BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441100.2.1
(646 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG159292.1|BG159292 OV2_5_H06.g1_A002 Ovary 2 (OV2) Sorg... 420 e-116
gb|BG159555.1|BG159555 OV2_5_H06.b1_A002 Ovary 2 (OV2) Sorg... 420 e-116
gb|CD228332.1|CD228332 CCC1_7_D11.b1_A007 Callus culture/ce... 420 e-116
gb|CN126287.1|CN126287 RHOH1_16_F09.b1_A002 Acid- and alkal... 420 e-116
gb|BG463311.1|BG463311 EM1_48_A03.g1_A002 Embryo 1 (EM1) So... 412 e-113
gb|CN135205.1|CN135205 OX1_31_F02.b1_A002 Oxidatively-stres... 412 e-113
gb|CW269978.1|CW269978 104_741_11402142_148_35329_025 Sorgh... 398 e-109
gb|CW338169.1|CW338169 104_838_11484601_148_36127_009 Sorgh... 389 e-106
gb|CN147765.1|CN147765 WOUND1_52_A01.b1_A002 Wounded leaves... 333 1e-089
gb|CW087850.1|CW087850 104_432_10947871_116_32556_022 Sorgh... 196 2e-048
gb|CW338168.1|CW338168 104_838_11484601_116_36126_009 Sorgh... 188 4e-046
gb|CL160781.1|CL160781 104_351_10805235_114_31824_291 Sorgh... 58 1e-006
gb|BQ656122.1|BQ656122 pRC1119 Sorghum halepense rhizome cD... 58 1e-006
gb|CN123895.1|CN123895 RHOH1_1_H10.b1_A002 Acid- and alkali... 58 1e-006
gb|CW269977.1|CW269977 104_741_11402142_116_35325_025 Sorgh... 50 3e-004
gb|CW300247.1|CW300247 104_783_11463552_116_36252_088 Sorgh... 44 0.016
>gb|BG159292.1|BG159292 OV2_5_H06.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 584
Score = 420 bits (212), Expect = e-116
Identities = 362/408 (88%), Gaps = 8/408 (1%)
Strand = Plus / Plus
Query: 13 aagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagacccg 72
||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct: 71 aagcttgcatgaaggcaacaggagcttccatcaaggttgaatatcttgcccgtagacccg 130
Query: 73 gagattatgccgaggtatacagcgatccgtcgaaaatccacatggaactcaactggacag 132
|||||||||| ||||||||||| ||||| ||||||||| ||| ||| |||||||||||||
Sbjct: 131 gagattatgctgaggtatacagtgatccatcgaaaatctacaaggacctcaactggacag 190
Query: 133 cccagtacaccgatcttggccaaagcctcgcccaggcgtggaaatggcagaaagcgcacc 192
|||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 191 cccaatacactgatcttggccaaagccttgcccaggcatggaaatggcagaaagcgcacc 250
Query: 193 cgaacggatatggaccagcctgattcagagttcaaagattgagagagactcgtcacgcag 252
| |||||||||||| |||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 251 caaacggatatggatcagcctgattcagagttcaaaggttgagaga--ctcatcacgcag 308
Query: 253 atccaaagggtccatgtgcagtcatgtagccttcagacagttggttcttcatcaccatag 312
|||||| ||||| ||||||||| || ||||||||||| | ||||||||||| || |||
Sbjct: 309 atccaaggggtctatgtgcagtgatatagccttcagataattggttcttcaaca---tag 365
Query: 313 aaagatagcaaagagcatcagaagagtcctgattcttttattgcagcgctcgaagaagga 372
||| |||||||| |||| || || |||| ||||||||||||||||| ||| ||||||| |
Sbjct: 366 aaacatagcaaacagcaacacaaaagtcgtgattcttttattgcagtgctggaagaag-a 424
Query: 373 aaaaagtatcacagaga--accccctacctgctccttgattagtttca 418
|||||||||||||||| | | ||||||| ||||||||||||||||
Sbjct: 425 caaaagtatcacagagagaatgcactacctgttccttgattagtttca 472
Score = 113 bits (57), Expect = 2e-023
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 440 gttgacattttaatataatttgatgtgtgctgaggcgctatataataacacaaacgaagt 499
