BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440570.2.2
(905 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD220686.1|CD220686 CCC1_68_A01.g1_A007 Callus culture/c... 918 0.0
gb|CX607570.1|CX607570 ANR1_29_B04.g1_A002 Anaerobic roots ... 908 0.0
gb|CF480922.1|CF480922 POL1_68_H06.g1_A002 Pollen Sorghum b... 906 0.0
gb|AW923964.1|AW923964 WS1_31_E12.b1_A002 Water-stressed 1 ... 856 0.0
gb|CN152337.1|CN152337 WOUND1_81_A03.g1_A002 Wounded leaves... 852 0.0
gb|AW924501.1|AW924501 WS1_70_C08.b1_A002 Water-stressed 1 ... 817 0.0
gb|BG649617.1|BG649617 RHIZ2_81_D03.b1_A003 Rhizome2 (RHIZ2... 801 0.0
gb|AW922642.1|AW922642 DG1_46_G01.b1_A002 Dark Grown 1 (DG1... 799 0.0
gb|AW922809.1|AW922809 DG1_46_G01.g1_A002 Dark Grown 1 (DG1... 777 0.0
gb|CX607486.1|CX607486 ANR1_29_B04.b1_A002 Anaerobic roots ... 767 0.0
gb|BG605778.1|BG605778 RHIZ2_81_D03.g1_A003 Rhizome2 (RHIZ2... 739 0.0
gb|BF656888.1|BF656888 OV2_22_C06.g1_A002 Ovary 2 (OV2) Sor... 735 0.0
gb|BG158183.1|BG158183 EM1_10_F10.g1_A002 Embryo 1 (EM1) So... 731 0.0
gb|CF480856.1|CF480856 POL1_68_H06.b1_A002 Pollen Sorghum b... 716 0.0
gb|BF657231.1|BF657231 OV2_22_C06.b1_A002 Ovary 2 (OV2) Sor... 704 0.0
gb|BQ655955.1|BQ655955 pRC0147 Sorghum halepense rhizome cD... 688 0.0
gb|AW679772.1|AW679772 WS1_31_E12.g1_A002 Water-stressed 1 ... 672 0.0
gb|BG357653.1|BG357653 OV2_32_F03.g1_A002 Ovary 2 (OV2) Sor... 662 0.0
gb|BG463804.1|BG463804 EM1_51_B03.g1_A002 Embryo 1 (EM1) So... 656 0.0
gb|BG357973.1|BG357973 OV2_32_F03.b1_A002 Ovary 2 (OV2) Sor... 654 0.0
gb|CD220585.1|CD220585 CCC1_68_A01.b1_A007 Callus culture/c... 628 e-178
gb|BE593290.1|BE593290 WS1_100_A02.g1_A002 Water-stressed 1... 593 e-167
gb|BE353117.1|BE353117 DG1_4_F11.g1_A002 Dark Grown 1 (DG1)... 545 e-153
gb|BG464804.1|BG464804 EM1_34_D09.g1_A002 Embryo 1 (EM1) So... 525 e-147
gb|AW677303.1|AW677303 DG1_5_G07.g1_A002 Dark Grown 1 (DG1)... 511 e-143
gb|AW923118.1|AW923118 DG1_49_C10.b1_A002 Dark Grown 1 (DG1... 511 e-143
gb|BG464969.1|BG464969 EM1_34_D09.b1_A002 Embryo 1 (EM1) So... 478 e-133
gb|AW287531.2|AW287531 LG1_242_C03.b1_A002 Light Grown 1 (L... 474 e-132
gb|BG463717.1|BG463717 EM1_51_B03.b1_A002 Embryo 1 (EM1) So... 474 e-132
gb|BE593704.1|BE593704 WS1_100_A02.b1_A002 Water-stressed 1... 468 e-130
gb|AW677175.1|AW677175 DG1_5_G07.b1_A002 Dark Grown 1 (DG1)... 466 e-129
gb|BG048776.1|BG048776 OV1_22_H05.b1_A002 Ovary 1 (OV1) Sor... 466 e-129
gb|BE360510.1|BE360510 DG1_64_A12.b1_A002 Dark Grown 1 (DG1... 422 e-116
gb|CN127236.1|CN127236 RHOH1_21_G05.g3_A002 Acid- and alkal... 375 e-102
gb|CN130926.1|CN130926 RHOH1_44_F10.g1_A002 Acid- and alkal... 375 e-102
gb|CN130940.1|CN130940 RHOH1_44_H04.g1_A002 Acid- and alkal... 375 e-102
gb|CX607581.1|CX607581 ANR1_29_C03.g1_A002 Anaerobic roots ... 355 5e-096
gb|CN130857.1|CN130857 RHOH1_44_F10.b1_A002 Acid- and alkal... 351 7e-095
gb|CW043685.1|CW043685 104_279_10508516_114_30276 Sorghum m... 331 7e-089
gb|CN130870.1|CN130870 RHOH1_44_H04.b1_A002 Acid- and alkal... 252 5e-065
gb|BE358850.1|BE358850 DG1_32_E01.g1_A002 Dark Grown 1 (DG1... 246 3e-063
gb|CF485438.1|CF485438 POL1_31_B12.g1_A002 Pollen Sorghum b... 228 7e-058
gb|CF483535.1|CF483535 POL1_22_H11.g1_A002 Pollen Sorghum b... 226 3e-057
gb|CF759226.1|CF759226 DSAF1_42_E07.b1_A011 Drought-stresse... 214 1e-053
gb|CX607497.1|CX607497 ANR1_29_C03.b1_A002 Anaerobic roots ... 214 1e-053
gb|BG049071.1|BG049071 OV1_22_H05.g1_A002 Ovary 1 (OV1) Sor... 212 4e-053
gb|CF760222.1|CF760222 DSAF1_57_A03.b1_A011 Drought-stresse... 210 2e-052
gb|AW678085.1|AW678085 WS1_13_G12.b1_A002 Water-stressed 1 ... 196 2e-048
gb|AW678167.1|AW678167 WS1_13_G12.g1_A002 Water-stressed 1 ... 196 2e-048
gb|AW923130.1|AW923130 DG1_49_C10.g1_A002 Dark Grown 1 (DG1... 194 1e-047
gb|CF482087.1|CF482087 POL1_76_B09.g1_A002 Pollen Sorghum b... 188 6e-046
gb|AW924612.1|AW924612 WS1_70_C08.g1_A002 Water-stressed 1 ... 165 9e-039
gb|CF483457.1|CF483457 POL1_22_H11.b1_A002 Pollen Sorghum b... 131 1e-028
gb|CW251504.1|CW251504 104_714_11223967_148_35072_030 Sorgh... 127 2e-027
gb|CW420291.1|CW420291 fsbb001f126i19k0 Sorghum methylation... 127 2e-027
gb|CW091874.1|CW091874 104_454_10998818_114_33037_013 Sorgh... 125 8e-027
gb|CW241511.1|CW241511 104_700_11218812_148_37541_036 Sorgh... 125 8e-027
gb|CW251503.1|CW251503 104_714_11223967_116_35068_030 Sorgh... 125 8e-027
gb|CW420290.1|CW420290 fsbb001f126i19f0 Sorghum methylation... 125 8e-027
gb|BZ781233.1|BZ781233 ii25e08.g1 WGS-SbicolorF (DH5a methy... 98 2e-018
gb|CW170352.1|CW170352 104_580_11155162_116_36512_035 Sorgh... 86 7e-015
gb|BE363639.1|BE363639 WS1_64_H09.g1_A002 Water-stressed 1 ... 86 7e-015
gb|BM317742.1|BM317742 WS1_64_H09.b9_A002 Water-stressed 1 ... 86 7e-015
gb|CC059618.1|CC059618 ii25e08.b1 WGS-SbicolorF (DH5a methy... 78 2e-012
gb|CW170353.1|CW170353 104_580_11155162_148_36511_035 Sorgh... 76 6e-012
gb|CF758081.1|CF758081 DSAF1_27_A09.g1_A011 Drought-stresse... 52 9e-005
gb|CW224062.1|CW224062 104_660_11203250_116_37444_011 Sorgh... 42 0.088
gb|CW282295.1|CW282295 104_758_11408636_148_35472_076 Sorgh... 42 0.088
gb|CW317057.1|CW317057 104_808_11473213_148_35855_051 Sorgh... 42 0.088
gb|CW462958.1|CW462958 fsbb001f211f09f0 Sorghum methylation... 42 0.088
>gb|CD220686.1|CD220686 CCC1_68_A01.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_68_A01_A007 5', mRNA sequence
Length = 636
Score = 918 bits (463), Expect = 0.0
Identities = 594/636 (93%), Gaps = 9/636 (1%)
Strand = Plus / Plus
Query: 23 gagcaggaggcggacaaggtaagcagcaatcgcag---gaaccctagcgccgccgc---a 76
||||||||||||||||||||||||||| |||| |||||||||||||||||| |
Sbjct: 1 gagcaggaggcggacaaggtaagcagccgcagcagccagaaccctagcgccgccgccgca 60
Query: 77 cccgcaggaatgggtatcgacctcgtcgccggtgggaggaataagaagaccaagcgcact 136
|||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 61 tccgcagccatgggtatcgacctcgtcgccggtgggaggaacaagaggaccaagcgcacc 120
Query: 137 gcgcccaagtctgacgatgtctacctcaagctcctcgtcaagctctaccgtttcttggtc 196
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 121 gcgcccaagtccgacgatgtctacctcaagctcctcgtcaagctctaccgtttcctggtt 180
Query: 197 aggaggaccaagagcaatttcaacgctgtcattctcaagaggcttttcatgagtaaaacc 256
||||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 181 aggaggaccaagagcaacttcaacgctgtcatcctcaagaggctcttcatgagcaaaacc 240
Query: 257 aaccgaccaccaatctccatgcgccgccttgtcaagtttatggaaggaaagga---gaag 313
||||| |||||||| ||| | ||||||||||||||||| |||||||||||||| ||||
Sbjct: 241 aaccgcccaccaatttcccttcgccgccttgtcaagttcatggaaggaaaggaggagaag 300
Query: 314 aacattgctgtcattgttggcacagtcacagatgacaaaaggatccaggaggttccagca 373
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aacattgctgtgattgttggcacagtcacagatgacaaaaggatccaggaggttccagca 360
Query: 374 atgaaggttactgccctgaggttcacggagacagcaagggccaggattgtcaatgctggt 433
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 361 atgaaggttactgccctgaggttcaccgagacagcaagagccaggattgtcaatgctggt 420
Query: 434 ggcgagtgcctcacatttgaccagcttgctcttcgtgctccacttggcgagaacacggtc 493
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 421 ggggagtgcctcacatttgaccagcttgctctccgtgctccacttggcgagaacacggtc 480
Query: 494 ctcttgaggggccccaagaatgcccgtgaggcagtgaggcactttggcaaggctcctgga 553
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 481 ctcttgaggggccccaagaatgctcgtgaggcggtgaggcactttggcaaggctcctggc 540
Query: 554 gtgccgcacagccacaccaagccgtatgtgcgctccaagggaaggaagttcgagaaggct 613
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 541 gtgccgcacagccacaccaagccatatgtgcgctccaagggaaggaagttcgaaaaggct 600
Query: 614 cgtggcaggaggaacagccgtggattcaaggtttaa 649
||||||| ||||||||||||||||||||||||||||
Sbjct: 601 cgtggcangaggaacagccgtggattcaaggtttaa 636
>gb|CX607570.1|CX607570 ANR1_29_B04.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_29_B04_A002 5', mRNA sequence
Length = 710
Score = 908 bits (458), Expect = 0.0
Identities = 597/640 (93%), Gaps = 10/640 (1%)
Strand = Plus / Plus
Query: 21 ccgagcaggaggcggacaaggtaagcagcaatcgcag---gaaccctag---cgccgccg 74
|||||||||||||||||| |||||||||| |||| ||||||||| ||||||||
Sbjct: 2 ccgagcaggaggcggaca-ggtaagcagccgcagcagccggaaccctagcgccgccgccg 60
Query: 75 cacccgcaggaatgggtatcgacctcgtcgccggtgggaggaataagaagaccaagcgca 134
|| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 61 catccgcagccatgggtatcgacctcgtcgccggtgggaggaacaagaagaccaagcgca 120
Query: 135 ctgcgcccaagtctgacgatgtctacctcaagctcctcgtcaagctctaccgtttcttgg 194
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 121 ccgcgcccaagtccgacgatgtctacctcaagctcctcgtcaagctctaccgtttcctgg 180
Query: 195 tcaggaggaccaagagcaatttcaacgctgtcattctcaagaggcttttcatgagtaaaa 254
| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||| | ||
Sbjct: 181 ttaggaggaccaagagcaacttcaacgctgtcatcctcaagaggctcttcatgagcagaa 240
Query: 255 ccaaccgaccaccaatctccatgcgccgccttgtcaagtttatggaaggaa---aggaga 311
||||||| |||||||| ||| ||||||||||||||||||| |||||||||| ||||||
Sbjct: 241 ccaaccgcccaccaatttccctgcgccgccttgtcaagttcatggaaggaaaggaggaga 300
Query: 312 agaacattgctgtcattgttggcacagtcacagatgacaaaaggatccaggaggttccag 371
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agaacattgctgtgattgttggcacagtcacagatgacaaaaggatccaggaggttccag 360
Query: 372 caatgaaggttactgccctgaggttcacggagacagcaagggccaggattgtcaatgctg 431
| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 361 cgatgaaggttactgccctgaggttcaccgagacagcaagagccaggattgtcaatgctg 420
Query: 432 gtggcgagtgcctcacatttgaccagcttgctcttcgtgctccacttggcgagaacacgg 491
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 421 gtggggagtgcctcacatttgaccagcttgctctccgtgctccacttggcgagaacacgg 480
Query: 492 tcctcttgaggggccccaagaatgcccgtgaggcagtgaggcactttggcaaggctcctg 551
||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 481 tcctcttgaggggccccgagaatgctcgtgaggcggtgaggcactttggcaaggctcctg 540
Query: 552 gagtgccgcacagccacaccaagccgtatgtgcgctccaagggaaggaagttcgagaagg 611
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 541 gcgtgccgcacagccacaccaagccatatgtgcgctccaagggaaggaagttcgaaaagg 600
Query: 612 ctcgtggcaggaggaacagccgtggattcaaggtttaaaa 651
||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctcgtggcaggaggaacagccgtggattcaaggtttaaaa 640
Score = 71.9 bits (36), Expect = 1e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 667 cgtgttgccatcagcatagtgcaaccgttgtgtttgatcagtcgacag 714
|||| |||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 663 cgtgctgccatcagcatagtgcaaccgttctgtttgatcaatcgacag 710
>gb|CF480922.1|CF480922 POL1_68_H06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_68_H06_A002 5', mRNA sequence
Length = 758
Score = 906 bits (457), Expect = 0.0
Identities = 592/632 (93%), Gaps = 10/632 (1%)
Strand = Plus / Plus
Query: 30 aggcggacaaggtaagcagca--atc-gcaggaaccctagcgccgccgc---acccgcag 83
|||||||||||||||||||| ||| || ||||||||||||||||||| | ||||||
Sbjct: 1 aggcggacaaggtaagcagccgcatcagccggaaccctagcgccgccgccgcatccgcag 60
Query: 84 gaatgggtatcgacctcgtcgccggtgggaggaataagaagaccaagcgcactgcgccca 143
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 61 ccatgggtatcgacctcgtcgccggtgggaggaacaagaagaccaagcgcaccgcgccca 120
Query: 144 agtctgacgatgtctacctcaagctcctcgtcaagctctaccgtttcttggtcaggagga 203
|||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 121 agtccgacgatgtctacctcaagctcctcgtcaagctctaccgtttcctggttaggagga 180
Query: 204 ccaagagcaatttcaacgctgtcattctcaagaggcttttcatgagtaaaaccaaccgac 263
|||||||||| |||||||||||||| ||||||||||| |||||||| ||||||||||| |
Sbjct: 181 ccaagagcaacttcaacgctgtcatcctcaagaggctcttcatgagcaaaaccaaccgcc 240
Query: 264 caccaatctccatgcgccgccttgtcaagtttatggaaggaaaggag---aagaacattg 320
||||||| ||| ||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 241 caccaatttccctgcgccgccttgtcaagttcatggaaggaaaggaggagaagaacattg 300
Query: 321 ctgtcattgttggcacagtcacagatgacaaaaggatccaggaggttccagcaatgaagg 380
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctgtgattgttggcacagtcacagatgacaaaaggatccaggaggttccagcaatgaagg 360
Query: 381 ttactgccctgaggttcacggagacagcaagggccaggattgtcaatgctgg-tggcgag 439
||||||||||||||||||| | ||||||||| |||||||||||||||||||| ||| |||
Sbjct: 361 ttactgccctgaggttcaccgggacagcaagagccaggattgtcaatgctgggtggggag 420
Query: 440 tgcctcacatttgaccagcttgctcttcgtgctccacttggcgagaacacggtcctcttg 499
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 421 tgcctcacatttgaccagcttgctctccgtgctccacttggcgagaacacggtcctcttg 480
Query: 500 aggggccccaagaatgcccgtgaggcagtgaggcactttggcaaggctcctggagtgccg 559
