BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440503.2.1
(542 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW090590.1|CW090590 104_436_10949365_116_32610_055 Sorgh... 856 0.0
gb|CW441132.1|CW441132 fsbb001f160c04f0 Sorghum methylation... 835 0.0
gb|CN136631.1|CN136631 OX1_44_H06.b1_A002 Oxidatively-stres... 833 0.0
gb|BE356658.1|BE356658 DG1_12_A04.b1_A002 Dark Grown 1 (DG1... 783 0.0
gb|CW468044.1|CW468044 fsbb001f219p23f0 Sorghum methylation... 781 0.0
gb|BF586531.1|BF586531 FM1_29_D03.g1_A003 Floral-Induced Me... 704 0.0
gb|BG158516.1|BG158516 RHIZ2_41_D05.g1_A003 Rhizome2 (RHIZ2... 704 0.0
gb|CN140560.1|CN140560 OX1_45_D03.b1_A002 Oxidatively-stres... 678 0.0
gb|BG158526.1|BG158526 RHIZ2_41_E06.g1_A003 Rhizome2 (RHIZ2... 593 e-168
gb|BE356825.1|BE356825 DG1_12_A04.g1_A002 Dark Grown 1 (DG1... 385 e-105
gb|BG947074.1|BG947074 IP1_2_C07.b1_A002 Immature pannicle ... 180 9e-044
gb|CW470463.1|CW470463 fsbb001f223k20k0 Sorghum methylation... 70 2e-010
gb|CL185113.1|CL185113 104_398_10899301_114_32368_049 Sorgh... 66 4e-009
gb|CL185114.1|CL185114 104_398_10899301_116_32372_049 Sorgh... 66 4e-009
gb|CW364257.1|CW364257 fsbb001f036d15k0 Sorghum methylation... 66 4e-009
gb|CW397495.1|CW397495 fsbb001f086h12f0 Sorghum methylation... 66 4e-009
gb|CW476771.1|CW476771 fsbb001f233m10k0 Sorghum methylation... 66 4e-009
gb|CW345632.1|CW345632 104_848_11488598_116_36212_051 Sorgh... 64 1e-008
gb|CF485676.1|CF485676 POL1_33_A02.b1_A002 Pollen Sorghum b... 64 1e-008
gb|CX614140.1|CX614140 GABR1_12_G05.b1_A002 GA- or brassino... 64 1e-008
gb|CL157799.1|CL157799 104_346_10803072_114_31375_048 Sorgh... 60 2e-007
gb|CL157800.1|CL157800 104_346_10803072_116_31376_048 Sorgh... 60 2e-007
gb|CW155010.1|CW155010 104_557_11145906_148_36357_073 Sorgh... 60 2e-007
gb|CW281091.1|CW281091 104_756_11407983_116_35449_054 Sorgh... 60 2e-007
gb|CW345633.1|CW345633 104_848_11488598_148_36211_051 Sorgh... 60 2e-007
gb|CW404456.1|CW404456 fsbb001f096j16k0 Sorghum methylation... 60 2e-007
gb|BE358348.1|BE358348 DG1_29_F09.b1_A002 Dark Grown 1 (DG1... 60 2e-007
gb|CW064569.1|CW064569 104_310_10522641_114_30141 Sorghum m... 58 9e-007
gb|BE361790.1|BE361790 DG1_82_D05.b1_A002 Dark Grown 1 (DG1... 58 9e-007
gb|AW922366.1|AW922366 DG1_18_D08.g1_A002 Dark Grown 1 (DG1... 52 5e-005
gb|CW304188.1|CW304188 104_789_11465649_148_35707_047 Sorgh... 50 2e-004
gb|CW331377.1|CW331377 104_828_11480870_148_36025_053 Sorgh... 50 2e-004
gb|CW444766.1|CW444766 fsbb001f166i15f0 Sorghum methylation... 50 2e-004
gb|CW025964.1|CW025964 104_227_10488498_114_30506 Sorghum m... 44 0.013
gb|CW248758.1|CW248758 104_710_11222473_116_35039_011 Sorgh... 44 0.013
gb|CW390390.1|CW390390 fsbb001f076a11k0 Sorghum methylation... 44 0.013
gb|CW098312.1|CW098312 104_464_11002937_116_34362_067 Sorgh... 42 0.052
gb|CW128081.1|CW128081 104_509_11113805_116_34746_023 Sorgh... 42 0.052
gb|CW203146.1|CW203146 104_629_11185474_148_36909_037 Sorgh... 42 0.052
gb|CW234878.1|CW234878 104_690_11214674_116_37408_015 Sorgh... 42 0.052
gb|CW298775.1|CW298775 104_781_11462754_116_35659_071 Sorgh... 42 0.052
gb|CW298776.1|CW298776 104_781_11462754_148_35655_071 Sorgh... 42 0.052
gb|CW380319.1|CW380319 fsbb001f061a24k0 Sorghum methylation... 42 0.052
gb|CL160380.1|CL160380 104_351_10804946_116_31825_002 Sorgh... 40 0.21
gb|CW048908.1|CW048908 104_287_10513703_114_30211 Sorghum m... 40 0.21
gb|CW189594.1|CW189594 104_610_11174046_148_37103_017 Sorgh... 40 0.21
gb|CW245962.1|CW245962 104_706_11221161_148_35074_033 Sorgh... 40 0.21
gb|CW245963.1|CW245963 104_706_11221161_148_37594_033 Sorgh... 40 0.21
gb|CW250978.1|CW250978 104_713_11223678_148_35061_025 Sorgh... 40 0.21
gb|CW273692.1|CW273692 104_746_11404035_148_35366_010 Sorgh... 40 0.21
