BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441058.2.1
(1000 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN136007.1|CN136007 OX1_40_F04.b1_A002 Oxidatively-stres... 1053 0.0
gb|CD232537.1|CD232537 SS1_46_A04.b1_A012 Salt-stressed see... 963 0.0
gb|CF770669.1|CF770669 DSBF1_9_C10.b1_A010 Drought-stressed... 954 0.0
gb|CF482678.1|CF482678 POL1_8_A10.g1_A002 Pollen Sorghum bi... 926 0.0
gb|CF489062.1|CF489062 POL1_54_D10.b1_A002 Pollen Sorghum b... 918 0.0
gb|CN142281.1|CN142281 WOUND1_9_B02.b1_A002 Wounded leaves ... 890 0.0
gb|CF770756.1|CF770756 DSBF1_9_C10.g1_A010 Drought-stressed... 835 0.0
gb|CD231553.1|CD231553 SS1_22_A04.b1_A012 Salt-stressed see... 813 0.0
gb|BM330645.1|BM330645 PIC1_54_F06.g1_A002 Pathogen-infecte... 793 0.0
gb|CB926914.1|CB926914 ABA1_11_H09.b1_A012 Abscisic acid-tr... 724 0.0
gb|CX611385.1|CX611385 ANR1_24_H01.b1_A002 Anaerobic roots ... 712 0.0
gb|AW286516.2|AW286516 LG1_333_H05.g1_A002 Light Grown 1 (L... 690 0.0
gb|CF772714.1|CF772714 DSBF1_38_D12.g1_A010 Drought-stresse... 472 e-131
gb|CN136092.1|CN136092 OX1_40_F04.g1_A002 Oxidatively-stres... 309 3e-082
gb|CW089860.1|CW089860 104_435_10948953_114_32588_039 Sorgh... 256 3e-066
gb|CW089861.1|CW089861 104_435_10948953_116_32598_039 Sorgh... 256 3e-066
gb|BM325934.1|BM325934 PIC1_54_F06.b1_A002 Pathogen-infecte... 206 3e-051
gb|CN142353.1|CN142353 WOUND1_9_B02.g1_A002 Wounded leaves ... 172 4e-041
gb|CW132202.1|CW132202 104_515_11116084_148_34793_008 Sorgh... 153 4e-035
gb|CW309793.1|CW309793 104_798_11469378_148_36242_067 Sorgh... 127 2e-027
gb|CD232638.1|CD232638 SS1_46_A04.g1_A012 Salt-stressed see... 90 5e-016
gb|CW319061.1|CW319061 104_811_11474285_116_35880_023 Sorgh... 42 0.097
gb|CW464613.1|CW464613 fsbb001f213p09k0 Sorghum methylation... 42 0.097
gb|AW671301.1|AW671301 LG1_333_H05.b1_A002 Light Grown 1 (L... 42 0.097
>gb|CN136007.1|CN136007 OX1_40_F04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_40_F04_A002 3', mRNA sequence
Length = 751
Score = 1053 bits (531), Expect = 0.0
Identities = 693/745 (93%), Gaps = 9/745 (1%)
Strand = Plus / Plus
Query: 247 tacacataccagacacttgatttctgggaacagatcaaaaccccagggatgtctttgaga 306
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacacataccagacgcttgatttttgggaacagatcaaaaccccagggatgtctttgaga 60
Query: 307 tgctctgggttatatctctctcagtttcgccatacctctcctcatcttttagcctcagga 366
||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 61 tgctctgggttatatctttctcagttccgccgtacctctcctcatcttttagcctcagga 120
Query: 367 gatggcaaaagaactgccactattgttggcgatgtctatatccatccatctgccaaggtg 426
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 121 gacggcaaaagaactgccactattgttggcgatgtgtatatccatccatctgccaaggtg 180
Query: 427 catcctacttcaaagattggcccaaatgtctctatatcagcaaatgcacgcgttggagct 486
||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct: 181 catcctacttcaaagattggccccaatgtctctatatcagcaaatgcgcgagttggagct 240
Query: 487 ggtgccaggcttatcaattgcataattctggatgatgttgaaattatggaaaatgctgtt 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggtgccaggcttatcaattgcataattctggatgatgttgaaattatggaaaatgctgtt 300
Query: 547 gttatacattcaattgtagggtggaaatcatccattggaaaatggtcacgtgtacagggc 606
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 301 gttatacattcaattgtggggtggaagtcatccattggaaaatggtcacgtgtacagggc 360
Query: 607 gaaggtgatcacaatgccaaacttggcattactattcttggtgaagccgttgatgttgaa 666
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 361 gaaggcgatcacaatgccaaacttggcattactattcttggtgaagcagttgatgttgaa 420
Query: 667 gatgaagtagttgtagttaacagcatcgtgctcccaaataaaactctcaatgtcagtgtc 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gatgaagtagttgtagttaacagcatcgtgctcccaaataaaactctcaatgtcagtgtc 480
Query: 727 caagaggagatcatcctataataac---catcattttttgtctaattccatataaggtct 783
||||||||||||||||||||||| | ||| |||||||| | || ||| |||||||||
Sbjct: 481 caagaggagatcatcctataatagctgtcatttttttttgttttatcccaaataaggtct 540
Query: 784 gagtaccaatcacatagtttaagtttattcgttctcaccatgtaatgtaaccttccatta 843
|||||||||||||||||||| | ||||| ||||||||| ||||| |||||||||
Sbjct: 541 cagtaccaatcacatagtttatgcttattggttctcacctggtaat-----cttccatta 595
Query: 844 gatcgagattattagtttgcatttatacctgtcttgcagcatgacactgcgcaatcttga 903
||| || |||||||||||| || |||||| ||| ||||||||| ||||| |||| ||||
Sbjct: 596 gattgatattattagtttgtatctatacccatctggcagcatgatactgcacaatattga 655
Query: 904 cttgctatgctactttggttagcgattgtggtgatgtaaaaaatgtacaaaca-ggtgac 962
||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||
Sbjct: 656 cttgctatgctactttggttagcgagcgcggtgatgtaaaaaatgtacaaacagggtgac 715
Query: 963 accattttttgtgagaatgactgaa 987
|||| |||| ||||||||||||||
Sbjct: 716 accaattttgttgagaatgactgaa 740
>gb|CD232537.1|CD232537 SS1_46_A04.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_46_A04_A012 3', mRNA sequence
Length = 637
Score = 963 bits (486), Expect = 0.0
Identities = 599/636 (94%), Gaps = 8/636 (1%)
Strand = Plus / Plus
Query: 228 agcgggaaagaaggagctgtacacataccagacacttgatttctgggaacagatcaaaac 287
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 1 agcgggaaagaaggagctgtacacataccagacgcttgatttttgggaacagatcaaaac 60
