BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440568.2.1
(1135 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX610479.1|CX610479 ANR1_19_B01.b1_A002 Anaerobic roots ... 1045 0.0
gb|CX606601.1|CX606601 ANR1_4_A06.b1_A002 Anaerobic roots S... 902 0.0
gb|CN123991.1|CN123991 RHOH1_2_A02.b1_A002 Acid- and alkali... 894 0.0
gb|BE594809.1|BE594809 PI1_45_G02.g1_A002 Pathogen induced ... 848 0.0
gb|BG558021.1|BG558021 RHIZ2_65_E12.g1_A003 Rhizome2 (RHIZ2... 654 0.0
gb|CX606690.1|CX606690 ANR1_4_A06.g1_A002 Anaerobic roots S... 595 e-168
gb|BG560778.1|BG560778 RHIZ2_64_E02.g1_A003 Rhizome2 (RHIZ2... 531 e-149
gb|CF072700.1|CF072700 FE1_25_A01.b1_A002 Iron-deficient se... 517 e-145
gb|CW290910.1|CW290910 104_770_11413271_116_35565_090 Sorgh... 381 e-103
gb|CL167685.1|CL167685 104_364_10810250_114_31802_314 Sorgh... 365 6e-099
gb|CW053496.1|CW053496 104_293_10515996_114_30185 Sorghum m... 365 6e-099
gb|CW396745.1|CW396745 fsbb001f085f09f0 Sorghum methylation... 365 6e-099
gb|CN146904.1|CN146904 WOUND1_44_D12.g1_A002 Wounded leaves... 355 6e-096
gb|CN131049.1|CN131049 RHOH1_45_B09.g1_A002 Acid- and alkal... 353 2e-095
gb|CN130966.1|CN130966 RHOH1_45_B09.b1_A002 Acid- and alkal... 349 4e-094
gb|CL167686.1|CL167686 104_364_10810250_116_31803_314 Sorgh... 299 3e-079
gb|CN146844.1|CN146844 WOUND1_44_D12.b1_A002 Wounded leaves... 299 3e-079
gb|CX615217.1|CX615217 GABR1_18_G08.g1_A002 GA- or brassino... 295 5e-078
gb|CW396746.1|CW396746 fsbb001f085f09k0 Sorghum methylation... 266 4e-069
gb|CD225972.1|CD225972 CCC1_42_F10.g1_A007 Callus culture/c... 264 2e-068
gb|CW053497.1|CW053497 104_293_10515996_115_30191 Sorghum m... 256 4e-066
gb|CD212998.1|CD212998 HS1_17_A06.g1_A012 Heat-shocked seed... 244 1e-062
gb|BG464514.1|BG464514 EM1_70_F10.g1_A002 Embryo 1 (EM1) So... 234 1e-059
gb|CB927000.1|CB927000 ABA1_11_D03.g1_A012 Abscisic acid-tr... 224 1e-056
gb|CW327927.1|CW327927 104_823_11479021_116_35975_049 Sorgh... 206 3e-051
gb|CD212893.1|CD212893 HS1_17_A06.b1_A012 Heat-shocked seed... 184 1e-044
gb|DN552573.1|DN552573 pSHR-RT-A-H2_D06_C108 pSHR Sorghum h... 178 7e-043
gb|BG464187.1|BG464187 EM1_70_F10.b1_A002 Embryo 1 (EM1) So... 159 7e-037
gb|BM322264.1|BM322264 PIC1_2_C09.b1_A002 Pathogen-infected... 159 7e-037
gb|CD225867.1|CD225867 CCC1_42_F10.b1_A007 Callus culture/c... 159 7e-037
gb|CW290911.1|CW290911 104_770_11413271_148_35561_090 Sorgh... 151 2e-034
gb|CN133297.1|CN133297 OX1_11_G11.b1_A002 Oxidatively-stres... 143 4e-032
gb|BG558591.1|BG558591 RHIZ2_57_G11.g1_A003 Rhizome2 (RHIZ2... 131 2e-028
gb|CW233098.1|CW233098 104_686_11213186_116_37372_013 Sorgh... 129 6e-028
gb|BE361844.1|BE361844 DG1_82_D07.g1_A002 Dark Grown 1 (DG1... 127 2e-027
gb|BE362004.1|BE362004 DG1_83_H02.g1_A002 Dark Grown 1 (DG1... 123 4e-026
gb|CD225595.1|CD225595 CCC1_40_E11.b1_A007 Callus culture/c... 123 4e-026
gb|CB926896.1|CB926896 ABA1_11_D03.b1_A012 Abscisic acid-tr... 115 9e-024
gb|CX610562.1|CX610562 ANR1_19_B01.g1_A002 Anaerobic roots ... 113 4e-023
gb|BG558883.1|BG558883 RHIZ2_57_G11.b1_A003 Rhizome2 (RHIZ2... 109 6e-022
gb|CF480277.1|CF480277 POL1_64_F10.g1_A002 Pollen Sorghum b... 103 4e-020
gb|CL163078.1|CL163078 104_356_10806878_116_31811_014 Sorgh... 101 1e-019
gb|BM324830.1|BM324830 PIC1_36_C07.b1_A002 Pathogen-infecte... 92 1e-016
gb|CL163077.1|CL163077 104_356_10806878_114_31810_014 Sorgh... 88 2e-015
gb|CW172212.1|CW172212 104_583_11156163_116_36533_010 Sorgh... 70 5e-010
gb|BM329325.1|BM329325 PIC1_36_C07.g1_A002 Pathogen-infecte... 66 8e-009
gb|CW194914.1|CW194914 104_618_11180356_116_36794_010 Sorgh... 64 3e-008
gb|CW883769.1|CW883769 Sorghum CISP Intron:I27_F07_F_SRSC5_... 64 3e-008
gb|CW263133.1|CW263133 104_731_11230489_116_35213_013 Sorgh... 60 5e-007
gb|CW263134.1|CW263134 104_731_11230489_148_35217_013 Sorgh... 60 5e-007
gb|BG558675.1|BG558675 RHIZ2_59_A01.g1_A003 Rhizome2 (RHIZ2... 60 5e-007
gb|CF481957.1|CF481957 POL1_75_H11.b1_A002 Pollen Sorghum b... 60 5e-007
gb|CF485047.1|CF485047 POL1_29_D04.b1_A002 Pollen Sorghum b... 60 5e-007
gb|BG557580.1|BG557580 EM1_53_D10.g1_A002 Embryo 1 (EM1) So... 58 2e-006
gb|CD221335.1|CD221335 CCC1_54_A12.b1_A007 Callus culture/c... 58 2e-006
gb|CD228190.1|CD228190 CCC1_6_C10.b1_A007 Callus culture/ce... 58 2e-006
gb|CF431549.1|CF431549 NIT1_8_C07.b1_A002 Nitrogen-deficien... 58 2e-006
gb|CF434095.1|CF434095 NIT1_32_F02.b1_A002 Nitrogen-deficie... 58 2e-006
gb|CF757290.1|CF757290 DSAF1_16_B06.g1_A011 Drought-stresse... 58 2e-006
gb|CF758266.1|CF758266 DSAF1_29_F01.g1_A011 Drought-stresse... 58 2e-006
gb|CF772010.1|CF772010 DSBF1_27_F10.g9_A010 Drought-stresse... 58 2e-006
gb|CN124953.1|CN124953 RHOH1_8_A09.b1_A002 Acid- and alkali... 58 2e-006
gb|CB925120.1|CB925120 ABA1_20_B03.b1_A012 Abscisic acid-tr... 56 7e-006
gb|CW041874.1|CW041874 104_275_10506805_114_30284 Sorghum m... 50 5e-004
gb|CW075061.1|CW075061 104_354_10806335_114_31830_239 Sorgh... 50 5e-004
gb|CW192987.1|CW192987 104_615_11179322_116_36776_005 Sorgh... 50 5e-004
gb|CW212258.1|CW212258 104_643_11190928_116_37021_058 Sorgh... 50 5e-004
gb|CW326584.1|CW326584 104_822_11478294_116_35968_031 Sorgh... 50 5e-004
gb|CW326585.1|CW326585 104_822_11478294_148_35969_031 Sorgh... 50 5e-004
gb|CW377086.1|CW377086 fsbb001f055e01f0 Sorghum methylation... 50 5e-004
gb|BG048974.1|BG048974 OV1_21_E10.g1_A002 Ovary 1 (OV1) Sor... 50 5e-004
gb|CN139776.1|CN139776 OX1_24_C03.b1_A002 Oxidatively-stres... 50 5e-004
gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete seq... 50 5e-004
gb|CL191722.1|CL191722 104_414_10939746_114_32246_079 Sorgh... 48 0.002
gb|BF586109.1|BF586109 FM1_26_G08.g1_A003 Floral-Induced Me... 48 0.002
gb|CX612733.1|CX612733 GABR1_4_D11.b1_A002 GA- or brassinol... 48 0.002
gb|CW188336.1|CW188336 104_608_11172975_116_36729_062 Sorgh... 46 0.007
gb|AW677426.1|AW677426 DG1_7_F10.b1_A002 Dark Grown 1 (DG1)... 46 0.007
gb|BE356278.1|BE356278 DG1_124_H12.b1_A002 Dark Grown 1 (DG... 46 0.007
gb|BE594565.1|BE594565 PI1_34_G09.b1_A002 Pathogen induced ... 46 0.007
gb|BE918959.1|BE918959 FM1_2_C11.b1_A003 Floral-Induced Mer... 46 0.007
gb|BI245910.1|BI245910 IP1_65_B03.b1_A002 Immature pannicle... 46 0.007
gb|CD210706.1|CD210706 HS1_49_C12.b1_A012 Heat-shocked seed... 46 0.007
gb|CW404275.1|CW404275 fsbb001f096f14k0 Sorghum methylation... 44 0.028
gb|CW418859.1|CW418859 fsbb001f123h16f0 Sorghum methylation... 44 0.028
gb|CF073018.1|CF073018 FE1_27_F08.b1_A002 Iron-deficient se... 44 0.028
gb|CN125034.1|CN125034 RHOH1_8_A09.g1_A002 Acid- and alkali... 44 0.028
gb|CN133377.1|CN133377 OX1_11_G11.g1_A002 Oxidatively-stres... 44 0.028
gb|CW056626.1|CW056626 104_298_10517783_115_30157 Sorghum m... 42 0.11
gb|CW201722.1|CW201722 104_627_11184717_116_37109_085 Sorgh... 42 0.11
gb|CW300453.1|CW300453 104_783_11463667_148_36246_066 Sorgh... 42 0.11
gb|CW305842.1|CW305842 104_791_11466522_116_36275_075 Sorgh... 42 0.11
gb|CW305843.1|CW305843 104_791_11466522_148_36276_075 Sorgh... 42 0.11
gb|CW307816.1|CW307816 104_796_11468341_148_35740_063 Sorgh... 42 0.11
gb|CW338377.1|CW338377 104_838_11484713_148_36127_069 Sorgh... 42 0.11
gb|CW421212.1|CW421212 fsbb001f128o20f0 Sorghum methylation... 42 0.11
gb|CW460643.1|CW460643 fsbb001f207o21f0 Sorghum methylation... 42 0.11
gb|CX612716.1|CX612716 GABR1_4_C04.b1_A002 GA- or brassinol... 42 0.11
gb|CL172315.1|CL172315 104_374_10890056_148_31774_344 Sorgh... 40 0.44
gb|CW022948.1|CW022948 104_162_10432152_1_30008 Sorghum met... 40 0.44
gb|CW074463.1|CW074463 104_348_10803808_116_31380_016 Sorgh... 40 0.44
gb|CW119721.1|CW119721 104_496_11108921_116_34638_067 Sorgh... 40 0.44
gb|CW176965.1|CW176965 104_590_11158767_116_36590_062 Sorgh... 40 0.44
gb|CW224625.1|CW224625 104_662_11203926_148_37201_031 Sorgh... 40 0.44
gb|CW326662.1|CW326662 104_822_11478336_148_35965_096 Sorgh... 40 0.44
gb|CW393659.1|CW393659 fsbb001f080n04f0 Sorghum methylation... 40 0.44
gb|CW414811.1|CW414811 fsbb001f114k10f0 Sorghum methylation... 40 0.44
gb|CW483933.1|CW483933 fsbb001f245n01k0 Sorghum methylation... 40 0.44
gb|CW488930.1|CW488930 fsbb001f265j07f0 Sorghum methylation... 40 0.44
gb|BF656751.1|BF656751 OV2_21_E03.g1_A002 Ovary 2 (OV2) Sor... 40 0.44
gb|BF657261.1|BF657261 OV2_22_F05.b1_A002 Ovary 2 (OV2) Sor... 40 0.44
gb|BG241227.1|BG241227 OV1_39_G03.b1_A002 Ovary 1 (OV1) Sor... 40 0.44
gb|BM324709.1|BM324709 PIC1_34_F03.b1_A002 Pathogen-infecte... 40 0.44
gb|CB924871.1|CB924871 ABA1_28_F09.g1_A012 Abscisic acid-tr... 40 0.44
gb|CB925185.1|CB925185 ABA1_20_H07.g1_A012 Abscisic acid-tr... 40 0.44
gb|CB927585.1|CB927585 ABA1_26_F08.g1_A012 Abscisic acid-tr... 40 0.44
gb|CB928833.1|CB928833 ABA1_24_D12.g1_A012 Abscisic acid-tr... 40 0.44
gb|CB929023.1|CB929023 ABA1_38_D06.g1_A012 Abscisic acid-tr... 40 0.44
gb|CB929031.1|CB929031 ABA1_38_A12.g1_A012 Abscisic acid-tr... 40 0.44
gb|CB929315.1|CB929315 ABA1_41_F07.g1_A012 Abscisic acid-tr... 40 0.44
gb|CD207447.1|CD207447 HS1_65_D09.g1_A012 Heat-shocked seed... 40 0.44
gb|CD210802.1|CD210802 HS1_49_C12.g1_A012 Heat-shocked seed... 40 0.44
gb|CD212303.1|CD212303 HS1_30_H06.g1_A012 Heat-shocked seed... 40 0.44
gb|CD212954.1|CD212954 HS1_17_G02.g1_A012 Heat-shocked seed... 40 0.44
