BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440806.2.2
(1155 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW461444.1|CW461444 fsbb001f209b20f0 Sorghum methylation... 712 0.0
gb|BE918829.1|BE918829 FM1_2_E02.g1_A003 Floral-Induced Mer... 583 e-164
gb|BG240961.1|BG240961 OV1_40_D10.g1_A002 Ovary 1 (OV1) Sor... 394 e-108
gb|BG240970.1|BG240970 OV1_40_E09.g1_A002 Ovary 1 (OV1) Sor... 394 e-108
gb|CW333050.1|CW333050 104_830_11481737_116_36040_065 Sorgh... 357 1e-096
gb|BF656908.1|BF656908 OV2_22_E07.g1_A002 Ovary 2 (OV2) Sor... 293 2e-077
gb|BG241283.1|BG241283 OV1_40_D10.b1_A002 Ovary 1 (OV1) Sor... 256 4e-066
gb|BG241293.1|BG241293 OV1_40_E09.b1_A002 Ovary 1 (OV1) Sor... 256 4e-066
gb|CW266971.1|CW266971 104_737_11400437_148_35293_031 Sorgh... 194 1e-047
gb|CW401009.1|CW401009 fsbb001f091j18f0 Sorghum methylation... 145 1e-032
gb|CW333051.1|CW333051 104_830_11481737_148_36039_065 Sorgh... 133 4e-029
gb|CW060595.1|CW060595 104_304_10519937_115_30144 Sorghum m... 123 4e-026
gb|CW160114.1|CW160114 104_566_11149711_148_36427_024 Sorgh... 111 1e-022
gb|BZ350471.1|BZ350471 ht56g09.g1 WGS-SbicolorF (JM107 adap... 76 8e-012
gb|CW160113.1|CW160113 104_566_11149711_116_36428_024 Sorgh... 66 8e-009
gb|CW230316.1|CW230316 104_679_11210473_148_37335_015 Sorgh... 60 5e-007
gb|CW060594.1|CW060594 104_304_10519937_114_30143 Sorghum m... 54 3e-005
gb|CL189041.1|CL189041 104_406_10902014_114_32468_063 Sorgh... 50 5e-004
gb|CW022866.1|CW022866 104_162_10432101_5_30000 Sorghum met... 50 5e-004
gb|BG560336.1|BG560336 RHIZ2_73_B09.b1_A003 Rhizome2 (RHIZ2... 50 5e-004
gb|CL189042.1|CL189042 104_406_10902014_116_32472_063 Sorgh... 46 0.007
gb|CW100366.1|CW100366 104_467_11004060_116_34389_036 Sorgh... 46 0.007
gb|CW253678.1|CW253678 104_717_11225229_148_35108_089 Sorgh... 46 0.007
gb|CW380541.1|CW380541 fsbb001f061g11k0 Sorghum methylation... 46 0.007
gb|AC169370.3| Sorghum bicolor clone SB_BBc0011I20, WORKING... 46 0.007
gb|CW222795.1|CW222795 104_658_11202566_116_37184_057 Sorgh... 42 0.11
gb|CW247959.1|CW247959 104_709_11222039_116_35029_094 Sorgh... 42 0.11
gb|CW247960.1|CW247960 104_709_11222039_148_35025_094 Sorgh... 42 0.11
gb|BZ340159.1|BZ340159 ic37b05.b1 WGS-SbicolorF (JM107 adap... 40 0.44
gb|CL165956.1|CL165956 104_361_10809026_116_31821_242 Sorgh... 40 0.44
gb|CL193687.1|CL193687 104_417_10941110_114_32276_055 Sorgh... 40 0.44
gb|CW034875.1|CW034875 104_265_10502822_114_30378 Sorghum m... 40 0.44
gb|CW155144.1|CW155144 104_557_11145978_116_36362_071 Sorgh... 40 0.44
gb|CW213095.1|CW213095 104_644_11191367_148_37027_088 Sorgh... 40 0.44
gb|CW220424.1|CW220424 104_655_11197342_116_37455_095 Sorgh... 40 0.44
gb|CW220425.1|CW220425 104_655_11197342_148_37454_095 Sorgh... 40 0.44
gb|CW303421.1|CW303421 104_787_11465229_116_35676_081 Sorgh... 40 0.44
gb|CW314773.1|CW314773 104_805_11472004_148_35820_006 Sorgh... 40 0.44
gb|CW352537.1|CW352537 fsbb001f014o01f0 Sorghum methylation... 40 0.44
gb|CW500662.1|CW500662 fsbb001f296b08k0 Sorghum methylation... 40 0.44
gb|CF434142.1|CF434142 NIT1_32_C06.g1_A002 Nitrogen-deficie... 40 0.44
>gb|CW461444.1|CW461444 fsbb001f209b20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f209b20, DNA
sequence
Length = 495
Score = 712 bits (359), Expect = 0.0
Identities = 461/495 (93%)
Strand = Plus / Minus
Query: 254 gacggcgtctccgtgctgtcgtccagcaacgtgtggatcgaccacgtgtccatgtccagc 313
|||||| |||| ||||||| ||||||| ||||||||||||||||||| |||||||| ||
Sbjct: 495 gacggcatctcggtgctgtggtccagccacgtgtggatcgaccacgtctccatgtcgagg 436
Query: 314 tgctccgacgggctgatcgacgtggtgaacgggtcgacggccatcaccgtgtccaacagc 373
||| |||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 435 tgcgccgacgggctcatcgacgtggtgaacgggtcgacggcgatcacggtgtccaacagc 376