||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||| |
Sbjct: 496 gttgacattttaatatattttgatgtgtgctgaggcactatataataacacaaatgaaat 555
Query: 500 tttgttgtagacagggt 516
| |||||||||||||||
Sbjct: 556 tgtgttgtagacagggt 572
>gb|BG159555.1|BG159555 OV2_5_H06.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 484
Score = 420 bits (212), Expect = e-116
Identities = 362/408 (88%), Gaps = 8/408 (1%)
Strand = Plus / Plus
Query: 13 aagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagacccg 72
||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct: 71 aagcttgcatgaaggcaacaggagcttccatcaaggttgaatatcttgcccgtagacccg 130
Query: 73 gagattatgccgaggtatacagcgatccgtcgaaaatccacatggaactcaactggacag 132
|||||||||| ||||||||||| ||||| ||||||||| ||| ||| |||||||||||||
Sbjct: 131 gagattatgctgaggtatacagtgatccatcgaaaatctacaaggacctcaactggacag 190
Query: 133 cccagtacaccgatcttggccaaagcctcgcccaggcgtggaaatggcagaaagcgcacc 192
|||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 191 cccaatacactgatcttggccaaagccttgcccaggcatggaaatggcagaaagcgcacc 250
Query: 193 cgaacggatatggaccagcctgattcagagttcaaagattgagagagactcgtcacgcag 252
| |||||||||||| |||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 251 caaacggatatggatcagcctgattcagagttcaaaggttgagaga--ctcatcacgcag 308
Query: 253 atccaaagggtccatgtgcagtcatgtagccttcagacagttggttcttcatcaccatag 312
|||||| ||||| ||||||||| || ||||||||||| | ||||||||||| || |||
Sbjct: 309 atccaaggggtctatgtgcagtgatatagccttcagataattggttcttcaaca---tag 365
Query: 313 aaagatagcaaagagcatcagaagagtcctgattcttttattgcagcgctcgaagaagga 372
||| |||||||| |||| || || |||| ||||||||||||||||| ||| ||||||| |
Sbjct: 366 aaacatagcaaacagcaacacaaaagtcgtgattcttttattgcagtgctggaagaag-a 424
Query: 373 aaaaagtatcacagaga--accccctacctgctccttgattagtttca 418
|||||||||||||||| | | ||||||| ||||||||||||||||
Sbjct: 425 caaaagtatcacagagagaatgcactacctgttccttgattagtttca 472
>gb|CD228332.1|CD228332 CCC1_7_D11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_7_D11_A007 3', mRNA sequence
Length = 641
Score = 420 bits (212), Expect = e-116
Identities = 362/408 (88%), Gaps = 8/408 (1%)
Strand = Plus / Plus
Query: 13 aagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagacccg 72
||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct: 78 aagcttgcatgaaggcaacaggagcttccatcaaggttgaatatcttgcccgtagacccg 137
Query: 73 gagattatgccgaggtatacagcgatccgtcgaaaatccacatggaactcaactggacag 132
|||||||||| ||||||||||| ||||| ||||||||| ||| ||| |||||||||||||
Sbjct: 138 gagattatgctgaggtatacagtgatccatcgaaaatctacaaggacctcaactggacag 197
Query: 133 cccagtacaccgatcttggccaaagcctcgcccaggcgtggaaatggcagaaagcgcacc 192
|||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 198 cccaatacactgatcttggccaaagccttgcccaggcatggaaatggcagaaagcgcacc 257
Query: 193 cgaacggatatggaccagcctgattcagagttcaaagattgagagagactcgtcacgcag 252
| |||||||||||| |||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 258 caaacggatatggatcagcctgattcagagttcaaaggttgagaga--ctcatcacgcag 315
Query: 253 atccaaagggtccatgtgcagtcatgtagccttcagacagttggttcttcatcaccatag 312
|||||| ||||| ||||||||| || ||||||||||| | ||||||||||| || |||