gb|CD230691.1|CD230691 SS1_47_D09.g1_A012 Salt-stressed see... 40 0.44
gb|CD232597.1|CD232597 SS1_46_D04.g1_A012 Salt-stressed see... 40 0.44
gb|CF070588.1|CF070588 FE1_1_C06.b1_A002 Iron-deficient see... 40 0.44
gb|CN128768.1|CN128768 RHOH1_31_B02.g1_A002 Acid- and alkal... 40 0.44
gb|CN135637.1|CN135637 OX1_38_C08.b1_A002 Oxidatively-stres... 40 0.44
gb|CN137667.1|CN137667 OX1_58_F09.g1_A002 Oxidatively-stres... 40 0.44
gb|CX616707.1|CX616707 GABR1_29_B01.g1_A002 GA- or brassino... 40 0.44
gb|CX621886.1|CX621886 GABR1_60_F06.g1_A002 GA- or brassino... 40 0.44
gb|CX622256.1|CX622256 GABR1_62_H06.g2_A002 GA- or brassino... 40 0.44
gb|AC169370.3| Sorghum bicolor clone SB_BBc0011I20, WORKING... 40 0.44
>gb|CX610479.1|CX610479 ANR1_19_B01.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_19_B01_A002 3', mRNA sequence
Length = 789
Score = 1045 bits (527), Expect = 0.0
Identities = 734/800 (91%), Gaps = 16/800 (2%)
Strand = Plus / Minus
Query: 40 gcaccaatagaaagaatcaaatactgtgggg-atacaagaatcttgtttacagctcaggg 98
||||| ||||||||||||||||| ||||||| ||||| |||||||||||||| |||||||
Sbjct: 789 gcaccgatagaaagaatcaaatattgtgggggataca-gaatcttgtttacaactcaggg 731
Query: 99 gaagaataatcacagacattacacgctgccagccacatgtccgcaacaacgacatcgacg 158
|||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 730 gaagaataatcacaaatgttacacgctgccagccacatgtccgcaagaacgacatcgacg 671
Query: 159 agtcatataccttac----ctatcatacaagaacaagaggagggagagaagcaaacgcaa 214
| ||||||| ||||| |||||||||||| || | |||||||||||||
Sbjct: 670 actcatatatcttacttatctatcatacaag----aggcgggggagagaagcaa------ 621
Query: 215 agcttatgacccagcatgttctccagggttagtcgcccgcgcatgcgcattcagcagggg 274
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 620 agcttatgacccagcattttctcctgggttagtcgcccgcgcatgcgcattcagcagggg 561
Query: 275 ttgtagcgccttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacaca 334
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 560 ttgtagcgccttgacaacaatgctcatgtttggccggaagtctgcttcgtattgaacaca 501
Query: 335 caaggcggcgacagccgcaaacttcgcaacagctttaggaggatagtcccctccaagtct 394
||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 500 caaggcggcaacagctgcaaactttgcaacagctttcggaggatagtcccctccaagtct 441
Query: 395 tgagtcaacacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaag 454
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 440 tgagtcaacacattgtctaaccttgtcttcgctaagtcttggtgtagcccaagtcacaag 381
Query: 455 actctgctgtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaag 514
|||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 380 actctgctgtccccttggtaatgtatggtcgacaggtttccttccagtcaatagctcaag 321
Query: 515 aagaacaaccccaaaactatatacatcactcttagagctgagttgcccagtcatcgcata 574
||||||||| || |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 320 aagaacaactccgaaactatatacatcgctcttagagctgagttgcccagtcattgcata 261
Query: 575 ctcaggcgcatggtatccgaatgttccgagaaccctagttgagtgaagccgagctgccat 634
|||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 260 ctcaggagcatgatatccgaaagttccaagaaccctagttgagtgaagccgagctgccat 201
Query: 635 gtcaggagcttggttcgacagatcaaagtcagcgatcttagctacatcgtcatcgaaaag 694
||||||||||||||| |||| |||||||||||| |||||||||||||| ||||| |||||
Sbjct: 200 gtcaggagcttggtttgacaaatcaaagtcagctatcttagctacatcatcatcaaaaag 141
Query: 695 aaggacgttgctagacttgatgtctcggtgtatgatatggggctgcgctttctcatgaag 754
||| || ||||||||||| || |||| ||||||||||||||| || ||||||||||||||
Sbjct: 140 aagaacattgctagacttaatatctctgtgtatgatatggggttgtgctttctcatgaag 81
Query: 755 atactcgaggcctttcgctgccccaaccgctatcttcacacgttgcgaccacgataagac 814
||||||||||||||| |||||||| || ||||||||||||||||| ||||| ||||||||
Sbjct: 80 atactcgaggccttttgctgcccccacagctatcttcacacgttgtgaccatgataagac 21
Query: 815 tggaccgggttgagcccctt 834
||||||||||||||||||||
Sbjct: 20 tggaccgggttgagcccctt 1
>gb|CX606601.1|CX606601 ANR1_4_A06.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_4_A06_A002 3', mRNA sequence
Length = 791
Score = 902 bits (455), Expect = 0.0
Identities = 631/688 (91%), Gaps = 15/688 (2%)
Strand = Plus / Minus
Query: 46 atagaaagaatcaaatactgtgggg-atacaagaatcttgtttacagctcaggggaagaa 104
||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 678 atagaaagaatcaaatattgtgggggatacaagaatcttgtttacaactcaggggaagaa 619
Query: 105 taatcacagacattacacgctgccagccacatgtccgcaacaacgacatcgacgagtcat 164
|||||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 618 taatcacaaatgttacacgctgccagccacatgtccgcaagaacgacatcgacgactcat 559
Query: 165 ataccttac----ctatcatacaagaacaagaggagggagagaagcaaacgcaaagctta 220
||| ||||| |||||||||||| || | ||||||||||||| ||||||
Sbjct: 558 atatcttacttatctatcatacaag----aggcgggggagagaagcaa------agctta 509
Query: 221 tgacccagcatgttctccagggttagtcgcccgcgcatgcgcattcagcaggggttgtag 280
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tgacccagcattttctcctgggttagtcgcccgcgcatgcgcattcagcaggggttgtag 449
Query: 281 cgccttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggc 340
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 448 cgccttgacaacaatgctcatgtttggccggaagtctgcttcgtattgaacacacaaggc 389
Query: 341 ggcgacagccgcaaacttcgcaacagctttaggaggatagtcccctccaagtcttgagtc 400
||| ||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 388 ggcaacagctgcaaactttgcaacagctttcggaggatagtcccctccaagtcttgagtc 329
Query: 401 aacacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactctg 460
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 328 aacacattgtctaaccttgtcttcgctaagtcttggtgtagcccaagtcacaagactctg 269
Query: 461 ctgtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaac 520
|||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 268 ctgtccccttggtaatgtatggtcgacaggtttccttccagtcaatagctcaagaagaac 209
Query: 521 aaccccaaaactatatacatcactcttagagctgagttgcccagtcatcgcatactcagg 580
||| || |||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 208 aactccgaaactatatacatcgctcttagagctgagttgcccagtcattgcatactcagg 149
Query: 581 cgcatggtatccgaatgttccgagaaccctagttgagtgaagccgagctgccatgtcagg 640
||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 148 agcatgatatccgaaagttccaagaaccctagttgagtgaagccgagctgccatgtcagg 89
Query: 641 agcttggttcgacagatcaaagtcagcgatcttagctacatcgtcatcgaaaagaaggac 700
||||||||| |||| |||||||||||| |||||||||||||| ||||| |||||||| ||
Sbjct: 88 agcttggtttgacaaatcaaagtcagctatcttagctacatcatcatcaaaaagaagaac 29
Query: 701 gttgctagacttgatgtctcggtgtatg 728
||||||||||| || |||| |||||||
Sbjct: 28 attgctagacttaatatctctgtgtatg 1
>gb|CN123991.1|CN123991 RHOH1_2_A02.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_2_A02_A002 3', mRNA sequence
Length = 701
Score = 894 bits (451), Expect = 0.0
Identities = 618/672 (91%), Gaps = 15/672 (2%)
Strand = Plus / Minus
Query: 46 atagaaagaatcaaatactgtgggg-atacaagaatcttgtttacagctcaggggaagaa 104
||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 672 atagaaagaatcaaatattgtgggggatacaagaatcttgtttacaactcaggggaagaa 613
Query: 105 taatcacagacattacacgctgccagccacatgtccgcaacaacgacatcgacgagtcat 164
|||||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 612 taatcacaaatgttacacgctgccagccacatgtccgcaagaacgacatcgacgactcat 553
Query: 165 ataccttac----ctatcatacaagaacaagaggagggagagaagcaaacgcaaagctta 220
||| ||||| |||||||||||| || | ||||||||||||| ||||||
Sbjct: 552 atatcttacttatctatcatacaag----aggcgggggagagaagcaa------agctta 503
Query: 221 tgacccagcatgttctccagggttagtcgcccgcgcatgcgcattcagcaggggttgtag 280
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgacccagcattttctcctgggttagtcgcccgcgcatgcgcattcagcaggggttgtag 443
Query: 281 cgccttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggc 340
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 442 cgccttgacaacaatgctcatgtttggccggaagtctgcttcgtattgaacacacaaggc 383
Query: 341 ggcgacagccgcaaacttcgcaacagctttaggaggatagtcccctccaagtcttgagtc 400
||| ||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 382 ggcaacagctgcaaactttgcaacagctttcggaggatagtcccctccaagtcttgagtc 323
Query: 401 aacacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactctg 460
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 322 aacacattgtctaaccttgtcttcgctaagtcttggtgtagcccaagtcacaagactctg 263
Query: 461 ctgtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaagaac 520
|||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 262 ctgtccccttggtaatgtatggtcgacaggtttccttccagtcaatagctcaagaagaac 203
Query: 521 aaccccaaaactatatacatcactcttagagctgagttgcccagtcatcgcatactcagg 580
||| || |||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 202 aactccgaaactatatacatcgctcttagagctgagttgcccagtcattgcatactcagg 143
Query: 581 cgcatggtatccgaatgttccgagaaccctagttgagtgaagccgagctgccatgtcagg 640
||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 142 agcatgatatccgaaagttccaagaaccctagttgagtgaagccgagctgccatgtcagg 83
Query: 641 agcttggttcgacagatcaaagtcagcgatcttagctacatcgtcatcgaaaagaaggac 700
||||||||| |||| |||||||||||| |||||||||||||| ||||| |||||||| ||
Sbjct: 82 agcttggtttgacaaatcaaagtcagctatcttagctacatcatcatcaaaaagaagaac 23
Query: 701 gttgctagactt 712
|||||||||||
Sbjct: 22 attgctagactt 11
>gb|BE594809.1|BE594809 PI1_45_G02.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 661
Score = 848 bits (428), Expect = 0.0
Identities = 607/665 (91%), Gaps = 15/665 (2%)
Strand = Plus / Minus