gb|CW380195.1|CW380195 fsbb001f059n24k0 Sorghum methylation... 40 0.21
gb|CW397496.1|CW397496 fsbb001f086h12k0 Sorghum methylation... 40 0.21
gb|CW403515.1|CW403515 fsbb001f095e10f0 Sorghum methylation... 40 0.21
gb|CW472739.1|CW472739 fsbb001f227n02f0 Sorghum methylation... 40 0.21
gb|AW286698.2|AW286698 LG1_204_B11.b1_A002 Light Grown 1 (L... 40 0.21
gb|AW672490.1|AW672490 LG1_360_H08.b1_A002 Light Grown 1 (L... 40 0.21
gb|AF488412.1| Sorghum bicolor BAC 131L1, complete sequence 40 0.21
gb|AC169376.1| Sorghum bicolor clone SB_BBc0046M17, WORKING... 40 0.21
>gb|CW090590.1|CW090590 104_436_10949365_116_32610_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10949365, DNA
sequence
Length = 675
Score = 856 bits (432), Expect = 0.0
Identities = 512/538 (95%), Gaps = 3/538 (0%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 545 tgcgcgccgacccagccacggggtaccccggccggacgtaccggttctaccgcgggccga 486
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgcttcgccacga 120
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 485 ccgtgttcaacttcggctacggcctcagctactccaagtactcccaccgcttcgtcacga 426
Query: 121 agccgcctcccac---gagcaacgtcgccggccttaaggcggtggaggcaacggcgggcg 177
|||| || ||| | |||||||||||||||| | |||||| ||| | | ||||||||||
Sbjct: 425 agcccccgccctccatgagcaacgtcgccggcttgaaggcgctggcgacgacggcgggcg 366
Query: 178 gcatggcgagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcc 237
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gcgtggcgacctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcc 306
Query: 238 cggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgt 297
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 305 cggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcacccggtgctggtgt 246
Query: 298 tcatgcgctggcccaacgcgacggacggcagcggccggccggccagccagctgatcgggt 357
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 245 tcctgcgctggcccaacgcgacggacggcagcggccggccggccagacagctgatcgggt 186
Query: 358 tccagagcctgcacctgagggcgacgcagacggcgcacgtggagttcgaggtgagcccct 417
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tccagagcctgcacttgagggcgacgcagacggcgcacgtggagttcgaggtgagcccct 126
Query: 418 gcaagcacttcagccgggcgacggaggatggcaggaaggtgatcgatcagggctcgcact 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gcaagcacttcagccgggcgacggaggatggcaggaaggtgatcgatcagggctcgcact 66
Query: 478 tcgtgatggtcggcgaggatgagttcgagatgagcttcatggcgtgatcccggttgtg 535
|||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct: 65 tcgtgatggtcggcgacgacgagttcgagatgagcttcatggcatgatcccggttgtg 8
>gb|CW441132.1|CW441132 fsbb001f160c04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f160c04, DNA
sequence
Length = 579
Score = 835 bits (421), Expect = 0.0
Identities = 507/535 (94%), Gaps = 3/535 (0%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 535 tgcgcgccgacccagccacggggtaccccggccggacgtaccggttctaccgcgggccga 476
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgcttcgccacga 120
| |||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||
Sbjct: 475 ccgtgttcaacttcggctacggcctcaggtactccaagtactcccaccgcttcgtcagga 416
Query: 121 agccgcctcccac---gagcaacgtcgccggccttaaggcggtggaggcaacggcgggcg 177
|||| || ||| | |||||||||||||||| | |||||| ||| | | ||||||||||
Sbjct: 415 agcccccgccctccatgagcaacgtcgccggcttgaaggcgctggcgacgacggcgggcg 356
Query: 178 gcatggcgagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcc 237
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gcgtggcgacctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcc 296
Query: 238 cggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgt 297
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 295 cggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcacccggtgctggtgt 236
Query: 298 tcatgcgctggcccaacgcgacggacggcagcggccggccggccagccagctgatcgggt 357