Query: 374 cacttcaccgaccacgaccacgtgatgctgttcggcgccagcaacgacagcccgcaggac 433
|||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 375 cacttcacgcaccacgaccacgtgatgctgttcggccccagcaacgacaacccgcaggac 316
Query: 434 gcggtgatgcaggtcacggtggcgttcaaccacttcggccgcgggctggtgcagcggatg 493
| |||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 315 gaggtgatgcagatcacggtggcgttcaaccacttcggcagagggctggtgcagcggatg 256
Query: 494 ccgcgctgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatcatg 553
||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ccgcggtgccggtccgggttcttccacgtggtgaacaacgactacacgcactggatcatg 196
Query: 554 tacgccatcggcggcaacatgaaccccaccatcatcagccagggcaaccgcttcatcgcc 613
|||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||
Sbjct: 195 tacgccatcggcgggaacaagaaccccaccatcatcagccaggggaaccggttcatcgcc 136
Query: 614 cccgacgaccccaacgccaaggaggtgaccaagcgggagtacacgccgtacaaggactac 673
|||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 135 cccgacgatcccaacgccaaggaggtgaccaagagggagtacacggcgtacaaggactac 76
Query: 674 aaggagtgggtgtggaagtcgcagggcgacgtcatgatgaatggcgccttcttcaacgag 733
||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 75 aaggagtgggtctggaagtcgcagggagacgtcatgatgaacggcgccttcttcaacgag 16
Query: 734 tccggcggccagaac 748
|||||||| ||||||
Sbjct: 15 tccggcgggcagaac 1
>gb|BE918829.1|BE918829 FM1_2_E02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 539
Score = 583 bits (294), Expect = e-164
Identities = 339/354 (95%)
Strand = Plus / Plus
Query: 506 tacggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggc 565
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tacgggttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggc 64
Query: 566 ggcaacatgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgacgacccc 625
|| |||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct: 65 gggaacaagaaccccaccatcatcagccaggggaaccggttcatcgcccccgacgatccc 124
Query: 626 aacgccaaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggagtgggtg 685
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 125 aacgccaaggaggtgaccaagagggagtacacggcgtacaaggactacaaggagtgggtg 184
Query: 686 tggaagtcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggcggccag 745
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 185 tggaagtcgcagggagacgtcatgatgaacggcgccttcttcaacgagtccggcgggcag 244
Query: 746 aacgagcgcaagtacgacaggttcgacttcatcccggccaagcacggccgctacgtcggt 805
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 245 aacgagcgcaagtacgacgagctcgacttcatcccggccaagcacggccgctacgtcggc 304
Query: 806 cagctcacgcgcttcgccggaccactcaagtgcatcgtcggccagccgtgctag 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cagctcacgcgcttcgccggaccactcaagtgcatcgtcggccagccgtgctag 358
>gb|BG240961.1|BG240961 OV1_40_D10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 603
Score = 394 bits (199), Expect = e-108
Identities = 226/235 (96%)
Strand = Plus / Plus
Query: 625 caacgccaaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggagtgggt 684
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 153 caacgccaaggaggtgaccaagagggagtacacggcgtacaaggactacaaggagtgggt 212
Query: 685 gtggaagtcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggcggcca 744
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 213 gtggaagtcgcagggagacgtcatgatgaacggcgccttcttcaacgagtccggcgggca 272
Query: 745 gaacgagcgcaagtacgacaggttcgacttcatcccggccaagcacggccgctacgtcgg 804
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 273 gaacgagcgcaagtacgacgagctcgacttcatcccggccaagcacggccgctacgtcgg 332
Query: 805 tcagctcacgcgcttcgccggaccactcaagtgcatcgtcggccagccgtgctag 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ccagctcacgcgcttcgccggaccactcaagtgcatcgtcggccagccgtgctag 387
>gb|BG240970.1|BG240970 OV1_40_E09.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 602
