BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2440612.2.2
         (665 letters)

Database: Sorghum_nucl_with_EST.fasta 
           832,831 sequences; 491,359,669 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BE356001.1|BE356001  DG1_121_H09.b1_A002 Dark Grown 1 (DG...   355   3e-096
gb|BE360380.1|BE360380  DG1_63_G06.b1_A002 Dark Grown 1 (DG1...   355   3e-096
gb|BE360555.1|BE360555  DG1_64_D02.b1_A002 Dark Grown 1 (DG1...   355   3e-096
gb|BE360587.1|BE360587  DG1_64_D02.g1_A002 Dark Grown 1 (DG1...   355   3e-096
gb|CW199279.1|CW199279  104_624_11183428_116_36852_010 Sorgh...   305   3e-081
gb|BU672128.1|BU672128  pRC-1198 pRC Sorghum halepense cDNA ...   248   6e-064
gb|CX618902.1|CX618902  GABR1_42_H02.b1_A002 GA- or brassino...   105   5e-021
gb|CX618987.1|CX618987  GABR1_42_H02.g1_A002 GA- or brassino...   105   5e-021
gb|CW317085.1|CW317085  104_808_11473228_148_35858_004 Sorgh...    80   3e-013
gb|CW318572.1|CW318572  104_810_11474021_148_35867_017 Sorgh...    76   5e-012
gb|BG048866.1|BG048866  OV1_24_A12.b1_A002 Ovary 1 (OV1) Sor...    76   5e-012
gb|BG049151.1|BG049151  OV1_24_A12.g1_A002 Ovary 1 (OV1) Sor...    60   3e-007
gb|CW199280.1|CW199280  104_624_11183428_148_36851_010 Sorgh...    56   4e-006
gb|CW217517.1|CW217517  104_650_11195698_116_37136_035 Sorgh...    46   0.004
gb|CW498898.1|CW498898  fsbb001f293f22k0 Sorghum methylation...    46   0.004
gb|BG240594.1|BG240594  OV1_31_G10.b1_A002 Ovary 1 (OV1) Sor...    46   0.004
gb|CL195602.1|CL195602  104_421_10942490_116_32315_013 Sorgh...    44   0.016
gb|CW049538.1|CW049538  104_288_10514091_115_30199 Sorghum m...    44   0.016
gb|CW130522.1|CW130522  104_513_11115162_148_34779_079 Sorgh...    44   0.016
gb|CW192620.1|CW192620  104_615_11179127_148_36770_094 Sorgh...    44   0.016
gb|CW200888.1|CW200888  104_626_11184282_116_36872_071 Sorgh...    44   0.016
gb|CW297858.1|CW297858  104_780_11462265_148_35650_043 Sorgh...    44   0.016
gb|CW481006.1|CW481006  fsbb001f240f18k0 Sorghum methylation...    44   0.016
gb|CD221708.1|CD221708  CCC1_70_H01.g1_A007 Callus culture/c...    44   0.016
gb|AF320027.1|AF320027  Sorghum bicolor heme oxygenase 2 (HO...    44   0.016
gb|CL159350.1|CL159350  104_349_10804189_114_31381_013 Sorgh...    42   0.064
gb|CL174451.1|CL174451  104_378_10891629_148_31770_381 Sorgh...    42   0.064
gb|CL178364.1|CL178364  104_386_10894534_116_31912_214 Sorgh...    42   0.064
gb|CL186342.1|CL186342  104_401_10900146_114_32407_077 Sorgh...    42   0.064
gb|CL186343.1|CL186343  104_401_10900146_116_32411_077 Sorgh...    42   0.064
gb|CL196820.1|CL196820  104_423_10943318_114_32328_059 Sorgh...    42   0.064
gb|CW037026.1|CW037026  104_268_10504100_114_30381 Sorghum m...    42   0.064
gb|CW124289.1|CW124289  104_504_11111692_116_34708_016 Sorgh...    42   0.064
gb|CW146601.1|CW146601  104_539_11139079_148_34984_022 Sorgh...    42   0.064
gb|CW228468.1|CW228468  104_668_11206385_148_37248_073 Sorgh...    42   0.064
gb|CW258262.1|CW258262  104_724_11227782_148_35167_029 Sorgh...    42   0.064
gb|CW301224.1|CW301224  104_785_11464088_148_36264_032 Sorgh...    42   0.064
gb|CW311712.1|CW311712  104_801_11470374_116_36280_025 Sorgh...    42   0.064
gb|CW336548.1|CW336548  104_835_11483651_148_36100_034 Sorgh...    42   0.064
gb|CW366002.1|CW366002  fsbb001f038m17k0 Sorghum methylation...    42   0.064
gb|CW430903.1|CW430903  fsbb001f144n09k0 Sorghum methylation...    42   0.064
gb|BE358643.1|BE358643  DG1_30_G12.g1_A002 Dark Grown 1 (DG1...    42   0.064
gb|CL187028.1|CL187028  104_402_10900602_116_32437_075 Sorgh...    40   0.25 
gb|CW065802.1|CW065802  104_312_10523345_114_30129 Sorghum m...    40   0.25 
gb|CW094292.1|CW094292  104_457_11000226_148_37475_067 Sorgh...    40   0.25 
gb|CW098726.1|CW098726  104_465_11003161_116_34374_009 Sorgh...    40   0.25 
gb|CW161458.1|CW161458  104_568_11150426_116_36436_009 Sorgh...    40   0.25 
gb|CW161459.1|CW161459  104_568_11150426_148_36435_009 Sorgh...    40   0.25 
gb|CW202871.1|CW202871  104_629_11185327_148_36910_028 Sorgh...    40   0.25 
gb|CW226420.1|CW226420  104_664_11204877_116_37219_089 Sorgh...    40   0.25 
gb|CW241540.1|CW241540  104_700_11218829_116_37545_019 Sorgh...    40   0.25 
gb|CW396674.1|CW396674  fsbb001f085d16f0 Sorghum methylation...    40   0.25 
gb|CW421811.1|CW421811  fsbb001f130m17k0 Sorghum methylation...    40   0.25 
gb|CW427283.1|CW427283  fsbb001f139d04k0 Sorghum methylation...    40   0.25 
gb|BF587285.1|BF587285  FM1_34_E10.b1_A003 Floral-Induced Me...    40   0.25 
gb|CF487258.1|CF487258  POL1_42_E08.g1_A002 Pollen Sorghum b...    40   0.25 
gb|CF758757.1|CF758757  DSAF1_36_C06.g1_A011 Drought-stresse...    40   0.25 
gb|CN149544.1|CN149544  WOUND1_63_A05.g1_A002 Wounded leaves...    40   0.25 
>gb|BE356001.1|BE356001 DG1_121_H09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
           sequence
          Length = 516