Query: 67 ggggatacaagaatcttgtttacagctcagggg-aagaataatcacagacattacacgct 125
|||||||||| ||||||||||||| |||||||| ||||||||||||| | |||||||||
Sbjct: 655 ggggatacaataatcttgtttacaactcaggggtaagaataatcacaaatgttacacgct 596
Query: 126 gccagccacatgtccgcaacaacgacatcgacgagtcatataccttac----ctatcata 181
||||||||||||||||||| |||||||||||||| ||||||| ||||| ||||||||
Sbjct: 595 gccagccacatgtccgcaagaacgacatcgacgactcatatatcttacttatctatcata 536
Query: 182 caagaacaagaggagggagagaagcaaacgcaaagcttatgacccagcatgttctccagg 241
|||| || | ||||||||||||| ||||||||||||||||| |||||| ||
Sbjct: 535 caag----aggcgggggagagaagcaa------agcttatgacccagcattttctcctgg 486
Query: 242 gttagtcgcccgcgcatgcgcattcagcaggggttgtagcgccttgacaacaatgctcat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gttagtcgcccgcgcatgcgcattcagcaggggttgtagcgccttgacaacaatgctcat 426
Query: 302 gttcggccggaagtccgcttcgtattgaacacacaaggcggcgacagccgcaaacttcgc 361
||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct: 425 gtttggccggaagtctgcttcgtattgaacacacaaggcggcaacagctgcaaactttgc 366
Query: 362 aacagctttaggaggatagtcccctccaagtcttgagtcaacacactgtctaaccttgtc 421
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 365 aacagctttcggaggatagtcccctccaagtcttgagtcaacacattgtctaaccttgtc 306
Query: 422 ttcgctaagtcttggtgtagcccaggtcacaagactctgctgtccccttggcaatgtatg 481
|||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct: 305 ttcgctaagtcttggtgtagcccaagtcacaagactctggtgtccccttggtaatgtatg 246
Query: 482 gtcgacaggtttcctcccagtcaacagctcaagaagaacaaccccaaaactatatacatc 541
||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||
Sbjct: 245 gtcgacaggtttccttccagtcaatagctcaagaagaacaactccgaaactatatacatc 186
Query: 542 actcttagagctgagttgcccagtcatcgcatactcaggcgcatggtatccgaatgttcc 601
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct: 185 gctcttagagctgagttgcccagtcattgcatactcaggagcatgatatccgaaagttcc 126
Query: 602 gagaaccctagttgagtgaagccgagctgccatgtcaggagcttggttcgacagatcaaa 661
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 125 aagaaccctagttgagtgaagccgagctgccatgtcaggagcttggtttgacaaatcaaa 66
Query: 662 gtcagcgatcttagctacatcgtcatcgaaaagaaggacgttgctagacttgatgtctcg 721
|||||| |||||||||||||| ||||| |||||||| || ||||||||||| || ||||
Sbjct: 65 gtcagctatcttagctacatcatcatcaaaaagaagaacattgctagacttaatatctct 6
Query: 722 gtgta 726
|||||
Sbjct: 5 gtgta 1
>gb|BG558021.1|BG558021 RHIZ2_65_E12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 501
Score = 654 bits (330), Expect = 0.0
Identities = 465/508 (91%), Gaps = 9/508 (1%)
Strand = Plus / Minus
Query: 80 tcttgtttacagctcagggg-aagaataatcacagacattacacgctgccagccacatgt 138
||||||||||| |||||||| || |||||||||| | ||||||||||||||||||||||
Sbjct: 501 tcttgtttacaactcagggggaaaaataatcacaaatgttacacgctgccagccacatgt 442
Query: 139 ccgcaacaacgacatcgacgagtcatataccttacctatcatacaagaacaagaggaggg 198
|||||| |||||||||||||| ||||||| ||||| |||| || |||||||| |||
Sbjct: 441 ccgcaagaacgacatcgacgactcatatatcttacttatctatcat--acaagaggcggg 384
Query: 199 agagaagcaaacgcaaagcttatgacccagcatgttctccagggttagtcgcccgcgcat 258
|||||||| || |||||||||||||||| |||||| |||||||| ||||||||||
Sbjct: 383 agagaagcgaa------gcttatgacccagcattttctcctgggttagtagcccgcgcat 330
Query: 259 gcgcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccg 318
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 329 gcgcattcagcaggggttgtagcgccttgacaacaatgctcatgtttggccggaagtctg 270
Query: 319 cttcgtattgaacacacaaggcggcgacagccgcaaacttcgcaacagctttaggaggat 378
||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||
Sbjct: 269 cttcgtattgaacacacaaggcggcaacagctgcaaactttgcaacagctttcggaggat 210
Query: 379 agtcccctccaagtcttgagtcaacacactgtctaaccttgtcttcgctaagtcttggtg 438
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 209 agtcccctccaagtcttgagtcaacacattgtctaaccttgtcttcgctaagtcttggtg 150
Query: 439 tagcccaggtcacaagactctgctgtccccttggcaatgtatggtcgacaggtttcctcc 498
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 149 tagcccaagtcacaagactctgctgtccccttggtaatgtatggtcgacaggtttccttc 90
Query: 499 cagtcaacagctcaagaagaacaaccccaaaactatatacatcactcttagagctgagtt 558
||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct: 89 cagtcaatagctcaagaagaacaactccgaaactatatacatcgctcttagagctgagtt 30
Query: 559 gcccagtcatcgcatactcaggcgcatg 586
|||||||||| ||||||||||| |||||
Sbjct: 29 gcccagtcattgcatactcaggagcatg 2
>gb|CX606690.1|CX606690 ANR1_4_A06.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_4_A06_A002 5', mRNA sequence
Length = 855
Score = 595 bits (300), Expect = e-168
Identities = 369/392 (94%)
Strand = Plus / Minus
Query: 741 gctttctcatgaagatactcgaggcctttcgctgccccaaccgctatcttcacacgttgc 800
||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct: 853 gctttctcatgaagatactcgaggccttttgctgcccccacagctatcttcacacgttgt 794
Query: 801 gaccacgataagactggaccgggttgagcccctttaacccctttccttccatgaagcata 860
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 793 gaccatgataagactggaccgggttgagcccctttaacacctttccttccatgaagcata 734
Query: 861 tcatgaagggaacccattgtagcgaactcataagcaaggacgcggagtgtcccatcagca 920
|||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 733 tcatgaagagaacccatagtagcaaactcataagcaaggacgcggagtgtcccatcggca 674
Query: 921 cagtaaccaagcaactcgacaacattttcatgcttcagccttgacaccatagacacctgg 980
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 673 cagtaaccaagcaactcaacaacattttcatgcttcagccttgataccatagacacctgc 614
Query: 981 gccaagaactcttggtctggctgcttgttagaatccaactttttgaccgcggcactccta 1040
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 613 gccaagaattcttggtctggctgcttattagaatccaactttttgaccgcggcgctccta 554
Query: 1041 ccatttcttagaacacccaagtatactctgccaaaggatccctcaccaatcaaagcttca 1100
|||||||| | |||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 553 ccatttctcaaaacaccgaagtatactctgccaaaggagccctcaccaatcaaggcttca 494
Query: 1101 tcaccaaaacccttggtcacctccctaatctc 1132
|||||||||||||| |||||||||| ||||||
Sbjct: 493 tcaccaaaacccttagtcacctcccgaatctc 462
>gb|BG560778.1|BG560778 RHIZ2_64_E02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 439
Score = 531 bits (268), Expect = e-149
Identities = 382/418 (91%), Gaps = 9/418 (2%)
Strand = Plus / Minus
Query: 46 atagaaagaatcaaatactgtgggg-atacaagaatcttgtttacagctcaggggaagaa 104
||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 410 atagaaagaatcaaatattgtgggggatacaagaatcttgtttacaactcaggggaagaa 351
Query: 105 taatcacagacattacacgctgccagccacatgtccgcaacaacgacatcgacgagtcat 164
|||||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 350 taatcacaaatgttacacgctgccagccacatgtccgcaagaacgacatcgacgactcat 291
Query: 165 ataccttacctatcatacaagaacaagaggagggagagaagcaaacgcaaagcttatgac 224
||| ||||| |||| || |||||||| ||||||||||| || |||||||||
Sbjct: 290 atatcttacttatctatcat--acaagaggcgggagagaagcgaa------gcttatgac 239
Query: 225 ccagcatgttctccagggttagtcgcccgcgcatgcgcattcagcaggggttgtagcgcc 284
||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 238 ccagcattttctcctgggttagtagcccgcgcatgcgcattcagcaggggttgtagcgcc 179
Query: 285 ttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggcggcg 344
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 178 ttgacaacaatgctcatgtttggccggaagtctgcttcgtattgaacacacaaggcggca 119
Query: 345 acagccgcaaacttcgcaacagctttaggaggatagtcccctccaagtcttgagtcaaca 404
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 118 acagctgcaaactttgcaacagctttcggaggatagtcccctccaagtcttgagtcaaca 59
Query: 405 cactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactctgct 462
|| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 58 cattgtctaaccttgtcttccctaagtcttggtgtagcccaagtcacaagactctgct 1
>gb|CF072700.1|CF072700 FE1_25_A01.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_25_A01_A002 3', mRNA sequence
Length = 546
Score = 517 bits (261), Expect = e-145
Identities = 300/313 (95%)
Strand = Plus / Minus
Query: 211 gcaaagcttatgacccagcatgttctccagggttagtcgcccgcgcatgcgcattcagca 270
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 314 gcaaagcttatgacccagcattttctcctgggttagtcgcccgcgcatgcgcattcagca 255
Query: 271 ggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaa 330
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 254 ggggttgtagcgccttgacaacaatgctcatgtttggccggaagtctgcttcgtattgaa 195
Query: 331 cacacaaggcggcgacagccgcaaacttcgcaacagctttaggaggatagtcccctccaa 390
||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct: 194 cacacaaggcggcaacagctgcaaactttgcaacagctttcggaggatagtcccctccaa 135
Query: 391 gtcttgagtcaacacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtca 450
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 134 gtcttgagtcaacacattgtctaaccttgtcttcgctaagtcttggtgtagcccaagtca 75
Query: 451 caagactctgctgtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagct 510
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct: 74 caagactctgctgtccccttggtaatgtatggtcgacaggtttccttccagtcaatagct 15
Query: 511 caagaagaacaac 523
|||||||||||||
Sbjct: 14 caagaagaacaac 2
Score = 178 bits (90), Expect = 7e-043
Identities = 124/134 (92%), Gaps = 1/134 (0%)
Strand = Plus / Minus
Query: 46 atagaaagaatcaaatactgtgggg-atacaagaatcttgtttacagctcaggggaagaa 104
||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 474 atagaaagaatcaaatattgtgggggatacaagaatcttgtttacaactcaggggaagaa 415
Query: 105 taatcacagacattacacgctgccagccacatgtccgcaacaacgacatcgacgagtcat 164