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 235 tcctgcgctggcccaacgcgacggacggcagcggccggccggccagacagctgatcgggt 176
Query: 358 tccagagcctgcacctgagggcgacgcagacggcgcacgtggagttcgaggtgagcccct 417
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tccagagcctgcacttgagggcgacgcagacggcgcacgtggagttcgaggtgagcccct 116
Query: 418 gcaagcacttcagccgggcgacggaggatggcaggaaggtgatcgatcagggctcgcact 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 gcaagcacttcagccgggcgacggaggatggcaggaaggtgatcgatcagggctcgcact 56
Query: 478 tcgtgatggtcggcgaggatgagttcgagatgagcttcatggcgtgatcccggtt 532
|||||||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct: 55 tcgtgatggtcggcgacgacgagttcgagatgagcttcatggcatgatcccggtt 1
>gb|CN136631.1|CN136631 OX1_44_H06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_44_H06_A002 3', mRNA sequence
Length = 772
Score = 833 bits (420), Expect = 0.0
Identities = 497/522 (95%), Gaps = 3/522 (0%)
Strand = Plus / Plus
Query: 17 cacgggctaccccggccggacgtaccggttctaccgcggcccgacagtgttcaacttcgg 76
|||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 1 cacggggtaccccggccggacgtaccggttctaccgcgggccgaccgtgttcaacttcgg 60
Query: 77 ctacggcctcagctactccaagtactcccaccgcttcgccacgaagccgcctcccac--- 133
|||||||||||||||||||||||||||||||||||||| ||||||||| || ||| |
Sbjct: 61 ctacggcctcagctactccaagtactcccaccgcttcgtcacgaagcccccgccctccat 120
Query: 134 gagcaacgtcgccggccttaaggcggtggaggcaacggcgggcggcatggcgagctacga 193
|||||||||||||||| | |||||| ||| | | |||||||||||| |||||| ||||||
Sbjct: 121 gagcaacgtcgccggcttgaaggcgctggcgacgacggcgggcggcgtggcgacctacga 180
Query: 194 cgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggtggtgcgggt 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggtggtgcgggt 240
Query: 254 gcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcgctggcccaa 313
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 241 gcagaaccacgggcccatggacgggaagcacccggtgctggtgttcctgcgctggcccaa 300
Query: 314 cgcgacggacggcagcggccggccggccagccagctgatcgggttccagagcctgcacct 373
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 301 cgcgacggacggcagcggccggccggccagacagctgatcgggttccagagcctgcactt 360
Query: 374 gagggcgacgcagacggcgcacgtggagttcgaggtgagcccctgcaagcacttcagccg 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gagggcgacgcagacggcgcacgtggagttcgaggtgagcccctgcaagcacttcagccg 420
Query: 434 ggcgacggaggatggcaggaaggtgatcgatcagggctcgcacttcgtgatggtcggcga 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggcgacggaggatggcaggaaggtgatcgatcagggctcgcacttcgtgatggtcggcga 480
Query: 494 ggatgagttcgagatgagcttcatggcgtgatcccggttgtg 535
|| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 481 cgacgagttcgagatgagcttcatggcatgatcccggttgtg 522
>gb|BE356658.1|BE356658 DG1_12_A04.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 513
Score = 783 bits (395), Expect = 0.0
Identities = 473/497 (95%), Gaps = 4/497 (0%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 16 tgcgcgccgacccagccacggggtaccccggccggacgtaccggttctaccgcgggccga 75
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgcttcgccacga 120
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 76 ccgtgttcaacttcggctacggcctcagctactccaagtactcccaccgcttcgtcacga 135
Query: 121 agccgcctcccac---gagcaacgtcgccggccttaaggcggtggaggcaacggcgggcg 177
|||| || ||| | |||||||||||||||| | |||||| ||| | | ||||||||||
Sbjct: 136 agcccccgccctccatgagcaacgtcgccggcttgaaggcgctggcgacgacggcgggcg 195
Query: 178 gcatggcgagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcc 237
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gcgtggcgacctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcc 255
Query: 238 cggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcactc-ggtgctggtg 296
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 256 cggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcacgccggtgctggtg 315