 Score =  355 bits (179), Expect = 3e-096
 Identities = 209/219 (95%)
 Strand = Plus / Minus

                                                                       
Query: 302 ctagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgcc 361
           |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 301 ctagcagatcttcttgcagaagcacttgcgcgtggcgccctcggccttgcactcgccgcc 242

                                                                       
Query: 362 ggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccctt 421
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 241 ggggaagttctcggtctggcacacgttggcgcagttggtgctgctcatgcacaggccttt 182

                                                                       
Query: 422 gaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagctc 481
           |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||
Sbjct: 181 gaaccggtggctctgcgacaggcagtgcctcgcctccgccaccggagtcgtccccagctc 122

                                                  
Query: 482 tgtggcgacgaggaggagcaggaggacgaggacgggagc 520
           ||||||||||||||||||||  |||||||||| ||||||
Sbjct: 121 tgtggcgacgaggaggagcacaaggacgaggaagggagc 83
>gb|BE360380.1|BE360380 DG1_63_G06.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
           sequence
          Length = 553

 Score =  355 bits (179), Expect = 3e-096
 Identities = 209/219 (95%)
 Strand = Plus / Minus

                                                                       
Query: 302 ctagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgcc 361
           |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 296 ctagcagatcttcttgcagaagcacttgcgcgtggcgccctcggccttgcactcgccgcc 237

                                                                       
Query: 362 ggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccctt 421
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 236 ggggaagttctcggtctggcacacgttggcgcagttggtgctgctcatgcacaggccttt 177

                                                                       
Query: 422 gaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagctc 481
           |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||
Sbjct: 176 gaaccggtggctctgcgacaggcagtgcctcgcctccgccaccggagtcgtccccagctc 117