Query: 288 cccagggatgtctttgagatgctctgggttatatctctctcagtttcgccatacctctcc 347
|||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||
Sbjct: 61 cccagggatgtctttgagatgctctgggttatatctttctcagttccgccgtacctctcc 120
Query: 348 tcatcttttagcctcaggagatggcaaaagaactgccactattgttggcgatgtctatat 407
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 121 tcatcttttagcctcaggagacggcaaaagaactgccactattgttggcgatgtgtatat 180
Query: 408 ccatccatctgccaaggtgcatcctacttcaaagattggcccaaatgtctctatatcagc 467
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 181 ccatccatctgccaaggtgcatcctacttcaaagattggccccaatgtctctatatcagc 240
Query: 468 aaatgcacgcgttggagctggtgccaggcttatcaattgcataattctggatgatgttga 527
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaatgcgcgagttggagctggtgccaggcttatcaattgcataattctggatgatgttga 300
Query: 528 aattatggaaaatgctgttgttatacattcaattgtagggtggaaatcatccattggaaa 587
|||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct: 301 aattatggaaaatgctgttgttatgcattcaattgtggggtggaagtcatccattggaaa 360
Query: 588 atggtcacgtgtacagggcgaaggtgatcacaatgccaaacttggcattactattcttgg 647
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 361 atggtcacgtgtacagggcgaaggcgatcacgatgccaaacttggcattactattcttgg 420
Query: 648 tgaagccgttgatgttgaagatgaagtagttgtagttaacagcatcgtgctcccaaataa 707
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgaagcagttgatgttgaagatgaagtagttgtagttaacagcatcgtgctcccaaataa 480
Query: 708 aactctcaatgtcagtgtccaagaggagatcatcctataataac---catcattttttgt 764
|||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct: 481 aactctcaatgtcagtgtccaagaggagatcatcctataatagctgtcatttttttttgt 540
Query: 765 ctaattccatataaggtctgagtaccaatcacatagtttaagtttattcgttctcaccat 824
| || ||| ||||||||| |||||||||||||||||||| | ||||||||||||||| |
Sbjct: 541 tttatcccaaataaggtctcagtaccaatcacatagtttatgcttattcgttctcacctt 600
Query: 825 gtaatgtaaccttccattagatcgagattattagtt 860
||||| |||||||||||| || ||||||||||
Sbjct: 601 gtaat-----cttccattagattgatattattagtt 631
>gb|CF770669.1|CF770669 DSBF1_9_C10.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_9_C10_A010 5', mRNA sequence
Length = 654
Score = 954 bits (481), Expect = 0.0
Identities = 617/660 (93%), Gaps = 7/660 (1%)
Strand = Plus / Plus
Query: 262 cttgatttctgggaacagatcaaaaccccagggatgtctttgagatgctctgggttatat 321
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttgatttttgggaacagatcaaaaccccagggatgtctttgagatgctctgggttatat 60
Query: 322 ctctctcagtttcgccatacctctcctcatcttttagcctcaggagatggcaaaagaact 381
|| |||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 61 ctttctcagttccgccgtacctctcctcatcttttagcctcaggagacggcaaaagaact 120
Query: 382 gccactattgttggcgatgtctatatccatccatctgccaaggtgcatcctacttcaaag 441
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gccactattgttggtgatgtgtatatccatccatctgccaaggtgcatcctacttcaaag 180
Query: 442 attggcccaaatgtctctatatcagcaaatgcacgcgttggagctggtgccaggcttatc 501
|||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 181 attggccccaatgtctctatatcagcaaatgcgcgagttggagctggtgccaggcttatc 240
Query: 502 aattgcataattctggatgatgttgaaattatggaaaatgctgttgttatacattcaatt 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aattgcataattctggatgatgttgaaattatggaaaatgctgttgttatacattcaatt 300
Query: 562 gt-agggtggaaatcatccattggaaaatggtcacgtgtacagggcgaaggtgatcacaa 620
|| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 301 gtgngggtggaagtcatccattggaaaatggtcacgtgtgcagggcgaaggcgatcacaa 360
Query: 621 tgccaaacttggcattactattcttggtgaagccgttgatgttgaagatgaagtagttgt 680
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 361 tgccaaacttggcattactattcttggtgaagcagttgatgttgaagatgaagtagttgt 420
Query: 681 agttaacagcatcgtgctcccaaataaaactctcaatgtcagtgtccaagaggagatcat 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agttaacagcatcgtgctcccaaataaaactctcaatgtcagtgtccaagaggagatcat 480
Query: 741 cctataataaccatcattttttgtctaattccatataaggtctgagtaccaatcacatag 800
||||||||| | ||||||||| | | || | | ||||||||||||||||||||||||||
Sbjct: 481 cctataatagctgtcatttttt-ttttatcctaaataaggtctgagtaccaatcacatag 539
Query: 801 tttaagtttattcgttctcaccatgtaatgtaaccttccattagatcgagattattagtt 860
|||| | ||||||||||||||| |||||| |||||||||||| || ||||||||||
Sbjct: 540 tttatgcttattcgttctcaccttgtaat-----cttccattagattgatattattagtt 594
Query: 861 tgcatttatacctgtcttgcagcatgacactgcgcaatcttgacttgctatgctactttg 920
|| || |||||| ||||||||||||| ||||| |||| |||||||| ||||||||||||
Sbjct: 595 tgtatctatacccatcttgcagcatgatactgcacaatattgacttggtatgctactttg 654
>gb|CF482678.1|CF482678 POL1_8_A10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_8_A10_A002 5', mRNA sequence
Length = 670
Score = 926 bits (467), Expect = 0.0
Identities = 598/641 (93%), Gaps = 8/641 (1%)
Strand = Plus / Minus
Query: 350 atcttttagcctcaggagatggcaaaagaactgccactattgttggcgatgtctatatcc 409
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 670 atcttttagcctcaggagacggcaaaagaactgccactattgttggcgatgtgtatatcc 611
Query: 410 atccatctgccaaggtgcatcctacttcaaagattggcccaaatgtctctatatcagcaa 469