Score = 394 bits (199), Expect = e-108
Identities = 226/235 (96%)
Strand = Plus / Plus
Query: 625 caacgccaaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggagtgggt 684
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 152 caacgccaaggaggtgaccaagagggagtacacggcgtacaaggactacaaggagtgggt 211
Query: 685 gtggaagtcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggcggcca 744
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 212 gtggaagtcgcagggagacgtcatgatgaacggcgccttcttcaacgagtccggcgggca 271
Query: 745 gaacgagcgcaagtacgacaggttcgacttcatcccggccaagcacggccgctacgtcgg 804
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 272 gaacgagcgcaagtacgacgagctcgacttcatcccggccaagcacggccgctacgtcgg 331
Query: 805 tcagctcacgcgcttcgccggaccactcaagtgcatcgtcggccagccgtgctag 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ccagctcacgcgcttcgccggaccactcaagtgcatcgtcggccagccgtgctag 386
>gb|CW333050.1|CW333050 104_830_11481737_116_36040_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481737, DNA
sequence
Length = 653
Score = 357 bits (180), Expect = 1e-096
Identities = 398/468 (85%), Gaps = 2/468 (0%)
Strand = Plus / Minus
Query: 321 acgggctgatcgacgtggtgaacgggtcgacggccatcaccgtgtccaacagccacttca 380
|||||||| | ||||||||| |||| || || ||| | ||| | |||||| |||||||||
Sbjct: 653 acgggctggtggacgtggtggacggctccaccgccgtgaccatctccaacggccacttca 594
Query: 381 ccgaccacgaccacgtgatgctgttcggcgccagcaacgacagcccgca-ggacgcggtg 439
|| ||||||||||||||||||||||| |||||| ||| | ||| || |||| || |
Sbjct: 593 ccaggcacgaccacgtgatgctgttcggtgccagcgacgcc-gccgtcaaggacaaggcg 535
Query: 440 atgcaggtcacggtggcgttcaaccacttcggccgcgggctggtgcagcggatgccgcgc 499
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 534 atgcaggtcaccgtggcgttcaaccacttcggaaaggggctggtgcagcggatgccgcgc 475
Query: 500 tgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgcc 559
|||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 474 tgccgccatggcttcttccacgtggtgaacaacgactacacgcactggctcatgtacgcc 415
Query: 560 atcggcggcaacatgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgac 619
|||||||||| | |||||| ||||||||||||||||| ||||| ||| |||| ||||
Sbjct: 414 atcggcggcagccagaaccctaccatcatcagccaggggaaccggttccgcgccgtcgac 355
Query: 620 gaccccaacgccaaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggag 679
||| | |||||||||||||||| |||||||||||||||||| || ||||||||
Sbjct: 354 gacgggaggttcaaggaggtgaccaagagggagtacacgccgtacagcgagtacaaggac 295
Query: 680 tgggtgtggaagtcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggc 739
||||||||||||||||||| |||| | | | ||||| |||||||||||| ||||||||
Sbjct: 294 tgggtgtggaagtcgcaggacgacctgttcctcaatggggccttcttcaaccagtccggc 235
Query: 740 ggccagaacgagcgcaagtacgacaggttcgacttcatcccggccaag 787
||| ||||||||||| || ||||||| ||||| |||||| |||||||
Sbjct: 234 ggcgagaacgagcgccggttcgacaggctcgacctcatccaggccaag 187
>gb|BF656908.1|BF656908 OV2_22_E07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 539
Score = 293 bits (148), Expect = 2e-077
Identities = 271/312 (86%)
Strand = Plus / Plus
Query: 476 gggctggtgcagcggatgccgcgctgccgctacggcttcttccacgtggtgaacaacgac 535
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 16 gggctggtgcagcggatgccgcgctgccgccatggcttcttccacgtggtgaacaacgac 75
Query: 536 tacacgcactggatcatgtacgccatcggcggcaacatgaaccccaccatcatcagccag 595
|||||||||||| ||||||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 76 tacacgcactggctcatgtacgccatcggcggcagccagaaccctaccatcatcagccag 135
Query: 596 ggcaaccgcttcatcgcccccgacgaccccaacgccaaggaggtgaccaagcgggagtac 655
|| ||||| ||| |||| ||||||| | |||||||||||||||| ||||||||
Sbjct: 136 gggaaccggttccgcgccgtcgacgacgggaggttcaaggaggtgaccaagagggagtac 195
Query: 656 acgccgtacaaggactacaaggagtgggtgtggaagtcgcagggcgacgtcatgatgaat 715
|||||||||| || |||||||| ||||||||||||||||||| |||| | | | |||