||||||||||||||||| |||||||| |||||||||||||||| ||||||||| ||||||
Sbjct: 481 aggggccccaagaatgctcgtgaggcggtgaggcactttggcatggctcctggcgtgccg 540
Query: 560 cacagccacaccaagccgtatgtgcgctccaagggaaggaagttcgagaaggctcgtggc 619
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 541 cacagccacaccaagccatatgtgcgctccaagggaaggaagttcgaaaaggctcgtggc 600
Query: 620 aggaggaacagccgtggattcaaggtttaaaa 651
||||||||||||||||||||||||||||||||
Sbjct: 601 aggaggaacagccgtggattcaaggtttaaaa 632
Score = 167 bits (84), Expect = 2e-039
Identities = 99/104 (95%)
Strand = Plus / Plus
Query: 667 cgtgttgccatcagcatagtgcaaccgttgtgtttgatcagtcgacagtaattagtaatc 726
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 655 cgtgttgccatcagcatagtgcaaccgttctgtttgatcaatcgacagtaattagtaatc 714
Query: 727 actctgtaccgagattagtagcacaatttgttgtcctggtttga 770
||| | |||||||| |||||||||||||||||||||||||||||
Sbjct: 715 actttctaccgagagtagtagcacaatttgttgtcctggtttga 758
>gb|AW923964.1|AW923964 WS1_31_E12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 578
Score = 856 bits (432), Expect = 0.0
Identities = 509/534 (95%), Gaps = 3/534 (0%)
Strand = Plus / Plus
Query: 121 gaagaccaagcgcactgcgcccaagtctgacgatgtctacctcaagctcctcgtcaagct 180
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 9 gaagaccaagcgcaccgcgcccaagtccgacgatgtctacctcaagctcctcgtcaagct 68
Query: 181 ctaccgtttcttggtcaggaggaccaagagcaatttcaacgctgtcattctcaagaggct 240
|||||||||| |||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 69 ctaccgtttcctggttaggaggaccaagagcaacttcaacgctgtcatcctcaagaggct 128
Query: 241 tttcatgagtaaaaccaaccgaccaccaatctccatgcgccgccttgtcaagtttatgga 300
|||||||| ||||||||||| |||||||| ||| ||||||||||||||||||| |||||
Sbjct: 129 cttcatgagcaaaaccaaccgcccaccaatttccctgcgccgccttgtcaagttcatgga 188
Query: 301 aggaaagga---gaagaacattgctgtcattgttggcacagtcacagatgacaaaaggat 357
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 189 aggaaaggaggagaagaacattgctgtgattgttggcacagtcacagatgacaaaaggat 248
Query: 358 ccaggaggttccagcaatgaaggttactgccctgaggttcacggagacagcaagggccag 417
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 249 ccaggaggttccagcaatgaaggttactgccctgaggttcaccgagacagcaagagccag 308
Query: 418 gattgtcaatgctggtggcgagtgcctcacatttgaccagcttgctcttcgtgctccact 477
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 309 gattgtcaatgctggtggggagtgcctcacatttgaccagcttgctctccgtgctccact 368
Query: 478 tggcgagaacacggtcctcttgaggggccccaagaatgcccgtgaggcagtgaggcactt 537
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 369 tggcgagaacacggtcctcttgaggggccccaagaatgctcgtgaggcggtgaggcactt 428
Query: 538 tggcaaggctcctggagtgccgcacagccacaccaagccgtatgtgcgctccaagggaag 597
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 429 tggcaaggctcctggcgtgccgcacagccacaccaagccatatgtgcgctccaagggaag 488
Query: 598 gaagttcgagaaggctcgtggcaggaggaacagccgtggattcaaggtttaaaa 651
||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gaagttcgaaaaggctcgtggcaggaggaacagccgtggattcaaggtttaaaa 542
>gb|CN152337.1|CN152337 WOUND1_81_A03.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_81_A03_A002 5', mRNA sequence
Length = 819
Score = 852 bits (430), Expect = 0.0
Identities = 525/556 (94%), Gaps = 3/556 (0%)
Strand = Plus / Plus
Query: 68 gccgccgcacccgcaggaatgggtatcgacctcgtcgccggtgggaggaataagaagacc 127
||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 264 gccgccgcatccgcagccatgggtatcgacctcgtcgccggtgggaggaacaagaagacc 323
Query: 128 aagcgcactgcgcccaagtctgacgatgtctacctcaagctcctcgtcaagctctaccgt 187
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagcgcaccgcgcccaagtccgacgatgtctacctcaagctcctcgtcaagctctaccgt 383
Query: 188 ttcttggtcaggaggaccaagagcaatttcaacgctgtcattctcaagaggcttttcatg 247
||| |||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 384 ttcctggttaggaggaccaagagcaacttcaacgctgtcatcctcaagaggctcttcatg 443
Query: 248 agtaaaaccaaccgaccaccaatctccatgcgccgccttgtcaagtttatggaaggaaag 307
|| ||||||||||| |||||||| ||| ||||||||| ||||||||| ||||||||||||
Sbjct: 444 agcaaaaccaaccgcccaccaatttccctgcgccgccgtgtcaagttcatggaaggaaag 503
Query: 308 ga---gaagaacattgctgtcattgttggcacagtcacagatgacaaaaggatccaggag 364
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaggagaagaacattgctgtgattgttggcacagtcacagatgacaaaaggatccaggag 563
Query: 365 gttccagcaatgaaggttactgccctgaggttcacggagacagcaagggccaggattgtc 424
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 564 gttccagcaatgaaggttactgccctgaggttcaccgagacagcaagagccaggattgtc 623
Query: 425 aatgctggtggcgagtgcctcacatttgaccagcttgctcttcgtgctccacttggcgag 484
||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 624 aatgctggtggggagtgcctcacatttgaccagctagctctccgtgctccacttggcgag 683
Query: 485 aacacggtcctcttgaggggccccaagaatgcccgtgaggcagtgaggcactttggcaag 544
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 684 aacacggtcctcttgaggggccccaagaatgctcgtgaggcggtgaggcactttggcaag 743
Query: 545 gctcctggagtgccgcacagccacaccaagccgtatgtgcgctccaagggaaggaagttc 604
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 744 gctcctggcgtgccgcacagccacaccaagccatatgtgcgctccaagggaaggaagttc 803
Query: 605 gagaaggctcgtggca 620
|| |||||||||||||
Sbjct: 804 gaaaaggctcgtggca 819
>gb|AW924501.1|AW924501 WS1_70_C08.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 559
Score = 817 bits (412), Expect = 0.0
Identities = 498/526 (94%), Gaps = 3/526 (0%)
Strand = Plus / Plus
Query: 67 cgccgccgcacccgcaggaatgggtatcgacctcgtcgccggtgggaggaataagaagac 126
|||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 34 cgccgccgcatccgcagccatgggtatcgacctcgtcgccggtgggaggaacaagaagac 93
Query: 127 caagcgcactgcgcccaagtctgacgatgtctacctcaagctcctcgtcaagctctaccg 186
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 94 caagcgcaccgcgcccaagtccgacgatgtctacctcaagctcctcgtcaagctctaccg 153
Query: 187 tttcttggtcaggaggaccaagagcaatttcaacgctgtcattctcaagaggcttttcat 246
|||| |||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 154 tttcctggttaggaggaccaagagcaacttcaacgctgtcatcctcaagaggctcttcat 213
Query: 247 gagtaaaaccaaccgaccaccaatctccatgcgccgccttgtcaagtttatggaaggaaa 306
||| ||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||
Sbjct: 214 gagcaaaaccaaccgcccaccaatttccctgcgccgccttgtcaagttcatggaaggaaa 273
Query: 307 ggag---aagaacattgctgtcattgttggcacagtcacagatgacaaaaggatccagga 363
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ggaggagaagaacattgctgtgattgttggcacagtcacagatgacaaaaggatccagga 333
Query: 364 ggttccagcaatgaaggttactgccctgaggttcacggagacagcaagggccaggattgt 423
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 334 ggttccagcaatgaaggttactgccctgaggttcaccgagacagcaagagccaggattgt 393
Query: 424 caatgctggtggcgagtgcctcacatttgaccagcttgctcttcgtgctccacttggcga 483
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 394 caatgctggtggggagtgcctcacatttgaccagcttgctctccgtgctccacttggcga 453
Query: 484 gaacacggtcctcttgaggggccccaagaatgcccgtgaggcagtgaggcactttggcaa 543
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 454 gaacacggtcctcttgaggggccccaagaatgctcgtgaggcggtgaggcactttggcaa 513
Query: 544 ggctcctggagtgccgcacagccacaccaagccgtatgtgcgctcc 589
||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 514 ggctcctggcgtgccgcacagccacaccaagccatatgtgcgctcc 559
>gb|BG649617.1|BG649617 RHIZ2_81_D03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 566
Score = 801 bits (404), Expect = 0.0
Identities = 497/526 (94%), Gaps = 4/526 (0%)
Strand = Plus / Plus
Query: 67 cgccgccgcacccgcaggaatgggtatcgacctcgtcgccggtgggaggaataagaagac 126
|||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 41 cgccgccgcatccgcagccatgggtatcgacctcgtcgccggtgggaggaacaagaagac 100
Query: 127 caagcgcactgcgcccaagtctgacgatgtctacctcaagctcctcgtcaagctctaccg 186
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 101 caagcgcaccgcgcccaagtccgacgatgtctacctcaagctcctcgtcaagctctaccg 160
Query: 187 tttcttggtcaggaggaccaagagcaatttcaacgctgtcattctcaagaggcttttcat 246
|||| |||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 161 tttcctggttaggaggaccaagagcaacttcaacgctgtcatcctcaagaggctcttcat 220
Query: 247 gagtaaaaccaaccgaccaccaatctccatgcgccgccttgtcaagtttatggaaggaa- 305
||| ||||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||
Sbjct: 221 gagcaaaaccaaccgcccaccaatttccctgcgccgccttgtcaagttcatggaaggaaa 280
Query: 306 --aggagaagaacattgctgtcattgttggcacagtcacagatgacaaaaggatccagga 363
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ggaggagaagaacattgctgtgattgttggcacagtcacagatgacaaaaggatccagga 340
Query: 364 ggttccagcaatgaaggttactgccctgaggttcacggagacagcaagggccaggattgt 423
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 341 ggttccagcaatgaaggttactgccctgaggttcaccgagacagcaagagccaggattgt 400
Query: 424 caatgctg-gtggcgagtgcctcacatttgaccagcttgctcttcgtgctccacttggcg 482
|||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 401 caatgctgagtggggagtgcctcacatttgaccagcttgctctccgtgctccacttggcg 460
Query: 483 agaacacggtcctcttgaggggccccaagaatgcccgtgaggcagtgaggcactttggca 542
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 461 agaacacggtcctcttgaggggccccaagaatgctcgtgaggcggtgaggcactttggca 520
Query: 543 aggctcctggagtgccgcacagccacaccaagccgtatgtgcgctc 588
|||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 521 aggctcctggcgtgccgcacagccacaccaagccatatgtgcgctc 566
>gb|AW922642.1|AW922642 DG1_46_G01.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 563
Score = 799 bits (403), Expect = 0.0
Identities = 486/513 (94%), Gaps = 3/513 (0%)
Strand = Plus / Plus
Query: 67 cgccgccgcacccgcaggaatgggtatcgacctcgtcgccggtgggaggaataagaagac 126
|||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 47 cgccgccgcatccgcagccatgggtatcgacctcgtcgccggtgggaggaacaagaagac 106
Query: 127 caagcgcactgcgcccaagtctgacgatgtctacctcaagctcctcgtcaagctctaccg 186
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 107 caagcgcaccgcgcccaagtccgacgatgtctacctcaagctcctcgtcaagctctaccg 166
Query: 187 tttcttggtcaggaggaccaagagcaatttcaacgctgtcattctcaagaggcttttcat 246
|||| |||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 167 tttcctggttaggaggaccaagagcaacttcaacgctgtcatcctcaagaggctcttcat 226
Query: 247 gagtaaaaccaaccgaccaccaatctccatgcgccgccttgtcaagtttatggaaggaaa 306
||| ||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||
Sbjct: 227 gagcaaaaccaaccgcccaccaatttccctgcgccgccttgtcaagttcatggaaggaaa 286
Query: 307 gga---gaagaacattgctgtcattgttggcacagtcacagatgacaaaaggatccagga 363
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ggaggagaagaacattgctgtgattgttggcacagtcacagatgacaaaaggatccagga 346
Query: 364 ggttccagcaatgaaggttactgccctgaggttcacggagacagcaagggccaggattgt 423
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 347 ggttccagcaatgaaggttactgccctgaggttcaccgagacagcaagagccaggattgt 406
Query: 424 caatgctggtggcgagtgcctcacatttgaccagcttgctcttcgtgctccacttggcga 483
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 407 caatgctggtggggagtgcctcacatttgaccagcttgctctccgtgctccacttggcga 466
Query: 484 gaacacggtcctcttgaggggccccaagaatgcccgtgaggcagtgaggcactttggcaa 543
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 467 gaacacggtcctcttgaggggccccaagaatgctcgtgaggcggtgaggcactttggcaa 526
Query: 544 ggctcctggagtgccgcacagccacaccaagcc 576
||||||||| |||||||||||||||||||||||
Sbjct: 527 ggctcctggcgtgccgcacagccacaccaagcc 559
>gb|AW922809.1|AW922809 DG1_46_G01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 683
Score = 777 bits (392), Expect = 0.0
Identities = 463/486 (95%), Gaps = 3/486 (0%)
Strand = Plus / Plus
Query: 169 cctcgtcaagctctaccgtttcttggtcaggaggaccaagagcaatttcaacgctgtcat 228
|||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||
Sbjct: 1 cctcgtcaagctctaccgtttcctggttaggaggaccaagagcaacttcaacgctgtcat 60
Query: 229 tctcaagaggcttttcatgagtaaaaccaaccgaccaccaatctccatgcgccgccttgt 288
||||||||||| |||||||| ||||||||||| |||||||| ||| |||||||||||||
Sbjct: 61 cctcaagaggctcttcatgagcaaaaccaaccgcccaccaatttccctgcgccgccttgt 120
Query: 289 caagtttatggaaggaaagga---gaagaacattgctgtcattgttggcacagtcacaga 345
|||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 121 caagttcatggaaggaaaggaggagaagaacattgctgtgattgttggcacagtcacaga 180
Query: 346 tgacaaaaggatccaggaggttccagcaatgaaggttactgccctgaggttcacggagac 405
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 181 tgacaaaaggatccaggaggttccagcaatgaaggttactgccctgaggttcaccgagac 240
Query: 406 agcaagggccaggattgtcaatgctggtggcgagtgcctcacatttgaccagcttgctct 465
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 241 agcaagagccaggattgtcaatgctggtggggagtgcctcacatttgaccagcttgctct 300
Query: 466 tcgtgctccacttggcgagaacacggtcctcttgaggggccccaagaatgcccgtgaggc 525