Query: 297 ttcatgcgctggcccaacgcgacggacggcagcggccggccggccagccagctgatcggg 356
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 316 ttcctgcgctggcccaacgcgacggacggcagcggccggccggccagacagctgatcggg 375
Query: 357 ttccagagcctgcacctgagggcgacgcagacggcgcacgtggagttcgaggtgagcccc 416
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttccagagcctgcacttgagggcgacgcagacggcgcacgtggagttcgaggtgagcccc 435
Query: 417 tgcaagcacttcagccgggcgacggaggatggcaggaaggtgatcgatcagggctcgcac 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgcaagcacttcagccgggcgacggaggatggcaggaaggtgatcgatcagggctcgcac 495
Query: 477 ttcgtgatggtcggcga 493
|||||||||||||||||
Sbjct: 496 ttcgtgatggtcggcga 512
>gb|CW468044.1|CW468044 fsbb001f219p23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f219p23, DNA
sequence
Length = 509
Score = 781 bits (394), Expect = 0.0
Identities = 471/496 (94%), Gaps = 3/496 (0%)
Strand = Plus / Minus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||| ||||||| |||||||| ||||||| |||||||||||||||||||||||| ||||
Sbjct: 504 tgcgccccgacccagccacggggtaccccgcccggacgtaccggttctaccgcgggccga 445
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgcttcgccacga 120
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 444 ccgtgttcaacttcggctacggcctcagctactccaagtactcccaccgcttcgtcacga 385
Query: 121 agccgcctcccac---gagcaacgtcgccggccttaaggcggtggaggcaacggcgggcg 177
|||| || ||| | |||||||||||||||| | |||||| ||| | | ||||||||||
Sbjct: 384 agcccccgccctccatgagcaacgtcgccggcttgaaggcgctggcgacgacggcgggcg 325
Query: 178 gcatggcgagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcc 237
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcgtggcgacctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagttcc 265
Query: 238 cggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgt 297
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 264 cggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcacccggtgctggtgt 205
Query: 298 tcatgcgctggcccaacgcgacggacggcagcggccggccggccagccagctgatcgggt 357
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 204 tcctgcgctggcccaacgcgacggacggcagcggccggccggccagacagctgatcgggt 145
Query: 358 tccagagcctgcacctgagggcgacgcagacggcgcacgtggagttcgaggtgagcccct 417
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 tccagagcctgcacttgagggcgacgcagacggcgcacgtggagttcgaggtgagcccct 85
Query: 418 gcaagcacttcagccgggcgacggaggatggcaggaaggtgatcgatcagggctcgcact 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 gcaagcacttcagccgggcgacggaggatggcaggaaggtgatcgatcagggctcgcact 25
Query: 478 tcgtgatggtcggcga 493
||||||||||||||||
Sbjct: 24 tcgtgatggtcggcga 9
>gb|BF586531.1|BF586531 FM1_29_D03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 449
Score = 704 bits (355), Expect = 0.0
Identities = 423/445 (95%), Gaps = 3/445 (0%)
Strand = Plus / Plus
Query: 79 acggcctcagctactccaagtactcccaccgcttcgccacgaagccgcctcccac---ga 135
|||||||||||||||||||||||||||||||||||| | ||||||| || ||| | ||
Sbjct: 1 acggcctcagctactccaagtactcccaccgcttcgtctcgaagcccccgccctccatga 60
Query: 136 gcaacgtcgccggccttaaggcggtggaggcaacggcgggcggcatggcgagctacgacg 195
|||||||||||||| | |||||| ||| | | |||||||||||| |||||| ||||||||
Sbjct: 61 gcaacgtcgccggcttgaaggcgctggcgacgacggcgggcggcgtggcgacctacgacg 120
Query: 196 tggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggtggtgcgggtgc 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggaggcgatcgggtcggagacgtgcgaccggctcaagttcccggcggtggtgcgggtgc 180
Query: 256 agaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcgctggcccaacg 315
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 181 agaaccacgggcccatggacgggaagcacccggtgctggtgttcctgcgctggcccaacg 240
Query: 316 cgacggacggcagcggccggccggccagccagctgatcgggttccagagcctgcacctga 375
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 241 cgacggacggcagcggccggccggccagacagctgatcgggttccagagcctgcacttga 300