Sbjct: 196 acgccgtacagcgagtacaaggactgggtgtggaagtcgcaggacgacctgttcctcaat 255
Query: 716 ggcgccttcttcaacgagtccggcggccagaacgagcgcaagtacgacaggttcgacttc 775
|| |||||||||||| ||||||||||| ||||||||||| || ||||||| ||||| ||
Sbjct: 256 ggggccttcttcaaccagtccggcggcgagaacgagcgccggttcgacaggctcgacctc 315
Query: 776 atcccggccaag 787
|||| |||||||
Sbjct: 316 atccaggccaag 327
>gb|BG241283.1|BG241283 OV1_40_D10.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 526
Score = 256 bits (129), Expect = 4e-066
Identities = 153/161 (95%)
Strand = Plus / Plus
Query: 625 caacgccaaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggagtgggt 684
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 366 caacgccaaggaggtgaccaagagggagtacacggcgtacaaggactacaaggagtgggt 425
Query: 685 gtggaagtcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggcggcca 744
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 426 gtggaagtcgcagggagacgtcatgatgaacggcgccttcttcaacgagtccggcgggca 485
Query: 745 gaacgagcgcaagtacgacaggttcgacttcatcccggcca 785
||||||||||||||||||| | ||||||||||||||||||
Sbjct: 486 gaacgagcgcaagtacgacgagctcgacttcatcccggcca 526
>gb|BG241293.1|BG241293 OV1_40_E09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 526
Score = 256 bits (129), Expect = 4e-066
Identities = 153/161 (95%)
Strand = Plus / Plus
Query: 625 caacgccaaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggagtgggt 684
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 366 caacgccaaggaggtgaccaagagggagtacacggcgtacaaggactacaaggagtgggt 425
Query: 685 gtggaagtcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggcggcca 744
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 426 gtggaagtcgcagggagacgtcatgatgaacggcgccttcttcaacgagtccggcgggca 485
Query: 745 gaacgagcgcaagtacgacaggttcgacttcatcccggcca 785
||||||||||||||||||| | ||||||||||||||||||
Sbjct: 486 gaacgagcgcaagtacgacgagctcgacttcatcccggcca 526
>gb|CW266971.1|CW266971 104_737_11400437_148_35293_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11400437, DNA
sequence
Length = 670
Score = 194 bits (98), Expect = 1e-047
Identities = 245/294 (83%)
Strand = Plus / Minus
Query: 344 gggtcgacggccatcaccgtgtccaacagccacttcaccgaccacgaccacgtgatgctg 403
|||||||||||||||||||||||||||||| ||||| | |||||||| | |||||||||
Sbjct: 294 gggtcgacggccatcaccgtgtccaacagctacttcgcgcaccacgacgaggtgatgctg 235
Query: 404 ttcggcgccagcaacgacagcccgcaggacgcggtgatgcaggtcacggtggcgttcaac 463
| ||||||||| ||| || || |||| | | |||||||||||| | |||||||||
Sbjct: 234 ctgggcgccagcgacgcgtacctgccggactccgggatgcaggtcaccatcgcgttcaac 175
Query: 464 cacttcggccgcgggctggtgcagcggatgccgcgctgccgctacggcttcttccacgtg 523
| ||||||| |||||||||||||||||||||||| ||||| || | ||||||| |
Sbjct: 174 cggttcggccccgggctggtgcagcggatgccgcgatgccggcgagggtacttccacatc 115
Query: 524 gtgaacaacgactacacgcactggatcatgtacgccatcggcggcaacatgaaccccacc 583
|| ||||||||||||||| ||| ||||||||||||||||||| | |||||||||
Sbjct: 114 gtcaacaacgactacacgtcgtgggagatgtacgccatcggcggcagcgcaaaccccacc 55
Query: 584 atcatcagccagggcaaccgcttcatcgcccccgacgaccccaacgccaaggag 637
|||| ||||||||||||||||| |||||| |||| |||||| ||||||||||||
Sbjct: 54 atcaacagccagggcaaccgctacatcgcgcccggcgacccaaacgccaaggag 1
Score = 54.0 bits (27), Expect = 3e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 57 aggagctgatcgtgaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatc 115
|||||||| | |||||| | ||||||| ||||||||||||||||||| |||||||||
Sbjct: 587 aggagctgctggtgaacagctacaagaccatcgacgggcggggcgcgcgcgtgcacatc 529
>gb|CW401009.1|CW401009 fsbb001f091j18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f091j18, DNA
sequence
Length = 684
Score = 145 bits (73), Expect = 1e-032
Identities = 148/173 (85%)
Strand = Plus / Minus
Query: 440 atgcaggtcacggtggcgttcaaccacttcggccgcgggctggtgcagcggatgccgcgc 499