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 301 ccgtgctccacttggcgagaacacggtcctcttgaggggccccaagaatgctcgtgaggc 360
Query: 526 agtgaggcactttggcaaggctcctggagtgccgcacagccacaccaagccgtatgtgcg 585
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 361 ggtgaggcactttggcaaggctcctggcgtgccgcacagccacaccaagccatatgtgcg 420
Query: 586 ctccaagggaaggaagttcgagaaggctcgtggcaggaggaacagccgtggattcaaggt 645
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctccaagggaaggaagttcgaaaaggctcgtggcaggaggaacagccgtggattcaaggt 480
Query: 646 ttaaaa 651
||||||
Sbjct: 481 ttaaaa 486
Score = 196 bits (99), Expect = 2e-048
Identities = 153/170 (90%), Gaps = 7/170 (4%)
Strand = Plus / Plus
Query: 667 cgtgttgccatcagcatagtgcaaccgttgtgtttgatcagtcgacagtaattagtaatc 726
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 509 cgtgttgccatcagcatagtgcaaccgttctgtttgatcaatcgacagtaattagtaatc 568
Query: 727 actctgtaccgagattagtagcacaatttgttgtcctggtttgaattttggaagatattt 786
||| | |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 569 actttctaccgagagtagtagcacaatttgttgtcctggtttgaattttgaaagatattt 628
Query: 787 ----gatgtcgtctccttattatctactcgttactggttgagcacgaaga 832
||| ||||| || ||||||||| ||||||||||||||| |||||
Sbjct: 629 gaaggatttcgtcgcc---ttatctactggttactggttgagcaagaaga 675
>gb|CX607486.1|CX607486 ANR1_29_B04.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_29_B04_A002 3', mRNA sequence
Length = 687
Score = 767 bits (387), Expect = 0.0
Identities = 458/481 (95%), Gaps = 3/481 (0%)
Strand = Plus / Plus
Query: 174 tcaagctctaccgtttcttggtcaggaggaccaagagcaatttcaacgctgtcattctca 233
||||||||||||||||| |||| ||||||||||||||||| |||||||||||||| ||||
Sbjct: 1 tcaagctctaccgtttcctggttaggaggaccaagagcaacttcaacgctgtcatcctca 60
Query: 234 agaggcttttcatgagtaaaaccaaccgaccaccaatctccatgcgccgccttgtcaagt 293
||||||| |||||||| ||||||||||| |||||||| ||| ||||||||||||||||||
Sbjct: 61 agaggctcttcatgagcaaaaccaaccgcccaccaatttccctgcgccgccttgtcaagt 120
Query: 294 ttatggaaggaaaggag---aagaacattgctgtcattgttggcacagtcacagatgaca 350
| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 121 tcatggaaggaaaggaggagaagaacattgctgtgattgttggcacagtcacagatgaca 180
Query: 351 aaaggatccaggaggttccagcaatgaaggttactgccctgaggttcacggagacagcaa 410
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 181 aaaggatccaggaggttccagcaatgaaggttactgccctgaggttcaccgagacagcaa 240
Query: 411 gggccaggattgtcaatgctggtggcgagtgcctcacatttgaccagcttgctcttcgtg 470
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 241 gagccaggattgtcaatgctggtggggagtgcctcacatttgaccagcttgctctccgtg 300
Query: 471 ctccacttggcgagaacacggtcctcttgaggggccccaagaatgcccgtgaggcagtga 530
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 301 ctccacttggcgagaacacggtcctcttgaggggccccaagaatgctcgtgaggcggtga 360
Query: 531 ggcactttggcaaggctcctggagtgccgcacagccacaccaagccgtatgtgcgctcca 590
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 361 ggcactttggcaaggctcctggcgtgccgcacagccacaccaagccatatgtgcgctcca 420
Query: 591 agggaaggaagttcgagaaggctcgtggcaggaggaacagccgtggattcaaggtttaaa 650
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agggaaggaagttcgaaaaggctcgtggcaggaggaacagccgtggattcaaggtttaaa 480
Query: 651 a 651
|
Sbjct: 481 a 481
Score = 188 bits (95), Expect = 6e-046
Identities = 152/170 (89%), Gaps = 7/170 (4%)
Strand = Plus / Plus
Query: 667 cgtgttgccatcagcatagtgcaaccgttgtgtttgatcagtcgacagtaattagtaatc 726
|||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 504 cgtgctgccatcagcatagtgcaaccgttctgtttgatcaatcgacagtaattagtaatc 563
Query: 727 actctgtaccgagattagtagcacaatttgttgtcctggtttgaattttggaagatattt 786
||| | |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 564 actttctaccgagagtagtagcacaatttgttgtcctggtttgaattttgaaagatattt 623
Query: 787 ----gatgtcgtctccttattatctactcgttactggttgagcacgaaga 832
||| ||||| || ||||||||| ||||||||||||||| |||||
Sbjct: 624 gaaggatttcgtcgcc---ttatctactggttactggttgagcaagaaga 670
>gb|BG605778.1|BG605778 RHIZ2_81_D03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 675
Score = 739 bits (373), Expect = 0.0
Identities = 441/463 (95%), Gaps = 3/463 (0%)
Strand = Plus / Plus
Query: 192 tggtcaggaggaccaagagcaatttcaacgctgtcattctcaagaggcttttcatgagta 251
|||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |
Sbjct: 4 tggttaggaggaccaagagcaacttcaacgctgtcatcctcaagaggctcttcatgagca 63
Query: 252 aaaccaaccgaccaccaatctccatgcgccgccttgtcaagtttatggaaggaaagga-- 309
|||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||||||
Sbjct: 64 aaaccaaccgcccaccaatttccctgcgccgccttgtcaagttcatggaaggaaaggagg 123
Query: 310 -gaagaacattgctgtcattgttggcacagtcacagatgacaaaaggatccaggaggttc 368
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 agaagaacattgctgtgattgttggcacagtcacagatgacaaaaggatccaggaggttc 183
Query: 369 cagcaatgaaggttactgccctgaggttcacggagacagcaagggccaggattgtcaatg 428
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 184 cagcaatgaaggttactgccctgaggttcaccgagacagcaagagccaggattgtcaatg 243
Query: 429 ctggtggcgagtgcctcacatttgaccagcttgctcttcgtgctccacttggcgagaaca 488
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 244 ctggtggggagtgcctcacatttgaccagcttgctctccgtgctccacttggcgagaaca 303
Query: 489 cggtcctcttgaggggccccaagaatgcccgtgaggcagtgaggcactttggcaaggctc 548
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 304 cggtcctcttgaggggccccaagaatgctcgtgaggcggtgaggcactttggcaaggctc 363
Query: 549 ctggagtgccgcacagccacaccaagccgtatgtgcgctccaagggaaggaagttcgaga 608
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 364 ctggcgtgccgcacagccacaccaagccatatgtgcgctccaagggaaggaagttcgaaa 423
Query: 609 aggctcgtggcaggaggaacagccgtggattcaaggtttaaaa 651
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aggctcgtggcaggaggaacagccgtggattcaaggtttaaaa 466
Score = 196 bits (99), Expect = 2e-048
Identities = 153/170 (90%), Gaps = 7/170 (4%)
Strand = Plus / Plus
Query: 667 cgtgttgccatcagcatagtgcaaccgttgtgtttgatcagtcgacagtaattagtaatc 726
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 489 cgtgttgccatcagcatagtgcaaccgttctgtttgatcaatcgacagtaattagtaatc 548
Query: 727 actctgtaccgagattagtagcacaatttgttgtcctggtttgaattttggaagatattt 786
||| | |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 549 actttctaccgagagtagtagcacaatttgttgtcctggtttgaattttgaaagatattt 608
Query: 787 ----gatgtcgtctccttattatctactcgttactggttgagcacgaaga 832
||| ||||| || ||||||||| ||||||||||||||| |||||
Sbjct: 609 gaaggatttcgtcgcc---ttatctactggttactggttgagcaagaaga 655
>gb|BF656888.1|BF656888 OV2_22_C06.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 567
Score = 735 bits (371), Expect = 0.0
Identities = 436/457 (95%), Gaps = 3/457 (0%)
Strand = Plus / Plus
Query: 198 ggaggaccaagagcaatttcaacgctgtcattctcaagaggcttttcatgagtaaaacca 257
|||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||
Sbjct: 1 ggaggaccaagagcaacttcaacgctgtcatcctcaagaggctcttcatgagcaaaacca 60
Query: 258 accgaccaccaatctccatgcgccgccttgtcaagtttatggaaggaaaggag---aaga 314
|||| |||||||| ||| ||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 61 accgcccaccaatttccctgcgccgccttgtcaagttcatggaaggaaaggaggagaaga 120
Query: 315 acattgctgtcattgttggcacagtcacagatgacaaaaggatccaggaggttccagcaa 374
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acattgctgtgattgttggcacagtcacagatgacaaaaggatccaggaggttccagcaa 180
Query: 375 tgaaggttactgccctgaggttcacggagacagcaagggccaggattgtcaatgctggtg 434
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 181 tgaaggttactgccctgaggttcaccgagacagcaagagccaggattgtcaatgctggtg 240
Query: 435 gcgagtgcctcacatttgaccagcttgctcttcgtgctccacttggcgagaacacggtcc 494
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 241 gggagtgcctcacatttgaccagcttgctctccgtgctccacttggcgagaacacggtcc 300
Query: 495 tcttgaggggccccaagaatgcccgtgaggcagtgaggcactttggcaaggctcctggag 554
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct: 301 tcttgaggggccccaagaatgctcgtgaggcggtgaggcactttggcaaggctcctggcg 360
Query: 555 tgccgcacagccacaccaagccgtatgtgcgctccaagggaaggaagttcgagaaggctc 614
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 361 tgccgcacagccacaccaagccatatgtgcgctccaagggaaggaagttcgaaaaggctc 420
Query: 615 gtggcaggaggaacagccgtggattcaaggtttaaaa 651
|||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtggcaggaggaacagccgtggattcaaggtttaaaa 457
Score = 119 bits (60), Expect = 5e-025
Identities = 82/88 (93%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 667 cgtgttgccatcagcatagtgcaaccgttgtgtttgatcagtcg-acagtaattagtaat 725
||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct: 480 cgtgttgccatcagcatagtgcaaccgttctgtttgatcaatcgaacagtaattagtaat 539
Query: 726 cactctgtaccgagattagtagcacaat 753
|||| | |||||||| ||||||||||||
Sbjct: 540 cactttctaccgagagtagtagcacaat 567
>gb|BG158183.1|BG158183 EM1_10_F10.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 667
Score = 731 bits (369), Expect = 0.0
Identities = 434/455 (95%), Gaps = 3/455 (0%)
Strand = Plus / Plus
Query: 200 aggaccaagagcaatttcaacgctgtcattctcaagaggcttttcatgagtaaaaccaac 259
|||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct: 1 aggaccaagagcaacttcaacgctgtcatcctcaagaggctcttcatgagcaaaaccaac 60
Query: 260 cgaccaccaatctccatgcgccgccttgtcaagtttatggaaggaaaggag---aagaac 316
|| |||||||| ||| ||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 61 cgcccaccaatttccctgcgccgccttgtcaagttcatggaaggaaaggaggagaagaac 120
Query: 317 attgctgtcattgttggcacagtcacagatgacaaaaggatccaggaggttccagcaatg 376
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attgctgtgattgttggcacagtcacagatgacaaaaggatccaggaggttccagcaatg 180
Query: 377 aaggttactgccctgaggttcacggagacagcaagggccaggattgtcaatgctggtggc 436
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 181 aaggttactgccctgaggttcaccgagacagcaagagccaggattgtcaatgctggtggg 240
Query: 437 gagtgcctcacatttgaccagcttgctcttcgtgctccacttggcgagaacacggtcctc 496
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 241 gagtgcctcacatttgaccagcttgctctccgtgctccacttggcgagaacacggtcctc 300
Query: 497 ttgaggggccccaagaatgcccgtgaggcagtgaggcactttggcaaggctcctggagtg 556
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct: 301 ttgaggggccccaagaatgctcgtgaggcggtgaggcactttggcaaggctcctggcgtg 360
Query: 557 ccgcacagccacaccaagccgtatgtgcgctccaagggaaggaagttcgagaaggctcgt 616
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 361 ccgcacagccacaccaagccatatgtgcgctccaagggaaggaagttcgaaaaggctcgt 420
Query: 617 ggcaggaggaacagccgtggattcaaggtttaaaa 651
|||||||||||||||||||||||||||||||||||
Sbjct: 421 ggcaggaggaacagccgtggattcaaggtttaaaa 455
Score = 196 bits (99), Expect = 2e-048
Identities = 153/170 (90%), Gaps = 7/170 (4%)
Strand = Plus / Plus
Query: 667 cgtgttgccatcagcatagtgcaaccgttgtgtttgatcagtcgacagtaattagtaatc 726
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 478 cgtgttgccatcagcatagtgcaaccgttctgtttgatcaatcgacagtaattagtaatc 537
Query: 727 actctgtaccgagattagtagcacaatttgttgtcctggtttgaattttggaagatattt 786
||| | |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 538 actttctaccgagagtagtagcacaatttgttgtcctggtttgaattttgaaagatattt 597
Query: 787 ----gatgtcgtctccttattatctactcgttactggttgagcacgaaga 832
||| ||||| || ||||||||| ||||||||||||||| |||||
Sbjct: 598 gaaggatttcgtcgcc---ttatctactggttactggttgagcaagaaga 644
>gb|CF480856.1|CF480856 POL1_68_H06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_68_H06_A002 3', mRNA sequence
Length = 680
Score = 716 bits (361), Expect = 0.0
Identities = 445/471 (94%), Gaps = 4/471 (0%)
Strand = Plus / Plus
Query: 185 cgtttcttggtcaggaggaccaagagcaatttcaacgctgtcattctcaagaggcttttc 244
|||||| |||| ||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct: 1 cgtttcctggttaggaggaccaagagcaacttcaacgctgtcatcctcaagaggctcttc 60
Query: 245 atgagtaaaaccaaccgacc-accaatctccatgcgccgccttgtcaagtttatggaagg 303
||||| ||||||||||| || |||||| ||| ||||||||||||||||||| ||||||||
Sbjct: 61 atgagcaaaaccaaccgccccaccaatttccgtgcgccgccttgtcaagttcatggaagg 120
Query: 304 aaaggag---aagaacattgctgtcattgttggcacagtcacagatgacaaaaggatcca 360
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaggaggagaagaacattgctgtgattgttggcacagtcacagatgacaaaaggatcca 180
Query: 361 ggaggttccagcaatgaaggttactgccctgaggttcacggagacagcaagggccaggat 420
||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct: 181 ggaggttccagcaatgaaggttactgccctgaggttcaccgggacagcaagagccaggat 240
Query: 421 tgtcaatgctggtggcgagtgcctcacatttgaccagcttgctcttcgtgctccacttgg 480
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 241 tgtcaatgctggtggggagtgcctcacatttgaccagcttgctctccgtgctccacttgg 300
Query: 481 cgagaacacggtcctcttgaggggccccaagaatgcccgtgaggcagtgaggcactttgg 540