Query: 376 gggcgacgcagacggcgcacgtggagttcgaggtgagcccctgcaagcacttcagccggg 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gggcgacgcagacggcgcacgtggagttcgaggtgagcccctgcaagcacttcagccggg 360
Query: 436 cgacggaggatggcaggaaggtgatcgatcagggctcgcacttcgtgatggtcggcgagg 495
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 361 cgacggaggacggcaggaaggtgatcgatcagggctcgcacttcgtgatggtcggcgacg 420
Query: 496 atgagttcgagatgagcttcatggc 520
|||||||||||||||||||||||||
Sbjct: 421 atgagttcgagatgagcttcatggc 445
>gb|BG158516.1|BG158516 RHIZ2_41_D05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 456
Score = 704 bits (355), Expect = 0.0
Identities = 426/449 (94%), Gaps = 3/449 (0%)
Strand = Plus / Plus
Query: 89 ctactccaagtactcccaccgcttcgccacgaagccgcctcccac---gagcaacgtcgc 145
|||||||||||||||||||||||||| | ||||||| || ||| | ||||||||||||
Sbjct: 1 ctactccaagtactcccaccgcttcgtctcgaagcccccgccctccatgagcaacgtcgc 60
Query: 146 cggccttaaggcggtggaggcaacggcgggcggcatggcgagctacgacgtggaggcgat 205
|||| | |||||| ||| | | |||||||||||| |||||| ||||||||||||||||||
Sbjct: 61 cggcttgaaggcgctggcgacgacggcgggcggcgtggcgacctacgacgtggaggcgat 120
Query: 206 cgggtcggagacgtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgggtcggagacgtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgg 180
Query: 266 gcccatggacgggaagcactcggtgctggtgttcatgcgctggcccaacgcgacggacgg 325
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 181 gcccatggacgggaagcacccggtgctggtgttcctgcgctggcccaacgcgacggacgg 240
Query: 326 cagcggccggccggccagccagctgatcgggttccagagcctgcacctgagggcgacgca 385
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 241 cagcggccggccggccagacagctgatcgggttccagagcctgcacttgagggcgacgca 300
Query: 386 gacggcgcacgtggagttcgaggtgagcccctgcaagcacttcagccgggcgacggagga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gacggcgcacgtggagttcgaggtgagcccctgcaagcacttcagccgggcgacggagga 360
Query: 446 tggcaggaaggtgatcgatcagggctcgcacttcgtgatggtcggcgaggatgagttcga 505
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 361 cggcaggaaggtgatcgatcagggctcgcacttcgtgatggtcggcgacgatgagttcga 420
Query: 506 gatgagcttcatggcgtgatcccggttgt 534
||||||||||||||| |||||||||||||
Sbjct: 421 gatgagcttcatggcatgatcccggttgt 449
>gb|CN140560.1|CN140560 OX1_45_D03.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_45_D03_A002 3', mRNA sequence
Length = 614
Score = 678 bits (342), Expect = 0.0
Identities = 422/448 (94%), Gaps = 3/448 (0%)
Strand = Plus / Plus
Query: 91 actccaagtactcccaccgcttcgccacgaagccgcctcccac---gagcaacgtcgccg 147
|||||||||||||||||||||| | || |||||| || ||| | ||||||||||||||
Sbjct: 1 actccaagtactcccaccgcttggtcaggaagcccccgccctccatgagcaacgtcgccg 60
Query: 148 gccttaaggcggtggaggcaacggcgggcggcatggcgagctacgacgtggaggcgatcg 207
|| | |||||| ||| | | |||||||||||| |||||| |||||||||||||||||||
Sbjct: 61 gcttgaaggcgctggcgacgacggcgggcggcgtggcgacttacgacgtggaggcgatcg 120
Query: 208 ggtcggagacgtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggc 267
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggttggagacgtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggc 180
Query: 268 ccatggacgggaagcactcggtgctggtgttcatgcgctggcccaacgcgacggacggca 327
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 181 ccatggacgggaagcacccggtgctggtgttcctgcgctggcccaacgcgacggacggca 240
Query: 328 gcggccggccggccagccagctgatcgggttccagagcctgcacctgagggcgacgcaga 387
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 241 gcggccggccggccagacagctgatcgggttccagagcctgcacttgagggcgacgcaga 300
Query: 388 cggcgcacgtggagttcgaggtgagcccctgcaagcacttcagccgggcgacggaggatg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cggcgcacgtggagttcgaggtgagcccctgcaagcacttcagccgggcgacggaggatg 360
Query: 448 gcaggaaggtgatcgatcagggctcgcacttcgtgatggtcggcgaggatgagttcgaga 507
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 361 gcaggaaggtgatcgatcagggctcgcacttcgtgatggtcggcgacgacgagttcgaga 420