|||||| |||| || || ||||||||||||||| | || || |||||| |||||||| |
Sbjct: 610 atgcagatcaccgtcgccttcaaccacttcggcagaggcctcgtgcagaggatgccgagg 551
Query: 500 tgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgcc 559
||||||| || ||||||||||| || ||||||||||||||||||||| |||||||||||
Sbjct: 550 tgccgctgggggttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgcc 491
Query: 560 atcggcggcaacatgaaccccaccatcatcagccagggcaaccgcttcatcgc 612
|||||||||| || | || ||||||||||||||||| ||||||| ||||||
Sbjct: 490 atcggcggcagcaaggcgccgaccatcatcagccaggggaaccgctacatcgc 438
>gb|CW333051.1|CW333051 104_830_11481737_148_36039_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481737, DNA
sequence
Length = 629
Score = 133 bits (67), Expect = 4e-029
Identities = 152/179 (84%), Gaps = 2/179 (1%)
Strand = Plus / Plus
Query: 4 ggaccggccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggcagg-agc 62
|||||| |||||||||||| |||||||||||||||||||||| | || | ||||| |||
Sbjct: 190 ggaccgcccgctgtggatcacgttcgcgcgcgacatggtgatcaacct-ctgcagggagc 248
Query: 63 tgatcgtgaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatcatgttcg 122
|| | |||| | | ||||||| ||||||||||| ||||||||||||||| || || ||
Sbjct: 249 tgctggtgaccagcgacaagaccatcgacgggcgcggcgcgcaggtgcacgtcgtgggcg 308
Query: 123 cgcagatcacgctgcagaacgtgcagaacgnnnncctgcacaacctgcacatccacgac 181
|||||||||||||||||||||||| ||||| ||| |||||||| ||||||||||||
Sbjct: 309 cgcagatcacgctgcagaacgtgcggaacgtgatcctccacaacctccacatccacgac 367
Score = 127 bits (64), Expect = 2e-027
Identities = 145/172 (84%)
Strand = Plus / Plus
Query: 244 gagcgacggcgacggcgtctccgtgctgtcgtccagcaacgtgtggatcgaccacgtgtc 303
||||||||||||||| ||||||||| || ||||||| || | |||||||||||||||||
Sbjct: 430 gagcgacggcgacggggtctccgtgatggggtccagcgacatctggatcgaccacgtgtc 489
Query: 304 catgtccagctgctccgacgggctgatcgacgtggtgaacgggtcgacggccatcaccgt 363
||| |||||| ||||||||||| | ||||||||| |||| || || ||| | ||| |
Sbjct: 490 gatgcggagctgcgccgacgggctggtggacgtggtggacggctccaccgccgtgaccat 549
Query: 364 gtccaacagccacttcaccgaccacgaccacgtgatgctgttcggcgccagc 415
|||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 550 ctccaacggccacttcaccaggcacgaccacgtgatgctgttcggtgccagc 601
>gb|CW060595.1|CW060595 104_304_10519937_115_30144 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519937, DNA
sequence
Length = 550
Score = 123 bits (62), Expect = 4e-026
Identities = 164/198 (82%)
Strand = Plus / Minus
Query: 344 gggtcgacggccatcaccgtgtccaacagccacttcaccgaccacgaccacgtgatgctg 403
|||||||||||||||||||||||||||||| ||||| | |||||||| | |||||||||
Sbjct: 211 gggtcgacggccatcaccgtgtccaacagctacttcgcgcaccacgacgaggtgatgctg 152
Query: 404 ttcggcgccagcaacgacagcccgcaggacgcggtgatgcaggtcacggtggcgttcaac 463
| ||||||||| ||| || || |||| | | |||||||||||| | |||||||||
Sbjct: 151 ctgggcgccagcgacgcgtacctgccggactccgggatgcaggtcaccatcgcgttcaac 92
Query: 464 cacttcggccgcgggctggtgcagcggatgccgcgctgccgctacggcttcttccacgtg 523
| ||||||| |||||||||||||||||||||||| ||||| || | ||||||| |
Sbjct: 91 cggttcggccccgggctggtgcagcggatgccgcgatgccggcgagggtacttccacatc 32
Query: 524 gtgaacaacgactacacg 541
|| |||||||||||||||
Sbjct: 31 gtcaacaacgactacacg 14
Score = 54.0 bits (27), Expect = 3e-005
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 57 aggagctgatcgtgaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatc 115
|||||||| | |||||| | ||||||| ||||||||||||||||||| |||||||||
Sbjct: 504 aggagctgctggtgaacagctacaagaccatcgacgggcggggcgcgcgcgtgcacatc 446
>gb|CW160114.1|CW160114 104_566_11149711_148_36427_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149711, DNA
sequence
Length = 706
Score = 111 bits (56), Expect = 1e-022
Identities = 116/136 (85%)
Strand = Plus / Minus
Query: 280 caacgtgtggatcgaccacgtgtccatgtccagctgctccgacgggctgatcgacgtggt 339
||||||||||||||||||| | |||||||||| |||| |||||||| |||||||||||