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 301 cgagaacacggtcctcttgaggggccccaagaatgctcgtgaggcggtgaggcactttgg 360
Query: 541 caaggctcctggagtgccgcacagccacaccaagccgtatgtgcgctccaagggaaggaa 600
|| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 361 catggctcctggcgtgccgcacagccacaccaagccatatgtgcgctccaagggaaggaa 420
Query: 601 gttcgagaaggctcgtggcaggaggaacagccgtggattcaaggtttaaaa 651
|||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gttcgaaaaggctcgtggcaggaggaacagccgtggattcaaggtttaaaa 471
Score = 196 bits (99), Expect = 2e-048
Identities = 153/170 (90%), Gaps = 7/170 (4%)
Strand = Plus / Plus
Query: 667 cgtgttgccatcagcatagtgcaaccgttgtgtttgatcagtcgacagtaattagtaatc 726
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 494 cgtgttgccatcagcatagtgcaaccgttctgtttgatcaatcgacagtaattagtaatc 553
Query: 727 actctgtaccgagattagtagcacaatttgttgtcctggtttgaattttggaagatattt 786
||| | |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 554 actttctaccgagagtagtagcacaatttgttgtcctggtttgaattttgaaagatattt 613
Query: 787 ----gatgtcgtctccttattatctactcgttactggttgagcacgaaga 832
||| ||||| || ||||||||| ||||||||||||||| |||||
Sbjct: 614 gaaggatttcgtcgcc---ttatctactggttactggttgagcaagaaga 660
>gb|BF657231.1|BF657231 OV2_22_C06.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 494
Score = 704 bits (355), Expect = 0.0
Identities = 429/453 (94%), Gaps = 3/453 (0%)
Strand = Plus / Plus
Query: 67 cgccgccgcacccgcaggaatgggtatcgacctcgtcgccggtgggaggaataagaagac 126
|||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 42 cgccgccgcatccgcagccatgggtatcgacctcgtcgccggtgggaggaacaagaagac 101
Query: 127 caagcgcactgcgcccaagtctgacgatgtctacctcaagctcctcgtcaagctctaccg 186
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 102 caagcgcaccgcgcccaagtccgacgatgtctacctcaagctcctcgtcaagctctaccg 161
Query: 187 tttcttggtcaggaggaccaagagcaatttcaacgctgtcattctcaagaggcttttcat 246
|||| |||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 162 tttcctggttaggaggaccaagagcaacttcaacgctgtcatcctcaagaggctcttcat 221
Query: 247 gagtaaaaccaaccgaccaccaatctccatgcgccgccttgtcaagtttatggaaggaaa 306
||| ||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||
Sbjct: 222 gagcaaaaccaaccgcccaccaatttccctgcgccgccttgtcaagttcatggaaggaaa 281
Query: 307 ggag---aagaacattgctgtcattgttggcacagtcacagatgacaaaaggatccagga 363
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggaggagaagaacattgctgtgattgttggcacagtcacagatgacaaaaggatccagga 341
Query: 364 ggttccagcaatgaaggttactgccctgaggttcacggagacagcaagggccaggattgt 423
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 342 ggttccagcaatgaaggttactgccctgaggttcaccgagacagcaagagccaggattgt 401
Query: 424 caatgctggtggcgagtgcctcacatttgaccagcttgctcttcgtgctccacttggcga 483
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 402 caatgctggtggggagtgcctcacatttgaccagcttgctctccgtgctccacttggcga 461
Query: 484 gaacacggtcctcttgaggggccccaagaatgc 516
|||||||||||||||||||||||||||||||||
Sbjct: 462 gaacacggtcctcttgaggggccccaagaatgc 494
>gb|BQ655955.1|BQ655955 pRC0147 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC0147, mRNA sequence
Length = 637
Score = 688 bits (347), Expect = 0.0
Identities = 406/425 (95%), Gaps = 3/425 (0%)
Strand = Plus / Plus
Query: 230 ctcaagaggcttttcatgagtaaaaccaaccgaccaccaatctccatgcgccgccttgtc 289
||||||||||| |||||||| ||||||||||| |||||||| ||| ||||||||||||||
Sbjct: 4 ctcaagaggctcttcatgagcaaaaccaaccgcccaccaatttccctgcgccgccttgtc 63
Query: 290 aagtttatggaaggaaaggag---aagaacattgctgtcattgttggcacagtcacagat 346
||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 64 aagttcatggaaggaaaggaggagaagaacattgctgtgattgttggcacagtcacagat 123
Query: 347 gacaaaaggatccaggaggttccagcaatgaaggttactgccctgaggttcacggagaca 406
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 124 gacaagaggatccaggaggttccagcaatgaaggttactgccctgaggttcaccgagaca 183
Query: 407 gcaagggccaggattgtcaatgctggtggcgagtgcctcacatttgaccagcttgctctt 466
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 184 gcaagggccagaattgtcaatgctggtggggagtgcctcacatttgaccagcttgctctc 243
Query: 467 cgtgctccacttggcgagaacacggtcctcttgaggggccccaagaatgcccgtgaggca 526
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 244 cgtgctccacttggcgagaacacggtcctcttgaggggccccaagaatgctcgtgaggcg 303
Query: 527 gtgaggcactttggcaaggctcctggagtgccgcacagccacaccaagccgtatgtgcgc 586
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 304 gtgaggcactttggcaaggctcctggcgtgccgcacagccacaccaagccatatgtgcgc 363
Query: 587 tccaagggaaggaagttcgagaaggctcgtggcaggaggaacagccgtggattcaaggtt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tccaagggaaggaagttcgagaaggctcgtggcaggaggaacagccgtggattcaaggtt 423
Query: 647 taaaa 651
|||||
Sbjct: 424 taaaa 428
Score = 194 bits (98), Expect = 1e-047
Identities = 116/122 (95%)
Strand = Plus / Plus
Query: 667 cgtgttgccatcagcatagtgcaaccgttgtgtttgatcagtcgacagtaattagtaatc 726
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 451 cgtgttgccatcagcatagtgcaaccgttctgtttgatcaatcgacagtaattagtaatc 510
Query: 727 actctgtaccgagattagtagcacaatttgttgtcctggtttgaattttggaagatattt 786
||| | |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 511 actttctaccgagagtagtagcacaatttgttgtcctggtttgaattttgaaagatattt 570
Query: 787 ga 788
||
Sbjct: 571 ga 572
>gb|AW679772.1|AW679772 WS1_31_E12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 597
Score = 672 bits (339), Expect = 0.0
Identities = 395/413 (95%), Gaps = 3/413 (0%)
Strand = Plus / Plus
Query: 242 ttcatgagtaaaaccaaccgaccaccaatctccatgcgccgccttgtcaagtttatggaa 301
|||||||| ||||||||||| |||||||| ||| ||||||||||||||||||| ||||||
Sbjct: 3 ttcatgagcaaaaccaaccgcccaccaatttccctgcgccgccttgtcaagttcatggaa 62
Query: 302 ggaaaggag---aagaacattgctgtcattgttggcacagtcacagatgacaaaaggatc 358
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 63 ggaaaggaggagaagaacattgctgtgattgttggcacagtcacagatgacaaaaggatc 122
Query: 359 caggaggttccagcaatgaaggttactgccctgaggttcacggagacagcaagggccagg 418
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 123 caggaggttccagcaatgaaggttactgccctgaggttcaccgagacagcaagagccagg 182
Query: 419 attgtcaatgctggtggcgagtgcctcacatttgaccagcttgctcttcgtgctccactt 478
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 183 attgtcaatgctggtggggagtgcctcacatttgaccagcttgctctccgtgctccactt 242
Query: 479 ggcgagaacacggtcctcttgaggggccccaagaatgcccgtgaggcagtgaggcacttt 538
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 243 ggcgagaacacggtcctcttgaggggccccaagaatgctcgtgaggcggtgaggcacttt 302
Query: 539 ggcaaggctcctggagtgccgcacagccacaccaagccgtatgtgcgctccaagggaagg 598
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 303 ggcaaggctcctggcgtgccgcacagccacaccaagccatatgtgcgctccaagggaagg 362
Query: 599 aagttcgagaaggctcgtggcaggaggaacagccgtggattcaaggtttaaaa 651
|||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aagttcgaaaaggctcgtggcaggaggaacagccgtggattcaaggtttaaaa 415
Score = 194 bits (98), Expect = 1e-047
Identities = 116/122 (95%)
Strand = Plus / Plus
Query: 667 cgtgttgccatcagcatagtgcaaccgttgtgtttgatcagtcgacagtaattagtaatc 726
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 438 cgtgttgccatcagcatagtgcaaccgttctgtttgatcaatcgacagtaattagtaatc 497
Query: 727 actctgtaccgagattagtagcacaatttgttgtcctggtttgaattttggaagatattt 786
||| | |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 498 actttctaccgagagtagtagcacaatttgttgtcctggtttgaattttgaaagatattt 557
Query: 787 ga 788
||
Sbjct: 558 ga 559
>gb|BG357653.1|BG357653 OV2_32_F03.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 604
Score = 662 bits (334), Expect = 0.0
Identities = 387/404 (95%), Gaps = 3/404 (0%)
Strand = Plus / Plus
Query: 251 aaaaccaaccgaccaccaatctccatgcgccgccttgtcaagtttatggaaggaaaggag 310
||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||||
Sbjct: 1 aaaaccaaccgcccaccaatttccctgcgccgccttgtcaagttcatggaaggaaaggag 60
Query: 311 ---aagaacattgctgtcattgttggcacagtcacagatgacaaaaggatccaggaggtt 367
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gagaagaacattgctgtgattgttggcacagtcacagatgacaaaaggatccaggaggtt 120
Query: 368 ccagcaatgaaggttactgccctgaggttcacggagacagcaagggccaggattgtcaat 427
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 121 ccagcaatgaaggttactgccctgaggttcaccgagacagcaagagccaggattgtcaat 180
Query: 428 gctggtggcgagtgcctcacatttgaccagcttgctcttcgtgctccacttggcgagaac 487
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 181 gctggtggggagtgcctcacatttgaccagcttgctctccgtgctccacttggcgagaac 240
Query: 488 acggtcctcttgaggggccccaagaatgcccgtgaggcagtgaggcactttggcaaggct 547
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 241 acggtcctcttgaggggccccaagaatgctcgtgaggcggtgaggcactttggcaaggct 300
Query: 548 cctggagtgccgcacagccacaccaagccgtatgtgcgctccaagggaaggaagttcgag 607
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 301 cctggcgtgccgcacagccacaccaagccatatgtgcgctccaagggaaggaagttcgaa 360
Query: 608 aaggctcgtggcaggaggaacagccgtggattcaaggtttaaaa 651
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaggctcgtggcaggaggaacagccgtggattcaaggtttaaaa 404
Score = 192 bits (97), Expect = 4e-047
Identities = 152/169 (89%), Gaps = 6/169 (3%)
Strand = Plus / Plus
Query: 667 cgtgttgccatcagcatagtgcaaccgttgtgtttgatcagtcgacagtaattagtaatc 726
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 427 cgtgttgccatcagcatagtgcaaccgttctgtttgatcaatcgacagtaattagtaatc 486
Query: 727 actctgtaccgagattagtagcacaatttgttgtcctggtttgaattttggaagatatt- 785
||| | |||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 487 actttctaccgagagtagtagcacaatttgttgtcctggtttgaattttgaaagatattg 546
Query: 786 --tgatgtcgtctccttattatctactcgttactggttgagcacgaaga 832
||| ||||| || ||||||||| ||||||||||||||| |||||
Sbjct: 547 aaggatttcgtcgcc---ttatctactggttactggttgagcaagaaga 592
>gb|BG463804.1|BG463804 EM1_51_B03.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 602
Score = 656 bits (331), Expect = 0.0
Identities = 384/401 (95%), Gaps = 3/401 (0%)
Strand = Plus / Plus
Query: 254 accaaccgaccaccaatctccatgcgccgccttgtcaagtttatggaaggaaaggag--- 310
|||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||||
Sbjct: 1 accaaccgcccaccaatttccctgcgccgccttgtcaagttcatggaaggaaaggaggag 60
Query: 311 aagaacattgctgtcattgttggcacagtcacagatgacaaaaggatccaggaggttcca 370
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagaacattgctgtgattgttggcacagtcacagatgacaaaaggatccaggaggttcca 120
Query: 371 gcaatgaaggttactgccctgaggttcacggagacagcaagggccaggattgtcaatgct 430
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 121 gcaatgaaggttactgccctgaggttcaccgagacagcaagagccaggattgtcaatgct 180
Query: 431 ggtggcgagtgcctcacatttgaccagcttgctcttcgtgctccacttggcgagaacacg 490
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 181 ggtggggagtgcctcacatttgaccagcttgctctccgtgctccacttggcgagaacacg 240
Query: 491 gtcctcttgaggggccccaagaatgcccgtgaggcagtgaggcactttggcaaggctcct 550
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 241 gtcctcttgaggggccccaagaatgctcgtgaggcggtgaggcactttggcaaggctcct 300
Query: 551 ggagtgccgcacagccacaccaagccgtatgtgcgctccaagggaaggaagttcgagaag 610
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 301 ggcgtgccgcacagccacaccaagccatatgtgcgctccaagggaaggaagttcgaaaag 360
Query: 611 gctcgtggcaggaggaacagccgtggattcaaggtttaaaa 651
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gctcgtggcaggaggaacagccgtggattcaaggtttaaaa 401
Score = 196 bits (99), Expect = 2e-048
Identities = 153/170 (90%), Gaps = 7/170 (4%)
Strand = Plus / Plus
Query: 667 cgtgttgccatcagcatagtgcaaccgttgtgtttgatcagtcgacagtaattagtaatc 726
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 424 cgtgttgccatcagcatagtgcaaccgttctgtttgatcaatcgacagtaattagtaatc 483
Query: 727 actctgtaccgagattagtagcacaatttgttgtcctggtttgaattttggaagatattt 786
||| | |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 484 actttctaccgagagtagtagcacaatttgttgtcctggtttgaattttgaaagatattt 543
Query: 787 ----gatgtcgtctccttattatctactcgttactggttgagcacgaaga 832
||| ||||| || ||||||||| ||||||||||||||| |||||
Sbjct: 544 gaaggatttcgtcgcc---ttatctactggttactggttgagcaagaaga 590
>gb|BG357973.1|BG357973 OV2_32_F03.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 468
Score = 654 bits (330), Expect = 0.0
Identities = 404/428 (94%), Gaps = 3/428 (0%)
Strand = Plus / Plus
Query: 67 cgccgccgcacccgcaggaatgggtatcgacctcgtcgccggtgggaggaataagaagac 126
|||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 41 cgccgccgcatccgcagccatgggtatcgacctcgtcgccggtgggaggaacaagaagac 100
Query: 127 caagcgcactgcgcccaagtctgacgatgtctacctcaagctcctcgtcaagctctaccg 186