|||||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 414 taatcacaaatgttacacgctgccagccacatgtccgcaagaacgacatcgacgactcat 355
Query: 165 ataccttacctatc 178
||| ||||| ||||
Sbjct: 354 atatcttacttatc 341
>gb|CW290910.1|CW290910 104_770_11413271_116_35565_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11413271, DNA
sequence
Length = 564
Score = 381 bits (192), Expect = e-103
Identities = 258/280 (92%)
Strand = Plus / Minus
Query: 571 catactcaggcgcatggtatccgaatgttccgagaaccctagttgagtgaagccgagctg 630
|||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 288 catactcaggagcatgatatccgaaagttccaagaaccctagttgagtgaagccgagctg 229
Query: 631 ccatgtcaggagcttggttcgacagatcaaagtcagcgatcttagctacatcgtcatcga 690
||||||||||||||||||| |||| |||||||||||| |||||||||||||| ||||| |
Sbjct: 228 ccatgtcaggagcttggtttgacaaatcaaagtcagctatcttagctacatcatcatcaa 169
Query: 691 aaagaaggacgttgctagacttgatgtctcggtgtatgatatggggctgcgctttctcat 750
||||||| || ||||||||||| || |||| ||||||||||||||| || ||||||||||
Sbjct: 168 aaagaagaacattgctagacttaatatctctgtgtatgatatggggttgtgctttctcat 109
Query: 751 gaagatactcgaggcctttcgctgccccaaccgctatcttcacacgttgcgaccacgata 810
||||||||||||||||||| |||||||| || ||||||||||||||||| ||||| ||||
Sbjct: 108 gaagatactcgaggccttttgctgcccccacagctatcttcacacgttgtgaccatgata 49
Query: 811 agactggaccgggttgagcccctttaacccctttccttcc 850
|||||||||||||||||||||||||||| |||||||||||
Sbjct: 48 agactggaccgggttgagcccctttaacacctttccttcc 9
Score = 200 bits (101), Expect = 2e-049
Identities = 122/129 (94%)
Strand = Plus / Minus
Query: 447 gtcacaagactctgctgtccccttggcaatgtatggtcgacaggtttcctcccagtcaac 506
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 497 gtcacaagactctgctgtccccttggtaatgtatggtcgacaggtttccttccagtcaat 438
Query: 507 agctcaagaagaacaaccccaaaactatatacatcactcttagagctgagttgcccagtc 566
||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct: 437 agctcaagaagaacaactccgaaactatatacatcgctcttagagctgagttgcccagtc 378
Query: 567 atcgcatac 575
|| ||||||
Sbjct: 377 attgcatac 369
>gb|CL167685.1|CL167685 104_364_10810250_114_31802_314 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810250, DNA
sequence
Length = 717
Score = 365 bits (184), Expect = 6e-099
Identities = 285/317 (89%), Gaps = 15/317 (4%)
Strand = Plus / Minus
Query: 46 atagaaagaatcaaatactgtgggg-atacaagaatcttgtttacagctcaggggaagaa 104
||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 337 atagaaagaatcaaatattgtgggggatacaagaatcttgtttacaactcaggggaagaa 278
Query: 105 taatcacagacattacacgctgccagccacatgtccgcaacaacgacatcgacgagtcat 164
|||||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 277 taatcacaaatgttacacgctgccagccacatgtccgcaagaacgacatcgacgactcat 218
Query: 165 ataccttac----ctatcatacaagaacaagaggagggagagaagcaaacgcaaagctta 220
||| ||||| |||||||||||| || | ||||||||||||| ||||||
Sbjct: 217 atatcttacttatctatcatacaag----aggcgggggagagaagcaa------agctta 168
Query: 221 tgacccagcatgttctccagggttagtcgcccgcgcatgcgcattcagcaggggttgtag 280
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tgacccagcattttctcctgggttagtcgcccgcgcatgcgcattcagcaggggttgtag 108
Query: 281 cgccttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggc 340
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 107 cgccttgacaacaatgctcatgtttggccggaagtctgcttcgtattgaacacacaaggc 48
Query: 341 ggcgacagccgcaaact 357
||| ||||| |||||||
Sbjct: 47 ggcaacagctgcaaact 31
>gb|CW053496.1|CW053496 104_293_10515996_114_30185 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515996, DNA
sequence
Length = 685
Score = 365 bits (184), Expect = 6e-099
Identities = 285/317 (89%), Gaps = 15/317 (4%)
Strand = Plus / Plus
Query: 46 atagaaagaatcaaatactgtgggg-atacaagaatcttgtttacagctcaggggaagaa 104
||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 243 atagaaagaatcaaatattgtgggggatacaagaatcttgtttacaactcaggggaagaa 302
Query: 105 taatcacagacattacacgctgccagccacatgtccgcaacaacgacatcgacgagtcat 164
|||||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 303 taatcacaaatgttacacgctgccagccacatgtccgcaagaacgacatcgacgactcat 362
Query: 165 ataccttac----ctatcatacaagaacaagaggagggagagaagcaaacgcaaagctta 220
||| ||||| |||||||||||| || | ||||||||||||| ||||||
Sbjct: 363 atatcttacttatctatcatacaag----aggcgggggagagaagcaa------agctta 412
Query: 221 tgacccagcatgttctccagggttagtcgcccgcgcatgcgcattcagcaggggttgtag 280
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgacccagcattttctcctgggttagtcgcccgcgcatgcgcattcagcaggggttgtag 472
Query: 281 cgccttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggc 340
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 473 cgccttgacaacaatgctcatgtttggccggaagtctgcttcgtattgaacacacaaggc 532
Query: 341 ggcgacagccgcaaact 357
||| ||||| |||||||
Sbjct: 533 ggcaacagctgcaaact 549
>gb|CW396745.1|CW396745 fsbb001f085f09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f085f09, DNA
sequence
Length = 672
Score = 365 bits (184), Expect = 6e-099
Identities = 285/317 (89%), Gaps = 15/317 (4%)
Strand = Plus / Plus
Query: 46 atagaaagaatcaaatactgtgggg-atacaagaatcttgtttacagctcaggggaagaa 104
||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 207 atagaaagaatcaaatattgtgggggatacaagaatcttgtttacaactcaggggaagaa 266
Query: 105 taatcacagacattacacgctgccagccacatgtccgcaacaacgacatcgacgagtcat 164
|||||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 267 taatcacaaatgttacacgctgccagccacatgtccgcaagaacgacatcgacgactcat 326
Query: 165 ataccttac----ctatcatacaagaacaagaggagggagagaagcaaacgcaaagctta 220
||| ||||| |||||||||||| || | ||||||||||||| ||||||
Sbjct: 327 atatcttacttatctatcatacaag----aggcgggggagagaagcaa------agctta 376
Query: 221 tgacccagcatgttctccagggttagtcgcccgcgcatgcgcattcagcaggggttgtag 280
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgacccagcattttctcctgggttagtcgcccgcgcatgcgcattcagcaggggttgtag 436
Query: 281 cgccttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaacacacaaggc 340
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 437 cgccttgacaacaatgctcatgtttggccggaagtctgcttcgtattgaacacacaaggc 496
Query: 341 ggcgacagccgcaaact 357
||| ||||| |||||||
Sbjct: 497 ggcaacagctgcaaact 513
>gb|CN146904.1|CN146904 WOUND1_44_D12.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_44_D12_A002 5', mRNA sequence
Length = 755
Score = 355 bits (179), Expect = 6e-096
Identities = 403/475 (84%), Gaps = 2/475 (0%)
Strand = Plus / Minus
Query: 656 atcaaagtcagcgatcttagctacatcgtcatcgaaaagaaggacgttgctagacttgat 715
|||||| ||||| || || | |||||| | ||| || ||||| || ||||| ||||| ||
Sbjct: 755 atcaaaatcagctattttggatacatcattatcaaatagaagaacattgctggactttat 696
Query: 716 gtctcggtgtatgatatggggctgcgctttctcatgaagatactcgaggcctttcgctgc 775
||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 695 gtccttgtgtatgatatgaggctgcgctttctcatgaagatactcgaggccttttgctgc 636
Query: 776 cccaaccgctatcttcacacgttgcgaccacgataagactggaccgggttgagccccttt 835
||||| || |||||||| ||||| ||| || ||||||||||| || ||||| |||||
Sbjct: 635 tccaacagcaatcttcactcgttgtatccaggacaagactggaccaggctgagctccttt 576
Query: 836 aacccctttccttccatgaagcatatcatgaagggaacccattgtagcgaactcataagc 895
|| ||||| | ||||||||||||||| ||||| |||||||| ||||| || ||||||||
Sbjct: 575 cacacctttgcgtccatgaagcatatcgtgaagagaacccatagtagcaaattcataagc 516
Query: 896 aaggacgcggagtgt-cccatcagcacagtaaccaagcaactcgacaacattttcatgct 954
||||| |||| |||| ||||||| ||||||||||||||||||| || ||||| |||||||
Sbjct: 515 aaggatgcgg-gtgttcccatcaacacagtaaccaagcaactctacgacattgtcatgct 457
Query: 955 tcagccttgacaccatagacacctgggccaagaactcttggtctggctgcttgttagaat 1014
| |||||||||||||| || ||||| || || |||||||| |||||||||||| | ||||
Sbjct: 456 taagccttgacaccatggagacctgtgctaaaaactcttgctctggctgcttgcttgaat 397
Query: 1015 ccaactttttgaccgcggcactcctaccatttcttagaacacccaagtatactctgccaa 1074
| |||||||| | ||| ||||||||||||||| ||| ||||| || |||||||||||||
Sbjct: 396 ctaacttttttatcgcagcactcctaccattttctagtacaccaaaatatactctgccaa 337
Query: 1075 aggatccctcaccaatcaaagcttcatcaccaaaacccttggtcacctccctaat 1129
| || ||||| ||||||||||||||||| |||||| |||| || ||||| |||||
Sbjct: 336 aagacccctcgccaatcaaagcttcatcgccaaaagcctttgtgacctctctaat 282
>gb|CN131049.1|CN131049 RHOH1_45_B09.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_45_B09_A002 5', mRNA sequence
Length = 785
Score = 353 bits (178), Expect = 2e-095
Identities = 375/438 (85%), Gaps = 2/438 (0%)
Strand = Plus / Minus
Query: 693 agaaggacgttgctagacttgatgtctcggtgtatgatatggggctgcgctttctcatga 752
||||| || ||||| ||||| ||||| | |||||||||||| ||||||||||||||||||
Sbjct: 752 agaagaacattgctggactttatgtccctgtgtatgatatgaggctgcgctttctcatga 693
Query: 753 agatactcgaggcctttcgctgccccaaccgctatcttcacacgttgcgaccacgataag 812
||||||||||||||||| ||||| ||||| || |||||||| ||||| ||| || |||
Sbjct: 692 agatactcgaggccttttgctgctccaacagcaatcttcactcgttgtatccaggacaag 633
Query: 813 actggaccgggttgagcccctttaacccctttccttccatgaagcatatcatgaagggaa 872
|||||||| || ||||| ||||| || ||||| | ||||||||||||||| ||||| |||
Sbjct: 632 actggaccaggctgagctcctttcacacctttgcgtccatgaagcatatcgtgaagagaa 573
Query: 873 cccattgtagcgaactcataagcaaggacgcggagtgt-cccatcagcacagtaaccaag 931
||||| ||||| || ||||||||||||| |||| |||| ||||||| |||||||||||||
Sbjct: 572 cccatagtagcaaattcataagcaaggatgcgg-gtgttcccatcaacacagtaaccaag 514
Query: 932 caactcgacaacattttcatgcttcagccttgacaccatagacacctgggccaagaactc 991
|||||| | ||||| |||||||| |||||||||||||| || ||||| || || |||||