Sbjct: 162 caacgtgtggatcgaccacatctccatgtccaactgcgaggacgggctcatcgacgtggt 103
Query: 340 gaacgggtcgacggccatcaccgtgtccaacagccacttcaccgaccacgaccacgtgat 399
| | | || |||| |||||| | |||||| ||||||||||| ||||| || |||||||
Sbjct: 102 gcagagctccacggggatcaccatctccaactgccacttcaccaaccacaacgacgtgat 43
Query: 400 gctgttcggcgccagc 415
||||||||||||||||
Sbjct: 42 gctgttcggcgccagc 27
Score = 60.0 bits (30), Expect = 5e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 78 acaagacgatcgacgggcggggcgcgcaggtgcacatc 115
||||||| ||||||||||| ||||||||||||||||||
Sbjct: 367 acaagaccatcgacgggcgcggcgcgcaggtgcacatc 330
>gb|BZ350471.1|BZ350471 ht56g09.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ht56g09 5', DNA sequence
Length = 596
Score = 75.8 bits (38), Expect = 8e-012
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 539 acgcactggatcatgtacgccatcggcggcaacatgaaccccaccatcatcagccagggc 598
||||||||| ||||||||||||||||||||| || | || |||||||||||||||||
Sbjct: 596 acgcactggctcatgtacgccatcggcggcagcaaggcgccgaccatcatcagccagggg 537
Query: 599 aaccgcttcatcgc 612
||||||| ||||||
Sbjct: 536 aaccgctacatcgc 523
>gb|CW160113.1|CW160113 104_566_11149711_116_36428_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149711, DNA
sequence
Length = 709
Score = 65.9 bits (33), Expect = 8e-009
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 280 caacgtgtggatcgaccacgtgtccatgtccagctgctccgacgggctgatcgacgtggt 339
||||||||||||||||||| | |||||||||| |||| |||||||| |||||||||||
Sbjct: 609 caacgtgtggatcgaccacatctccatgtccaactgcgaggacgggctcatcgacgtggt 668
Query: 340 g 340
|
Sbjct: 669 g 669
Score = 60.0 bits (30), Expect = 5e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 78 acaagacgatcgacgggcggggcgcgcaggtgcacatc 115
||||||| ||||||||||| ||||||||||||||||||
Sbjct: 404 acaagaccatcgacgggcgcggcgcgcaggtgcacatc 441
>gb|CW230316.1|CW230316 104_679_11210473_148_37335_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11210473, DNA
sequence
Length = 670
Score = 60.0 bits (30), Expect = 5e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 78 acaagacgatcgacgggcggggcgcgcaggtgcacatc 115
||||||| ||||||||||| ||||||||||||||||||
Sbjct: 183 acaagaccatcgacgggcgcggcgcgcaggtgcacatc 146
>gb|CW060594.1|CW060594 104_304_10519937_114_30143 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519937, DNA
sequence
Length = 670
Score = 54.0 bits (27), Expect = 3e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 57 aggagctgatcgtgaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatc 115
|||||||| | |||||| | ||||||| ||||||||||||||||||| |||||||||
Sbjct: 356 aggagctgctggtgaacagctacaagaccatcgacgggcggggcgcgcgcgtgcacatc 414
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 344 gggtcgacggccatcaccgtgt 365
||||||||||||||||||||||
Sbjct: 649 gggtcgacggccatcaccgtgt 670
>gb|CL189041.1|CL189041 104_406_10902014_114_32468_063 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902014, DNA
sequence
Length = 660
Score = 50.1 bits (25), Expect = 5e-004
Identities = 79/97 (81%)
Strand = Plus / Minus
Query: 509 ggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggc 568
|||| |||||| || |||||||| |||||||| |||||| ||||||||||| |||||
Sbjct: 411 ggctacttccatgttgtgaacaatgactacacccactgggaaatgtacgccattggcggg 352
Query: 569 aacatgaaccccaccatcatcagccagggcaaccgct 605
| | | || ||||||| |||||||||||||||||
Sbjct: 351 agcgctgagcctaccatcaacagccagggcaaccgct 315
>gb|CW022866.1|CW022866 104_162_10432101_5_30000 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10432101, DNA
sequence
Length = 617
Score = 50.1 bits (25), Expect = 5e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 78 acaagacgatcgacgggcggggcgcgcaggtgc 110
||||||| |||||||| ||||||||||||||||
Sbjct: 51 acaagaccatcgacggccggggcgcgcaggtgc 19
>gb|BG560336.1|BG560336 RHIZ2_73_B09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 557