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 101 caagcgcaccgcgcccaagtccgacgatgtctacctcaagctcctcgtcaagctctaccg 160
Query: 187 tttcttggtcaggaggaccaagagcaatttcaacgctgtcattctcaagaggcttttcat 246
|||| |||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 161 tttcctggttaggaggaccaagagcaacttcaacgctgtcatcctcaagaggctcttcat 220
Query: 247 gagtaaaaccaaccgaccaccaatctccatgcgccgccttgtcaagtttatggaaggaa- 305
||| ||||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||
Sbjct: 221 gagcaaaaccaaccgcccaccaatttccctgcgccgccttgtcaagttcatggaaggaaa 280
Query: 306 --aggagaagaacattgctgtcattgttggcacagtcacagatgacaaaaggatccagga 363
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ggaggagaagaacattgctgtgattgttggcacagtcacagatgacaaaaggatccagga 340
Query: 364 ggttccagcaatgaaggttactgccctgaggttcacggagacagcaagggccaggattgt 423
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 341 ggttccagcaatgaaggttactgccctgaggttcaccgagacagcaagagccaggattgt 400
Query: 424 caatgctggtggcgagtgcctcacatttgaccagcttgctcttcgtgctccacttggcga 483
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 401 caatgctggtggggagtgcctcacatttgaccagcttgctctccgtgctccacttggcga 460
Query: 484 gaacacgg 491
||||||||
Sbjct: 461 gaacacgg 468
>gb|CD220585.1|CD220585 CCC1_68_A01.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_68_A01_A007 3', mRNA sequence
Length = 513
Score = 628 bits (317), Expect = e-178
Identities = 361/375 (96%), Gaps = 3/375 (0%)
Strand = Plus / Plus
Query: 280 ccgccttgtcaagtttatggaaggaaaggag---aagaacattgctgtcattgttggcac 336
||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 1 ccgccttgtcaagttcatggaaggaaaggaggagaagaacattgctgtgattgttggcac 60
Query: 337 agtcacagatgacaaaaggatccaggaggttccagcaatgaaggttactgccctgaggtt 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agtcacagatgacaaaaggatccaggaggttccagcaatgaaggttactgccctgaggtt 120
Query: 397 cacggagacagcaagggccaggattgtcaatgctggtggcgagtgcctcacatttgacca 456
||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 121 caccgagacagcaagagccaggattgtcaatgctggtggggagtgcctcacatttgacca 180
Query: 457 gcttgctcttcgtgctccacttggcgagaacacggtcctcttgaggggccccaagaatgc 516
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gcttgctctccgtgctccacttggcgagaacacggtcctcttgaggggccccaagaatgc 240
Query: 517 ccgtgaggcagtgaggcactttggcaaggctcctggagtgccgcacagccacaccaagcc 576
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 241 tcgtgaggcggtgaggcactttggcaaggctcctggcgtgccgcacagccacaccaagcc 300
Query: 577 gtatgtgcgctccaagggaaggaagttcgagaaggctcgtggcaggaggaacagccgtgg 636
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 301 atatgtgcgctccaagggaaggaagttcgaaaaggctcgtggcaggaggaacagccgtgg 360
Query: 637 attcaaggtttaaaa 651
|||||||||||||||
Sbjct: 361 attcaaggtttaaaa 375
Score = 174 bits (88), Expect = 9e-042
Identities = 103/108 (95%)
Strand = Plus / Plus
Query: 667 cgtgttgccatcagcatagtgcaaccgttgtgtttgatcagtcgacagtaattagtaatc 726
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 398 cgtgttgccatcagcatagtgcaaccgttctgtttgatcaatcgacagtaattagtaatc 457
Query: 727 actctgtaccgagattagtagcacaatttgttgtcctggtttgaattt 774
||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 458 actttctaccgagagtagtagcacaatttgttgtcctggtttgaattt 505
>gb|BE593290.1|BE593290 WS1_100_A02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 478
Score = 593 bits (299), Expect = e-167
Identities = 329/339 (97%)
Strand = Plus / Plus
Query: 313 gaacattgctgtcattgttggcacagtcacagatgacaaaaggatccaggaggttccagc 372
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gaacattgctgtgattgttggcacagtcacagatgacaaaaggatccaggaggttccagc 68
Query: 373 aatgaaggttactgccctgaggttcacggagacagcaagggccaggattgtcaatgctgg 432
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 69 aatgaaggttactgccctgaggttcaccgagacagcaagagccaggattgtcaatgctgg 128
Query: 433 tggcgagtgcctcacatttgaccagcttgctcttcgtgctccacttggcgagaacacggt 492
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 129 tggggagtgcctcacatttgaccagcttgctctccgtgctccacttggcgagaacacggt 188
Query: 493 cctcttgaggggccccaagaatgcccgtgaggcagtgaggcactttggcaaggctcctgg 552
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 189 cctcttgaggggccccaagaatgctcgtgaggcggtgaggcactttggcaaggctcctgg 248
Query: 553 agtgccgcacagccacaccaagccgtatgtgcgctccaagggaaggaagttcgagaaggc 612
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 249 cgtgccgcacagccacaccaagccatatgtgcgctccaagggaaggaagttcgaaaaggc 308
Query: 613 tcgtggcaggaggaacagccgtggattcaaggtttaaaa 651
|||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tcgtggcaggaggaacagccgtggattcaaggtttaaaa 347
Score = 168 bits (85), Expect = 6e-040
Identities = 103/109 (94%)
Strand = Plus / Plus
Query: 667 cgtgttgccatcagcatagtgcaaccgttgtgtttgatcagtcgacagtaattagtaatc 726
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 370 cgtgttgccatcagcatagtgcaaccgttctgtttgatcaatcgacagtaattagtaatc 429
Query: 727 actctgtaccgagattagtagcacaatttgttgtcctggtttgaatttt 775
||| | |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 430 actttctaccgagagtagtagcacaatttgttgttctggtttgaatttt 478
>gb|BE353117.1|BE353117 DG1_4_F11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 413
Score = 545 bits (275), Expect = e-153
Identities = 302/311 (97%)
Strand = Plus / Plus
Query: 341 acagatgacaaaaggatccaggaggttccagcaatgaaggttactgccctgaggttcacg 400
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acagatgacaaaaggatccaggaggttccagcaatgaaggttactgccctgaggttcacc 60
Query: 401 gagacagcaagggccaggattgtcaatgctggtggcgagtgcctcacatttgaccagctt 460
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 61 gagacagcaagagccaggattgtcaatgctggtggggagtgcctcacatttgaccagctt 120
Query: 461 gctcttcgtgctccacttggcgagaacacggtcctcttgaggggccccaagaatgcccgt 520
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 121 gctctccgtgctccacttggcgagaacacggtcctcttgaggggccccaagaatgctcgt 180
Query: 521 gaggcagtgaggcactttggcaaggctcctggagtgccgcacagccacaccaagccgtat 580
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 181 gaggcggtgaggcactttggcaaggctcctggcgtgccgcacagccacaccaagccatat 240
Query: 581 gtgcgctccaagggaaggaagttcgagaaggctcgtggcaggaggaacagccgtggattc 640
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 241 gtgcgctccaagggaaggaagttcgaaaaggctcgtggcaggaggaacagccgtggattc 300
Query: 641 aaggtttaaaa 651
|||||||||||
Sbjct: 301 aaggtttaaaa 311
Score = 119 bits (60), Expect = 5e-025
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 667 cgtgttgccatcagcatagtgcaaccgttgtgtttgatcagtcgacagtaattagtaatc 726
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 334 cgtgttgccatcagcatagtgcaaccgttctgtttgatcaatcgacagtaattagtaatc 393
Query: 727 actctgtaccgagattagta 746
||| | |||||||| |||||
Sbjct: 394 actttctaccgagagtagta 413
>gb|BG464804.1|BG464804 EM1_34_D09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 391
Score = 525 bits (265), Expect = e-147
Identities = 326/346 (94%), Gaps = 1/346 (0%)
Strand = Plus / Plus
Query: 306 aggagaagaacattgctgtcattgttggcacagtcacagatgacaaaaggatccaggagg 365
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 8 aggagaagaacattgctgtgattgttggcacagtcacagangacaaaaggatccaggagg 67
Query: 366 ttccagcaatgaaggttactgccctgaggttcacggagacagcaagggccaggattgtca 425
||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||
Sbjct: 68 ttccagcaatgaaggttctgnccctgaggttcaccgagacagcaagagccaggattgtca 127
Query: 426 atgctggtggcgagtgcctcacatttgaccagcttgctcttcgtgctccacttggcgaga 485
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 128 atgctggtggggagtgcctcacatttgaccagcttgctctccgtgctccacttggcgaga 187
Query: 486 acacggtcctcttgaggggccccaagaatgcccgtgaggcagtgaggcactttggcaagg 545
||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct: 188 acacggtcctcttgaggggccccaagaatgctcgtagngcggtgaggcactttggcaagg 247
Query: 546 ctcctggagtgccgcacagccacaccaagccgtatgtgcgctccaagggaaggaagttcg 605
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 248 ctcctggcgtgccgcacagccacaccaagccatatgtgcgctccaagggaaggaagtt-g 306
Query: 606 agaaggctcgtggcaggaggaacagccgtggattcaaggtttaaaa 651
| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 307 aaaaggctcgtggcaggaggaacagccgtggattcaaggttaaaaa 352
>gb|AW677303.1|AW677303 DG1_5_G07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 465
Score = 511 bits (258), Expect = e-143
Identities = 293/305 (96%)
Strand = Plus / Plus
Query: 347 gacaaaaggatccaggaggttccagcaatgaaggttactgccctgaggttcacggagaca 406
|||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||
Sbjct: 1 gacaaaaggatccaggaggttccatcaatgaaggttactgccctgaggttcnccgagaca 60
Query: 407 gcaagggccaggattgtcaatgctggtggcgagtgcctcacatttgaccagcttgctctt 466
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 61 gcaagagccaggattgtcaatgctggtggggagtgcctcacatttgaccagcttgctctc 120
Query: 467 cgtgctccacttggcgagaacacggtcctcttgaggggccccaagaatgcccgtgaggca 526
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 121 cgtgctccacttggcgagaacacggtcctcttgaggggccccaagaatgctcgtgaggcg 180
Query: 527 gtgaggcactttggcaaggctcctggagtgccgcacagccacaccaagccgtatgtgcgc 586
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 181 gtgaggcactttggcaaggctcctggcgtgccgcacagccacaccaagccatatgtgcgc 240
Query: 587 tccaagggaaggaagttcgagaaggctcgtggcaggaggaacagccgtggattcaaggtt 646
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 241 tccaagggaaggaagttcgaaaaggctcgtggcaggaggaacacccgtggattcaaggtt 300
Query: 647 taaaa 651
|||||
Sbjct: 301 taaaa 305
Score = 186 bits (94), Expect = 2e-045
Identities = 115/122 (94%)
Strand = Plus / Plus
Query: 667 cgtgttgccatcagcatagtgcaaccgttgtgtttgatcagtcgacagtaattagtaatc 726
||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct: 328 cgtgttgccatcagcatagtgcaaccgttctgtttgatcaatcgccagtaattagtaatc 387
Query: 727 actctgtaccgagattagtagcacaatttgttgtcctggtttgaattttggaagatattt 786
||| | |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 388 actttctaccgagagtagtagcacaatttgttgtcctggtttgaattttgaaagatattt 447
Query: 787 ga 788
||
Sbjct: 448 ga 449
>gb|AW923118.1|AW923118 DG1_49_C10.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 383
Score = 511 bits (258), Expect = e-143
Identities = 323/344 (93%), Gaps = 3/344 (0%)
Strand = Plus / Plus
Query: 67 cgccgccgcacccgcaggaatgggtatcgacctcgtcgccggtgggaggaataagaagac 126
|||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 40 cgccgccgcatccgcagccatgggtatcgacctcgtcgccggtgggaggaacaagaagac 99
Query: 127 caagcgcactgcgcccaagtctgacgatgtctacctcaagctcctcgtcaagctctaccg 186
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 100 caagcgcaccgcgcccaagtccgacgatgtctacctcaagctcctcgtcaagctctaccg 159
Query: 187 tttcttggtcaggaggaccaagagcaatttcaacgctgtcattctcaagaggcttttcat 246
|||| |||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 160 tttcctggttaggaggaccaagagcaacttcaacgctgtcatcctcaagaggctcttcat 219
Query: 247 gagtaaaaccaaccgaccaccaatctccatgcgccgccttgtcaagtttatggaaggaa- 305
||| ||||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||
Sbjct: 220 gagcaaaaccaaccgcccaccaatttccctgcgccgccttgtcaagttcatggaaggaaa 279
Query: 306 --aggagaagaacattgctgtcattgttggcacagtcacagatgacaaaaggatccagga 363
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ggaggagaagaacattgctgtgattgttggcacagtcacagatgacaaaaggatccagga 339
Query: 364 ggttccagcaatgaaggttactgccctgaggttcacggagacag 407
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 340 ggttccagcaatgaaggttactgccctgaggttcaccgagacag 383
>gb|BG464969.1|BG464969 EM1_34_D09.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 373
Score = 478 bits (241), Expect = e-133
Identities = 303/323 (93%), Gaps = 3/323 (0%)
Strand = Plus / Plus
Query: 67 cgccgccgcacccgcaggaatgggtatcgacctcgtcgccggtgggaggaataagaagac 126
|||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 51 cgccgccgcatccgcagccatgggtatcgacctcgtcgccggtgggaggaacaagaagac 110
Query: 127 caagcgcactgcgcccaagtctgacgatgtctacctcaagctcctcgtcaagctctaccg 186
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 111 caagcgcaccgcgcccaagtccgacgatgtctacctcaagctcctcgtcaagctctaccg 170
Query: 187 tttcttggtcaggaggaccaagagcaatttcaacgctgtcattctcaagaggcttttcat 246
|||| |||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 171 tttcctggttaggaggaccaagagcaacttcaacgctgtcatcctcaagaggctcttcat 230
Query: 247 gagtaaaaccaaccgaccaccaatctccatgcgccgccttgtcaagtttatggaaggaa- 305
||| ||||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||
Sbjct: 231 gagcaaaaccaaccgcccaccaatttccctgcgccgccttgtcaagttcatggaaggaaa 290
Query: 306 --aggagaagaacattgctgtcattgttggcacagtcacagatgacaaaaggatccagga 363
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ggaggagaagaacattgctgtgattgttggcacagtcacagatgacaaaaggatccagga 350