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 610 atccatctgccaaggtgcatcctacttcaaagattggccccaatgtctctatatcagcaa 551
Query: 470 atgcacgcgttggagctggtgccaggcttatcaattgcataattctggatgatgttgaaa 529
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 atgcgcgagttggagctggtgccaggcttatcaattgcataattctggatgatgttgaaa 491
Query: 530 ttatggaaaatgctgttgttatacattcaattgtagggtggaaatcatccattggaaaat 589
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 490 ttatggaaaatgctgttgttatacattcaattgtggggtggaagtcatccattggaaaat 431
Query: 590 ggtcacgtgtacagggcgaaggtgatcacaatgccaaacttggcattactattcttggtg 649
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 430 ggtcacgtgtacagggcgaaggcgatcacaatgccaaacttggcattactattcttggtg 371
Query: 650 aagccgttgatgttgaagatgaagtagttgtagttaacagcatcgtgctcccaaataaaa 709
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aagcagttgatgttgaagatgaagtagttgtagttaacagcatcgtgctcccaaataaaa 311
Query: 710 ctctcaatgtcagtgtccaagaggagatcatcctataataac---catcattttttgtct 766
|||||||||||||||||||||||||||||||||||||||| | ||| |||||||| |
Sbjct: 310 ctctcaatgtcagtgtccaagaggagatcatcctataatagctgtcatttttttttgttt 251
Query: 767 aattccatataaggtctgagtaccaatcacatagtttaagtttattcgttctcaccatgt 826
|| ||| ||||||||| |||||||||||||||||||| | ||||||||||||||| |||
Sbjct: 250 tatcccaaataaggtctcagtaccaatcacatagtttatgcttattcgttctcaccttgt 191
Query: 827 aatgtaaccttccattagatcgagattattagtttgcatttatacctgtcttgcagcatg 886
||| |||||||||||| || |||||||||||| || |||||| ||||||||||||
Sbjct: 190 aat-----cttccattagattgatattattagtttgtatctatacccatcttgcagcatg 136
Query: 887 acactgcgcaatcttgacttgctatgctactttggttagcgattgtggtgatgtaaaaaa 946
| ||||| |||| ||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 135 atactgcacaatattgacttgctatgctactttggttagcgagcgcggtgatgtaaaaaa 76
Query: 947 tgtacaaacaggtgacaccattttttgtgagaatgactgaa 987
|||||||||||||||||||| |||| ||||||||||||||
Sbjct: 75 tgtacaaacaggtgacaccaattttgttgagaatgactgaa 35
>gb|CF489062.1|CF489062 POL1_54_D10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_54_D10_A002 3', mRNA sequence
Length = 636
Score = 918 bits (463), Expect = 0.0
Identities = 594/637 (93%), Gaps = 8/637 (1%)
Strand = Plus / Plus
Query: 354 tttagcctcaggagatggcaaaagaactgccactattgttggcgatgtctatatccatcc 413
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 tttagcctcaggagacggcaaaagaactgccactattgttggcgatgtgtatatccatcc 60
Query: 414 atctgccaaggtgcatcctacttcaaagattggcccaaatgtctctatatcagcaaatgc 473
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 61 atctgccaaggtgcatcctacttcaaagattggccccaatgtctctatatcagcaaatgc 120
Query: 474 acgcgttggagctggtgccaggcttatcaattgcataattctggatgatgttgaaattat 533
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcgagttggagctggtgccaggcttatcaattgcataattctggatgatgttgaaattat 180
Query: 534 ggaaaatgctgttgttatacattcaattgtagggtggaaatcatccattggaaaatggtc 593
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 181 ggaaaatgctgttgttatacattcaattgtggggtggaagtcatccattggaaaatggtc 240
Query: 594 acgtgtacagggcgaaggtgatcacaatgccaaacttggcattactattcttggtgaagc 653
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acgtgtacagggcgaaggcgatcacaatgccaaacttggcattactattcttggtgaagc 300
Query: 654 cgttgatgttgaagatgaagtagttgtagttaacagcatcgtgctcccaaataaaactct 713
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agttgatgttgaagatgaagtagttgtagttaacagcatcgtgctcccaaataaaactct 360
Query: 714 caatgtcagtgtccaagaggagatcatcctataataac---catcattttttgtctaatt 770
|||||||||||||||||||||||||||||||||||| | ||| |||||||| | ||
Sbjct: 361 caatgtcagtgtccaagaggagatcatcctataatagctgtcatttttttttgttttatc 420
Query: 771 ccatataaggtctgagtaccaatcacatagtttaagtttattcgttctcaccatgtaatg 830
||| ||||||||| |||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 421 ccaaataaggtctcagtaccaatcacatagtttatgcttattcgttctcaccttgtaat- 479
Query: 831 taaccttccattagatcgagattattagtttgcatttatacctgtcttgcagcatgacac 890
|||||||||||| || |||||||||||| || |||||| ||||||||||||| ||
Sbjct: 480 ----cttccattagattgatattattagtttgtatctatacccatcttgcagcatgatac 535
Query: 891 tgcgcaatcttgacttgctatgctactttggttagcgattgtggtgatgtaaaaaatgta 950
||| |||| ||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 536 tgcacaatattgacttgctatgctactttggttagcgagcgcggtgatgtaaaaaatgta 595
Query: 951 caaacaggtgacaccattttttgtgagaatgactgaa 987
|||||||||||||||| |||| ||||||||||||||
Sbjct: 596 caaacaggtgacaccaattttgttgagaatgactgaa 632
>gb|CN142281.1|CN142281 WOUND1_9_B02.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_9_B02_A002 3', mRNA sequence
Length = 650
Score = 890 bits (449), Expect = 0.0
Identities = 583/627 (92%), Gaps = 8/627 (1%)
Strand = Plus / Plus
Query: 364 ggagatggcaaaagaactgccactattgttggcgatgtctatatccatccatctgccaag 423
||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 1 ggagacggcaaaagaactgccactattgtgggcgatgtgtatatccatccatctgccaag 60
Query: 424 gtgcatcctacttcaaagattggcccaaatgtctctatatcagcaaatgcacgcgttgga 483
|||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct: 61 gtgcatcctacttcaaagattggccccaatgtctctatatcagcaaatgcgcgagttgga 120
Query: 484 gctggtgccaggcttatcaattgcataattctggatgatgttgaaattatggaaaatgct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gctggtgccaggcttatcaattgcataattctggatgatgttgaaattatggaaaatgct 180