                                                  
Query: 482 tgtggcgacgaggaggagcaggaggacgaggacgggagc 520
           ||||||||||||||||||||  |||||||||| ||||||
Sbjct: 116 tgtggcgacgaggaggagcacaaggacgaggaagggagc 78
>gb|BE360555.1|BE360555 DG1_64_D02.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
           sequence
          Length = 509

 Score =  355 bits (179), Expect = 3e-096
 Identities = 209/219 (95%)
 Strand = Plus / Minus

                                                                       
Query: 302 ctagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgcc 361
           |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 301 ctagcagatcttcttgcagaagcacttgcgcgtggcgccctcggccttgcactcgccgcc 242

                                                                       
Query: 362 ggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccctt 421
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 241 ggggaagttctcggtctggcacacgttggcgcagttggtgctgctcatgcacaggccttt 182

                                                                       
Query: 422 gaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagctc 481
           |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||
Sbjct: 181 gaaccggtggctctgcgacaggcagtgcctcgcctccgccaccggagtcgtccccagctc 122

                                                  
Query: 482 tgtggcgacgaggaggagcaggaggacgaggacgggagc 520
           ||||||||||||||||||||  |||||||||| ||||||
Sbjct: 121 tgtggcgacgaggaggagcacaaggacgaggaagggagc 83
>gb|BE360587.1|BE360587 DG1_64_D02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
           sequence
          Length = 356

 Score =  355 bits (179), Expect = 3e-096
 Identities = 209/219 (95%)
 Strand = Plus / Minus

                                                                       
Query: 302 ctagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgcc 361
           |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 301 ctagcagatcttcttgcagaagcacttgcgcgtggcgccctcggccttgcactcgccgcc 242

                                                                       
Query: 362 ggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccctt 421
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 241 ggggaagttctcggtctggcacacgttggcgcagttggtgctgctcatgcacaggccttt 182

                                                                       
Query: 422 gaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagctc 481
           |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||
Sbjct: 181 gaaccggtggctctgcgacaggcagtgcctcgcctccgccaccggagtcgtccccagctc 122

                                                  
Query: 482 tgtggcgacgaggaggagcaggaggacgaggacgggagc 520
           ||||||||||||||||||||  |||||||||| ||||||
Sbjct: 121 tgtggcgacgaggaggagcacaaggacgaggaagggagc 83
>gb|CW199279.1|CW199279 104_624_11183428_116_36852_010 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11183428, DNA
           sequence
          Length = 624

 Score =  305 bits (154), Expect = 3e-081
 Identities = 175/182 (96%)
 Strand = Plus / Minus

                                                                       
Query: 302 ctagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgcc 361
           |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 563 ctagcagatcttcttgcagaagcacttgcgcgtggcgccctcggccttgcactcgccgcc 504

                                                                       
Query: 362 ggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccctt 421
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 503 ggggaagttctcggtctggcacacgttggcgcagttggtgctgctcatgcacaggccttt 444

                                                                       
Query: 422 gaaccggtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagctc 481
           |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||
Sbjct: 443 gaaccggtggctctgcgacaggcagtgcctcgcctccgccaccggagtcgtccccagctc 384

             
Query: 482 tg 483
           ||
Sbjct: 383 tg 382

 Score = 56.0 bits (28), Expect = 4e-006
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 481 ctgtggcgacgaggaggagcaggaggacgaggacgggagc 520
           |||||||||||||||||||||  |||||||||| ||||||
Sbjct: 310 ctgtggcgacgaggaggagcacaaggacgaggaagggagc 271
>gb|BU672128.1|BU672128 pRC-1198 pRC Sorghum halepense cDNA 5', mRNA sequence
          Length = 423

 Score =  248 bits (125), Expect = 6e-064
 Identities = 137/141 (97%)
 Strand = Plus / Minus

                                                                       
Query: 302 ctagcatatcttcttgcagaagcacttgcgcgtggcgccctccgccttgcactcgccgcc 361
           |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 141 ctagcagatcttcttgcagaagcacttgcgcgtggcgccctcggccttgcactcgccgcc 82

                                                                       
Query: 362 ggggaagttctcggtctggcacacgttggcgcagttgttgctgctcatgcacaggccctt 421
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 81  ggggaagttctcggtctggcacacgttggcgcagttggtgctgctcatgcacaggccttt 22