Query: 364 ggttccagcaatgaaggttactg 386
|||||||||||||||||||||||
Sbjct: 351 ggttccagcaatgaaggttactg 373
>gb|AW287531.2|AW287531 LG1_242_C03.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 365
Score = 474 bits (239), Expect = e-132
Identities = 301/321 (93%), Gaps = 3/321 (0%)
Strand = Plus / Plus
Query: 67 cgccgccgcacccgcaggaatgggtatcgacctcgtcgccggtgggaggaataagaagac 126
|||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 45 cgccgccgcatccgcagccatgggtatcgacctcgtcgccggtgggaggaacaagaagac 104
Query: 127 caagcgcactgcgcccaagtctgacgatgtctacctcaagctcctcgtcaagctctaccg 186
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 105 caagcgcaccgcgcccaagtccgacgatgtctacctcaagctcctcgtcaagctctaccg 164
Query: 187 tttcttggtcaggaggaccaagagcaatttcaacgctgtcattctcaagaggcttttcat 246
|||| |||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 165 tttcctggttaggaggaccaagagcaacttcaacgctgtcatcctcaagaggctcttcat 224
Query: 247 gagtaaaaccaaccgaccaccaatctccatgcgccgccttgtcaagtttatggaaggaa- 305
||| ||||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||
Sbjct: 225 gagcaaaaccaaccgcccaccaatttccctgcgccgccttgtcaagttcatggaaggaaa 284
Query: 306 --aggagaagaacattgctgtcattgttggcacagtcacagatgacaaaaggatccagga 363
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ggaggagaagaacattgctgtgattgttggcacagtcacagatgacaaaaggatccagga 344
Query: 364 ggttccagcaatgaaggttac 384
|||||||||||||||||||||
Sbjct: 345 ggttccagcaatgaaggttac 365
>gb|BG463717.1|BG463717 EM1_51_B03.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 371
Score = 474 bits (239), Expect = e-132
Identities = 301/321 (93%), Gaps = 3/321 (0%)
Strand = Plus / Plus
Query: 67 cgccgccgcacccgcaggaatgggtatcgacctcgtcgccggtgggaggaataagaagac 126
|||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 51 cgccgccgcatccgcagccatgggtatcgacctcgtcgccggtgggaggaacaagaagac 110
Query: 127 caagcgcactgcgcccaagtctgacgatgtctacctcaagctcctcgtcaagctctaccg 186
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 111 caagcgcaccgcgcccaagtccgacgatgtctacctcaagctcctcgtcaagctctaccg 170
Query: 187 tttcttggtcaggaggaccaagagcaatttcaacgctgtcattctcaagaggcttttcat 246
|||| |||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 171 tttcctggttaggaggaccaagagcaacttcaacgctgtcatcctcaagaggctcttcat 230
Query: 247 gagtaaaaccaaccgaccaccaatctccatgcgccgccttgtcaagtttatggaaggaa- 305
||| ||||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||
Sbjct: 231 gagcaaaaccaaccgcccaccaatttccctgcgccgccttgtcaagttcatggaaggaaa 290
Query: 306 --aggagaagaacattgctgtcattgttggcacagtcacagatgacaaaaggatccagga 363
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ggaggagaagaacattgctgtgattgttggcacagtcacagatgacaaaaggatccagga 350
Query: 364 ggttccagcaatgaaggttac 384
|||||||||||||||||||||
Sbjct: 351 ggttccagcaatgaaggttac 371
>gb|BE593704.1|BE593704 WS1_100_A02.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 305
Score = 468 bits (236), Expect = e-130
Identities = 278/294 (94%)
Strand = Plus / Plus
Query: 313 gaacattgctgtcattgttggcacagtcacagatgacaaaaggatccaggaggttccagc 372
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 9 gaacattgctgtgattgttggcacnntcacagatgacaaaaggatccaggaggttccagc 68
Query: 373 aatgaaggttactgccctgaggttcacggagacagcaagggccaggattgtcaatgctgg 432
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 69 aatgaaggttactgccctgaggttcaccgagacagcaagagccaggattgtcaatgctgg 128
Query: 433 tggcgagtgcctcacatttgaccagcttgctcttcgtgctccacttggcgagaacacggt 492
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 129 tggggagtgcctcacatttgaccagcttgctctccgtgctccacttggcgagaacacggt 188
Query: 493 cctcttgaggggccccaagaatgcccgtgaggcagtgaggcactttggcaaggctcctgg 552
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 189 cctcttgaggggccccaagaatgctcgtgaggcggtgaggcactttggcaaggctcctgn 248
Query: 553 agtgccgcacagccacaccaagccgtatgtgcgctccaagggaaggaagttcga 606
||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct: 249 cgtgccgcacaggcacaccaagccatatgtnnnctccaagggaaggaagttcga 302
>gb|AW677175.1|AW677175 DG1_5_G07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 368
Score = 466 bits (235), Expect = e-129
Identities = 300/321 (93%), Gaps = 3/321 (0%)
Strand = Plus / Plus
Query: 67 cgccgccgcacccgcaggaatgggtatcgacctcgtcgccggtgggaggaataagaagac 126
|||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 48 cgccgccgcatccgcagccatgggtatcgacctcgtcgccggtgggaggaacaagaagac 107
Query: 127 caagcgcactgcgcccaagtctgacgatgtctacctcaagctcctcgtcaagctctaccg 186
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 108 caagcgcaccgcgcccaagtccgacgatgtctacctcaagctcctcgtcaagctctaccg 167
Query: 187 tttcttggtcaggaggaccaagagcaatttcaacgctgtcattctcaagaggcttttcat 246
|||| |||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 168 tttcctggttaggaggaccaagagcaacttcaacgctgtcatcctcaagaggctcttcat 227
Query: 247 gagtaaaaccaaccgaccaccaatctccatgcgccgccttgtcaagtttatggaaggaa- 305
||| ||||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||
Sbjct: 228 gagcaaaaccaaccgcccaccaatttccctgcgccgccttgtcaagttcatggaaggaaa 287
Query: 306 --aggagaagaacattgctgtcattgttggcacagtcacagatgacaaaaggatccagga 363
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ggaggagaagaacattgctgtgattgttggcacagtcacagatgacaaaaggatccagga 347
Query: 364 ggttccagcaatgaaggttac 384
||||||| |||||||||||||
Sbjct: 348 ggttccatcaatgaaggttac 368
>gb|BG048776.1|BG048776 OV1_22_H05.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 285
Score = 466 bits (235), Expect = e-129
Identities = 271/283 (95%)
Strand = Plus / Plus
Query: 309 agaagaacattgctgtcattgttggcacagtcacagatgacaaaaggatccaggaggttc 368
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 agaagaacattgctgtgattgttggcacagtcacagatgacaaaaggatccaagaggttc 60
Query: 369 cagcaatgaaggttactgccctgaggttcacggagacagcaagggccaggattgtcaatg 428
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct: 61 cagcaatgaaggttactgccctgaggttcaccgacacagcaagagccaggattgtcaatg 120
Query: 429 ctggtggcgagtgcctcacatttgaccagcttgctcttcgtgctccacttggcgagaaca 488
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 121 ctggtggggagtgcctcacatttgaccagcttgctctccgtgctccacttggcgagaaca 180
Query: 489 cggtcctcttgaggggccccaagaatgcccgtgaggcagtgaggcactttggcaaggctc 548
|||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 181 cggtcctcttgaagggccccaagaatgctcgtgaggcggtgaggcactttggcaaggctc 240
Query: 549 ctggagtgccgcacagccacaccaagccgtatgtgcgctccaa 591
|||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 241 ctggcgtgccgcacagccacaccaagccatatgtgcgctccaa 283
>gb|BE360510.1|BE360510 DG1_64_A12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 333
Score = 422 bits (213), Expect = e-116
Identities = 278/299 (92%), Gaps = 3/299 (1%)
Strand = Plus / Plus
Query: 67 cgccgccgcacccgcaggaatgggtatcgacctcgtcgccggtgggaggaataagaagac 126
|||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 35 cgccgccgcatccgcagccatgggtatcgacctcgtcgccggtgggaggaacaagaagac 94
Query: 127 caagcgcactgcgcccaagtctgacgatgtctacctcaagctcctcgtcaagctctaccg 186
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 95 caagcgcaccgcgcccaagtccgacgatgtctacctcaagctcctcgtcaagctctaccg 154
Query: 187 tttcttggtcaggaggaccaagagcaatttcaacgctgtcattctcaagaggcttttcat 246
|||| |||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 155 tttcctggttaggaggaccaagagcaacttcaacgctgtcatcctcaagaggctcttcat 214
Query: 247 gagtaaaaccaaccgaccaccaatctccatgcgccgccttgtcaagtttatggaaggaa- 305
||| ||||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||
Sbjct: 215 gagcaaaaccaaccgcccaccaatttccctgcgccgccttgtcaagttcatggaaggaaa 274
Query: 306 --aggagaagaacattgctgtcattgttggcacagtcacagatgacaaaaggatccagg 362
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggaggagaagaacattgctgcgattgttggcacagtcacagatgacaaaaggatccagg 333
>gb|CN127236.1|CN127236 RHOH1_21_G05.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_G05_A002 5', mRNA sequence
Length = 809
Score = 375 bits (189), Expect = e-102
Identities = 468/561 (83%)
Strand = Plus / Plus
Query: 85 aatgggtatcgacctcgtcgccggtgggaggaataagaagaccaagcgcactgcgcccaa 144
||||||||||||||| |||||||| || |||| ||||||||||||||||| ||||||||
Sbjct: 63 aatgggtatcgacctagtcgccggcggccggaacaagaagaccaagcgcaccgcgcccaa 122
Query: 145 gtctgacgatgtctacctcaagctcctcgtcaagctctaccgtttcttggtcaggaggac 204
||| |||||||||||||||||||||||||||||||| ||||| ||| | || |||||||
Sbjct: 123 gtccgacgatgtctacctcaagctcctcgtcaagctgtaccgcttccttgttcggaggac 182
Query: 205 caagagcaatttcaacgctgtcattctcaagaggcttttcatgagtaaaaccaaccgacc 264
||||||||| ||||||||||| || || ||| |||| |||||||| || |||||||| ||
Sbjct: 183 caagagcaacttcaacgctgtgatcctgaagcggctcttcatgagcaagaccaaccgccc 242
Query: 265 accaatctccatgcgccgccttgtcaagtttatggaaggaaaggagaagaacattgctgt 324
|| |||| | |||||||| ||||| || ||||| || |||||||| | ||||||||
Sbjct: 243 gcctctctcgctccgccgcctcgtcaacttcatggagggcaaggagaatcagattgctgt 302
Query: 325 cattgttggcacagtcacagatgacaaaaggatccaggaggttccagcaatgaaggttac 384
|| || ||||| || || || ||||| ||| || | ||||| |||||||||||||| |
Sbjct: 303 gatagtgggcaccgtgactgacgacaagagggtctatgaggtaccagcaatgaaggtggc 362
Query: 385 tgccctgaggttcacggagacagcaagggccaggattgtcaatgctggtggcgagtgcct 444
||| || |||||||| ||||| || |||||| ||||||| ||||||||||||||||||||
Sbjct: 363 tgcgctcaggttcactgagacggccagggcccggattgtgaatgctggtggcgagtgcct 422
Query: 445 cacatttgaccagcttgctcttcgtgctccacttggcgagaacacggtcctcttgagggg 504
||| |||||||||||||| || ||||| || || ||| |||||||||| || |||||||
Sbjct: 423 cacctttgaccagcttgcgctgcgtgccccgctgggccagaacacggttctgctgagggg 482
Query: 505 ccccaagaatgcccgtgaggcagtgaggcactttggcaaggctcctggagtgccgcacag 564
|| |||||||| | || || |||| |||||||||| || ||||| ||||| |||||
Sbjct: 483 acctaagaatgctagggaagctgtgaagcactttggccctgcgcctggtgtgccccacag 542
Query: 565 ccacaccaagccgtatgtgcgctccaagggaaggaagttcgagaaggctcgtggcaggag 624
|||||| ||||| || |||||||||||||| |||||||| |||||||| | || |||||
Sbjct: 543 ccacacgaagccatacgtgcgctccaagggcaggaagtttgagaaggcaagaggaaggag 602
Query: 625 gaacagccgtggattcaaggt 645
||||||| | || ||||||||
Sbjct: 603 gaacagcagaggcttcaaggt 623
>gb|CN130926.1|CN130926 RHOH1_44_F10.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_44_F10_A002 5', mRNA sequence
Length = 809
Score = 375 bits (189), Expect = e-102
Identities = 468/561 (83%)
Strand = Plus / Plus
Query: 85 aatgggtatcgacctcgtcgccggtgggaggaataagaagaccaagcgcactgcgcccaa 144
||||||||||||||| |||||||| || |||| ||||||||||||||||| ||||||||
Sbjct: 63 aatgggtatcgacctagtcgccggcggccggaacaagaagaccaagcgcaccgcgcccaa 122
Query: 145 gtctgacgatgtctacctcaagctcctcgtcaagctctaccgtttcttggtcaggaggac 204
||| |||||||||||||||||||||||||||||||| ||||| ||| | || |||||||
Sbjct: 123 gtccgacgatgtctacctcaagctcctcgtcaagctgtaccgcttccttgttcggaggac 182
Query: 205 caagagcaatttcaacgctgtcattctcaagaggcttttcatgagtaaaaccaaccgacc 264
||||||||| ||||||||||| || || ||| |||| |||||||| || |||||||| ||
Sbjct: 183 caagagcaacttcaacgctgtgatcctgaagcggctcttcatgagcaagaccaaccgccc 242
Query: 265 accaatctccatgcgccgccttgtcaagtttatggaaggaaaggagaagaacattgctgt 324
|| |||| | |||||||| ||||| || ||||| || |||||||| | ||||||||
Sbjct: 243 gcctctctcgctccgccgcctcgtcaacttcatggagggcaaggagaatcagattgctgt 302
Query: 325 cattgttggcacagtcacagatgacaaaaggatccaggaggttccagcaatgaaggttac 384
|| || ||||| || || || ||||| ||| || | ||||| |||||||||||||| |
Sbjct: 303 gatagtgggcaccgtgactgacgacaagagggtctatgaggtaccagcaatgaaggtggc 362
Query: 385 tgccctgaggttcacggagacagcaagggccaggattgtcaatgctggtggcgagtgcct 444
||| || |||||||| ||||| || |||||| ||||||| ||||||||||||||||||||
Sbjct: 363 tgcgctcaggttcactgagacggccagggcccggattgtgaatgctggtggcgagtgcct 422
Query: 445 cacatttgaccagcttgctcttcgtgctccacttggcgagaacacggtcctcttgagggg 504
||| |||||||||||||| || ||||| || || ||| |||||||||| || |||||||
Sbjct: 423 cacctttgaccagcttgcgctgcgtgccccgctgggccagaacacggttctgctgagggg 482
Query: 505 ccccaagaatgcccgtgaggcagtgaggcactttggcaaggctcctggagtgccgcacag 564
|| |||||||| | || || |||| |||||||||| || ||||| ||||| |||||
Sbjct: 483 acctaagaatgctagggaagctgtgaagcactttggccctgcgcctggtgtgccccacag 542
Query: 565 ccacaccaagccgtatgtgcgctccaagggaaggaagttcgagaaggctcgtggcaggag 624
|||||| ||||| || |||||||||||||| |||||||| |||||||| | || |||||
Sbjct: 543 ccacacgaagccatacgtgcgctccaagggcaggaagtttgagaaggcaagaggaaggag 602
Query: 625 gaacagccgtggattcaaggt 645
||||||| | || ||||||||
Sbjct: 603 gaacagcagaggcttcaaggt 623
>gb|CN130940.1|CN130940 RHOH1_44_H04.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_44_H04_A002 5', mRNA sequence
Length = 816
Score = 375 bits (189), Expect = e-102
Identities = 468/561 (83%)
Strand = Plus / Plus