Query: 544 gttgttatacattcaattgtagggtggaaatcatccattggaaaatggtcacgtgtacag 603
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 181 gttgttatacattcaattgtggggtggaagtcatccattggaaaatggtcacgtgtacag 240
Query: 604 ggcgaaggtgatcacaatgccaaacttggcattactattcttggtgaagccgttgatgtt 663
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 241 ggcgaaggcgatcacaatgccaaacttggcattactattcttggtgaagcagttgatgtt 300
Query: 664 gaagatgaagtagttgtagttaacagcatcgtgctcccaaataaaactctcaatgtcagt 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaagatgaagtagttgtagttaacagcatcgtgctcccaaataaaactctcaatgtcagt 360
Query: 724 gtccaagaggagatcatcctataataac---catcattttttgtctaattccatataagg 780
|||||||||||||||||||||||||| | ||| |||||||| | || ||| ||||||
Sbjct: 361 gtccaagaggagatcatcctataatagctgtcatttttttttgttttatcccaaataagg 420
Query: 781 tctgagtaccaatcacatagtttaagtttattcgttctcaccatgtaatgtaaccttcca 840
||| |||||||||||||||||||| | ||||||||||||||| |||||| ||||||
Sbjct: 421 tctcagtaccaatcacatagtttatgcttattcgttctcaccttgtaat-----cttcca 475
Query: 841 ttagatcgagattattagtttgcatttatacctgtcttgcagcatgacactgcgcaatct 900
|||||| || |||||||||||| || |||||| ||||||||||||| ||||| |||| |
Sbjct: 476 ttagattgatattattagtttgtatctatacccatcttgcagcatgatactgcacaatat 535
Query: 901 tgacttgctatgctactttggttagcgattgtggtgatgtaaaaaatgtacaaacaggtg 960
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 536 tgacttgctatgctactttggttagcgagcgcggtgatgtaaaaaatgtacaaacaggtg 595
Query: 961 acaccattttttgtgagaatgactgaa 987
|||||| |||| ||||||||||||||
Sbjct: 596 acaccaattttgttgagaatgactgaa 622
>gb|CF770756.1|CF770756 DSBF1_9_C10.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_9_C10_A010 3', mRNA sequence
Length = 594
Score = 835 bits (421), Expect = 0.0
Identities = 545/585 (93%), Gaps = 6/585 (1%)
Strand = Plus / Plus
Query: 403 tatatccatccatctgccaaggtgcatcctacttcaaagattggcccaaatgtctctata 462
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 tatatccatccatctgccaaggtgcatcctacttcaaagattggccccaatgtctctata 60
Query: 463 tcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataattctggatgat 522
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcagcaaatgcgcgagttggagctggtgccaggcttatcaattgcataattctggatgat 120
Query: 523 gttgaaattatggaaaatgctgttgttatacattcaattgtagggtggaaatcatccatt 582
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 121 gttgaaattatggaaaatgctgttgttatacattcaattgtggggtggaagtcatccatt 180
Query: 583 ggaaaatggtcacgtgtacagggcgaaggtgatcacaatgccaaacttggcattactatt 642
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 181 ggaaaatggtcacgtgtgcagggcgaaggcgatcacaatgccaaacttggcattactatt 240
Query: 643 cttggtgaagccgttgatgttgaagatgaagtagttgtagttaacagcatcgtgctccca 702
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cttggtgaagcagttgatgttgaagatgaagtagttgtagttaacagcatcgtgctccca 300
Query: 703 aataaaactctcaatgtcagtgtccaagaggagatcatcctataataaccatcatttttt 762
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 301 aataaaactctcaatgtcagtgtccaagaggagatcatcctataatagctgtcatttttt 360
Query: 763 gtctaattccatataaggtctgagtaccaatcacatagtttaagtttattcgttctcacc 822
| | || | | |||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 361 -ttttatcctaaataaggtctgagtaccaatcacatagtttatgcttattcgttctcacc 419
Query: 823 atgtaatgtaaccttccattagatcgagattattagtttgcatttatacctgtcttgcag 882
|||||| |||||||||||| || |||||||||||| || |||||| ||||||||
Sbjct: 420 ttgtaat-----cttccattagattgatattattagtttgtatctatacccatcttgcag 474
Query: 883 catgacactgcgcaatcttgacttgctatgctactttggttagcgattgtggtgatgtaa 942
||||| ||||| |||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 475 catgatactgcacaatattgacttggtatgctactttggttagcgagcgtggtgatgtaa 534
Query: 943 aaaatgtacaaacaggtgacaccattttttgtgagaatgactgaa 987
|||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 535 aaaatgtacaaacaggtgacaccaattttgttgagaatgactgaa 579
>gb|CD231553.1|CD231553 SS1_22_A04.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_22_A04_A012 3', mRNA sequence
Length = 577
Score = 813 bits (410), Expect = 0.0
Identities = 537/579 (92%), Gaps = 9/579 (1%)
Strand = Plus / Plus
Query: 397 gatgtctatatccatccatctgccaaggtgcatcctacttcaaagattggcccaaatgtc 456
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 gatgtgtatatccatccatctgccaaggtgcatcctacttcaaagattggccccaatgtc 60
Query: 457 tctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataattctg 516
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctatatcagcaaatgcgcgagttggagctggtgccaggcttatcaattgcataattctg 120
Query: 517 gatgatgttgaaattatggaaaatgctgttgttatacattcaattgtagggtggaaatca 576
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct: 121 gatgatgttgaaattatggaaaatgctgttgttatgcattcaattgtggggtggaagtca 180
Query: 577 tccattggaaaatggtcacgtgtacagggcgaaggtgatcacaatgccaaacttggcatt 636
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 181 tccattggaaaatggtcacgtgtacagggcgaaggcgatcacaatgccaaacttggcatt 240
Query: 637 actattcttggtgaagccgttgatgttgaagatgaagtagttgtagttaacagcatcgtg 696
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 actattcttggtgaagcagttgatgttgaagatgaagtagttgtagttaacagcatcgtg 300