                                
Query: 422 gaaccggtggctctgcgacag 442
           |||||||||||||||||||||
Sbjct: 21  gaaccggtggctctgcgacag 1
>gb|CX618902.1|CX618902 GABR1_42_H02.b1_A002 GA- or brassinolide-treated seedlings Sorghum
           bicolor cDNA clone GABR1_42_H02_A002 3', mRNA sequence
          Length = 667

 Score =  105 bits (53), Expect = 5e-021
 Identities = 80/89 (89%)
 Strand = Plus / Minus

                                                                       
Query: 428 gtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagctctgtggc 487
           ||||||||||||||||||||||||||| ||||||||| | |||||||||| ||||| |||
Sbjct: 213 gtggctctgcgacaggcagtgcctcgcttccgccaccctcgtcgtccccatctctgaggc 154

                                        
Query: 488 gacgaggaggagcaggaggacgaggacgg 516
           | |||| || ||||||| |||||||||||
Sbjct: 153 ggcgagcagcagcaggaagacgaggacgg 125
>gb|CX618987.1|CX618987 GABR1_42_H02.g1_A002 GA- or brassinolide-treated seedlings Sorghum
           bicolor cDNA clone GABR1_42_H02_A002 5', mRNA sequence
          Length = 562

 Score =  105 bits (53), Expect = 5e-021
 Identities = 80/89 (89%)
 Strand = Plus / Minus

                                                                       
Query: 428 gtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagctctgtggc 487
           ||||||||||||||||||||||||||| ||||||||| | |||||||||| ||||| |||
Sbjct: 195 gtggctctgcgacaggcagtgcctcgcttccgccaccctcgtcgtccccatctctgaggc 136

                                        
Query: 488 gacgaggaggagcaggaggacgaggacgg 516
           | |||| || ||||||| |||||||||||
Sbjct: 135 ggcgagcagcagcaggaagacgaggacgg 107
>gb|CW317085.1|CW317085 104_808_11473228_148_35858_004 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11473228, DNA
           sequence
          Length = 712

 Score = 79.8 bits (40), Expect = 3e-013
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                   
Query: 428 gtggctctgcgacaggcagtgcctcgcctccgccaccttggtcgtccccagctctg 483
           ||||||||||||||||||||||||||| ||||||||| | |||||||||| |||||
Sbjct: 193 gtggctctgcgacaggcagtgcctcgcttccgccaccctcgtcgtccccatctctg 138
>gb|CW318572.1|CW318572 104_810_11474021_148_35867_017 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11474021, DNA
           sequence
          Length = 704

 Score = 75.8 bits (38), Expect = 5e-012
 Identities = 116/142 (81%)
 Strand = Plus / Minus

                                                                       
Query: 317 gcagaagcacttgcgcgtggcgccctccgccttgcactcgccgccggggaagttctcggt 376
           ||||||||||||||||| || ||| |||  |||||||| |||||| | ||| ||||| ||
Sbjct: 369 gcagaagcacttgcgcgaggtgccgtccatcttgcacttgccgcctgtgaacttctccgt 310

                                                                       
Query: 377 ctggcacacgttggcgcagttgttgctgctcatgcacaggcccttgaaccggtggctctg 436
           || ||| |||||| |||||||| ||  ||| | ||||| |||  |||||  |||||| ||
Sbjct: 309 cttgcatacgttgtcgcagttggtgtggctgaagcacatgccactgaacgagtggctttg 250

                                 
Query: 437 cgacaggcagtgcctcgcctcc 458
           ||||||||||||| || |||||
Sbjct: 249 cgacaggcagtgcttctcctcc 228
>gb|BG048866.1|BG048866 OV1_24_A12.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
           sequence
          Length = 402

 Score = 75.8 bits (38), Expect = 5e-012
 Identities = 116/142 (81%)
 Strand = Plus / Minus

                                                                       
Query: 317 gcagaagcacttgcgcgtggcgccctccgccttgcactcgccgccggggaagttctcggt 376
           ||||||||||||||||| || ||| |||  |||||||| |||||| | ||| ||||| ||
Sbjct: 284 gcagaagcacttgcgcgaggtgccgtccatcttgcacttgccgcctgtgaacttctccgt 225