Query: 85 aatgggtatcgacctcgtcgccggtgggaggaataagaagaccaagcgcactgcgcccaa 144
||||||||||||||| |||||||| || |||| ||||||||||||||||| ||||||||
Sbjct: 63 aatgggtatcgacctagtcgccggcggccggaacaagaagaccaagcgcaccgcgcccaa 122
Query: 145 gtctgacgatgtctacctcaagctcctcgtcaagctctaccgtttcttggtcaggaggac 204
||| |||||||||||||||||||||||||||||||| ||||| ||| | || |||||||
Sbjct: 123 gtccgacgatgtctacctcaagctcctcgtcaagctgtaccgcttccttgttcggaggac 182
Query: 205 caagagcaatttcaacgctgtcattctcaagaggcttttcatgagtaaaaccaaccgacc 264
||||||||| ||||||||||| || || ||| |||| |||||||| || |||||||| ||
Sbjct: 183 caagagcaacttcaacgctgtgatcctgaagcggctcttcatgagcaagaccaaccgccc 242
Query: 265 accaatctccatgcgccgccttgtcaagtttatggaaggaaaggagaagaacattgctgt 324
|| |||| | |||||||| ||||| || ||||| || |||||||| | ||||||||
Sbjct: 243 gcctctctcgctccgccgcctcgtcaacttcatggagggcaaggagaatcagattgctgt 302
Query: 325 cattgttggcacagtcacagatgacaaaaggatccaggaggttccagcaatgaaggttac 384
|| || ||||| || || || ||||| ||| || | ||||| |||||||||||||| |
Sbjct: 303 gatagtgggcaccgtgactgacgacaagagggtctatgaggtaccagcaatgaaggtggc 362
Query: 385 tgccctgaggttcacggagacagcaagggccaggattgtcaatgctggtggcgagtgcct 444
||| || |||||||| ||||| || |||||| ||||||| ||||||||||||||||||||
Sbjct: 363 tgcgctcaggttcactgagacggccagggcccggattgtgaatgctggtggcgagtgcct 422
Query: 445 cacatttgaccagcttgctcttcgtgctccacttggcgagaacacggtcctcttgagggg 504
||| |||||||||||||| || ||||| || || ||| |||||||||| || |||||||
Sbjct: 423 cacctttgaccagcttgcgctgcgtgccccgctgggccagaacacggttctgctgagggg 482
Query: 505 ccccaagaatgcccgtgaggcagtgaggcactttggcaaggctcctggagtgccgcacag 564
|| |||||||| | || || |||| |||||||||| || ||||| ||||| |||||
Sbjct: 483 acctaagaatgctagggaagctgtgaagcactttggccctgcgcctggtgtgccccacag 542
Query: 565 ccacaccaagccgtatgtgcgctccaagggaaggaagttcgagaaggctcgtggcaggag 624
|||||| ||||| || |||||||||||||| |||||||| |||||||| | || |||||
Sbjct: 543 ccacacgaagccatacgtgcgctccaagggcaggaagtttgagaaggcaagaggaaggag 602
Query: 625 gaacagccgtggattcaaggt 645
||||||| | || ||||||||
Sbjct: 603 gaacagcagaggcttcaaggt 623
>gb|CX607581.1|CX607581 ANR1_29_C03.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_29_C03_A002 5', mRNA sequence
Length = 715
Score = 355 bits (179), Expect = 5e-096
Identities = 455/547 (83%)
Strand = Plus / Plus
Query: 85 aatgggtatcgacctcgtcgccggtgggaggaataagaagaccaagcgcactgcgcccaa 144
||||||||||||||| |||||||| || |||| ||||||||||||||||| ||||||||
Sbjct: 73 aatgggtatcgacctagtcgccggcggccggaacaagaagaccaagcgcaccgcgcccaa 132
Query: 145 gtctgacgatgtctacctcaagctcctcgtcaagctctaccgtttcttggtcaggaggac 204
||| |||||||||||||||||||||||||||||||| ||||| ||| | || |||||||
Sbjct: 133 gtccgacgatgtctacctcaagctcctcgtcaagctgtaccgcttccttgttcggaggac 192
Query: 205 caagagcaatttcaacgctgtcattctcaagaggcttttcatgagtaaaaccaaccgacc 264
||||||||| ||||||||||| || || ||| |||| |||||||| || |||||||| ||
Sbjct: 193 caagagcaacttcaacgctgtgatcctgaagcggctcttcatgagcaagaccaaccgccc 252
Query: 265 accaatctccatgcgccgccttgtcaagtttatggaaggaaaggagaagaacattgctgt 324
|| |||| | || ||||| ||||| || ||||| || |||||||| | ||||||||
Sbjct: 253 gcctctctcgctccggcgcctcgtcaacttcatggagggcaaggagaatcagattgctgt 312
Query: 325 cattgttggcacagtcacagatgacaaaaggatccaggaggttccagcaatgaaggttac 384
|| || ||||| || || || ||||| ||| || | ||||| |||||||||||||| |
Sbjct: 313 gatagtgggcaccgtgactgacgacaagagggtctatgaggtaccagcaatgaaggtggc 372
Query: 385 tgccctgaggttcacggagacagcaagggccaggattgtcaatgctggtggcgagtgcct 444
||| || |||||||| ||||| || |||||| |||||| ||||||||||||||||||||
Sbjct: 373 tgcgctcaggttcactgagacggccagggcccggattgggaatgctggtggcgagtgcct 432
Query: 445 cacatttgaccagcttgctcttcgtgctccacttggcgagaacacggtcctcttgagggg 504
||| |||||||||||||| || ||||| || || ||| |||||||||| || |||||||
Sbjct: 433 cacctttgaccagcttgcgctgcgtgccccgctgggccagaacacggttctgctgagggg 492
Query: 505 ccccaagaatgcccgtgaggcagtgaggcactttggcaaggctcctggagtgccgcacag 564
|| |||||||| | || || |||| |||||||||| || ||||| ||||| |||||
Sbjct: 493 acctaagaatgctggggaagctgtgaagcactttggccctgcgcctggtgtgccccacag 552
Query: 565 ccacaccaagccgtatgtgcgctccaagggaaggaagttcgagaaggctcgtggcaggag 624
|||||| ||||| || |||||||||||||| |||||||| |||||||| | || |||||
Sbjct: 553 ccacacgaagccatacgtgcgctccaagggcaggaagtttgagaaggcaagaggaaggag 612
Query: 625 gaacagc 631
|||||||
Sbjct: 613 gaacagc 619
>gb|CN130857.1|CN130857 RHOH1_44_F10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_44_F10_A002 3', mRNA sequence
Length = 718
Score = 351 bits (177), Expect = 7e-095
Identities = 465/561 (82%)
Strand = Plus / Plus
Query: 85 aatgggtatcgacctcgtcgccggtgggaggaataagaagaccaagcgcactgcgcccaa 144
||||||||||||||| |||||||| || |||| ||||||||||||||||| ||||||||
Sbjct: 3 aatgggtatcgacctagtcgccggcggccggaacaagaagaccaagcgcaccgcgcccaa 62
Query: 145 gtctgacgatgtctacctcaagctcctcgtcaagctctaccgtttcttggtcaggaggac 204
|||||| ||||| |||||||||||||| |||||||| ||||| ||| | || |||||||
Sbjct: 63 gtctgaggatgtttacctcaagctcctagtcaagctgtaccgcttccttgttcggaggac 122
Query: 205 caagagcaatttcaacgctgtcattctcaagaggcttttcatgagtaaaaccaaccgacc 264
||||||||| ||||||||||| || || ||| ||||||||||||| || |||||||| |
Sbjct: 123 caagagcaacttcaacgctgtgatcctgaagcggcttttcatgagcaagaccaaccgccg 182
Query: 265 accaatctccatgcgccgccttgtcaagtttatggaaggaaaggagaagaacattgctgt 324
|| ||| | |||||||| ||||| || ||||| || |||||||| | ||||||||
Sbjct: 183 gcctttctggctccgccgcctcgtcaacttcatggagggcaaggagaatcagattgctgt 242
Query: 325 cattgttggcacagtcacagatgacaaaaggatccaggaggttccagcaatgaaggttac 384
|| || ||||| || || || ||||| ||| || | ||||| |||||||||||||| |
Sbjct: 243 gatagtgggcaccgtgactgacgacaagagggtctatgaggtaccagcaatgaaggtggc 302
Query: 385 tgccctgaggttcacggagacagcaagggccaggattgtcaatgctggtggcgagtgcct 444
||| || |||||||| ||||| || |||||| ||||||| ||||||||||||||||||||
Sbjct: 303 tgcgctcaggttcactgagacggccagggcccggattgtgaatgctggtggcgagtgcct 362
Query: 445 cacatttgaccagcttgctcttcgtgctccacttggcgagaacacggtcctcttgagggg 504
||| |||||||||||||| || ||||| || || ||| |||||||||| || ||||||||
Sbjct: 363 cacctttgaccagcttgcgctgcgtgccccgctgggccagaacacggttctgttgagggg 422
Query: 505 ccccaagaatgcccgtgaggcagtgaggcactttggcaaggctcctggagtgccgcacag 564
|| |||||||| | || || |||| |||||||||| || ||||| ||||| |||||
Sbjct: 423 acctaagaatgctagggaagctgtgaagcactttggccctgcgcctggtgtgccccacag 482
Query: 565 ccacaccaagccgtatgtgcgctccaagggaaggaagttcgagaaggctcgtggcaggag 624
||||| ||||| || |||||||||||||| |||||||| |||||||| | || |||||
Sbjct: 483 ccacaggaagccatacgtgcgctccaagggcaggaagtttgagaaggcaagaggaaggag 542
Query: 625 gaacagccgtggattcaaggt 645
||||||| | || ||||||||
Sbjct: 543 gaacagcagaggcttcaaggt 563
>gb|CW043685.1|CW043685 104_279_10508516_114_30276 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10508516, DNA
sequence
Length = 624
Score = 331 bits (167), Expect = 7e-089
Identities = 182/187 (97%)
Strand = Plus / Minus
Query: 306 aggagaagaacattgctgtcattgttggcacagtcacagatgacaaaaggatccaggagg 365
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aggagaagaacattgctgtgattgttggcacagtcacagatgacaaaaggatccaggagg 459
Query: 366 ttccagcaatgaaggttactgccctgaggttcacggagacagcaagggccaggattgtca 425
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 458 ttccagcaatgaaggttactgccctgaggttcaccgagacagcaagagccaggattgtca 399
Query: 426 atgctggtggcgagtgcctcacatttgaccagcttgctcttcgtgctccacttggcgaga 485
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 398 atgctggtggggagtgcctcacatttgaccagcttgctctccgtgctccacttggcgaga 339
Query: 486 acacggt 492
|||||||
Sbjct: 338 acacggt 332
>gb|CN130870.1|CN130870 RHOH1_44_H04.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_44_H04_A002 3', mRNA sequence
Length = 741
Score = 252 bits (127), Expect = 5e-065
Identities = 367/447 (82%)
Strand = Plus / Plus
Query: 199 gaggaccaagagcaatttcaacgctgtcattctcaagaggcttttcatgagtaaaaccaa 258
||||||||||||||| ||||||||||| || || ||| |||| |||||||| || |||||
Sbjct: 1 gaggaccaagagcaacttcaacgctgtgatcctgaagcggctcttcatgagcaagaccaa 60
Query: 259 ccgaccaccaatctccatgcgccgccttgtcaagtttatggaaggaaaggagaagaacat 318
||| || || |||| || ||| |||| ||||| || ||||| || |||||||| | ||
Sbjct: 61 ccgcccgcctctctcgatccgctgcctcgtcaacttcatggagggcaaggagaatcagat 120
Query: 319 tgctgtcattgttggcacagtcacagatgacaaaaggatccaggaggttccagcaatgaa 378
|||||| || || ||||| || || || ||||| ||| || | ||||| |||||||||||
Sbjct: 121 tgctgtgatagtgggcaccgtgactgacgacaagagggtctatgaggtcccagcaatgaa 180
Query: 379 ggttactgccctgaggttcacggagacagcaagggccaggattgtcaatgctggtggcga 438
||| |||| || |||||||| ||||| || |||||| ||||||| ||||||||||||||
Sbjct: 181 ggtggctgcgctcaggttcactgagacggccagggcccggattgtgaatgctggtggcga 240
Query: 439 gtgcctcacatttgaccagcttgctcttcgtgctccacttggcgagaacacggtcctctt 498
||||||||| |||||||||||||| || ||||| || || ||| |||||||||| || |
Sbjct: 241 gtgcctcacctttgaccagcttgcgctgcgtgccccgctgggccagaacacggttctgct 300
Query: 499 gaggggccccaagaatgcccgtgaggcagtgaggcactttggcaaggctcctggagtgcc 558
|||||| || |||||||| | || || |||| |||||||||| || ||||| |||||
Sbjct: 301 gaggggacctaagaatgctagggaagctgtgaagcactttggccctgcgcctggtgtgcc 360
Query: 559 gcacagccacaccaagccgtatgtgcgctccaagggaaggaagttcgagaaggctcgtgg 618
||||||||||| ||||| || |||||||||||||| |||||||| |||||||| | ||
Sbjct: 361 ccacagccacacgaagccatacgtgcgctccaagggcaggaagtttgagaaggcaagagg 420
Query: 619 caggaggaacagccgtggattcaaggt 645
|||||||||||| | || ||||||||
Sbjct: 421 aaggaggaacagcagaggcttcaaggt 447
>gb|BE358850.1|BE358850 DG1_32_E01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 587
Score = 246 bits (124), Expect = 3e-063
Identities = 139/144 (96%)
Strand = Plus / Plus
Query: 508 caagaatgcccgtgaggcagtgaggcactttggcaaggctcctggagtgccgcacagcca 567
||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 309 caagaatgctcgtgaggcggtgaggcactttggcaaggctcctggcgtgccgcacagcca 368
Query: 568 caccaagccgtatgtgcgctccaagggaaggaagttcgagaaggctcgtggcaggaggaa 627
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 369 caccaagccatatgtgcgctccaagggaaggaagttcgaaaaggctcgtggcaggaggaa 428
Query: 628 cagccgtggattcaaggtttaaaa 651
||||||||||||||||||||||||
Sbjct: 429 cagccgtggattcaaggtttaaaa 452
Score = 170 bits (86), Expect = 1e-040
Identities = 104/110 (94%)
Strand = Plus / Plus
Query: 667 cgtgttgccatcagcatagtgcaaccgttgtgtttgatcagtcgacagtaattagtaatc 726
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 475 cgtgttgccatcagcatagtgcaaccgttctgtttgatcaatcgacagtaattagtaatc 534
Query: 727 actctgtaccgagattagtagcacaatttgttgtcctggtttgaattttg 776
||| | |||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 535 actttctaccgagagtagtagcacaatttgttgttctggtttgaattttg 584
>gb|CF485438.1|CF485438 POL1_31_B12.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_31_B12_A002 5', mRNA sequence
Length = 600
Score = 228 bits (115), Expect = 7e-058
Identities = 421/523 (80%)
Strand = Plus / Plus
Query: 86 atgggtatcgacctcgtcgccggtgggaggaataagaagaccaagcgcactgcgcccaag 145
||||||||||||||||||||||| || | || ||||||||||||||||| |||||||||
Sbjct: 78 atgggtatcgacctcgtcgccggcggccgcaacaagaagaccaagcgcacggcgcccaag 137
Query: 146 tctgacgatgtctacctcaagctcctcgtcaagctctaccgtttcttggtcaggaggacc 205
|| ||||||||||| ||||||||||| ||||||||||||| ||| | ||| | |||||
Sbjct: 138 tccgacgatgtctatctcaagctccttgtcaagctctaccacttccttgtccgtaggaca 197
Query: 206 aagagcaatttcaacgctgtcattctcaagaggcttttcatgagtaaaaccaaccgacca 265
|||||||| |||||||| || || || ||| | || |||||||| || |||||||| ||
Sbjct: 198 aagagcaacttcaacgccgtgatcctgaagcgactgttcatgagcaagaccaaccgcccg 257
Query: 266 ccaatctccatgcgccgccttgtcaagtttatggaaggaaaggagaagaacattgctgtc 325
|| |||| ||||||||||| || ||||| ||||| || ||| | | ||||| ||
Sbjct: 258 ccgctctcgatgcgccgcctcgttaagttcatggaggggaagagtgatcagattgccgtt 317
Query: 326 attgttggcacagtcacagatgacaaaaggatccaggaggttccagcaatgaaggttact 385
||||| ||||| || || || ||||| |||||| | ||||| || || |||||||| |
Sbjct: 318 attgtgggcaccgtgactgacgacaagaggatcaacgaggtgccggcgatgaaggtgtgt 377
Query: 386 gccctgaggttcacggagacagcaagggccaggattgtcaatgctggtggcgagtgcctc 445
|| || |||||||| |||||||| ||||||||||| ||||||| ||||| |||||||||
Sbjct: 378 gcgctcaggttcactgagacagctagggccaggatcatcaatgccggtggagagtgcctc 437
Query: 446 acatttgaccagcttgctcttcgtgctccacttggcgagaacacggtcctcttgaggggc 505
|| || ||||||||||| || ||||| || | || | |||||||| ||| |||||||
Sbjct: 438 accttcgaccagcttgcgctccgtgccccgcacgggcaaaacacggttctcctgaggggt 497
Query: 506 cccaagaatgcccgtgaggcagtgaggcactttggcaaggctcctggagtgccgcacagc 565
|| ||||| || | || || || | |||||| ||| || || |||||||| ||||||
Sbjct: 498 cctaagaacgctagggaagctgttaagcacttcggccctgcaccaggagtgccacacagc 557
Query: 566 cacaccaagccgtatgtgcgctccaagggaaggaagttcgaga 608
||||||||||| || || ||||| |||||||||||||| ||||
Sbjct: 558 cacaccaagccttacgttcgctcaaagggaaggaagtttgaga 600