Query: 508 tgagcttcatggcgtgatcccggttgtg 535
||||||||||||| ||||||||||||||
Sbjct: 421 tgagcttcatggcatgatcccggttgtg 448
>gb|BG158526.1|BG158526 RHIZ2_41_E06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 350
Score = 593 bits (299), Expect = e-168
Identities = 336/347 (96%), Gaps = 1/347 (0%)
Strand = Plus / Plus
Query: 175 gcggcatggcgagctacgacgtggaggcgatcgggtcggagacgtgcgaccggctcaagt 234
||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 gcggcgtggcgacctacgacgtggaggcgatcgggtcggacacgtgcgaccggctcaagt 60
Query: 235 tcccggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcactcggtgctgg 294
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 61 tcccggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcacccggtgatgg 120
Query: 295 tgttcatgcgctggcccaacgcgacggacggcagcggccggccggccagccagctgatcg 354
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 121 tgttcctgcgctggcccaacgcgacggacggcagcggccggccggccagacagctgatcg 180
Query: 355 ggttccagagcctgcacctgagggcgacgcaga-cggcgcacgtggagttcgaggtgagc 413
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 181 ggttccagagcctgcacttgagggcgacgcagatcggcgcacgtggagttcgaggtgagc 240
Query: 414 ccctgcaagcacttcagccgggcgacggaggatggcaggaaggtgatcgatcagggctcg 473
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 241 ccctgcaagcacttcagccgggcgacggaggacggcaggaaggtgatcgatcagggctcg 300
Query: 474 cacttcgtgatggtcggcgaggatgagttcgagatgagcttcatggc 520
|||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 301 cacttcgtgatggtcggcgacgatgagttcgagatgagcttcatggc 347
>gb|BE356825.1|BE356825 DG1_12_A04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 210
Score = 385 bits (194), Expect = e-105
Identities = 206/210 (98%)
Strand = Plus / Plus
Query: 214 agacgtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatgg 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agacgtgcgaccggctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatgg 60
Query: 274 acgggaagcactcggtgctggtgttcatgcgctggcccaacgcgacggacggcagcggcc 333
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61 acgggaagcacccggtgctggtgttcctgcgctggcccaacgcgacggacggcagcggcc 120
Query: 334 ggccggccagccagctgatcgggttccagagcctgcacctgagggcgacgcagacggcgc 393
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 121 ggccggccagacagctgatcgggttccagagcctgcacttgagggcgacgcagacggcgc 180
Query: 394 acgtggagttcgaggtgagcccctgcaagc 423
||||||||||||||||||||||||||||||
Sbjct: 181 acgtggagttcgaggtgagcccctgcaagc 210
>gb|BG947074.1|BG947074 IP1_2_C07.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 454
Score = 180 bits (91), Expect = 9e-044
Identities = 144/161 (89%), Gaps = 3/161 (1%)
Strand = Plus / Plus
Query: 1 tgcgcgccgacccggccacgggctaccccggccggacgtaccggttctaccgcggcccga 60
||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct: 291 tgcgcgccgacccagccacggggtaccccggacggacgtaccggttctaccgcgggccga 350
Query: 61 cagtgttcaacttcggctacggcctcagctactccaagtactcccaccgcttcgccacga 120
| |||||| ||||||||||||| |||||||||||| |||||||||||||||||| |||||
Sbjct: 351 ccgtgttcgacttcggctacgggctcagctactccgagtactcccaccgcttcgtcacga 410
Query: 121 ag---ccgcctcccacgagcaacgtcgccggccttaaggcg 158
|| ||||| ||| |||||||||||||||| | ||||||
Sbjct: 411 agcccccgccctccatgagcaacgtcgccggcttgaaggcg 451
>gb|CW470463.1|CW470463 fsbb001f223k20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f223k20, DNA
sequence
Length = 470
Score = 69.9 bits (35), Expect = 2e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 255 cagaaccacgggcccatggacgggaagcactcggtgctg 293
|||||||||||||||||||||||||||||||||| ||||
Sbjct: 44 cagaaccacgggcccatggacgggaagcactcggcgctg 82
>gb|CL185113.1|CL185113 104_398_10899301_114_32368_049 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899301, DNA
sequence
Length = 638