                                                                       
Query: 377 ctggcacacgttggcgcagttgttgctgctcatgcacaggcccttgaaccggtggctctg 436
           || ||| |||||| |||||||| ||  ||| | ||||| |||  |||||  |||||| ||
Sbjct: 224 cttgcatacgttgtcgcagttggtgtggctgaagcacatgccactgaacgagtggctttg 165

                                 
Query: 437 cgacaggcagtgcctcgcctcc 458
           ||||||||||||| || |||||
Sbjct: 164 cgacaggcagtgcttctcctcc 143
>gb|BG049151.1|BG049151 OV1_24_A12.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
           sequence
          Length = 560

 Score = 60.0 bits (30), Expect = 3e-007
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                       
Query: 317 gcagaagcacttgcgcgtggcgccctccgccttgcactcgccgccggggaagttctcggt 376
           ||||||||||||||||| || ||| |||  |||||||| |||||| | ||| ||||| ||
Sbjct: 118 gcagaagcacttgcgcgaggtgccgtccatcttgcacttgccgcctgtgaacttctccgt 59

                                 
Query: 377 ctggcacacgttggcgcagttg 398
           || ||| |||||| ||||||||
Sbjct: 58  cttgcatacgttgtcgcagttg 37
>gb|CW199280.1|CW199280 104_624_11183428_148_36851_010 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11183428, DNA
           sequence
          Length = 712

 Score = 56.0 bits (28), Expect = 4e-006
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 302 ctagcatatcttcttgcagaagcacttgcgcg 333
           |||||| |||||||||||||||||||||||||
Sbjct: 681 ctagcagatcttcttgcagaagcacttgcgcg 712
>gb|CW217517.1|CW217517 104_650_11195698_116_37136_035 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11195698, DNA
           sequence
          Length = 291

 Score = 46.1 bits (23), Expect = 0.004
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 493 ggaggagcaggaggacgaggacg 515
           |||||||||||||||||||||||
Sbjct: 14  ggaggagcaggaggacgaggacg 36
>gb|CW498898.1|CW498898 fsbb001f293f22k0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f293f22, DNA
           sequence
          Length = 689

 Score = 46.1 bits (23), Expect = 0.004
 Identities = 92/115 (80%)
 Strand = Plus / Plus

                                                                       
Query: 350 gcactcgccgccggggaagttctcggtctggcacacgttggcgcagttgttgctgctcat 409
           ||||| |||| ||||||||  |||||||  ||| |||||||||||||| |  | || || 
Sbjct: 438 gcacttgccgtcggggaagccctcggtcctgcagacgttggcgcagttttcccggcgcac 497

                                                                  
Query: 410 gcacaggcccttgaaccggtggctctgcgacaggcagtgcctcgcctccgccacc 464
           |||  ||||   ||||| ||||||||||||| ||||   ||||||||||||||||
Sbjct: 498 gcaggggccgcggaacctgtggctctgcgactggcacgtcctcgcctccgccacc 552
>gb|BG240594.1|BG240594 OV1_31_G10.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
           sequence
          Length = 510

 Score = 46.1 bits (23), Expect = 0.004
 Identities = 92/115 (80%)
 Strand = Plus / Minus

                                                                       
Query: 350 gcactcgccgccggggaagttctcggtctggcacacgttggcgcagttgttgctgctcat 409
           ||||| |||| ||||||||  |||||||  ||| |||||||||||||| |  | || || 
Sbjct: 217 gcacttgccgtcggggaagccctcggtcctgcagacgttggcgcagttttcccggcgcac 158

                                                                  
Query: 410 gcacaggcccttgaaccggtggctctgcgacaggcagtgcctcgcctccgccacc 464
           |||  ||||   ||||| ||||||||||||| ||||   ||||||||||||||||
Sbjct: 157 gcaggggccgcggaacctgtggctctgcgactggcacgtcctcgcctccgccacc 103
>gb|CL195602.1|CL195602 104_421_10942490_116_32315_013 Sorghum methylation-filtered library
           (LibID: 104) Sorghum bicolor genomic clone 10942490, DNA
           sequence
          Length = 429

 Score = 44.1 bits (22), Expect = 0.016
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 488 gacgaggaggagcaggaggacgagga 513
           |||||||||||| |||||||||||||
Sbjct: 126 gacgaggaggaggaggaggacgagga 101
>gb|CW049538.1|CW049538 104_288_10514091_115_30199 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 10514091, DNA
           sequence
          Length = 435