Sbjct: 316 atccaaggggtctatgtgcagtgatatagccttcagataattggttcttcaaca---tag 372
Query: 313 aaagatagcaaagagcatcagaagagtcctgattcttttattgcagcgctcgaagaagga 372
||| |||||||| |||| || || |||| ||||||||||||||||| ||| ||||||| |
Sbjct: 373 aaacatagcaaacagcaacacaaaagtcgtgattcttttattgcagtgctggaagaag-a 431
Query: 373 aaaaagtatcacagaga--accccctacctgctccttgattagtttca 418
|||||||||||||||| | | ||||||| ||||||||||||||||
Sbjct: 432 caaaagtatcacagagagaatgcactacctgttccttgattagtttca 479
Score = 149 bits (75), Expect = 4e-034
Identities = 112/123 (91%), Gaps = 1/123 (0%)
Strand = Plus / Plus
Query: 440 gttgacattttaatataatttgatgtgtgctgaggcgctatataataacacaaacgaagt 499
||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||| |
Sbjct: 503 gttgacattttaatatattttgatgtgtgctgaggcactatataataacacaaatgaaat 562
Query: 500 tttgttgtagacaggg-tagatcgatctcgtgtatcaacttttgtggtggtagaacgaaa 558
| |||||||||||||| |||||| ||||||||||||||| || || ||||||||| ||||
Sbjct: 563 tgtgttgtagacagggttagatcaatctcgtgtatcaaccttcgttgtggtagaatgaaa 622
Query: 559 gga 561
|||
Sbjct: 623 gga 625
>gb|CN126287.1|CN126287 RHOH1_16_F09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_16_F09_A002 3', mRNA sequence
Length = 812
Score = 420 bits (212), Expect = e-116
Identities = 362/408 (88%), Gaps = 8/408 (1%)
Strand = Plus / Plus
Query: 13 aagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagacccg 72
||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct: 132 aagcttgcatgaaggcaacaggagcttccatcaaggttgaatatcttgcccgtagacccg 191
Query: 73 gagattatgccgaggtatacagcgatccgtcgaaaatccacatggaactcaactggacag 132
|||||||||| ||||||||||| ||||| ||||||||| ||| ||| |||||||||||||
Sbjct: 192 gagattatgctgaggtatacagtgatccatcgaaaatctacaaggacctcaactggacag 251
Query: 133 cccagtacaccgatcttggccaaagcctcgcccaggcgtggaaatggcagaaagcgcacc 192
|||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 252 cccaatacactgatcttggccaaagccttgcccaggcatggaaatggcagaaagcgcacc 311
Query: 193 cgaacggatatggaccagcctgattcagagttcaaagattgagagagactcgtcacgcag 252
| |||||||||||| |||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 312 caaacggatatggatcagcctgattcagagttcaaaggttgagaga--ctcatcacgcag 369
Query: 253 atccaaagggtccatgtgcagtcatgtagccttcagacagttggttcttcatcaccatag 312
|||||| ||||| ||||||||| || ||||||||||| | ||||||||||| || |||
Sbjct: 370 atccaaggggtctatgtgcagtgatatagccttcagataattggttcttcaaca---tag 426
Query: 313 aaagatagcaaagagcatcagaagagtcctgattcttttattgcagcgctcgaagaagga 372
||| |||||||| |||| || || |||| ||||||||||||||||| ||| ||||||| |
Sbjct: 427 aaacatagcaaacagcaacacaaaagtcgtgattcttttattgcagtgctggaagaag-a 485
Query: 373 aaaaagtatcacagaga--accccctacctgctccttgattagtttca 418
|||||||||||||||| | | ||||||| ||||||||||||||||
Sbjct: 486 caaaagtatcacagagagaatgcactacctgttccttgattagtttca 533
Score = 196 bits (99), Expect = 2e-048
Identities = 139/151 (92%), Gaps = 1/151 (0%)
Strand = Plus / Plus
Query: 440 gttgacattttaatataatttgatgtgtgctgaggcgctatataataacacaaacgaagt 499
||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||| |
Sbjct: 557 gttgacattttaatatattttgatgtgtgctgaggcactatataataacacaaatgaaat 616
Query: 500 tttgttgtagacaggg-tagatcgatctcgtgtatcaacttttgtggtggtagaacgaaa 558