Query: 697 ctcccaaataaaactctcaatgtcagtgtccaagaggagatcatcctataataaccatca 756
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 301 ctcccaaataaaactctcaatgtcagtgtccaagaggagatcatcctataatagctgtca 360
Query: 757 ----ttttttgtctaattccatataaggtctgagtaccaatcacatagtttaagtttatt 812
|||||||| | || ||| ||||||||| |||||||||||||||||||| | |||||
Sbjct: 361 ttttttttttgttttatcccaaataaggtctcagtaccaatcacatagtttatgcttatt 420
Query: 813 cgttctcaccatgtaatgtaaccttccattagatcgagattattagtttgcatttatacc 872
|||||||||| |||||| |||||||||||| || |||||||||||| || ||||||
Sbjct: 421 cgttctcaccttgtaat-----cttccattagattgatattattagtttgtatctatacc 475
Query: 873 tgtcttgcagcatgacactgcgcaatcttgacttgctatgctactttggttagcgattgt 932
||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| |
Sbjct: 476 catcttgcagcatgatactgcacaatattgacttgctatgctactttggttagcgagcgc 535
Query: 933 ggtgatgtaaaaaatgtacaaacaggtgacaccattttt 971
|||||||||||||||||||||||||||||||||| ||||
Sbjct: 536 ggtgatgtaaaaaatgtacaaacaggtgacaccaatttt 574
>gb|BM330645.1|BM330645 PIC1_54_F06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 573
Score = 793 bits (400), Expect = 0.0
Identities = 525/566 (92%), Gaps = 8/566 (1%)
Strand = Plus / Plus
Query: 425 tgcatcctacttcaaagattggcccaaatgtctctatatcagcaaatgcacgcgttggag 484
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct: 1 tgcatcctacttcaaagattggccccaatgtctctatatcagcaaatgcgcgagttggag 60
Query: 485 ctggtgccaggcttatcaattgcataattctggatgatgttgaaattatggaaaatgctg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctggtgccaggcttatcaattgcataattctggatgatgttgaaattatggaaaatgctg 120
Query: 545 ttgttatacattcaattgtagggtggaaatcatccattggaaaatggtcacgtgtacagg 604
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 121 ttgttatacattcaattgtggggtggaagtcatccattggaaaatggtcacgtgtacagg 180
Query: 605 gcgaaggtgatcacaatgccaaacttggcattactattcttggtgaagccgttgatgttg 664
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 181 gcgaaggcgatcacaatgccaaacttggcattactattcttggtgaagcagttgatgttg 240
Query: 665 aagatgaagtagttgtagttaacagcatcgtgctcccaaataaaactctcaatgtcagtg 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagatgaagtagttgtagttaacagcatcgtgctcccaaataaaactctcaatgtcagtg 300
Query: 725 tccaagaggagatcatcctataataac---catcattttttgtctaattccatataaggt 781
||||||||||||||||||||||||| | ||| |||||||| | || ||| |||||||
Sbjct: 301 tccaagaggagatcatcctataatagctgtcatttttttttgttttatcccaaataaggt 360
Query: 782 ctgagtaccaatcacatagtttaagtttattcgttctcaccatgtaatgtaaccttccat 841
|| |||||||||||||||||||| | ||||||||||||||| |||||| |||||||
Sbjct: 361 ctcagtaccaatcacatagtttatgcttattcgttctcaccttgtaat-----cttccat 415
Query: 842 tagatcgagattattagtttgcatttatacctgtcttgcagcatgacactgcgcaatctt 901
||||| || |||||||||||| || |||||| ||||||||||||| ||||| |||| ||
Sbjct: 416 tagattgatattattagtttgtatctatacccatcttgcagcatgatactgcacaatatt 475
Query: 902 gacttgctatgctactttggttagcgattgtggtgatgtaaaaaatgtacaaacaggtga 961
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 476 gacttgctatgctactttggttagcgagcgcggtgatgtaaaaaatgtacaaacaggtga 535
Query: 962 caccattttttgtgagaatgactgaa 987
||||| |||| ||||||||||||||
Sbjct: 536 caccaattttgttgagaatgactgaa 561
>gb|CB926914.1|CB926914 ABA1_11_H09.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_11_H09_A012 3', mRNA sequence
Length = 538
Score = 724 bits (365), Expect = 0.0
Identities = 490/531 (92%), Gaps = 8/531 (1%)
Strand = Plus / Plus
Query: 460 atatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataattctggat 519
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atatcagcaaatgcgcgagttggagctggtgccaggcttatcaattgcataattctggat 60
Query: 520 gatgttgaaattatggaaaatgctgttgttatacattcaattgtagggtggaaatcatcc 579
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 61 gatgttgaaattatggaaaatgctgttgttatgcattcaattgtggggtggaagtcatcc 120
Query: 580 attggaaaatggtcacgtgtacagggcgaaggtgatcacaatgccaaacttggcattact 639
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 121 attggaaaatggtcacgtgtacagggcgaaggcgatcacaatgccaaacttggcattact 180
Query: 640 attcttggtgaagccgttgatgttgaagatgaagtagttgtagttaacagcatcgtgctc 699
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attcttggtgaagcagttgatgttgaagatgaagtagttgtagttaacagcatcgtgctc 240
Query: 700 ccaaataaaactctcaatgtcagtgtccaagaggagatcatcctataataac---catca 756
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 241 ccaaataaaactctcaatgtcagtgtccaagaggagatcatcctataatagctgtcattt 300
Query: 757 ttttttgtctaattccatataaggtctgagtaccaatcacatagtttaagtttattcgtt 816
|||||||| | || ||| ||||||||| |||||||||||||||||||| | |||||||||
Sbjct: 301 ttttttgttttatcccaaataaggtctcagtaccaatcacatagtttatgcttattcgtt 360
Query: 817 ctcaccatgtaatgtaaccttccattagatcgagattattagtttgcatttatacctgtc 876
|||||| |||||| |||||||||||| || |||||||||||| || |||||| ||
Sbjct: 361 ctcaccttgtaat-----cttccattagattgatattattagtttgtatctatacccatc 415
Query: 877 ttgcagcatgacactgcgcaatcttgacttgctatgctactttggttagcgattgtggtg 936
||||||||||| ||||| |||| ||||||||||||||||||||||||||||| | ||||
Sbjct: 416 ttgcagcatgatactgcacaatattgacttgctatgctactttggttagcgagcgcggtg 475