Sbjct: 513 caactctatgacattgtcatgcttaagccttgacaccatggagacctgtgctaaaaactc 454
Query: 992 ttggtctggctgcttgttagaatccaactttttgaccgcggcactcctaccatttcttag 1051
||| |||||||||||| | ||||| |||||||| | ||| ||||||||||||||| |||
Sbjct: 453 ttgctctggctgcttgcttgaatctaacttttttatcgcagcactcctaccattttctag 394
Query: 1052 aacacccaagtatactctgccaaaggatccctcaccaatcaaagcttcatcaccaaaacc 1111
||||| || |||||||||||||| || ||||| ||||||||||||||||| |||||| |
Sbjct: 393 tacaccaaaatatactctgccaaaagacccctcgccaatcaaagcttcatcgccaaaagc 334
Query: 1112 cttggtcacctccctaat 1129
||| || ||||| |||||
Sbjct: 333 ctttgtgacctctctaat 316
>gb|CN130966.1|CN130966 RHOH1_45_B09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_45_B09_A002 3', mRNA sequence
Length = 730
Score = 349 bits (176), Expect = 4e-094
Identities = 413/492 (83%)
Strand = Plus / Minus
Query: 261 gcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccgct 320
|||||||||||||| || |||||||| || || ||||||||||| || || ||||| |||
Sbjct: 492 gcattcagcaggggctggagcgccttcaccacgatgctcatgtttggtcgaaagtcagct 433
Query: 321 tcgtattgaacacacaaggcggcgacagccgcaaacttcgcaacagctttaggaggatag 380
|| ||||| ||||| | || || ||||| |||||||| ||||||| ||||||||||||
Sbjct: 432 tcatattgcacacagagtgcagcaacagctgcaaactttgcaacagatttaggaggatat 373
Query: 381 tcccctccaagtcttgagtcaacacactgtctaaccttgtcttcgctaagtcttggtgta 440
|| |||||||||||||| |||||||| || ||||| || ||||| ||||| | ||| ||
Sbjct: 372 tctcctccaagtcttgaatcaacacattgcctaactttatcttcactaagccgtggagtt 313
Query: 441 gcccaggtcacaagactctgctgtccccttggcaatgtatggtcgacaggtttcctccca 500
||||| |||||||| || |||||||| ||||| |||||||| || ||||| || || |||
Sbjct: 312 gcccatgtcacaaggctttgctgtcctcttggtaatgtatgatccacaggctttcttcca 253
Query: 501 gtcaacagctcaagaagaacaaccccaaaactatatacatcactcttagagctgagttgc 560
|||| ||||| ||||||||||| |||||||| || || |||||||||||||| |||||
Sbjct: 252 gtcaggagctccagaagaacaactccaaaactgtagacgtcactcttagagctaagttgt 193
Query: 561 ccagtcatcgcatactcaggcgcatggtatccgaatgttccgagaaccctagttgagtga 620
|||||||| ||||||||||| ||||| || || |||||||| |||||||| || || |||
Sbjct: 192 ccagtcattgcatactcaggtgcatgatagccaaatgttccaagaaccctggtcgaatga 133
Query: 621 agccgagctgccatgtcaggagcttggttcgacagatcaaagtcagcgatcttagctaca 680
|| ||||||||||| |||||||||||||| |||| |||||| ||||| || || | ||||
Sbjct: 132 agtcgagctgccatatcaggagcttggtttgacaaatcaaaatcagctattttggataca 73
Query: 681 tcgtcatcgaaaagaaggacgttgctagacttgatgtctcggtgtatgatatggggctgc 740
|| | ||| || ||||| || ||||| ||||| ||||| | |||||||||||| ||||||
Sbjct: 72 tcattatcaaatagaagaacattgctggactttatgtccctgtgtatgatatgaggctgc 13
Query: 741 gctttctcatga 752
||||||||||||
Sbjct: 12 gctttctcatga 1
>gb|CL167686.1|CL167686 104_364_10810250_116_31803_314 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810250, DNA
sequence
Length = 759
Score = 299 bits (151), Expect = 3e-079
Identities = 243/272 (89%), Gaps = 15/272 (5%)
Strand = Plus / Plus
Query: 46 atagaaagaatcaaatactgtgggg-atacaagaatcttgtttacagctcaggggaagaa 104
||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 498 atagaaagaatcaaatattgtgggggatacaagaatcttgtttacaactcaggggaagaa 557
Query: 105 taatcacagacattacacgctgccagccacatgtccgcaacaacgacatcgacgagtcat 164
|||||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 558 taatcacaaatgttacacgctgccagccacatgtccgcaagaacgacatcgacgactcat 617
Query: 165 ataccttac----ctatcatacaagaacaagaggagggagagaagcaaacgcaaagctta 220
||| ||||| |||||||||||| || | ||||||||||||| ||||||
Sbjct: 618 atatcttacttatctatcatacaag----aggcgggggagagaagcaa------agctta 667
Query: 221 tgacccagcatgttctccagggttagtcgcccgcgcatgcgcattcagcaggggttgtag 280
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tgacccagcattttctcctgggttagtcgcccgcgcatgcgcattcagcaggggttgtag 727
Query: 281 cgccttgacaacaatgctcatgttcggccgga 312
|||||||||||||||||||||||| |||||||
Sbjct: 728 cgccttgacaacaatgctcatgtttggccgga 759
>gb|CN146844.1|CN146844 WOUND1_44_D12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_44_D12_A002 3', mRNA sequence
Length = 776
Score = 299 bits (151), Expect = 3e-079
Identities = 343/407 (84%)
Strand = Plus / Minus
Query: 261 gcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccgct 320
|||||||||||||| || |||||||| || || ||||||||||| || || ||||| |||
Sbjct: 418 gcattcagcaggggctggagcgccttcaccacgatgctcatgtttggtcgaaagtcagct 359
Query: 321 tcgtattgaacacacaaggcggcgacagccgcaaacttcgcaacagctttaggaggatag 380
|| ||||| ||||| | || || ||||| |||||||| ||||||| ||||||||||||
Sbjct: 358 tcatattgcacacagagtgcagcaacagctgcaaactttgcaacagatttaggaggatat 299
Query: 381 tcccctccaagtcttgagtcaacacactgtctaaccttgtcttcgctaagtcttggtgta 440
|| |||||||||||||| |||||||| || ||||| || ||||| ||||| | ||| ||
Sbjct: 298 tctcctccaagtcttgaatcaacacattgcctaactttatcttcactaagccgtggagtt 239
Query: 441 gcccaggtcacaagactctgctgtccccttggcaatgtatggtcgacaggtttcctccca 500
||||| |||||||| || |||||||| ||||| |||||||| || ||||| || || |||
Sbjct: 238 gcccatgtcacaaggctttgctgtcctcttggtaatgtatgatccacaggctttcttcca 179
Query: 501 gtcaacagctcaagaagaacaaccccaaaactatatacatcactcttagagctgagttgc 560
|||| ||||| ||||||||||| |||||||| || || |||||||||||||| |||||
Sbjct: 178 gtcaggagctccagaagaacaactccaaaactgtagacgtcactcttagagctaagttgt 119
Query: 561 ccagtcatcgcatactcaggcgcatggtatccgaatgttccgagaaccctagttgagtga 620
|||||||| ||||||||||| ||||| || || |||||||| |||||||| || || |||
Sbjct: 118 ccagtcattgcatactcaggtgcatgatagccaaatgttccaagaaccctggtcgaatga 59
Query: 621 agccgagctgccatgtcaggagcttggttcgacagatcaaagtcagc 667
|| ||||||||||| |||||||||||||| |||| |||||| |||||
Sbjct: 58 agtcgagctgccatatcaggagcttggtttgacaaatcaaaatcagc 12
>gb|CX615217.1|CX615217 GABR1_18_G08.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_18_G08_A002 5', mRNA sequence
Length = 697
Score = 295 bits (149), Expect = 5e-078
Identities = 322/377 (85%), Gaps = 2/377 (0%)
Strand = Plus / Minus
Query: 754 gatactcgaggcctttcgctgccccaaccgctatcttcacacgttgcgaccacgataaga 813
|||||||||||||||| ||||| ||||| || |||||||| ||||| ||| || ||||
Sbjct: 697 gatactcgaggccttttgctgctccaacagcaatcttcactcgttgtatccaggacaaga 638
Query: 814 ctggaccgggttgagcccctttaacccctttccttccatgaagcatatcatgaagggaac 873
||||||| || ||||| ||||| || ||||| | ||||||||||||||| ||||| ||||
Sbjct: 637 ctggaccaggctgagctcctttcacacctttgcgtccatgaagcatatcgtgaagagaac 578
Query: 874 ccattgtagcgaactcataagcaaggacgcggagtgt-cccatcagcacagtaaccaagc 932
|||| ||||| || ||||||||||||| |||| |||| ||||||| ||||||||||||||
Sbjct: 577 ccatagtagcaaattcataagcaaggatgcgg-gtgttcccatcaacacagtaaccaagc 519
Query: 933 aactcgacaacattttcatgcttcagccttgacaccatagacacctgggccaagaactct 992
||||| || ||||| |||||||| |||||||||||||| || ||||| || || ||||||
Sbjct: 518 aactctacgacattgtcatgcttaagccttgacaccatggagacctgtgctaaaaactct 459
Query: 993 tggtctggctgcttgttagaatccaactttttgaccgcggcactcctaccatttcttaga 1052
|| |||||||||||| | ||||| |||||||| | ||| ||||||||||||||| |||
Sbjct: 458 tgctctggctgcttgcttgaatctaacttttttatcgcagcactcctaccattttctagt 399
Query: 1053 acacccaagtatactctgccaaaggatccctcaccaatcaaagcttcatcaccaaaaccc 1112
||||| || |||||||||||||| || ||||| ||||||||||||||||| |||||| ||
Sbjct: 398 acaccaaaatatactctgccaaaagacccctcgccaatcaaagcttcatcgccaaaagcc 339
Query: 1113 ttggtcacctccctaat 1129
|| || ||||| |||||
Sbjct: 338 tttgtgacctctctaat 322
>gb|CW396746.1|CW396746 fsbb001f085f09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f085f09, DNA
sequence
Length = 766
Score = 266 bits (134), Expect = 4e-069
Identities = 236/267 (88%), Gaps = 16/267 (5%)
Strand = Plus / Minus
Query: 97 gggaagaataatca-cagacattacacgctgccag-ccacatgtccgcaacaacgacatc 154
|||||||||||||| || | |||||||||||||| |||||||||||||| |||||||||
Sbjct: 766 gggaagaataatcaacaaatgttacacgctgccaggccacatgtccgcaagaacgacatc 707
Query: 155 gacgagtcatataccttac----ctatcatacaagaacaagaggagggagagaagcaaac 210
||||| ||||||| ||||| |||||||||||| || | |||||||||||||
Sbjct: 706 gacgactcatatatcttacttatctatcatacaag----aggcgggggagagaagcaa-- 653
Query: 211 gcaaagcttatgacccagcatgttctccagggttagtcgcccgcgcatgcgcattcagca 270
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 652 ----agcttatgacccagcattttctcctgggttagtcgcccgcgcatgcgcattcagca 597
Query: 271 ggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccgcttcgtattgaa 330
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 596 ggggttgtagcgccttgacaacaatgctcatgtttggccggaagtctgcttcgtattgaa 537
Query: 331 cacacaaggcggcgacagccgcaaact 357
||||||||||||| ||||| |||||||
Sbjct: 536 cacacaaggcggcaacagctgcaaact 510
Score = 151 bits (76), Expect = 2e-034
Identities = 82/84 (97%)
Strand = Plus / Minus
Query: 360 gcaacagctttaggaggatagtcccctccaagtcttgagtcaacacactgtctaaccttg 419
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 148 gcaacagctttcggaggatagtcccctccaagtcttgagtcaacacattgtctaaccttg 89
Query: 420 tcttcgctaagtcttggtgtagcc 443
||||||||||||||||||||||||
Sbjct: 88 tcttcgctaagtcttggtgtagcc 65
>gb|CD225972.1|CD225972 CCC1_42_F10.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_42_F10_A007 5', mRNA sequence
Length = 666
Score = 264 bits (133), Expect = 2e-068
Identities = 276/321 (85%), Gaps = 2/321 (0%)
Strand = Plus / Minus
Query: 810 aagactggaccgggttgagcccctttaacccctttccttccatgaagcatatcatgaagg 869
||||||||||| || ||||| ||||| || ||||| | ||||||||||||||| |||||
Sbjct: 632 aagactggaccaggctgagctcctttcacacctttgcgtccatgaagcatatcgtgaaga 573
Query: 870 gaacccattgtagcgaactcataagcaaggacgcggagtgt-cccatcagcacagtaacc 928