| |||||||||||||| |||||| ||||||||||||||| || || ||||||||| ||||
Sbjct: 617 tgtgttgtagacagggttagatcaatctcgtgtatcaaccttcgttgtggtagaatgaaa 676
Query: 559 ggatataaataagttgatgtaagtttttgtt 589
||||||||||||||||||||| |||||||||
Sbjct: 677 ggatataaataagttgatgtatgtttttgtt 707
>gb|BG463311.1|BG463311 EM1_48_A03.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 622
Score = 412 bits (208), Expect = e-113
Identities = 361/408 (88%), Gaps = 8/408 (1%)
Strand = Plus / Plus
Query: 13 aagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagacccg 72
||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct: 44 aagcttgcatgaaggcaacaggagcttccatcaaggttgaatatcttgcccgtagacccg 103
Query: 73 gagattatgccgaggtatacagcgatccgtcgaaaatccacatggaactcaactggacag 132
|||||||||| ||||||||||| ||||| ||||||||| ||| ||| |||||||||||||
Sbjct: 104 gagattatgctgaggtatacagtgatccatcgaaaatctacaaggacctcaactggacag 163
Query: 133 cccagtacaccgatcttggccaaagcctcgcccaggcgtggaaatggcagaaagcgcacc 192
|||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 164 cccaatacactgatcttggccaaagccttgcccaggcatggaaatggcagaaagcgcacc 223
Query: 193 cgaacggatatggaccagcctgattcagagttcaaagattgagagagactcgtcacgcag 252
| |||||||||||| |||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 224 caaacggatatggatcagcctgattcagagttcaaaggttgagaga--ctcatcacgcag 281
Query: 253 atccaaagggtccatgtgcagtcatgtagccttcagacagttggttcttcatcaccatag 312
|||||| ||||| ||||||||| || |||| |||||| | ||||||||||| || |||
Sbjct: 282 atccaaggggtctatgtgcagtgatatagctttcagataattggttcttcaaca---tag 338
Query: 313 aaagatagcaaagagcatcagaagagtcctgattcttttattgcagcgctcgaagaagga 372
||| |||||||| |||| || || |||| ||||||||||||||||| ||| ||||||| |
Sbjct: 339 aaacatagcaaacagcaacacaaaagtcgtgattcttttattgcagtgctggaagaag-a 397
Query: 373 aaaaagtatcacagaga--accccctacctgctccttgattagtttca 418
|||||||||||||||| | | ||||||| ||||||||||||||||
Sbjct: 398 caaaagtatcacagagagaatgcactacctgttccttgattagtttca 445
Score = 188 bits (95), Expect = 4e-046
Identities = 139/151 (92%), Gaps = 2/151 (1%)
Strand = Plus / Plus
Query: 440 gttgacattttaatataatttgatgtgtgctgaggcgctatataataacacaaacgaagt 499
||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||| |
Sbjct: 469 gttgacattttaatatattttgatgtgtgctgaggcactatataataacacaaatgaaat 528
Query: 500 tttgttgtagacaggg-tagatcgatctcgtgtatcaacttttgtggtggtagaacgaaa 558
| |||||||||||||| |||||| ||||||||||||||| || || ||||||||| ||||
Sbjct: 529 tgtgttgtagacagggttagatcaatctcgtgtatcaaccttcgttgtggtagaatgaaa 588
Query: 559 ggatataaataagttgatgtaagtttttgtt 589
|||||||||||||||||||| ||||||||||
Sbjct: 589 ggatataaataagttgatgt-agtttttgtt 618
>gb|CN135205.1|CN135205 OX1_31_F02.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_31_F02_A002 3', mRNA sequence
Length = 683
Score = 412 bits (208), Expect = e-113
Identities = 361/408 (88%), Gaps = 8/408 (1%)
Strand = Plus / Plus
Query: 13 aagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagacccg 72
||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct: 37 aagcttgcatgaaggcaacaggagcttccatcaaggttgaatatcttgcccgtagacccg 96
Query: 73 gagattatgccgaggtatacagcgatccgtcgaaaatccacatggaactcaactggacag 132