Query: 937 atgtaaaaaatgtacaaacaggtgacaccattttttgtgagaatgactgaa 987
|||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 476 atgtaaaaaatgtacaaacaggtgacaccaattttgttgagaatgactgaa 526
>gb|CX611385.1|CX611385 ANR1_24_H01.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_24_H01_A002 3', mRNA sequence
Length = 534
Score = 712 bits (359), Expect = 0.0
Identities = 488/530 (92%), Gaps = 7/530 (1%)
Strand = Plus / Plus
Query: 460 atatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataattctggat 519
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atatcagcaaatgcgcgagttggagctggtgccaggcttatcaattgcataattctggat 60
Query: 520 gatgttgaaattatggaaaatgctgttgttatacattcaattgtagggtggaaatcatcc 579
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 61 gatgttgagattatggaaaatgctgttgttatacattcaattgtggggtggaagtcatcc 120
Query: 580 attggaaaatggtcacgtgtacagggcgaaggtgatcacaatgccaaacttggcattact 639
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 121 attggaaaatggtcacgtgtacagggggaaggcgatcacaatgccaaacttggcattact 180
Query: 640 attcttggtgaagccgttgatgttgaagatgaagtagttgtagttaacagcatcgtgctc 699
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attcttggtgaagcagttgatgttgaagatgaagtagttgtagttaacagcatcgtgctc 240
Query: 700 ccaaataaaactctcaatgtcagtgtccaagaggagatcatcctataataaccatca--t 757
|||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct: 241 ccaaataaaactttcaatgtcagtgtccaagaggagatcatcctataatagcggtcattt 300
Query: 758 tttttgtctaattccatataaggtctgagtaccaatcacatagtttaagtttattcgttc 817
||||||| | || ||| ||||||||| |||||||||||||||||||| | ||||||||||
Sbjct: 301 tttttgttttatcccaaataaggtctcagtaccaatcacatagtttatgcttattcgttc 360
Query: 818 tcaccatgtaatgtaaccttccattagatcgagattattagtttgcatttatacctgtct 877
||||| |||||| |||||||||||| || |||||||||||| || |||||| |||
Sbjct: 361 tcaccttgtaat-----cttccattagattgatattattagtttgtatctatacccatct 415
Query: 878 tgcagcatgacactgcgcaatcttgacttgctatgctactttggttagcgattgtggtga 937
|||||||||| ||||| |||| ||||||||||||||||||||||||||||| | |||||
Sbjct: 416 tgcagcatgatactgcacaatattgacttgctatgctactttggttagcgagcgcggtga 475
Query: 938 tgtaaaaaatgtacaaacaggtgacaccattttttgtgagaatgactgaa 987
||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 476 tgtaaaaaatgtacaaacaggtgacaccaattttgttgagaatgactgaa 525
>gb|AW286516.2|AW286516 LG1_333_H05.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 513
Score = 690 bits (348), Expect = 0.0
Identities = 467/506 (92%), Gaps = 8/506 (1%)
Strand = Plus / Plus
Query: 485 ctggtgccaggcttatcaattgcataattctggatgatgttgaaattatggaaaatgctg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctggtgccaggcttatcaattgcataattctggatgatgttgaaattatggaaaatgctg 60
Query: 545 ttgttatacattcaattgtagggtggaaatcatccattggaaaatggtcacgtgtacagg 604
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 61 ttgttatacattcaattgtggggtggaagtcatccattggaaaatggtcacgtgtacagg 120
Query: 605 gcgaaggtgatcacaatgccaaacttggcattactattcttggtgaagccgttgatgttg 664
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 121 gcgaaggcgatcacaatgccaaacttggcattactattcttggtgaagcagttgatgttg 180
Query: 665 aagatgaagtagttgtagttaacagcatcgtgctcccaaataaaactctcaatgtcagtg 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagatgaagtagttgtagttaacagcatcgtgctcccaaataaaactctcaatgtcagtg 240
Query: 725 tccaagaggagatcatcctataataac---catcattttttgtctaattccatataaggt 781
||||||||||||||||||||||||| | ||| |||||||| | || ||| |||||||
Sbjct: 241 tccaagaggagatcatcctataatagctgtcatttttttttgttttatcccaaataaggt 300
Query: 782 ctgagtaccaatcacatagtttaagtttattcgttctcaccatgtaatgtaaccttccat 841
|| |||||||||||||||||||| | ||||||||||||||| |||||| |||||||
Sbjct: 301 ctcagtaccaatcacatagtttatgcttattcgttctcaccttgtaat-----cttccat 355
Query: 842 tagatcgagattattagtttgcatttatacctgtcttgcagcatgacactgcgcaatctt 901
||||| || |||||||||||| || |||||| ||||||||||||| ||||| |||| ||
Sbjct: 356 tagattgatattattagtttgtatctatacccatcttgcagcatgatactgcacaatatt 415
Query: 902 gacttgctatgctactttggttagcgattgtggtgatgtaaaaaatgtacaaacaggtga 961
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 416 gacttgctatgctactttggttagcgagcgcggtgatgtaaaaaatgtacaaacaggtga 475
Query: 962 caccattttttgtgagaatgactgaa 987
| ||| |||| ||||||||||||||
Sbjct: 476 ccccaattttgttgagaatgactgaa 501
>gb|CF772714.1|CF772714 DSBF1_38_D12.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_38_D12_A010 3', mRNA sequence
Length = 380
Score = 472 bits (238), Expect = e-131
Identities = 341/374 (91%), Gaps = 6/374 (1%)
Strand = Plus / Plus
Query: 614 atcacaatgccaaacttggcattactattcttggtgaagccgttgatgttgaagatgaag 673
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 atcacaatgccaaacttggcattactattcttggtgaagcagttgatgttgaagatgaag 60
Query: 674 tagttgtagttaacagcatcgtgctcccaaataaaactctcaatgtcagtgtccaagagg 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tagttgtagttaacagcatcgtgctcccaaataaaactctcaatgtcagtgtccaagagg 120
Query: 734 agatcatcctataataaccatcattttttgtctaattccatataaggtctgagtaccaat 793
|||||||||||||||| | ||||||||| | | || | | |||||||||||||||||||
Sbjct: 121 agatcatcctataatagctgtcatttttt-ttttatcctaaataaggtctgagtaccaat 179
