatcaacct 618
| ||| || |||||||||||||
Sbjct: 22 aagtacacaacagcatcaacct 1
>gb|AW745579.1|AW745579 WS1_35_G04.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 262
Score = 119 bits (60), Expect = 3e-025
Identities = 174/212 (82%)
Strand = Plus / Minus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| || || |||||||| || ||||||||||| ||||||||||||||||| |||
Sbjct: 222 ttgatgtactgtgacacccacttaaacccatcgccgtaccccatcttgcgaacaacgctg 163
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| ||||| || || ||||| || || ||||| ||||| ||||||||||| ||
Sbjct: 162 cacatgaacacctccagggggcggacgttagactcgcccaggttaaccttgcccttgcca 103
Query: 420 gttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatacggg 479
|| ||||||||||| || || | |||||| || || ||||| || || | ||||| |||
Sbjct: 102 gtggtgaagttgctcagccccatgtgataacggagttcctcctctgaaacggcataaggg 43
Query: 480 atatcaatcttgttgccaaggatgagaaatgg 511
|| || |||||||| || ||||| || |||||
Sbjct: 42 atgtcgatcttgttccccaggatcaggaatgg 11
>gb|BG559904.1|BG559904 RHIZ2_75_B03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 522
Score = 115 bits (58), Expect = 5e-024
Identities = 195/238 (81%), Gaps = 2/238 (0%)
Strand = Plus / Minus
Query: 298 acttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacac 357
|||||||||| || || | ||| ||||| || || || |||||||||||||| || ||||
Sbjct: 270 acttgatgtactgagacatccatttgaagccttcaccatagcccatcttgcgcaccacac 211
Query: 358 tgcacatgaaaacctcaagtggccggacattggagtc-gccaaggttgaccttgcccttc 416
|||||||||| | ||| || || || || |||||||| |||||| || || |||||||||
Sbjct: 210 tgcacatgaagatctccagggggcgaacgttggagtcagccaag-ttcacgttgcccttc 152
Query: 417 ccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatac 476
|| |||||||||||||| ||||| |||| |||||||| ||||| || || || || ||
Sbjct: 151 cccgttgtgaagttgctcaggccaaggtagtaccgcagttcctcctctgaagccgcgtat 92
Query: 477 gggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctg 534
||||| |||||||||||||| || ||||| || ||||| ||||| | ||| |||||||
Sbjct: 91 gggatgtcaatcttgttgcccagtatgaggaaaggaacgtttgcaagggagtcatctg 34
>gb|CF488464.1|CF488464 POL1_50_D11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_50_D11_A002 3', mRNA sequence
Length = 618
Score = 115 bits (58), Expect = 5e-024
Identities = 195/238 (81%), Gaps = 2/238 (0%)
Strand = Plus / Minus
Query: 298 acttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacac 357
|||||||||| || || | ||| ||||| || || || |||||||||||||| || ||||
Sbjct: 315 acttgatgtactgagacatccatttgaagccttcaccatagcccatcttgcgcaccacac 256
Query: 358 tgcacatgaaaacctcaagtggccggacattggagtc-gccaaggttgaccttgcccttc 416
|||||||||| | ||| || || || |||||||| || |||||| || || |||||||||
Sbjct: 255 tgcacatgaagatctccagggggcgaacattggaatcagccaag-ttcacgttgcccttc 197
Query: 417 ccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatac 476
|| |||||||||||||| ||||| |||| |||||||| ||||| || || || || ||
Sbjct: 196 cccgttgtgaagttgctcaggccaaggtagtaccgcagttcctcctctgaagccgcgtat 137
Query: 477 gggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctg 534
||||| |||||||||||||| || ||||| || ||||| ||||| | ||| |||||||
Sbjct: 136 gggatgtcaatcttgttgcccagcatgaggaaaggaacgtttgcaagggagtcatctg 79
>gb|BI074813.1|BI074813 IP1_16_G05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 567
Score = 113 bits (57), Expect = 2e-023
Identities = 186/229 (81%)
Strand = Plus / Minus
Query: 409 tgcccttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagagg 468
||||||| || || ||||||||||| || || | |||||| || || ||||| || || |
Sbjct: 567 tgcccttgccagtggtgaagttgctcagccccatgtgataacggagttcctcctctgaag 508
Query: 469 cagcatacgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaat 528
| ||||| ||||| || |||||||| || ||||| || ||||| ||| | |||| ||| |
Sbjct: 507 cggcataagggatgtcgatcttgttccccaggatcaggaatgggacagtggccagggagt 448
Query: 529 catctgacaggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacg 588
||||||| ||||| || || |||||||| ||||| |||||||| |||||||| ||||| |
Sbjct: 447 catctgataggagcgcatctagctccttctttgactcagcaaaccgctccttgtcatagg 388
Query: 589 catctaccaggtatactacagcatcaacctttgcgtagtaatccttcca 637
|||| || ||||| || || ||||| ||||| || ||||||||||||||
Sbjct: 387 catccacaaggtagaccactgcatccaccttagcatagtaatccttcca 339
>gb|CD429707.1|CD429707 ETH1_15_H12.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_15_H12_A002 3', mRNA sequence
Length = 150
Score = 113 bits (57), Expect = 2e-023
Identities = 76/81 (93%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 112 aacaaaatgttttcacgctaaagattcaacatgttccccaatgttaagcactgttttttc 171
|||||| |||||| || |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 150 aacaaattgttttgacactaaagattcaacatgttcctcaatgttaagcactgttttttc 91
Query: 172 ctcttcatacccctccatgat 192
||||||||| |||||||||||
Sbjct: 90 ctcttcata-ccctccatgat 71
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 204 atgatgatcatcgttcacgtgacgaaataccaaccagaacaaataaca 251
|||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct: 75 atgatgatcatcgttcctgtgacgaacaaccaaccataacaaataaca 28
>gb|BG560491.1|BG560491 RHIZ2_75_B03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 481
Score = 109 bits (55), Expect = 3e-022
Identities = 178/219 (81%)
Strand = Plus / Minus
Query: 425 gaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatacgggatatc 484
||||||||| ||||| |||| |||||||| ||||| || || || || || ||||| ||
Sbjct: 481 gaagttgctcaggccaaggtagtaccgcagttcctcctctgaagccgcgtatgggatgtc 422
Query: 485 aatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgacaggagagc 544
|||||||||||| || ||||| || ||||| ||||| | ||| ||||||| || |||||
Sbjct: 421 aatcttgttgcccagtatgaggaaaggaacgtttgcaagggagtcatctgctagaagagc 362
Query: 545 gtccagctccttttttgattcagcaaatcgctccttatcatacgcatctaccaggtatac 604
|| ||||| || ||||| || ||||| || ||||| ||| ||||| |||| ||| ||
Sbjct: 361 atcaagctctttctttgactcggcaaaccgttccttgtcaacagcatccaccaagtacac 302
Query: 605 tacagcatcaacctttgcgtagtaatccttccagacgcg 643
|||||||||||||| |||||||| ||||||||||||||
Sbjct: 301 aacagcatcaaccttggcgtagtagtccttccagacgcg 263
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 150,002
Number of Sequences: 832831
Number of extensions: 150002
Number of successful extensions: 40653
Number of sequences better than 0.5: 73
Number of HSP's better than 0.5 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40526
Number of HSP's gapped (non-prelim): 103
length of query: 643
length of database: 491,359,669
effective HSP length: 19
effective length of query: 624
effective length of database: 475,535,880
effective search space: 296734389120
effective search space used: 296734389120
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)