|||||||| ||||| || ||||||||||||| |||| |||| ||||||| ||||||||||
Sbjct: 572 gaacccatagtagcaaattcataagcaaggatgcgg-gtgttcccatcaacacagtaacc 514
Query: 929 aagcaactcgacaacattttcatgcttcagccttgacaccatagacacctgggccaagaa 988
||||||||| || ||||| |||||||| |||||||||||||| || ||||| || || ||
Sbjct: 513 aagcaactctacgacattgtcatgcttaagccttgacaccatggagacctgtgctaaaaa 454
Query: 989 ctcttggtctggctgcttgttagaatccaactttttgaccgcggcactcctaccatttct 1048
|||||| |||||||||||| | ||||| |||||||| | ||| |||||||||||||||
Sbjct: 453 ctcttgctctggctgcttgcttgaatctaacttttttatcgcagcactcctaccattttc 394
Query: 1049 tagaacacccaagtatactctgccaaaggatccctcaccaatcaaagcttcatcaccaaa 1108
||| ||||| || |||||||||||||| || ||||| ||||||||||||||||| |||||
Sbjct: 393 tagtacaccaaaatatactctgccaaaagacccctcgccaatcaaagcttcatcgccaaa 334
Query: 1109 acccttggtcacctccctaat 1129
| |||| || ||||| |||||
Sbjct: 333 agcctttgtgacctctctaat 313
>gb|CW053497.1|CW053497 104_293_10515996_115_30191 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515996, DNA
sequence
Length = 591
Score = 256 bits (129), Expect = 4e-066
Identities = 208/234 (88%), Gaps = 14/234 (5%)
Strand = Plus / Minus
Query: 128 cagccacatgtccgcaacaacgacatcgacgagtcatataccttac----ctatcataca 183
||||||||||||||||| |||||||||||||| ||||||| ||||| ||||||||||
Sbjct: 591 cagccacatgtccgcaagaacgacatcgacgactcatatatcttacttatctatcataca 532
Query: 184 agaacaagaggagggagagaagcaaacgcaaagcttatgacccagcatgttctccagggt 243
|| || | ||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct: 531 ag----aggcgggggagagaagcaa------agcttatgacccagcattttctcctgggt 482
Query: 244 tagtcgcccgcgcatgcgcattcagcaggggttgtagcgccttgacaacaatgctcatgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tagtcgcccgcgcatgcgcattcagcaggggttgtagcgccttgacaacaatgctcatgt 422
Query: 304 tcggccggaagtccgcttcgtattgaacacacaaggcggcgacagccgcaaact 357
| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct: 421 ttggccggaagtctgcttcgtattgaacacacaaggcggcaacagctgcaaact 368
>gb|CD212998.1|CD212998 HS1_17_A06.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_17_A06_A012 5', mRNA sequence
Length = 643
Score = 244 bits (123), Expect = 1e-062
Identities = 245/283 (86%), Gaps = 2/283 (0%)
Strand = Plus / Minus
Query: 848 tccatgaagcatatcatgaagggaacccattgtagcgaactcataagcaaggacgcggag 907
||||||||||||||| ||||| |||||||| ||||| || ||||||||||||| |||| |
Sbjct: 643 tccatgaagcatatcgtgaagagaacccatagtagcaaattcataagcaaggatgcgg-g 585
Query: 908 tgt-cccatcagcacagtaaccaagcaactcgacaacattttcatgcttcagccttgaca 966
||| ||||||| ||||||||||||||||||| || ||||| |||||||| ||||||||||
Sbjct: 584 tgttcccatcaacacagtaaccaagcaactctacgacattgtcatgcttaagccttgaca 525
Query: 967 ccatagacacctgggccaagaactcttggtctggctgcttgttagaatccaactttttga 1026
|||| || ||||| || || |||||||| |||||||||||| | ||||| |||||||| |
Sbjct: 524 ccatggagacctgtgctaaaaactcttgctctggctgcttgcttgaatctaactttttta 465
Query: 1027 ccgcggcactcctaccatttcttagaacacccaagtatactctgccaaaggatccctcac 1086
||| ||||||||||||||| ||| ||||| || |||||||||||||| || ||||| |
Sbjct: 464 tcgcagcactcctaccattttctagtacaccaaaatatactctgccaaaagacccctcgc 405
Query: 1087 caatcaaagcttcatcaccaaaacccttggtcacctccctaat 1129
|||||||||||||||| |||||| |||| || ||||| |||||
Sbjct: 404 caatcaaagcttcatcgccaaaagcctttgtgacctctctaat 362
>gb|BG464514.1|BG464514 EM1_70_F10.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 652
Score = 234 bits (118), Expect = 1e-059
Identities = 274/326 (84%)
Strand = Plus / Minus
Query: 261 gcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccgct 320
|||||||||||||| || |||||||| || || ||||||||||| || || ||||| |||
Sbjct: 338 gcattcagcaggggctggagcgccttcaccacgatgctcatgtttggtcgaaagtcagct 279
Query: 321 tcgtattgaacacacaaggcggcgacagccgcaaacttcgcaacagctttaggaggatag 380
|| ||||| ||||| | || || ||||| |||||||| ||||||| ||||||||||||
Sbjct: 278 tcatattgcacacagagtgcagcaacagctgcaaactttgcaacagatttaggaggatat 219
Query: 381 tcccctccaagtcttgagtcaacacactgtctaaccttgtcttcgctaagtcttggtgta 440
|| |||||||||||||| |||||||| || ||||| || ||||| ||||| | ||| ||
Sbjct: 218 tctcctccaagtcttgaatcaacacattgcctaactttatcttcactaagccgtggagtt 159
Query: 441 gcccaggtcacaagactctgctgtccccttggcaatgtatggtcgacaggtttcctccca 500
||||| |||||||| || |||||||| ||||| |||||||| || ||||| || || |||
Sbjct: 158 gcccatgtcacaaggctttgctgtcctcttggtaatgtatgatccacaggctttcttcca 99
Query: 501 gtcaacagctcaagaagaacaaccccaaaactatatacatcactcttagagctgagttgc 560
|||| ||||| ||||||||||| |||||||| || || |||||||||||||| |||||
Sbjct: 98 gtcaggagctccagaagaacaactccaaaactgtagacgtcactcttagagctaagttgt 39
Query: 561 ccagtcatcgcatactcaggcgcatg 586
|||||||| ||||||||||| |||||
Sbjct: 38 ccagtcattgcatactcaggtgcatg 13
>gb|CB927000.1|CB927000 ABA1_11_D03.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_11_D03_A012 5', mRNA sequence
Length = 571
Score = 224 bits (113), Expect = 1e-056
Identities = 238/277 (85%), Gaps = 2/277 (0%)
Strand = Plus / Minus
Query: 854 aagcatatcatgaagggaacccattgtagcgaactcataagcaaggacgcggagtgt-cc 912
||||||||| ||||| |||||||| ||||| || ||||||||||||| |||| |||| ||
Sbjct: 571 aagcatatcgtgaagagaacccatagtagcaaattcataagcaaggatgcgg-gtgttcc 513
Query: 913 catcagcacagtaaccaagcaactcgacaacattttcatgcttcagccttgacaccatag 972
||||| ||||||||||||||||||| || ||||| |||||||| |||||||||||||| |
Sbjct: 512 catcaacacagtaaccaagcaactctacgacattgtcatgcttaagccttgacaccatgg 453
Query: 973 acacctgggccaagaactcttggtctggctgcttgttagaatccaactttttgaccgcgg 1032
| ||||| || || |||||||| |||||||||||| | ||||| |||||||| | ||| |
Sbjct: 452 agacctgtgctaaaaactcttgctctggctgcttgcttgaatctaacttttttatcgcag 393
Query: 1033 cactcctaccatttcttagaacacccaagtatactctgccaaaggatccctcaccaatca 1092
|||||||||||||| ||| ||||| || ||| |||||||||| || ||||| |||||||
Sbjct: 392 cactcctaccattttctagtacaccaaaatatgctctgccaaaagacccctcgccaatca 333
Query: 1093 aagcttcatcaccaaaacccttggtcacctccctaat 1129
|||||||||| |||||| |||| || ||||| |||||
Sbjct: 332 aagcttcatcgccaaaagcctttgtgacctctctaat 296
>gb|CW327927.1|CW327927 104_823_11479021_116_35975_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479021, DNA
sequence
Length = 625
Score = 206 bits (104), Expect = 3e-051
Identities = 119/124 (95%)
Strand = Plus / Plus
Query: 234 tctccagggttagtcgcccgcgcatgcgcattcagcaggggttgtagcgccttgacaaca 293
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctcctgggttagtcgcccgcgcatgcgcattcagcaggggttgtagcgccttgacaaca 60
Query: 294 atgctcatgttcggccggaagtccgcttcgtattgaacacacaaggcggcgacagccgca 353
||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 61 atgctcatgtttggccggaagtctgcttcgtattgaacacacaaggcggcaacagctgca 120
Query: 354 aact 357
||||
Sbjct: 121 aact 124
Score = 151 bits (76), Expect = 2e-034
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 360 gcaacagctttaggaggatagtcccctccaagtcttgagtcaacacactgtctaaccttg 419
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 486 gcaacagctttcggaggatagtcccctccaagtcttgagtcaacacattgtctaaccttg 545
Query: 420 tcttcgctaagtcttggtgtagcc 443
||||||||||||||||||||||||
Sbjct: 546 tcttcgctaagtcttggtgtagcc 569
>gb|CD212893.1|CD212893 HS1_17_A06.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_17_A06_A012 3', mRNA sequence
Length = 593
Score = 184 bits (93), Expect = 1e-044
Identities = 237/285 (83%)
Strand = Plus / Minus
Query: 261 gcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccgct 320
|||||||||||||| || |||||||| || || ||||||||||| || || ||||| |||
Sbjct: 285 gcattcagcaggggctggagcgccttcaccacgatgctcatgtttggtcgaaagtcagct 226
Query: 321 tcgtattgaacacacaaggcggcgacagccgcaaacttcgcaacagctttaggaggatag 380
|| ||||| ||||| | || || ||||| |||||||| ||||||| ||||||||||||
Sbjct: 225 tcatattgcacacagagtgcagcaacagctgcaaactttgcaacagatttaggaggatat 166
Query: 381 tcccctccaagtcttgagtcaacacactgtctaaccttgtcttcgctaagtcttggtgta 440
|| |||||||||||||| |||||||| || ||||| || ||||| ||||| | ||| ||
Sbjct: 165 tctcctccaagtcttgaatcaacacattgcctaactttatcttcactaagccgtggagtt 106
Query: 441 gcccaggtcacaagactctgctgtccccttggcaatgtatggtcgacaggtttcctccca 500
||||| |||||||| || |||||||| ||||| |||||||| || ||||| || || |||
Sbjct: 105 gcccatgtcacaaggctttgctgtcctcttggtaatgtatgatccacaggctttcttcca 46
Query: 501 gtcaacagctcaagaagaacaaccccaaaactatatacatcactc 545
|||| ||||| ||||||||||| |||||||| || || ||||||
Sbjct: 45 gtcaggagctccagaagaacaactccaaaactgtagacgtcactc 1
>gb|DN552573.1|DN552573 pSHR-RT-A-H2_D06_C108 pSHR Sorghum halepense cDNA, mRNA sequence
Length = 239
Score = 178 bits (90), Expect = 7e-043
Identities = 124/134 (92%), Gaps = 1/134 (0%)
Strand = Plus / Minus
Query: 46 atagaaagaatcaaatactgtgggg-atacaagaatcttgtttacagctcaggggaagaa 104
||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 152 atagaaagaatcaaatattgtgggggatacaagaatcttgtttacaactcaggggaagaa 93
Query: 105 taatcacagacattacacgctgccagccacatgtccgcaacaacgacatcgacgagtcat 164
|||||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 92 taatcacaaatgttacacgctgccagccacatgtccgcaagaacgacatcgacgactcat 33
Query: 165 ataccttacctatc 178
||| ||||| ||||
Sbjct: 32 atatcttacttatc 19
>gb|BG464187.1|BG464187 EM1_70_F10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 598
Score = 159 bits (80), Expect = 7e-037
Identities = 161/188 (85%)
Strand = Plus / Minus
Query: 942 acattttcatgcttcagccttgacaccatagacacctgggccaagaactcttggtctggc 1001
||||| |||||||| |||||||||||||| || ||||| || || |||||||| ||||||