Score = 50.1 bits (25), Expect = 5e-004
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 509 ggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggc 568
|||| |||||| || |||||||| |||||||| |||||| ||||||||||| |||||
Sbjct: 109 ggctacttccatgttgtgaacaatgactacacccactgggaaatgtacgccattggcggg 168
Query: 569 aacatgaaccccaccatcatcagccagggcaaccgct 605
| | | || ||||||| |||||||||||||||||
Sbjct: 169 agcgctgagcctaccatcaacagccagggcaaccgct 205
>gb|CL189042.1|CL189042 104_406_10902014_116_32472_063 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902014, DNA
sequence
Length = 717
Score = 46.1 bits (23), Expect = 0.007
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 509 ggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcgg 567
|||| |||||| || |||||||| |||||||| |||||| ||||||||||| |||||
Sbjct: 600 ggctacttccatgttgtgaacaatgactacacccactgggaaatgtacgccattggcgg 658
>gb|CW100366.1|CW100366 104_467_11004060_116_34389_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004060, DNA
sequence
Length = 530
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 10 gccgctgtggatcgtgttcgcgcgcgacatg 40
||||||||||||| ||||||||||||||||
Sbjct: 465 gccgctgtggatcacgttcgcgcgcgacatg 435
>gb|CW253678.1|CW253678 104_717_11225229_148_35108_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225229, DNA
sequence
Length = 617
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 10 gccgctgtggatcgtgttcgcgcgcgacatg 40
||||||||||||| ||||||||||||||||
Sbjct: 283 gccgctgtggatcacgttcgcgcgcgacatg 313
>gb|CW380541.1|CW380541 fsbb001f061g11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f061g11, DNA
sequence
Length = 507
Score = 46.1 bits (23), Expect = 0.007
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 350 acggccatcaccgtgtccaacagccacttcaccgaccac 388
|||||||| ||||||||||||| | |||||||| |||||
Sbjct: 240 acggccattaccgtgtccaacaactacttcacccaccac 202
>gb|AC169370.3| Sorghum bicolor clone SB_BBc0011I20, WORKING DRAFT SEQUENCE, 9
unordered pieces
Length = 143922
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 10 gccgctgtggatcgtgttcgcgcgcgacatg 40
||||||||||||| ||||||||||||||||
Sbjct: 48346 gccgctgtggatcacgttcgcgcgcgacatg 48316
>gb|CW222795.1|CW222795 104_658_11202566_116_37184_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202566, DNA
sequence
Length = 680
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 627 acgccaaggaggtgaccaagc 647
|||||||||||||||||||||
Sbjct: 53 acgccaaggaggtgaccaagc 73
>gb|CW247959.1|CW247959 104_709_11222039_116_35029_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222039, DNA
sequence
Length = 589
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 627 acgccaaggaggtgaccaagc 647
|||||||||||||||||||||
Sbjct: 437 acgccaaggaggtgaccaagc 457
>gb|CW247960.1|CW247960 104_709_11222039_148_35025_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222039, DNA
sequence
Length = 607
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 627 acgccaaggaggtgaccaagc 647
|||||||||||||||||||||
Sbjct: 477 acgccaaggaggtgaccaagc 457
>gb|BZ340159.1|BZ340159 ic37b05.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic37b05 5', DNA sequence
Length = 725
Score = 40.1 bits (20), Expect = 0.44
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1071 gaaaatttagggactgtttggttt 1094
||||| ||||||||||||||||||
Sbjct: 122 gaaaacttagggactgtttggttt 99
>gb|CL165956.1|CL165956 104_361_10809026_116_31821_242 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10809026, DNA
sequence
Length = 579
Score = 40.1 bits (20), Expect = 0.44
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 920 ggcatatatgtacgtgtgtgtaat 943
||||||||||||||||||| ||||
Sbjct: 149 ggcatatatgtacgtgtgtttaat 126
>gb|CL193687.1|CL193687 104_417_10941110_114_32276_055 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10941110, DNA