Query: 794 cacatagtttaagtttattcgttctcaccatgtaatgtaaccttccattagatcgagatt 853
||||||||||| | ||||||||||||||| |||||| |||||||||||| || |||
Sbjct: 180 cacatagtttatgcttattcgttctcaccttgtaat-----cttccattagattgatatt 234
Query: 854 attagtttgcatttatacctgtcttgcagcatgacactgcgcaatcttgacttgctatgc 913
||||||||| || |||||| ||||||||||||| ||||| |||| |||||||| |||||
Sbjct: 235 attagtttgtatctatacccatcttgcagcatgatactgcacaatattgacttggtatgc 294
Query: 914 tactttggttagcgattgtggtgatgtaaaaaatgtacaaacaggtgacaccattttttg 973
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 295 tactttggttagcgagcgtggtgatgtaaaaaatgtacaaacaggtgacaccaattttgt 354
Query: 974 tgagaatgactgaa 987
||||||||||||||
Sbjct: 355 tgagaatgactgaa 368
>gb|CN136092.1|CN136092 OX1_40_F04.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_40_F04_A002 5', mRNA sequence
Length = 761
Score = 309 bits (156), Expect = 3e-082
Identities = 232/256 (90%), Gaps = 4/256 (1%)
Strand = Plus / Plus
Query: 1 gaactgctgcactatacggaaaagccggagacttt-gtgagtgatctcataaattgcgga 59
||||||| |||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct: 508 gaactgccgcactatacggaaaagccagagacttttgtgagtgatctcataaattgtgga 567
Query: 60 g-atatatatttactcccgatatccttagcgccattgaggatgtcttaaaacagaaaaaa 118
| |||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct: 568 gtatatatatttactcccaatatctttagcgccgttgaggatgtcttaaaacagaaaaag 627
Query: 119 gacagagcaaatttgnnnnnnnngtatctagcattgaagctcttcattcagcaactaagg 178
||||||||| ||||| |||||| || ||||||||||||||||||||| ||||
Sbjct: 628 gacagagcagatttgcggcgt--gtatctngctgtgaagctcttcattcagcaaccaagg 685
Query: 179 cgcttccaccagactttgttaggttagatcaagacattttatcccctcgagcgggaaaga 238
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 cgcttccaccagaccttgttaggttagatcaagacattttatcccctcgagcgggaaaga 745
Query: 239 aggagctgtacacata 254
| ||||||||||||||
Sbjct: 746 aagagctgtacacata 761
>gb|CW089860.1|CW089860 104_435_10948953_114_32588_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948953, DNA
sequence
Length = 770
Score = 256 bits (129), Expect = 3e-066
Identities = 144/149 (96%)
Strand = Plus / Minus
Query: 293 ggatgtctttgagatgctctgggttatatctctctcagtttcgccatacctctcctcatc 352
||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||
Sbjct: 605 ggatgtctttgagatgctctgggttatatctttctcagttccgccgtacctctcctcatc 546
Query: 353 ttttagcctcaggagatggcaaaagaactgccactattgttggcgatgtctatatccatc 412
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 545 ttttagcctcaggagacggcaaaagaactgccactattgttggcgatgtgtatatccatc 486
Query: 413 catctgccaaggtgcatcctacttcaaag 441
|||||||||||||||||||||||||||||
Sbjct: 485 catctgccaaggtgcatcctacttcaaag 457
Score = 167 bits (84), Expect = 2e-039
Identities = 93/96 (96%)
Strand = Plus / Minus
Query: 440 agattggcccaaatgtctctatatcagcaaatgcacgcgttggagctggtgccaggctta 499
|||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 306 agattggccccaatgtctctatatcagcaaatgcgcgagttggagctggtgccaggctta 247
Query: 500 tcaattgcataattctggatgatgttgaaattatgg 535
||||||||||||||||||||||||||||||||||||
Sbjct: 246 tcaattgcataattctggatgatgttgaaattatgg 211
Score = 125 bits (63), Expect = 8e-027
Identities = 90/95 (94%), Gaps = 3/95 (3%)
Strand = Plus / Minus
Query: 200 ggttagatcaagacattttatcccctcgagcgggaaagaaggagctgtacacataccaga 259
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 770 ggttagatcaagacattt-atcccctcgagcgg-aaagaaggagctgtacacataccaga 713
Query: 260 cacttgatttctgggaacagatcaaaaccccaggg 294
| |||||||| | ||||||||||||||||||||||
Sbjct: 712 cgcttgattt-ttggaacagatcaaaaccccaggg 679
Score = 125 bits (63), Expect = 8e-027
Identities = 69/71 (97%)
Strand = Plus / Minus
Query: 534 ggaaaatgctgttgttatacattcaattgtagggtggaaatcatccattggaaaatggtc 593
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 112 ggaaaatgctgttgttatacattcaattgtggggtggaagtcatccattggaaaatggtc 53
Query: 594 acgtgtacagg 604
|||||||||||
Sbjct: 52 acgtgtacagg 42
>gb|CW089861.1|CW089861 104_435_10948953_116_32598_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948953, DNA
sequence
Length = 714
Score = 256 bits (129), Expect = 3e-066
Identities = 144/149 (96%)
Strand = Plus / Plus
Query: 293 ggatgtctttgagatgctctgggttatatctctctcagtttcgccatacctctcctcatc 352
||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||
Sbjct: 327 ggatgtctttgagatgctctgggttatatctttctcagttccgccgtacctctcctcatc 386
Query: 353 ttttagcctcaggagatggcaaaagaactgccactattgttggcgatgtctatatccatc 412
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 387 ttttagcctcaggagacggcaaaagaactgccactattgttggcgatgtgtatatccatc 446
Query: 413 catctgccaaggtgcatcctacttcaaag 441
|||||||||||||||||||||||||||||
Sbjct: 447 catctgccaaggtgcatcctacttcaaag 475
Score = 218 bits (110), Expect = 8e-055
Identities = 116/118 (98%)
Strand = Plus / Plus
Query: 177 ggcgcttccaccagactttgttaggttagatcaagacattttatcccctcgagcgggaaa 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ggcgcttccaccagactttgttaggttagatcaagacattttatcccctcgagcgggaaa 195
Query: 237 gaaggagctgtacacataccagacacttgatttctgggaacagatcaaaaccccaggg 294
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 196 gaaggagctgtacacataccagacgcttgatttttgggaacagatcaaaaccccaggg 253