Sbjct: 594 acattgtcatgcttaagccttgacaccatggagacctgtgctaaaaactcttgctctggc 535
Query: 1002 tgcttgttagaatccaactttttgaccgcggcactcctaccatttcttagaacacccaag 1061
|||||| | ||||| |||||||| | ||| ||||||||||||||| ||| ||||| ||
Sbjct: 534 tgcttgcttgaatctaacttttttatcgcagcactcctaccattttctagtacaccaaaa 475
Query: 1062 tatactctgccaaaggatccctcaccaatcaaagcttcatcaccaaaacccttggtcacc 1121
|||||||||||||| || ||||| ||||||||||||||||| |||||| |||| || |||
Sbjct: 474 tatactctgccaaaagacccctcgccaatcaaagcttcatcgccaaaagcctttgtgacc 415
Query: 1122 tccctaat 1129
|| |||||
Sbjct: 414 tctctaat 407
>gb|BM322264.1|BM322264 PIC1_2_C09.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 500
Score = 159 bits (80), Expect = 7e-037
Identities = 170/200 (85%)
Strand = Plus / Minus
Query: 930 agcaactcgacaacattttcatgcttcagccttgacaccatagacacctgggccaagaac 989
|||||||| || ||||| |||||||| ||| |||||||||| || ||||| || || |||
Sbjct: 500 agcaactctacgacattgtcatgcttaagctttgacaccatggagacctgtgctaaaaac 441
Query: 990 tcttggtctggctgcttgttagaatccaactttttgaccgcggcactcctaccatttctt 1049
||||| |||||||||||| | ||||| |||||||| | ||| ||||||||||||||| |
Sbjct: 440 tcttgctctggctgcttgcttgaatctaacttttttatcgcagcactcctaccattttct 381
Query: 1050 agaacacccaagtatactctgccaaaggatccctcaccaatcaaagcttcatcaccaaaa 1109
|| ||||| || |||||||||||||| || ||||| ||||||||||||||||| ||||||
Sbjct: 380 agtacaccaaaatatactctgccaaaagacccctcgccaatcaaagcttcatcgccaaaa 321
Query: 1110 cccttggtcacctccctaat 1129
|||| || ||||| |||||
Sbjct: 320 gcctttgtgacctctctaat 301
>gb|CD225867.1|CD225867 CCC1_42_F10.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_42_F10_A007 3', mRNA sequence
Length = 585
Score = 159 bits (80), Expect = 7e-037
Identities = 203/244 (83%)
Strand = Plus / Minus
Query: 261 gcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccgct 320
|||||||||||||| || |||||||| || || ||||||||||| || || ||||| |||
Sbjct: 245 gcattcagcaggggctggagcgccttcaccacgatgctcatgtttggtcgaaagtcagct 186
Query: 321 tcgtattgaacacacaaggcggcgacagccgcaaacttcgcaacagctttaggaggatag 380
|| ||||| ||||| | || || ||||| |||||||| ||||||| ||||||||||||
Sbjct: 185 tcatattgcacacagagtgcagcaacagctgcaaactttgcaacagatttaggaggatat 126
Query: 381 tcccctccaagtcttgagtcaacacactgtctaaccttgtcttcgctaagtcttggtgta 440
|| |||||||||||||| |||||||| || ||||| || ||||| ||||| | ||| ||
Sbjct: 125 tctcctccaagtcttgaatcaacacattgcctaactttatcttcactaagccgtggagtt 66
Query: 441 gcccaggtcacaagactctgctgtccccttggcaatgtatggtcgacaggtttcctccca 500
||||| |||||||| || |||||||| ||||| |||||||| || ||||| || || |||
Sbjct: 65 gcccatgtcacaaggctttgctgtcctcttggtaatgtatgatccacaggctttcttcca 6
Query: 501 gtca 504
||||
Sbjct: 5 gtca 2
>gb|CW290911.1|CW290911 104_770_11413271_148_35561_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11413271, DNA
sequence
Length = 544
Score = 151 bits (76), Expect = 2e-034
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 360 gcaacagctttaggaggatagtcccctccaagtcttgagtcaacacactgtctaaccttg 419
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 314 gcaacagctttcggaggatagtcccctccaagtcttgagtcaacacattgtctaaccttg 373
Query: 420 tcttcgctaagtcttggtgtagcc 443
||||||||||||||||||||||||
Sbjct: 374 tcttcgctaagtcttggtgtagcc 397
Score = 87.7 bits (44), Expect = 2e-015
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 442 cccaggtcacaagactctgctgtccccttggcaatgtatggtcgacaggttt 493
|||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 493 cccaagtcacaagactctgctgtccccttggtaatgtatggtcgacaggttt 544
>gb|CN133297.1|CN133297 OX1_11_G11.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_11_G11_A002 3', mRNA sequence
Length = 739
Score = 143 bits (72), Expect = 4e-032
Identities = 208/251 (82%), Gaps = 3/251 (1%)
Strand = Plus / Minus
Query: 399 tcaacacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactc 458
|||||||| ||| | |||||||| || | ||| |||||||| ||||| || |||||||||
Sbjct: 488 tcaacacattgtttcaccttgtcctcaccaagccttggtgttgcccatgtaacaagactc 429
Query: 459 tgctgtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaaga 518
||||| |||||||||| |||||| || ||||||||||| ||||| | ||||| | |||
Sbjct: 428 tgctggccccttggcattgtatgatctacaggtttccttccagttagaagctctaaaagg 369
Query: 519 acaaccccaaaactatatacatcac--tcttagagctgagttgcccagtcatcgcatact 576
||||||||||||||||||||||||| | || ||| | || || |||||||| |||||||
Sbjct: 368 acaaccccaaaactatatacatcactttttttgag-tcagctggccagtcatagcatact 310
Query: 577 caggcgcatggtatccgaatgttccgagaaccctagttgagtgaagccgagctgccatgt 636
| || |||||||||||||| |||||||| || | ||| || ||||| ||||| ||||| |
Sbjct: 309 ctggagcatggtatccgaaggttccgaggacgcgagtagaatgaagacgagcagccatat 250
Query: 637 caggagcttgg 647
| |||| ||||
Sbjct: 249 ctggagattgg 239
>gb|BG558591.1|BG558591 RHIZ2_57_G11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 429
Score = 131 bits (66), Expect = 2e-028
Identities = 144/170 (84%)
Strand = Plus / Minus
Query: 261 gcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccgct 320
|||||||||||||| || |||||||| || || ||||||||||| || || ||||| |||
Sbjct: 178 gcattcagcaggggctggagcgccttcaccacgatgctcatgtttggtcgaaagtcagct 119
Query: 321 tcgtattgaacacacaaggcggcgacagccgcaaacttcgcaacagctttaggaggatag 380
|| ||||| ||||| | || || ||||| |||||||| ||||||| ||||||||||||
Sbjct: 118 tcatattgcacacagagtgcagcaacagctgcaaactttgcaacagatttaggaggatat 59
Query: 381 tcccctccaagtcttgagtcaacacactgtctaaccttgtcttcgctaag 430
|| |||||||||||||| ||||||||||| ||||| || ||||| |||||
Sbjct: 58 tctcctccaagtcttgaatcaacacactgcctaactttatcttcactaag 9
>gb|CW233098.1|CW233098 104_686_11213186_116_37372_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213186, DNA
sequence
Length = 678
Score = 129 bits (65), Expect = 6e-028
Identities = 134/157 (85%)
Strand = Plus / Plus
Query: 973 acacctgggccaagaactcttggtctggctgcttgttagaatccaactttttgaccgcgg 1032
||||||| || || |||||||| |||||||||||| | ||||| |||||||| | ||| |
Sbjct: 431 acacctgtgctaaaaactcttgctctggctgcttgcttgaatctaacttttttatcgcag 490
Query: 1033 cactcctaccatttcttagaacacccaagtatactctgccaaaggatccctcaccaatca 1092
|||||||||||||| ||| ||||| || |||||||||||||| || ||||| |||||||
Sbjct: 491 cactcctaccattttctagtacaccaaaatatactctgccaaaagacccctcgccaatca 550
Query: 1093 aagcttcatcaccaaaacccttggtcacctccctaat 1129
|||||||||| |||||| |||| || ||||| |||||
Sbjct: 551 aagcttcatcgccaaaagcctttgtgacctctctaat 587
Score = 127 bits (64), Expect = 2e-027
Identities = 117/132 (88%), Gaps = 2/132 (1%)
Strand = Plus / Plus
Query: 849 ccatgaagcatatcatgaagggaacccattgtagcgaactcataagcaaggacgcggagt 908
|||||||||||||| ||||| |||||||| ||||| || ||||||||||||| |||| ||
Sbjct: 230 ccatgaagcatatcgtgaagagaacccatagtagcaaattcataagcaaggatgcgg-gt 288
Query: 909 gt-cccatcagcacagtaaccaagcaactcgacaacattttcatgcttcagccttgacac 967
|| ||||||| ||||||||||||||||||| || ||||| |||||||| |||||||||||
Sbjct: 289 gttcccatcaacacagtaaccaagcaactctacgacattgtcatgcttaagccttgacac 348
Query: 968 catagacacctg 979
||| || |||||
Sbjct: 349 catggagacctg 360
Score = 105 bits (53), Expect = 9e-021
Identities = 101/117 (86%)
Strand = Plus / Plus
Query: 728 gatatggggctgcgctttctcatgaagatactcgaggcctttcgctgccccaaccgctat 787
|||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| || ||
Sbjct: 1 gatatgaggctgcgctttctcatgaagatactcgaggccttttgctgctccaacagcaat 60
Query: 788 cttcacacgttgcgaccacgataagactggaccgggttgagcccctttaaccccttt 844
|||||| ||||| ||| || ||||||||||| || ||||| ||||| || |||||
Sbjct: 61 cttcactcgttgtatccaggacaagactggaccaggctgagctcctttcacaccttt 117
>gb|BE361844.1|BE361844 DG1_82_D07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 536
Score = 127 bits (64), Expect = 2e-027
Identities = 165/196 (84%), Gaps = 2/196 (1%)
Strand = Plus / Minus
Query: 399 tcaacacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactc 458
|||||||| ||| | |||||||| || | ||| |||||||| ||||| || |||||||||
Sbjct: 195 tcaacacattgtttcaccttgtcctcaccaagccttggtgttgcccatgtaacaagactc 136
Query: 459 tgctgtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaaga 518
||||| |||||||||| |||||| || ||||||||||| ||||| | ||||| | |||
Sbjct: 135 tgctggccccttggcattgtatgatctacaggtttccttccagttagaagctctaaaagg 76
Query: 519 acaaccccaaaactatatacatcac-tcttagagctgagttgcccagtcatcgcatactc 577
||||||||||||||||||||||||| | || ||| | || || |||||||| ||||||||
Sbjct: 75 acaaccccaaaactatatacatcacttttttgag-tcagctggccagtcatagcatactc 17
Query: 578 aggcgcatggtatccg 593
|| ||||||||||||
Sbjct: 16 tggagcatggtatccg 1
>gb|BE362004.1|BE362004 DG1_83_H02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 532
Score = 123 bits (62), Expect = 4e-026
Identities = 125/146 (85%)
Strand = Plus / Minus
Query: 399 tcaacacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactc 458
|||||||| ||| | |||||||| || | ||| |||||||| ||||| || |||||||||
Sbjct: 192 tcaacacattgtttcaccttgtcctcaccaagccttggtgttgcccatgtaacaagactc 133
Query: 459 tgctgtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaaga 518
||||| |||||||||| |||||| || ||||||||||| ||||| | ||||| | |||
Sbjct: 132 tgctggccccttggcattgtatgatctacaggtttccttccagttagaagctctaaaagg 73
Query: 519 acaaccccaaaactatatacatcact 544
||||||||||||||||||||||||||
Sbjct: 72 acaaccccaaaactatatacatcact 47
>gb|CD225595.1|CD225595 CCC1_40_E11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_40_E11_A007 3', mRNA sequence
Length = 519
Score = 123 bits (62), Expect = 4e-026
Identities = 125/146 (85%)
Strand = Plus / Minus