|||||||||| ||||||||||| ||||| ||||||||| ||| ||| |||||||||||||
Sbjct: 97 gagattatgctgaggtatacagtgatccatcgaaaatctacaaggacctcaactggacag 156
Query: 133 cccagtacaccgatcttggccaaagcctcgcccaggcgtggaaatggcagaaagcgcacc 192
|||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 157 cccaatacactgatcttggccaaagccttgcccaggcatggaaatggcagaaagcgcacc 216
Query: 193 cgaacggatatggaccagcctgattcagagttcaaagattgagagagactcgtcacgcag 252
| |||||||| ||| |||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 217 caaacggatacggatcagcctgattcagagttcaaaggttgagaga--ctcatcacgcag 274
Query: 253 atccaaagggtccatgtgcagtcatgtagccttcagacagttggttcttcatcaccatag 312
|||||| ||||| ||||||||| || ||||||||||| | ||||||||||| || |||
Sbjct: 275 atccaaggggtctatgtgcagtgatatagccttcagataattggttcttcaaca---tag 331
Query: 313 aaagatagcaaagagcatcagaagagtcctgattcttttattgcagcgctcgaagaagga 372
||| |||||||| |||| || || |||| ||||||||||||||||| ||| ||||||| |
Sbjct: 332 aaacatagcaaacagcaacacaaaagtcgtgattcttttattgcagtgctggaagaag-a 390
Query: 373 aaaaagtatcacagaga--accccctacctgctccttgattagtttca 418
|||||||||||||||| | | ||||||| ||||||||||||||||
Sbjct: 391 caaaagtatcacagagagaatgcactacctgttccttgattagtttca 438
Score = 196 bits (99), Expect = 2e-048
Identities = 139/151 (92%), Gaps = 1/151 (0%)
Strand = Plus / Plus
Query: 440 gttgacattttaatataatttgatgtgtgctgaggcgctatataataacacaaacgaagt 499
||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||| |
Sbjct: 462 gttgacattttaatatattttgatgtgtgctgaggcactatataataacacaaatgaaat 521
Query: 500 tttgttgtagacaggg-tagatcgatctcgtgtatcaacttttgtggtggtagaacgaaa 558
| |||||||||||||| |||||| ||||||||||||||| || || ||||||||| ||||
Sbjct: 522 tgtgttgtagacagggttagatcaatctcgtgtatcaaccttcgttgtggtagaatgaaa 581
Query: 559 ggatataaataagttgatgtaagtttttgtt 589
||||||||||||||||||||| |||||||||
Sbjct: 582 ggatataaataagttgatgtatgtttttgtt 612
>gb|CW269978.1|CW269978 104_741_11402142_148_35329_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402142, DNA
sequence
Length = 599
Score = 398 bits (201), Expect = e-109
Identities = 320/358 (89%), Gaps = 5/358 (1%)
Strand = Plus / Plus
Query: 13 aagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagacccg 72
||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct: 246 aagcttgcatgaaggcaacaggagcttccatcaaggttgaatatcttgcccgtagacccg 305
Query: 73 gagattatgccgaggtatacagcgatccgtcgaaaatccacatggaactcaactggacag 132
|||||||||| ||||||||||| ||||| ||||||||| ||| ||| |||||||||||||
Sbjct: 306 gagattatgctgaggtatacagtgatccatcgaaaatctacaaggacctcaactggacag 365
Query: 133 cccagtacaccgatcttggccaaagcctcgcccaggcgtggaaatggcagaaagcgcacc 192
|||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 366 cccaatacactgatcttggccaaagccttgcccaggcatggaaatggcagaaagcgcacc 425
Query: 193 cgaacggatatggaccagcctgattcagagttcaaagattgagagagactcgtcacgcag 252
| |||||||||||| |||||||||||||||||||||| || ||||||||| ||||||||
Sbjct: 426 caaacggatatggatcagcctgattcagagttcaaaggtt--gagagactcatcacgcag 483
Query: 253 atccaaagggtccatgtgcagtcatgtagccttcagacagttggttcttcatcaccatag 312
|||||| ||||| ||||||||| || ||||||||||| | |||||||| ||| |||||
Sbjct: 484 atccaaggggtctatgtgcagtgatatagccttcagataattggttct---tcaacatag 540