>gb|CF483535.1|CF483535 POL1_22_H11.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_22_H11_A002 5', mRNA sequence
Length = 596
Score = 226 bits (114), Expect = 3e-057
Identities = 417/518 (80%)
Strand = Plus / Plus
Query: 86 atgggtatcgacctcgtcgccggtgggaggaataagaagaccaagcgcactgcgcccaag 145
||||||||||||||||||||||| || | || ||||||||||||||||| |||||||||
Sbjct: 75 atgggtatcgacctcgtcgccggcggccgcaacaagaagaccaagcgcacggcgcccaag 134
Query: 146 tctgacgatgtctacctcaagctcctcgtcaagctctaccgtttcttggtcaggaggacc 205
|| ||||||||||| ||||||||||| |||||||||||||| ||| | ||| | |||||
Sbjct: 135 tccgacgatgtctatctcaagctccttgtcaagctctaccgcttccttgtccgtaggaca 194
Query: 206 aagagcaatttcaacgctgtcattctcaagaggcttttcatgagtaaaaccaaccgacca 265
|||||||| |||||||| || || || ||| | || |||||||| || |||||||| ||
Sbjct: 195 aagagcaacttcaacgccgtgatcctgaagcgactgttcatgagcaagaccaaccgcccg 254
Query: 266 ccaatctccatgcgccgccttgtcaagtttatggaaggaaaggagaagaacattgctgtc 325
|| |||| ||||||||||| || ||||| ||||| || ||| | | ||||| ||
Sbjct: 255 ccgctctcgatgcgccgcctcgttaagttcatggaggggaagagtgatcagattgccgtt 314
Query: 326 attgttggcacagtcacagatgacaaaaggatccaggaggttccagcaatgaaggttact 385
||||| ||||| || || || ||||| |||||| | ||||| || || ||||| || |
Sbjct: 315 attgtgggcaccgtgactgacgacaagaggatcaacgaggtgccggcgatgaaagtgtgt 374
Query: 386 gccctgaggttcacggagacagcaagggccaggattgtcaatgctggtggcgagtgcctc 445
|| || |||||||| |||||||| ||||||||||| ||||||| ||||| |||||||||
Sbjct: 375 gcgctcaggttcactgagacagctagggccaggatcatcaatgccggtggagagtgcctc 434
Query: 446 acatttgaccagcttgctcttcgtgctccacttggcgagaacacggtcctcttgaggggc 505
|| || ||||||||||| || ||||| || || || | |||||||| ||| |||||||
Sbjct: 435 accttcgaccagcttgcgctccgtgccccgctcgggcaaaacacggttctcctgaggggt 494
Query: 506 cccaagaatgcccgtgaggcagtgaggcactttggcaaggctcctggagtgccgcacagc 565
|| ||||| || | || || || | |||||| ||| || || |||||||| ||||||
Sbjct: 495 cctaagaacgctagggaagctgttaagcacttcggccctgcaccaggagtgccacacagc 554
Query: 566 cacaccaagccgtatgtgcgctccaagggaaggaagtt 603
||||||||||| || || ||||| ||||||| ||||||
Sbjct: 555 cacaccaagccttacgttcgctcaaagggaaagaagtt 592
>gb|CF759226.1|CF759226 DSAF1_42_E07.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_42_E07_A011 5', mRNA sequence
Length = 503
Score = 214 bits (108), Expect = 1e-053
Identities = 348/428 (81%)
Strand = Plus / Plus
Query: 86 atgggtatcgacctcgtcgccggtgggaggaataagaagaccaagcgcactgcgcccaag 145
||||||||||||||||||||||| || | || ||||||||||||||||| |||||||||
Sbjct: 51 atgggtatcgacctcgtcgccggcggccgcaacaagaagaccaagcgcacggcgcccaag 110
Query: 146 tctgacgatgtctacctcaagctcctcgtcaagctctaccgtttcttggtcaggaggacc 205
|| ||||||||||| ||||||||||| |||||||||||||| ||| | ||| | |||||
Sbjct: 111 tccgacgatgtctatctcaagctccttgtcaagctctaccgcttccttgtccgtaggaca 170
Query: 206 aagagcaatttcaacgctgtcattctcaagaggcttttcatgagtaaaaccaaccgacca 265
|||||||| |||||||| || || || ||| | || |||||||| || |||||||| ||
Sbjct: 171 aagagcaacttcaacgccgtgatcctgaagcgactgttcatgagcaagaccaaccgcccg 230
Query: 266 ccaatctccatgcgccgccttgtcaagtttatggaaggaaaggagaagaacattgctgtc 325
|| |||| ||||||||||| || ||||| ||||| || ||| | | ||||| ||
Sbjct: 231 ccgctctcgatgcgccgcctcgttaagttcatggaggggaagagtgatcagattgccgtt 290
Query: 326 attgttggcacagtcacagatgacaaaaggatccaggaggttccagcaatgaaggttact 385
||||| ||||| || || || ||||| |||||| | ||||| || || |||||||| |
Sbjct: 291 attgtgggcaccgtgactgacgacaagaggatcaacgaggtgccggcgatgaaggtgtgt 350
Query: 386 gccctgaggttcacggagacagcaagggccaggattgtcaatgctggtggcgagtgcctc 445
|| || |||||||| |||||||| ||||||||||| ||||||| ||||| |||||||||
Sbjct: 351 gcgctcaggttcactgagacagctagggccaggatcatcaatgccggtggagagtgcctc 410
Query: 446 acatttgaccagcttgctcttcgtgctccacttggcgagaacacggtcctcttgaggggc 505
|| || ||||||||||| || ||||| || || || || ||||||| ||| |||||||
Sbjct: 411 accttcgaccagcttgcgctccgtgccccgctcggggaagacacggttctcctgaggggt 470
Query: 506 cccaagaa 513
|| |||||
Sbjct: 471 cctaagaa 478
>gb|CX607497.1|CX607497 ANR1_29_C03.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_29_C03_A002 3', mRNA sequence
Length = 669
Score = 214 bits (108), Expect = 1e-053
Identities = 303/368 (82%)
Strand = Plus / Plus
Query: 278 cgccgccttgtcaagtttatggaaggaaaggagaagaacattgctgtcattgttggcaca 337
|||||||| ||||| || ||||| || |||||||| | |||||||| || || |||||
Sbjct: 4 cgccgcctcgtcaacttcatggagggcaaggagaatcagattgctgtgatagtgggcacc 63
Query: 338 gtcacagatgacaaaaggatccaggaggttccagcaatgaaggttactgccctgaggttc 397
|| || || ||||| ||| || | ||||| |||||||||||||| |||| || ||||||
Sbjct: 64 gtgactgacgacaagagggtctatgaggtaccagcaatgaaggtggctgcgctcaggttc 123
Query: 398 acggagacagcaagggccaggattgtcaatgctggtggcgagtgcctcacatttgaccag 457
|| ||||| || |||||| ||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 124 actgagacggccagggcccggattgtgaatgctggtggcgagtgcctcacctttgaccag 183
Query: 458 cttgctcttcgtgctccacttggcgagaacacggtcctcttgaggggccccaagaatgcc 517
||||| || ||||| || || ||| |||||||||| || ||||||| || ||||||||
Sbjct: 184 cttgcgctgcgtgccccgctgggccagaacacggttctgctgaggggacctaagaatgct 243
Query: 518 cgtgaggcagtgaggcactttggcaaggctcctggagtgccgcacagccacaccaagccg 577
| || || |||| |||||||||| || ||||| ||||| ||||||||||| |||||
Sbjct: 244 agggaagctgtgaagcactttggccctgcgcctggtgtgccccacagccacacgaagcca 303
Query: 578 tatgtgcgctccaagggaaggaagttcgagaaggctcgtggcaggaggaacagccgtgga 637
|| |||||||||||||| |||||||| |||||||| | || |||||||||||| | ||
Sbjct: 304 tacgtgcgctccaagggcaggaagtttgagaaggcaagaggaaggaggaacagcagaggc 363
Query: 638 ttcaaggt 645
||||||||
Sbjct: 364 ttcaaggt 371
>gb|BG049071.1|BG049071 OV1_22_H05.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 243
Score = 212 bits (107), Expect = 4e-053
Identities = 125/131 (95%)
Strand = Plus / Plus
Query: 521 gaggcagtgaggcactttggcaaggctcctggagtgccgcacagccacaccaagccgtat 580
||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||| |||
Sbjct: 1 gaggcggtgaggcactttggcaaggctcatggtgtgccgcacagccacaccaagccatat 60
Query: 581 gtgcgctccaagggaaggaagttcgagaaggctcgtggcaggaggaacagccgtggattc 640
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61 gtgcgctccaagggaagaaagttcgaaaaggctcgtggcaggaggaacagccgtggattc 120
Query: 641 aaggtttaaaa 651
|||||||||||
Sbjct: 121 aaggtttaaaa 131
Score = 131 bits (66), Expect = 1e-028
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 667 cgtgttgccatcagcatagtgcaaccgttgtgtttgatcagtcgacagtaattagtaatc 726
||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||
Sbjct: 154 cgtgttgccatcagcatagtgcatccgttctgtttgatcaatcgacagtaattagtaatc 213
Query: 727 actctgtaccgagattagtagcacaatttg 756
||| | |||||||| |||||||||||||||
Sbjct: 214 actttctaccgagagtagtagcacaatttg 243
>gb|CF760222.1|CF760222 DSAF1_57_A03.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_57_A03_A011 5', mRNA sequence
Length = 454
Score = 210 bits (106), Expect = 2e-052
Identities = 316/386 (81%)
Strand = Plus / Plus
Query: 86 atgggtatcgacctcgtcgccggtgggaggaataagaagaccaagcgcactgcgcccaag 145
||||||||||||||||||||||| || | || ||||||||||||||||| |||||||||
Sbjct: 50 atgggtatcgacctcgtcgccggcggccgcaacaagaagaccaagcgcacggcgcccaag 109
Query: 146 tctgacgatgtctacctcaagctcctcgtcaagctctaccgtttcttggtcaggaggacc 205
|| ||||||||||| ||||||||||| |||||||||||||| ||| | ||| | |||||
Sbjct: 110 tccgacgatgtctatctcaagctccttgtcaagctctaccgcttccttgtccgtaggaca 169
Query: 206 aagagcaatttcaacgctgtcattctcaagaggcttttcatgagtaaaaccaaccgacca 265
|||||||| |||||||| || || || ||| | || |||||||| || |||||||| ||
Sbjct: 170 aagagcaacttcaacgccgtgatcctgaagcgactgttcatgagcaagaccaaccgcccg 229
Query: 266 ccaatctccatgcgccgccttgtcaagtttatggaaggaaaggagaagaacattgctgtc 325
|| |||| ||||||||||| || ||||| ||||| || ||| | | ||||| ||
Sbjct: 230 ccgctctcgatgcgccgcctcgttaagttcatggaggggaagagtgatcagattgccgtt 289
Query: 326 attgttggcacagtcacagatgacaaaaggatccaggaggttccagcaatgaaggttact 385
||||| ||||| || || || ||||| |||||| | ||||| || || |||||||| |
Sbjct: 290 attgtgggcaccgtgactgacgacaagaggatcaacgaggtgccggcgatgaaggtgtgt 349
Query: 386 gccctgaggttcacggagacagcaagggccaggattgtcaatgctggtggcgagtgcctc 445
|| || |||||||| |||||||| ||||||||||| ||||||| ||||| |||||||||
Sbjct: 350 gcgctcaggttcactgagacagctagggccaggatcatcaatgccggtggagagtgcctc 409
Query: 446 acatttgaccagcttgctcttcgtgc 471
|| || ||||||||||| || |||||
Sbjct: 410 accttcgaccagcttgcgctccgtgc 435
>gb|AW678085.1|AW678085 WS1_13_G12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 370
Score = 196 bits (99), Expect = 2e-048
Identities = 153/170 (90%), Gaps = 7/170 (4%)
Strand = Plus / Plus
Query: 667 cgtgttgccatcagcatagtgcaaccgttgtgtttgatcagtcgacagtaattagtaatc 726
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 147 cgtgttgccatcagcatagtgcaaccgttctgtttgatcaatcgacagtaattagtaatc 206
Query: 727 actctgtaccgagattagtagcacaatttgttgtcctggtttgaattttggaagatattt 786
||| | |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 207 actttctaccgagagtagtagcacaatttgttgtcctggtttgaattttgaaagatattt 266
Query: 787 ----gatgtcgtctccttattatctactcgttactggttgagcacgaaga 832
||| ||||| || ||||||||| ||||||||||||||| |||||
Sbjct: 267 gaaggatttcgtcgcc---ttatctactggttactggttgagcaagaaga 313
Score = 192 bits (97), Expect = 4e-047
Identities = 113/117 (96%), Gaps = 1/117 (0%)
Strand = Plus / Plus
Query: 535 ctttggcaaggctcctggagtgccgcacagccacaccaagccgtatgtgcgctccaaggg 594
|||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||
Sbjct: 9 ctttggcaaggctcctggcgtgccgcacagc-acaccaagccatatgtgcgctccaaggg 67
Query: 595 aaggaagttcgagaaggctcgtggcaggaggaacagccgtggattcaaggtttaaaa 651
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaggaagttcgaaaaggctcgtggcaggaggaacagccgtggattcaaggtttaaaa 124
>gb|AW678167.1|AW678167 WS1_13_G12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 351
Score = 196 bits (99), Expect = 2e-048
Identities = 153/170 (90%), Gaps = 7/170 (4%)
Strand = Plus / Plus
Query: 667 cgtgttgccatcagcatagtgcaaccgttgtgtttgatcagtcgacagtaattagtaatc 726
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 147 cgtgttgccatcagcatagtgcaaccgttctgtttgatcaatcgacagtaattagtaatc 206
Query: 727 actctgtaccgagattagtagcacaatttgttgtcctggtttgaattttggaagatattt 786
||| | |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 207 actttctaccgagagtagtagcacaatttgttgtcctggtttgaattttgaaagatattt 266
Query: 787 ----gatgtcgtctccttattatctactcgttactggttgagcacgaaga 832
||| ||||| || ||||||||| ||||||||||||||| |||||
Sbjct: 267 gaaggatttcgtcgcc---ttatctactggttactggttgagcaagaaga 313
Score = 192 bits (97), Expect = 4e-047
Identities = 113/117 (96%), Gaps = 1/117 (0%)
Strand = Plus / Plus
Query: 535 ctttggcaaggctcctggagtgccgcacagccacaccaagccgtatgtgcgctccaaggg 594
|||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||
Sbjct: 9 ctttggcaaggctcctggcgtgccgcacagc-acaccaagccatatgtgcgctccaaggg 67
Query: 595 aaggaagttcgagaaggctcgtggcaggaggaacagccgtggattcaaggtttaaaa 651
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 aaggaagttcgaaaaggctcgtggcaggaggaacagccgtggattcaaggtttaaaa 124
>gb|AW923130.1|AW923130 DG1_49_C10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 231
Score = 194 bits (98), Expect = 1e-047
Identities = 116/122 (95%)
Strand = Plus / Plus
Query: 667 cgtgttgccatcagcatagtgcaaccgttgtgtttgatcagtcgacagtaattagtaatc 726
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 109 cgtgttgccatcagcatagtgcaaccgttctgtttgatcaatcgacagtaattagtaatc 168
Query: 727 actctgtaccgagattagtagcacaatttgttgtcctggtttgaattttggaagatattt 786
||| | |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 169 actttctaccgagagtagtagcacaatttgttgtcctggtttgaattttgaaagatattt 228
Query: 787 ga 788
||
Sbjct: 229 ga 230
Score = 155 bits (78), Expect = 8e-036
Identities = 84/86 (97%)
Strand = Plus / Plus
Query: 566 cacaccaagccgtatgtgcgctccaagggaaggaagttcgagaaggctcgtggcaggagg 625
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 cacaccaagccatatgtgcgctccaagggaaggaagttcgaaaaggctcgtggcaggagg 60
Query: 626 aacagccgtggattcaaggtttaaaa 651
||||||||||||||||||||||||||
Sbjct: 61 aacagccgtggattcaaggtttaaaa 86
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 236,651
Number of Sequences: 832831
Number of extensions: 236651
Number of successful extensions: 66873
Number of sequences better than 0.5: 70
Number of HSP's better than 0.5 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66690
Number of HSP's gapped (non-prelim): 144
length of query: 905
length of database: 491,359,669
effective HSP length: 20
effective length of query: 885
effective length of database: 474,703,049
effective search space: 420112198365
effective search space used: 420112198365
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)