sequence
Length = 604
Score = 40.1 bits (20), Expect = 0.44
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 920 ggcatatatgtacgtgtgtgtaat 943
||||||||||||||||||| ||||
Sbjct: 244 ggcatatatgtacgtgtgtttaat 267
>gb|CW034875.1|CW034875 104_265_10502822_114_30378 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502822, DNA
sequence
Length = 632
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 239 acgcggagcgacggcgacgg 258
||||||||||||||||||||
Sbjct: 175 acgcggagcgacggcgacgg 156
>gb|CW155144.1|CW155144 104_557_11145978_116_36362_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11145978, DNA
sequence
Length = 694
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 685 gtggaagtcgcagggcgacg 704
||||||||||||||||||||
Sbjct: 684 gtggaagtcgcagggcgacg 665
>gb|CW213095.1|CW213095 104_644_11191367_148_37027_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11191367, DNA
sequence
Length = 613
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 244 gagcgacggcgacggcgtct 263
||||||||||||||||||||
Sbjct: 408 gagcgacggcgacggcgtct 427
>gb|CW220424.1|CW220424 104_655_11197342_116_37455_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197342, DNA
sequence
Length = 560
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 685 gtggaagtcgcagggcgacg 704
||||||||||||||||||||
Sbjct: 409 gtggaagtcgcagggcgacg 390
>gb|CW220425.1|CW220425 104_655_11197342_148_37454_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197342, DNA
sequence
Length = 583
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 685 gtggaagtcgcagggcgacg 704
||||||||||||||||||||
Sbjct: 414 gtggaagtcgcagggcgacg 433
>gb|CW303421.1|CW303421 104_787_11465229_116_35676_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465229, DNA
sequence
Length = 590
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 244 gagcgacggcgacggcgtct 263
||||||||||||||||||||
Sbjct: 373 gagcgacggcgacggcgtct 392
>gb|CW314773.1|CW314773 104_805_11472004_148_35820_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472004, DNA
sequence
Length = 669
Score = 40.1 bits (20), Expect = 0.44
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 920 ggcatatatgtacgtgtgtgtaat 943
||||||||||||||||||| ||||
Sbjct: 339 ggcatatatgtacgtgtgtttaat 362
>gb|CW352537.1|CW352537 fsbb001f014o01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f014o01, DNA
sequence
Length = 648
Score = 40.1 bits (20), Expect = 0.44
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 920 ggcatatatgtacgtgtgtgtaat 943
||||||||||||||||||| ||||
Sbjct: 91 ggcatatatgtacgtgtgtttaat 114
>gb|CW500662.1|CW500662 fsbb001f296b08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f296b08, DNA
sequence
Length = 780
Score = 40.1 bits (20), Expect = 0.44
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1071 gaaaatttagggactgtttggttt 1094
||||| ||||||||||||||||||
Sbjct: 394 gaaaacttagggactgtttggttt 371
>gb|CF434142.1|CF434142 NIT1_32_C06.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_32_C06_A002 5', mRNA sequence
Length = 656
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 685 gtggaagtcgcagggcgacg 704
||||||||||||||||||||
Sbjct: 255 gtggaagtcgcagggcgacg 274
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 304,447
Number of Sequences: 832831
Number of extensions: 304447
Number of successful extensions: 88989
Number of sequences better than 0.5: 41
Number of HSP's better than 0.5 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88854
Number of HSP's gapped (non-prelim): 126
length of query: 1155
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1135
effective length of database: 474,703,049
effective search space: 538787960615
effective search space used: 538787960615
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)