 Score = 44.1 bits (22), Expect = 0.016
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 488 gacgaggaggagcaggaggacgagga 513
           |||||||||||| |||||||||||||
Sbjct: 349 gacgaggaggaggaggaggacgagga 324
>gb|CW130522.1|CW130522 104_513_11115162_148_34779_079 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11115162, DNA
           sequence
          Length = 593

 Score = 44.1 bits (22), Expect = 0.016
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 488 gacgaggaggagcaggaggacgagga 513
           |||||||||||| |||||||||||||
Sbjct: 429 gacgaggaggaggaggaggacgagga 454
>gb|CW192620.1|CW192620 104_615_11179127_148_36770_094 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11179127, DNA
           sequence
          Length = 671

 Score = 44.1 bits (22), Expect = 0.016
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 488 gacgaggaggagcaggaggacgagga 513
           |||||||||||| |||||||||||||
Sbjct: 202 gacgaggaggaggaggaggacgagga 227
>gb|CW200888.1|CW200888 104_626_11184282_116_36872_071 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11184282, DNA
           sequence
          Length = 222

 Score = 44.1 bits (22), Expect = 0.016
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 488 gacgaggaggagcaggaggacgagga 513
           |||||||||||| |||||||||||||
Sbjct: 191 gacgaggaggaggaggaggacgagga 216
>gb|CW297858.1|CW297858 104_780_11462265_148_35650_043 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11462265, DNA
           sequence
          Length = 509

 Score = 44.1 bits (22), Expect = 0.016
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 491 gaggaggagcaggaggacgaggacgg 516
           ||||||||||||||||| ||||||||
Sbjct: 87  gaggaggagcaggaggaggaggacgg 62
>gb|CW481006.1|CW481006 fsbb001f240f18k0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f240f18, DNA
           sequence
          Length = 313

 Score = 44.1 bits (22), Expect = 0.016
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 488 gacgaggaggagcaggaggacgagga 513
           |||||||||||| |||||||||||||
Sbjct: 107 gacgaggaggaggaggaggacgagga 82
>gb|CD221708.1|CD221708 CCC1_70_H01.g1_A007 Callus culture/cell suspension Sorghum bicolor
           cDNA clone CCC1_70_H01_A007 5', mRNA sequence
          Length = 231

 Score = 44.1 bits (22), Expect = 0.016
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 488 gacgaggaggagcaggaggacgagga 513
           |||||||||||| |||||||||||||
Sbjct: 224 gacgaggaggaggaggaggacgagga 199
>gb|AF320027.1|AF320027 Sorghum bicolor heme oxygenase 2 (HO2) mRNA, partial cds; nuclear
           gene for chloroplast product
          Length = 1444

 Score = 44.1 bits (22), Expect = 0.016
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 491 gaggaggagcaggaggacgaggacgg 516
           ||||||||||||||||| ||||||||
Sbjct: 376 gaggaggagcaggaggaggaggacgg 401
>gb|CL159350.1|CL159350 104_349_10804189_114_31381_013 Sorghum methylation-filtered library
           (LibID: 104) Sorghum bicolor genomic clone 10804189, DNA
           sequence
          Length = 336

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 484 tggcgacgaggaggagcaggaggacgagg 512
           |||||||||||||||| ||||||| ||||
Sbjct: 22  tggcgacgaggaggaggaggaggaggagg 50
>gb|CL174451.1|CL174451 104_378_10891629_148_31770_381 Sorghum methylation-filtered library
           (LibID: 104) Sorghum bicolor genomic clone 10891629, DNA
           sequence
          Length = 594

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 484 tggcgacgaggaggagcaggaggacgagg 512
           |||||||||||||||| ||||||| ||||
Sbjct: 549 tggcgacgaggaggaggaggaggaggagg 521
>gb|CL178364.1|CL178364 104_386_10894534_116_31912_214 Sorghum methylation-filtered library
           (LibID: 104) Sorghum bicolor genomic clone 10894534, DNA
           sequence
          Length = 325