Query: 313 aaagatagcaaagagcatcagaagagtcctgattcttttattgcagcgctcgaagaag 370
||| |||||||| |||| || || |||| ||||||||||||||||| ||| |||||||
Sbjct: 541 aaacatagcaaacagcaacacaaaagtcgtgattcttttattgcagtgctggaagaag 598
>gb|CW338169.1|CW338169 104_838_11484601_148_36127_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11484601, DNA
sequence
Length = 604
Score = 389 bits (196), Expect = e-106
Identities = 358/408 (87%), Gaps = 8/408 (1%)
Strand = Plus / Minus
Query: 13 aagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagacccg 72
||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct: 514 aagcttgcatgaaggcaacaggagcttccatcaaggttgaatatcttgcccgtagacccg 455
Query: 73 gagattatgccgaggtatacagcgatccgtcgaaaatccacatggaactcaactggacag 132
|||||||||| ||||||||||| ||||| ||||||||| ||| || |||| ||||||||
Sbjct: 454 gagattatgctgaggtatacagtgatccatcgaaaatctacaaggtcctcatctggacag 395
Query: 133 cccagtacaccgatcttggccaaagcctcgcccaggcgtggaaatggcagaaagcgcacc 192
| || ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 394 cgcaatacactgatcttggccaaagccttgcccaggcatggaaatggcagaaagcgcacc 335
Query: 193 cgaacggatatggaccagcctgattcagagttcaaagattgagagagactcgtcacgcag 252
| |||||||||||| |||| ||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 334 caaacggatatggatcagcatgattcagagttcaaaggttgagaga--ctcatcacgcag 277
Query: 253 atccaaagggtccatgtgcagtcatgtagccttcagacagttggttcttcatcaccatag 312
|||||| ||||| ||||||||| || ||||||||||| | ||||||||||| || |||
Sbjct: 276 atccaaggggtctatgtgcagtgatatagccttcagataattggttcttcaaca---tag 220
Query: 313 aaagatagcaaagagcatcagaagagtcctgattcttttattgcagcgctcgaagaagga 372
||| |||||||| |||| || || |||| ||||||||||||||||| ||| ||||||| |
Sbjct: 219 aaacatagcaaacagcaacacaaaagtcgtgattcttttattgcagtgctggaagaag-a 161
Query: 373 aaaaagtatcacagaga--accccctacctgctccttgattagtttca 418
|||||||||||||||| | | ||||||| ||||||||||||||||
Sbjct: 160 caaaagtatcacagagagaatgcactacctgttccttgattagtttca 113
Score = 113 bits (57), Expect = 2e-023
Identities = 72/77 (93%)
Strand = Plus / Minus
Query: 440 gttgacattttaatataatttgatgtgtgctgaggcgctatataataacacaaacgaagt 499
||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||| |
Sbjct: 89 gttgacattttaatatattttgatgtgtgctgaggcactatataataacacaaatgaaat 30
Query: 500 tttgttgtagacagggt 516
| |||||||||||||||
Sbjct: 29 tgtgttgtagacagggt 13
>gb|CN147765.1|CN147765 WOUND1_52_A01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_52_A01_A002 3', mRNA sequence
Length = 625
Score = 333 bits (168), Expect = 1e-089
Identities = 351/408 (86%), Gaps = 8/408 (1%)
Strand = Plus / Plus
Query: 13 aagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagacccg 72
||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct: 65 aagcttgcatgaaggcaacaggagcttccatcaaggttgaatatcttgcccgtagacccg 124
Query: 73 gagattatgccgaggtatacagcgatccgtcgaaaatccacatggaactcaactggacag 132
||||||||| ||||||||||| ||||| | ||||||| ||| ||| | ||||||||||
Sbjct: 125 gagattatgttgaggtatacagtgatccatggaaaatctacaaggacttgaactggacag 184
Query: 133 cccagtacaccgatcttggccaaagcctcgcccaggcgtggaaatggcagaaagcgcacc 192