Score = 121 bits (61), Expect = 1e-025
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 440 agattggcccaaatgtctctatatcagcaaatgcacgcgttggagctggtgccaggctta 499
|||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 626 agattggccccaatgtctctatatcagcaaatgcgcgagttggagctggtgccaggctta 685
Query: 500 tcaattgcataat 512
|||||||||||||
Sbjct: 686 tcaattgcataat 698
>gb|BM325934.1|BM325934 PIC1_54_F06.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 557
Score = 206 bits (104), Expect = 3e-051
Identities = 165/184 (89%), Gaps = 4/184 (2%)
Strand = Plus / Plus
Query: 1 gaactgctgcactatacggaaaagccggagacttt-gtgagtgatctcataaattgcgga 59
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct: 376 gaactgctgcactatacggaaaagccagagacttttgtgagtgatctcataaattgtgga 435
Query: 60 g-atatatatttactcccgatatccttagcgccattgaggatgtcttaaaacagaaaaaa 118
| |||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct: 436 gtatatatatttactcccaatatctttagcgccattgaggatgtcttaaaacagagaaag 495
Query: 119 gacagagcaaatttgnnnnnnnngtatctagcattgaagctcttcattcagcaactaagg 178
||||||||| ||||| ||||||||| |||||||||||||||||||||| ||||
Sbjct: 496 gacagagcanatttg--cggcgtgtatctagctttgaagctcttcattcagcaaccaagg 553
Query: 179 cgct 182
||||
Sbjct: 554 cgct 557
>gb|CN142353.1|CN142353 WOUND1_9_B02.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_9_B02_A002 5', mRNA sequence
Length = 680
Score = 172 bits (87), Expect = 4e-041
Identities = 113/119 (94%), Gaps = 2/119 (1%)
Strand = Plus / Plus
Query: 1 gaactgctgcactatacggaaaagccggagacttt-gtgagtgatctcataaattgcgga 59
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct: 558 gaactgctgcactatacggaaaagccagagacttttgtgagtgatctcataaattgtgga 617
Query: 60 g-atatatatttactcccgatatccttagcgccattgaggatgtcttaaaacagaaaaa 117
| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 618 gtatatatatttactcccaatatctttagcgccattgaggatgtcttaaaacagaaaaa 676
>gb|CW132202.1|CW132202 104_515_11116084_148_34793_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116084, DNA
sequence
Length = 669
Score = 153 bits (77), Expect = 4e-035
Identities = 104/113 (92%)
Strand = Plus / Plus
Query: 875 tcttgcagcatgacactgcgcaatcttgacttgctatgctactttggttagcgattgtgg 934
||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| | ||
Sbjct: 14 tcttgcagcatgatactgcacaatattgacttgctatgctactttggttagcgagcgcgg 73
Query: 935 tgatgtaaaaaatgtacaaacaggtgacaccattttttgtgagaatgactgaa 987
|||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 74 tgatgtaaaaaatgtacaaacaggtgacaccaattttgttgagaatgactgaa 126
>gb|CW309793.1|CW309793 104_798_11469378_148_36242_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469378, DNA
sequence
Length = 673
Score = 127 bits (64), Expect = 2e-027
Identities = 82/88 (93%)
Strand = Plus / Plus
Query: 900 ttgacttgctatgctactttggttagcgattgtggtgatgtaaaaaatgtacaaacaggt 959
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 3 ttgacttgctatgctactttggttagcgagcgcggtgatgtaaaaaatgtacaaacaggt 62
Query: 960 gacaccattttttgtgagaatgactgaa 987
||||||| |||| ||||||||||||||
Sbjct: 63 gacaccaattttgttgagaatgactgaa 90
>gb|CD232638.1|CD232638 SS1_46_A04.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_46_A04_A012 5', mRNA sequence
Length = 617
Score = 89.7 bits (45), Expect = 5e-016
Identities = 58/61 (95%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 1 gaactgctgcactatacggaaaagccggagac-tttgtgagtgatctcataaattgcgga 59
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct: 550 gaactgctgcactatacggaaaagccagagacttttgtgagtgatctcataaattgtgga 609
Query: 60 g 60
|
Sbjct: 610 g 610
>gb|CW319061.1|CW319061 104_811_11474285_116_35880_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474285, DNA
sequence
Length = 664
Score = 42.1 bits (21), Expect = 0.097
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 249 cacataccagacacttgatttctgggaac 277
||||||||||||||||| |||||| ||||
Sbjct: 107 cacataccagacacttggtttctgtgaac 79
>gb|CW464613.1|CW464613 fsbb001f213p09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f213p09, DNA
sequence
Length = 694
Score = 42.1 bits (21), Expect = 0.097
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 249 cacataccagacacttgatttctgggaac 277
||||||||||||||||| |||||| ||||
Sbjct: 211 cacataccagacacttggtttctgtgaac 183
>gb|AW671301.1|AW671301 LG1_333_H05.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 556
Score = 42.1 bits (21), Expect = 0.097
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gaactgctgcactatacggaa 21
|||||||||||||||||||||
Sbjct: 536 gaactgctgcactatacggaa 556
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 275,091
Number of Sequences: 832831
Number of extensions: 275091
Number of successful extensions: 77117
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77048
Number of HSP's gapped (non-prelim): 36
length of query: 1000
length of database: 491,359,669
effective HSP length: 20
effective length of query: 980
effective length of database: 474,703,049
effective search space: 465208988020
effective search space used: 465208988020
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)