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 487 cgacgaggaggagcaggaggacgaggacg 515
           |||||| |||||| |||||||||||||||
Sbjct: 64  cgacgacgaggaggaggaggacgaggacg 92
>gb|CL186342.1|CL186342 104_401_10900146_114_32407_077 Sorghum methylation-filtered library
           (LibID: 104) Sorghum bicolor genomic clone 10900146, DNA
           sequence
          Length = 587

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 487 cgacgaggaggagcaggaggacgaggacg 515
           ||||||||||||| ||||||| |||||||
Sbjct: 390 cgacgaggaggaggaggaggaggaggacg 418
>gb|CL186343.1|CL186343 104_401_10900146_116_32411_077 Sorghum methylation-filtered library
           (LibID: 104) Sorghum bicolor genomic clone 10900146, DNA
           sequence
          Length = 614

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 487 cgacgaggaggagcaggaggacgaggacg 515
           ||||||| ||||| |||||||||||||||
Sbjct: 591 cgacgagaaggaggaggaggacgaggacg 563
>gb|CL196820.1|CL196820 104_423_10943318_114_32328_059 Sorghum methylation-filtered library
           (LibID: 104) Sorghum bicolor genomic clone 10943318, DNA
           sequence
          Length = 718

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 484 tggcgacgaggaggagcaggaggacgagg 512
           |||||||||||||||| ||||||| ||||
Sbjct: 398 tggcgacgaggaggaggaggaggaggagg 370
>gb|CW037026.1|CW037026 104_268_10504100_114_30381 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 10504100, DNA
           sequence
          Length = 590

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 487 cgacgaggaggagcaggaggacgaggacg 515
           ||||||||||||| |||||||||| ||||
Sbjct: 172 cgacgaggaggaggaggaggacgacgacg 144
>gb|CW124289.1|CW124289 104_504_11111692_116_34708_016 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11111692, DNA
           sequence
          Length = 350

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 489 acgaggaggagcaggaggacgagga 513
           ||||||||||| |||||||||||||
Sbjct: 275 acgaggaggaggaggaggacgagga 299
>gb|CW146601.1|CW146601 104_539_11139079_148_34984_022 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11139079, DNA
           sequence
          Length = 631

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 487 cgacgaggaggagcaggaggacgaggacg 515
           ||||||||||||| |||||||||| ||||
Sbjct: 487 cgacgaggaggaggaggaggacgacgacg 459
>gb|CW228468.1|CW228468 104_668_11206385_148_37248_073 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11206385, DNA
           sequence
          Length = 665

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 488 gacgaggaggagcaggaggacgagg 512
           ||||||||||||||||||| |||||
Sbjct: 502 gacgaggaggagcaggagggcgagg 478
>gb|CW258262.1|CW258262 104_724_11227782_148_35167_029 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11227782, DNA
           sequence
          Length = 651

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 487 cgacgaggaggagcaggaggacgaggacg 515
           |||||| |||||| |||||||||||||||
Sbjct: 409 cgacgacgaggaggaggaggacgaggacg 437
>gb|CW301224.1|CW301224 104_785_11464088_148_36264_032 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11464088, DNA
           sequence
          Length = 604

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 487 cgacgaggaggagcaggaggacgaggacg 515
           |||||| |||||| |||||||||||||||
Sbjct: 181 cgacgacgaggaggaggaggacgaggacg 153
>gb|CW311712.1|CW311712 104_801_11470374_116_36280_025 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11470374, DNA
           sequence
          Length = 713

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 484 tggcgacgaggaggagcaggaggacgagg 512
           |||||||||||||||| ||||||| ||||
Sbjct: 513 tggcgacgaggaggaggaggaggaggagg 485
>gb|CW336548.1|CW336548 104_835_11483651_148_36100_034 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11483651, DNA
           sequence
          Length = 675

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 484 tggcgacgaggaggagcaggaggacgagg 512
           |||||||||||||||| ||||||| ||||
Sbjct: 66  tggcgacgaggaggaggaggaggaggagg 38
>gb|CW366002.1|CW366002 fsbb001f038m17k0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f038m17, DNA
           sequence
          Length = 809

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 487 cgacgaggaggagcaggaggacgaggacg 515
           |||||| |||||| |||||||||||||||
Sbjct: 16  cgacgacgaggaggaggaggacgaggacg 44
>gb|CW430903.1|CW430903 fsbb001f144n09k0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f144n09, DNA
           sequence
          Length = 621