Score = 65.9 bits (33), Expect = 4e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 255 cagaaccacgggcccatggacgggaagcactcggtgctggtgttc 299
||||||||||| |||||||||||||||||||||| |||| |||||
Sbjct: 519 cagaaccacggccccatggacgggaagcactcggcgctgatgttc 563
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 72 ttcggctacggcctcagctactcca 96
|||||||||||||||||||||||||
Sbjct: 327 ttcggctacggcctcagctactcca 351
>gb|CL185114.1|CL185114 104_398_10899301_116_32372_049 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899301, DNA
sequence
Length = 679
Score = 65.9 bits (33), Expect = 4e-009
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 255 cagaaccacgggcccatggacgggaagcactcggtgctggtgttc 299
||||||||||| |||||||||||||||||||||| |||| |||||
Sbjct: 609 cagaaccacggccccatggacgggaagcactcggcgctgatgttc 565
Score = 40.1 bits (20), Expect = 0.21
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 421 agcacttcagccgggcgacggaggatggcaggaaggtgatcgat 464
|||| |||||| ||| || || |||||||| |||||||||||||
Sbjct: 449 agcatttcagcagggtgagggcggatggcatgaaggtgatcgat 406
>gb|CW364257.1|CW364257 fsbb001f036d15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f036d15, DNA
sequence
Length = 713
Score = 65.9 bits (33), Expect = 4e-009
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 255 cagaaccacgggcccatggacgggaagcactcggtgctggtgttc 299
||||||||||| |||||||||||||||||||||| |||| |||||
Sbjct: 570 cagaaccacggccccatggacgggaagcactcggcgctgatgttc 526
Score = 40.1 bits (20), Expect = 0.21
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 421 agcacttcagccgggcgacggaggatggcaggaaggtgatcgat 464
|||| |||||| ||| || || |||||||| |||||||||||||
Sbjct: 410 agcatttcagcagggtgagggcggatggcatgaaggtgatcgat 367
>gb|CW397495.1|CW397495 fsbb001f086h12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f086h12, DNA
sequence
Length = 628
Score = 65.9 bits (33), Expect = 4e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 255 cagaaccacgggcccatggacgggaagcactcggtgctggtgttc 299
||||||||||| |||||||||||||||||||||| |||| |||||
Sbjct: 476 cagaaccacggccccatggacgggaagcactcggcgctgatgttc 520
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 72 ttcggctacggcctcagctactcca 96
|||||||||||||||||||||||||
Sbjct: 284 ttcggctacggcctcagctactcca 308
>gb|CW476771.1|CW476771 fsbb001f233m10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f233m10, DNA
sequence
Length = 561
Score = 65.9 bits (33), Expect = 4e-009
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 255 cagaaccacgggcccatggacgggaagcactcggtgctggtgttc 299
||||||||||| |||||||||||||||||||||| |||| |||||
Sbjct: 418 cagaaccacggccccatggacgggaagcactcggcgctgatgttc 374
Score = 40.1 bits (20), Expect = 0.21
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 421 agcacttcagccgggcgacggaggatggcaggaaggtgatcgat 464
|||| |||||| ||| || || |||||||| |||||||||||||
Sbjct: 258 agcatttcagcagggtgagggcggatggcatgaaggtgatcgat 215
>gb|CW345632.1|CW345632 104_848_11488598_116_36212_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488598, DNA
sequence
Length = 676
Score = 63.9 bits (32), Expect = 1e-008
Identities = 65/76 (85%)
Strand = Plus / Minus
Query: 251 ggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcgctggcc 310
|||||||||||||||||| || |||||||||||| ||| ||| ||||| | || |||||
Sbjct: 361 ggtgcagaaccacgggccaatcgacgggaagcacacggcgctcatgttcctccggtggcc 302
Query: 311 caacgcgacggacggc 326
|| |||||| ||||||
Sbjct: 301 cagcgcgaccgacggc 286
Score = 60.0 bits (30), Expect = 2e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 72 ttcggctacggcctcagctactccaagtactcccaccg 109
|||||||||||||||||||||||||||| ||| |||||
Sbjct: 546 ttcggctacggcctcagctactccaagttctctcaccg 509
>gb|CF485676.1|CF485676 POL1_33_A02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_33_A02_A002 3', mRNA sequence
Length = 529
Score = 63.9 bits (32), Expect = 1e-008