|||| ||||| ||| ||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 185 cccaatacactgattttggccaaagcctttcccaggcatggaaatggcagaaagcgcacc 244
Query: 193 cgaacggatatggaccagcctgattcagagttcaaagattgagagagactcgtcacgcag 252
| |||||||||||| |||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 245 caaacggatatggatcagcctgattcagagttcaaaggttgagaga--ctcatcacgcag 302
Query: 253 atccaaagggtccatgtgcagtcatgtagccttcagacagttggttcttcatcaccatag 312
|||||| ||||| ||||||||| || ||||||||||| | ||||||||||| | |||
Sbjct: 303 atccaaggggtctatgtgcagtgatatagccttcagataattggttcttcaact---tag 359
Query: 313 aaagatagcaaagagcatcagaagagtcctgattcttttattgcagcgctcgaagaagga 372
|| |||||||| |||| || || ||| ||||||||||||||||| | | ||||||| |
Sbjct: 360 aaccatagcaaacagcaacacaaaagttgtgattcttttattgcagtgttggaagaag-a 418
Query: 373 aaaaagtatcacagaga--accccctacctgctccttgattagtttca 418
|||||||||||||||| | | ||||||| |||| |||||||||||
Sbjct: 419 caaaagtatcacagagagaatgcactacctgttcctggattagtttca 466
Score = 151 bits (76), Expect = 9e-035
Identities = 122/136 (89%), Gaps = 1/136 (0%)
Strand = Plus / Plus
Query: 440 gttgacattttaatataatttgatgtgtgctgaggcgctatataataacacaaacgaagt 499
||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||| |
Sbjct: 490 gttgacattttaatatattttgatgtgtgtggaggcactatataataacacaaatgaaat 549
Query: 500 tttgttgtagacaggg-tagatcgatctcgtgtatcaacttttgtggtggtagaacgaaa 558
| |||||||||||||| |||||| || |||||||||||| || || ||||||||| ||||
Sbjct: 550 tgtgttgtagacagggttagatcaatttcgtgtatcaaccttggttgtggtagaatgaaa 609
Query: 559 ggatataaataagttg 574
||||||||||||||||
Sbjct: 610 ggatataaataagttg 625
>gb|CW087850.1|CW087850 104_432_10947871_116_32556_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947871, DNA
sequence
Length = 732
Score = 196 bits (99), Expect = 2e-048
Identities = 139/151 (92%), Gaps = 1/151 (0%)
Strand = Plus / Plus
Query: 440 gttgacattttaatataatttgatgtgtgctgaggcgctatataataacacaaacgaagt 499
||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||| |
Sbjct: 87 gttgacattttaatatattttgatgtgtgctgaggcactatataataacacaaatgaaat 146
Query: 500 tttgttgtagacaggg-tagatcgatctcgtgtatcaacttttgtggtggtagaacgaaa 558
| |||||||||||||| |||||| ||||||||||||||| || || ||||||||| ||||
Sbjct: 147 tgtgttgtagacagggttagatcaatctcgtgtatcaaccttcgttgtggtagaatgaaa 206
Query: 559 ggatataaataagttgatgtaagtttttgtt 589
||||||||||||||||||||| |||||||||
Sbjct: 207 ggatataaataagttgatgtatgtttttgtt 237
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 395 ctacctgctccttgattagtttca 418
||||||| ||||||||||||||||
Sbjct: 40 ctacctgttccttgattagtttca 63
>gb|CW338168.1|CW338168 104_838_11484601_116_36126_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11484601, DNA
sequence
Length = 621
Score = 188 bits (95), Expect = 4e-046
Identities = 146/163 (89%)
Strand = Plus / Plus
Query: 13 aagcttgcaagaaggcaacaggagcttctatcaaggtcgaatatcttgcacgtagacccg 72
||||||||| ||| |||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct: 459 aagcttgcatgaacgcaacaggagcttccatcaaggttgaatatcttgcccgtagacccg 518
Query: 73 gagattatgccgaggtatacagcgatccgtcgaaaatccacatggaactcaactggacag 132
|||||||||| ||||||||||| ||||| ||||||||| ||| ||| |||||||||||||
Sbjct: 519 gagattatgctgaggtatacagtgatccatcgaaaatctacaaggacctcaactggacag 578