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 487 cgacgaggaggagcaggaggacgaggacg 515
           |||||| |||||| |||||||||||||||
Sbjct: 368 cgacgacgaggaggaggaggacgaggacg 340
>gb|BE358643.1|BE358643 DG1_30_G12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
           sequence
          Length = 667

 Score = 42.1 bits (21), Expect = 0.064
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 484 tggcgacgaggaggagcaggaggacgagg 512
           |||||||||||||||| ||||||| ||||
Sbjct: 212 tggcgacgaggaggaggaggaggaggagg 240
>gb|CL187028.1|CL187028 104_402_10900602_116_32437_075 Sorghum methylation-filtered library
           (LibID: 104) Sorghum bicolor genomic clone 10900602, DNA
           sequence
          Length = 634

 Score = 40.1 bits (20), Expect = 0.25
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 301 actagcatatcttcttgcagaagcacttgcgc 332
           ||||||||  |||||||||||| |||||||||
Sbjct: 205 actagcatggcttcttgcagaaacacttgcgc 236
>gb|CW065802.1|CW065802 104_312_10523345_114_30129 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 10523345, DNA
           sequence
          Length = 348

 Score = 40.1 bits (20), Expect = 0.25
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 488 gacgaggaggagcaggaggacgaggacg 515
           |||||||||||| ||||||| |||||||
Sbjct: 321 gacgaggaggaggaggaggaggaggacg 294
>gb|CW094292.1|CW094292 104_457_11000226_148_37475_067 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11000226, DNA
           sequence
          Length = 680

 Score = 40.1 bits (20), Expect = 0.25
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 491 gaggaggagcaggaggacgaggac 514
           ||||||||||||||||| ||||||
Sbjct: 645 gaggaggagcaggaggaggaggac 622
>gb|CW098726.1|CW098726 104_465_11003161_116_34374_009 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11003161, DNA
           sequence
          Length = 502

 Score = 40.1 bits (20), Expect = 0.25
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 488 gacgaggaggagcaggaggacgag 511
           |||||||||||| |||||||||||
Sbjct: 106 gacgaggaggaggaggaggacgag 129
>gb|CW161458.1|CW161458 104_568_11150426_116_36436_009 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11150426, DNA
           sequence
          Length = 717

 Score = 40.1 bits (20), Expect = 0.25
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 301 actagcatatcttcttgcagaagcacttgcgc 332
           ||||||||  |||||||||||| |||||||||
Sbjct: 583 actagcatggcttcttgcagaaacacttgcgc 552
>gb|CW161459.1|CW161459 104_568_11150426_148_36435_009 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11150426, DNA
           sequence
          Length = 714

 Score = 40.1 bits (20), Expect = 0.25
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 301 actagcatatcttcttgcagaagcacttgcgc 332
           ||||||||  |||||||||||| |||||||||
Sbjct: 640 actagcatggcttcttgcagaaacacttgcgc 671
>gb|CW202871.1|CW202871 104_629_11185327_148_36910_028 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11185327, DNA
           sequence
          Length = 524

 Score = 40.1 bits (20), Expect = 0.25
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 301 actagcatatcttcttgcagaagcacttgcgc 332
           ||||||||  |||||||||||| |||||||||
Sbjct: 284 actagcatggcttcttgcagaaacacttgcgc 253
>gb|CW226420.1|CW226420 104_664_11204877_116_37219_089 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11204877, DNA
           sequence
          Length = 629

 Score = 40.1 bits (20), Expect = 0.25
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 485 ggcgacgaggaggagcaggaggacgagg 512
           ||||||||||||||| ||||||| ||||
Sbjct: 420 ggcgacgaggaggaggaggaggaggagg 447
  Database: Sorghum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:54 PM
  Number of letters in database: 491,359,669
  Number of sequences in database:  832,831
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 197,568
Number of Sequences: 832831
Number of extensions: 197568
Number of successful extensions: 61058
Number of sequences better than  0.5: 58
Number of HSP's better than  0.5 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60932
Number of HSP's gapped (non-prelim): 121
length of query: 665
length of database: 491,359,669
effective HSP length: 19
effective length of query: 646
effective length of database: 475,535,880
effective search space: 307196178480
effective search space used: 307196178480
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)