Query: 399 tcaacacactgtctaaccttgtcttcgctaagtcttggtgtagcccaggtcacaagactc 458
|||||||| ||| | |||||||| || | ||| |||||||| ||||| || |||||||||
Sbjct: 193 tcaacacattgtttcaccttgtcctcaccaagccttggtgttgcccatgtaacaagactc 134
Query: 459 tgctgtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagctcaagaaga 518
||||| |||||||||| |||||| || ||||||||||| ||||| | ||||| | |||
Sbjct: 133 tgctggccccttggcattgtatgatctacaggtttccttccagttagaagctctaaaagg 74
Query: 519 acaaccccaaaactatatacatcact 544
||||||||||||||||||||||||||
Sbjct: 73 acaaccccaaaactatatacatcact 48
>gb|CB926896.1|CB926896 ABA1_11_D03.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_11_D03_A012 3', mRNA sequence
Length = 510
Score = 115 bits (58), Expect = 9e-024
Identities = 124/146 (84%)
Strand = Plus / Minus
Query: 261 gcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccgct 320
|||||||||||||| || |||||||| || || ||||||||||| || || ||||| |||
Sbjct: 170 gcattcagcaggggctggagcgccttcaccacgatgctcatgtttggtcgaaagtcagct 111
Query: 321 tcgtattgaacacacaaggcggcgacagccgcaaacttcgcaacagctttaggaggatag 380
|| ||||| ||||| | || || ||||| |||||||| ||||||| ||||||||||||
Sbjct: 110 tcatattgcacacagagtgcagcaacagctgcaaactttgcaacagatttaggaggatat 51
Query: 381 tcccctccaagtcttgagtcaacaca 406
|| |||||||||||||| ||||||||
Sbjct: 50 tctcctccaagtcttgaatcaacaca 25
>gb|CX610562.1|CX610562 ANR1_19_B01.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_19_B01_A002 5', mRNA sequence
Length = 683
Score = 113 bits (57), Expect = 4e-023
Identities = 75/81 (92%)
Strand = Plus / Minus
Query: 1052 aacacccaagtatactctgccaaaggatccctcaccaatcaaagcttcatcaccaaaacc 1111
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 676 aacaccgaagtatactctgccaaaggagccctcaccaatcaaggcttcatcaccaaaacc 617
Query: 1112 cttggtcacctccctaatctc 1132
|| |||||||||| ||||||
Sbjct: 616 gttagtcacctcccgaatctc 596
>gb|BG558883.1|BG558883 RHIZ2_57_G11.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 460
Score = 109 bits (55), Expect = 6e-022
Identities = 104/119 (87%), Gaps = 1/119 (0%)
Strand = Plus / Minus
Query: 1011 gaatccaactttttgaccgcggcactcctaccatttcttagaacacccaagtatactctg 1070
||||| |||||||||| ||| ||||||||||| ||||| || ||||| || |||||||||
Sbjct: 459 gaatctaactttttgatcgcagcactcctaccttttct-agtacaccaaaatatactctg 401
Query: 1071 ccaaaggatccctcaccaatcaaagcttcatcaccaaaacccttggtcacctccctaat 1129
||||| || ||||||||||||||||||||||| |||||| |||| || ||||| |||||
Sbjct: 400 ccaaaagacccctcaccaatcaaagcttcatcgccaaaagcctttgtgacctctctaat 342
>gb|CF480277.1|CF480277 POL1_64_F10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_64_F10_A002 5', mRNA sequence
Length = 275
Score = 103 bits (52), Expect = 4e-020
Identities = 81/88 (92%), Gaps = 2/88 (2%)
Strand = Plus / Minus
Query: 46 atagaaagaatcaaatactgtgggg-atacaagaatcttgtttacagctcaggggaagaa 104
||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 88 atagaaagaatcaaatattgtgggggatacaagaatcttgtttacaactcaggggaagaa 29
Query: 105 taat-cacagacattacacgctgccagc 131
|||| |||| | |||||||||||||||
Sbjct: 28 taatacacaaatgttacacgctgccagc 1
>gb|CL163078.1|CL163078 104_356_10806878_116_31811_014 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806878, DNA
sequence
Length = 730
Score = 101 bits (51), Expect = 1e-019
Identities = 84/95 (88%)
Strand = Plus / Minus
Query: 450 acaagactctgctgtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagc 509
|||||||||||||| |||||||||| |||||| || ||||||||||| ||||| | |||
Sbjct: 450 acaagactctgctggccccttggcattgtatgatctacaggtttccttccagttagaagc 391
Query: 510 tcaagaagaacaaccccaaaactatatacatcact 544
|| | ||| ||||||||||||||||||||||||||
Sbjct: 390 tctaaaaggacaaccccaaaactatatacatcact 356
Score = 40.1 bits (20), Expect = 0.44
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 573 tactcaggcgcatggtatccgaatgttccgag 604
||||| || |||||||||||||| ||||||||
Sbjct: 32 tactctggagcatggtatccgaaggttccgag 1
>gb|BM324830.1|BM324830 PIC1_36_C07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 464
Score = 91.7 bits (46), Expect = 1e-016
Identities = 85/98 (86%)
Strand = Plus / Minus
Query: 1032 gcactcctaccatttcttagaacacccaagtatactctgccaaaggatccctcaccaatc 1091
||||||||||||||| ||| ||||| || |||||||||||||| || ||||| ||||||
Sbjct: 456 gcactcctaccattttctagtacaccaaaatatactctgccaaaagacccctcgccaatc 397
Query: 1092 aaagcttcatcaccaaaacccttggtcacctccctaat 1129
||||||||||| |||||| |||| || ||||| |||||
Sbjct: 396 aaagcttcatcgccaaaagcctttgtgacctctctaat 359
>gb|CL163077.1|CL163077 104_356_10806878_114_31810_014 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806878, DNA
sequence
Length = 716
Score = 87.7 bits (44), Expect = 2e-015
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 450 acaagactctgctgtccccttggcaatgtatggtcgacaggtttcctcccagtcaacagc 509
|||||||||||||| |||||||||| |||||| || ||||||||||| ||||| | |||
Sbjct: 579 acaagactctgctggccccttggcattgtatgatctacaggtttccttccagttagaagc 638
Query: 510 tcaagaagaacaaccccaaaactatatacatcact 544
| ||| ||||||||||||||||||||||||||
Sbjct: 639 tnctaaaggacaaccccaaaactatatacatcact 673
>gb|CW172212.1|CW172212 104_583_11156163_116_36533_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156163, DNA
sequence
Length = 691
Score = 69.9 bits (35), Expect = 5e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 360 gcaacagctttaggaggatagtcccctccaagtcttgagtcaacacactgtctaaccttg 419
||||||| |||||||||||| || |||||||||||||| |||||||| || ||||| ||
Sbjct: 104 gcaacagatttaggaggatattctcctccaagtcttgaatcaacacattgcctaacttta 45
Query: 420 tcttcgctaag 430
||||| |||||
Sbjct: 44 tcttcactaag 34
Score = 60.0 bits (30), Expect = 5e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 261 gcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccgct 320
|||||||||||||| || |||||||| || || ||||||||||| || || ||||| |||
Sbjct: 522 gcattcagcaggggctggagcgccttcaccacgatgctcatgtttggtcgaaagtcagct 463
Query: 321 tcgtattgaacaca 334
|| ||||| |||||
Sbjct: 462 tcatattgcacaca 449
>gb|BM329325.1|BM329325 PIC1_36_C07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 473
Score = 65.9 bits (33), Expect = 8e-009
Identities = 87/105 (82%)
Strand = Plus / Minus
Query: 261 gcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccgct 320
|||||||||||||| || |||||||| || || ||||||||||| || || ||||| |||
Sbjct: 105 gcattcagcaggggctggagcgccttcaccacgatgctcatgtttggtcgaaagtcagct 46
Query: 321 tcgtattgaacacacaaggcggcgacagccgcaaacttcgcaaca 365
|| ||||| ||||| | || || ||||| |||||||| ||||||
Sbjct: 45 tcatattgcacacagagtgcagcaacagctgcaaactttgcaaca 1
>gb|CW194914.1|CW194914 104_618_11180356_116_36794_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11180356, DNA
sequence
Length = 549
Score = 63.9 bits (32), Expect = 3e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 360 gcaacagctttaggaggatagtcccctccaagtcttgagtcaacacactgtctaac 415
||||||| |||||||||||| || |||||||||||||| |||||||| || |||||
Sbjct: 104 gcaacagatttaggaggatattctcctccaagtcttgaatcaacacattgcctaac 49
Score = 60.0 bits (30), Expect = 5e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 261 gcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccgct 320
||||||||||||||||| |||||||| || || ||| ||||||| || || ||||| |||
Sbjct: 523 gcattcagcaggggttggagcgccttcaccacgatgatcatgtttggtcgaaagtcagct 464
Query: 321 tcgtattgaacaca 334
|| ||||| |||||
Sbjct: 463 tcatattgcacaca 450
>gb|CW883769.1|CW883769 Sorghum CISP Intron:I27_F07_F_SRSC5_011_SORG_BTXX BTXX Sorghum
bicolor genomic, DNA sequence
Length = 115
Score = 63.9 bits (32), Expect = 3e-008
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 536 tacatcactcttagagctgagttgcccagtcatcgcatac 575
|||||| |||||||||||||||||||||||||| ||||||
Sbjct: 1 tacatcgctcttagagctgagttgcccagtcattgcatac 40
>gb|CW263133.1|CW263133 104_731_11230489_116_35213_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11230489, DNA
sequence
Length = 671
Score = 60.0 bits (30), Expect = 5e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 261 gcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccgct 320
|||||||||||||| || |||||||| || || ||||||||||| || || ||||| |||
Sbjct: 199 gcattcagcaggggctggagcgccttcaccacgatgctcatgtttggtcgaaagtcagct 140
Query: 321 tcgtattgaacaca 334
|| ||||| |||||
Sbjct: 139 tcatattgcacaca 126
>gb|CW263134.1|CW263134 104_731_11230489_148_35217_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11230489, DNA
sequence
Length = 696
Score = 60.0 bits (30), Expect = 5e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 261 gcattcagcaggggttgtagcgccttgacaacaatgctcatgttcggccggaagtccgct 320
|||||||||||||| || |||||||| || || ||||||||||| || || ||||| |||
Sbjct: 513 gcattcagcaggggctggagcgccttcaccacgatgctcatgtttggtcgaaagtcagct 572
Query: 321 tcgtattgaacaca 334
|| ||||| |||||
Sbjct: 573 tcatattgcacaca 586
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 239,515
Number of Sequences: 832831
Number of extensions: 239515
Number of successful extensions: 63191
Number of sequences better than 0.5: 134
Number of HSP's better than 0.5 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62900
Number of HSP's gapped (non-prelim): 267
length of query: 1135
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1115
effective length of database: 474,703,049
effective search space: 529293899635
effective search space used: 529293899635
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)