Query: 133 cccagtacaccgatcttggccaaagcctcgcccaggcgtggaa 175
||| ||||| ||||||||||||||||| ||||| || |||||
Sbjct: 579 tccaatacactgatcttggccaaagccttgcccatgcatggaa 621
>gb|CL160781.1|CL160781 104_351_10805235_114_31824_291 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805235, DNA
sequence
Length = 632
Score = 58.0 bits (29), Expect = 1e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 72 ggagattatgccgaggtatacagcgatccgtcgaaaatccacatggaactcaactggaca 131
||||||||||| || |||||||||||||| | || ||| ||| ||| ||||||||||||
Sbjct: 545 ggagattatgcagatgtatacagcgatccaacaaagatcaacaaggagctcaactggaca 486
Query: 132 gcccagtacaccgatct 148
|| || || ||||||||
Sbjct: 485 gctcaatataccgatct 469
>gb|BQ656122.1|BQ656122 pRC1119 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC1119, mRNA sequence
Length = 862
Score = 58.0 bits (29), Expect = 1e-006
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 72 ggagattatgccgaggtatacagcgatccgtcgaaaatccacatggaactcaactggaca 131
||||||||||| || |||||||||||||| | || ||| ||| ||| ||||||||||||
Sbjct: 439 ggagattatgcagaagtatacagcgatccaacaaagatcaacaaggagctcaactggaca 498
Query: 132 gcccagtacaccgatct 148
|| || || ||||||||
Sbjct: 499 gctcaatataccgatct 515
>gb|CN123895.1|CN123895 RHOH1_1_H10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_1_H10_A002 3', mRNA sequence
Length = 747
Score = 58.0 bits (29), Expect = 1e-006
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 72 ggagattatgccgaggtatacagcgatccgtcgaaaatccacatggaactcaactggaca 131
||||||||||| || |||||||||||||| | || ||| ||| ||| ||||||||||||
Sbjct: 399 ggagattatgcagaagtatacagcgatccaacaaagatcaacaaggagctcaactggaca 458
Query: 132 gcccagtacaccgatct 148
|| || || ||||||||
Sbjct: 459 gctcaatataccgatct 475
>gb|CW269977.1|CW269977 104_741_11402142_116_35325_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402142, DNA
sequence
Length = 550
Score = 50.1 bits (25), Expect = 3e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 561 atataaataagttgatgtaagtttttgtt 589
||||||||||||||||||| |||||||||
Sbjct: 550 atataaataagttgatgtatgtttttgtt 522
>gb|CW300247.1|CW300247 104_783_11463552_116_36252_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463552, DNA
sequence
Length = 501
Score = 44.1 bits (22), Expect = 0.016
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 72 ggagattatgccgaggtatacagcgatccgtcgaaaatccacatggaactcaactggaca 131
||||||||||| || |||||||||||||| | | ||| ||| ||| ||||||||||||
Sbjct: 488 ggagattatgcagaagtatacagcgatccaacaacgatcaacaaggagctcaactggaca 429
Query: 132 gc 133
||
Sbjct: 428 gc 427
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 140,692
Number of Sequences: 832831
Number of extensions: 140692
Number of successful extensions: 37896
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37827
Number of HSP's gapped (non-prelim): 37
length of query: 646
length of database: 491,359,669
effective HSP length: 19
effective length of query: 627
effective length of database: 475,535,880
effective search space: 298160996760
effective search space used: 298160996760
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)