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 251 ggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcgctggcc 310
|||||||||||||||||| || |||||||||||| ||| ||| ||||| | || |||||
Sbjct: 150 ggtgcagaaccacgggccaatcgacgggaagcacacggcgctcatgttcctccggtggcc 209
Query: 311 caacgcgacggacggc 326
|| |||||| ||||||
Sbjct: 210 cagcgcgaccgacggc 225
>gb|CX614140.1|CX614140 GABR1_12_G05.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_12_G05_A002 3', mRNA sequence
Length = 677
Score = 63.9 bits (32), Expect = 1e-008
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 251 ggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcgctggcc 310
|||||||||||||||||| || |||||||||||| ||| ||| ||||| | || |||||
Sbjct: 329 ggtgcagaaccacgggccaatcgacgggaagcacacggcgctcatgttcctccggtggcc 388
Query: 311 caacgcgacggacggc 326
|| |||||| ||||||
Sbjct: 389 cagcgcgaccgacggc 404
Score = 60.0 bits (30), Expect = 2e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 72 ttcggctacggcctcagctactccaagtactcccaccg 109
|||||||||||||||||||||||||||| ||| |||||
Sbjct: 144 ttcggctacggcctcagctactccaagttctctcaccg 181
>gb|CL157799.1|CL157799 104_346_10803072_114_31375_048 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10803072, DNA
sequence
Length = 465
Score = 60.0 bits (30), Expect = 2e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 72 ttcggctacggcctcagctactccaagtactcccaccg 109
|||||||||||||||||||||||||||| ||| |||||
Sbjct: 346 ttcggctacggcctcagctactccaagttctctcaccg 383
>gb|CL157800.1|CL157800 104_346_10803072_116_31376_048 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10803072, DNA
sequence
Length = 465
Score = 60.0 bits (30), Expect = 2e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 72 ttcggctacggcctcagctactccaagtactcccaccg 109
|||||||||||||||||||||||||||| ||| |||||
Sbjct: 120 ttcggctacggcctcagctactccaagttctctcaccg 83
>gb|CW155010.1|CW155010 104_557_11145906_148_36357_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11145906, DNA
sequence
Length = 687
Score = 60.0 bits (30), Expect = 2e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 72 ttcggctacggcctcagctactccaagtactcccaccg 109
|||||||||||||||||||||||||||| ||| |||||
Sbjct: 59 ttcggctacggcctcagctactccaagttctctcaccg 22
>gb|CW281091.1|CW281091 104_756_11407983_116_35449_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407983, DNA
sequence
Length = 679
Score = 60.0 bits (30), Expect = 2e-007
Identities = 107/133 (80%), Gaps = 6/133 (4%)
Strand = Plus / Minus
Query: 227 gctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcactc 286
||||| ||||||||||| ||| ||||||||||||||| || |||||||| ||||||||
Sbjct: 215 gctcaggttcccggcggaggtcgaggtgcagaaccacggaccaatggacggcaagcactc 156
Query: 287 ggtgctggtgttcatgcgctggcccaacgcgacggacggcagcggccggccggccagcca 346
|| || ||||| | || |||||||| || ||||| |||||||||| |||||
Sbjct: 155 tgtcctcatgttcctccggtggcccaatgcaacgga------tggccggccggtgagcca 102
Query: 347 gctgatcgggttc 359
|||||||||||||
Sbjct: 101 gctgatcgggttc 89
Score = 48.1 bits (24), Expect = 8e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 72 ttcggctacggcctcagctactccaagt 99
||||| ||||||||||||||||||||||
Sbjct: 376 ttcggatacggcctcagctactccaagt 349
>gb|CW345633.1|CW345633 104_848_11488598_148_36211_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488598, DNA
sequence
Length = 607
Score = 60.0 bits (30), Expect = 2e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 72 ttcggctacggcctcagctactccaagtactcccaccg 109
|||||||||||||||||||||||||||| ||| |||||
Sbjct: 499 ttcggctacggcctcagctactccaagttctctcaccg 536
>gb|CW404456.1|CW404456 fsbb001f096j16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f096j16, DNA
sequence
Length = 728
Score = 60.0 bits (30), Expect = 2e-007
Identities = 107/133 (80%), Gaps = 6/133 (4%)
Strand = Plus / Plus
Query: 227 gctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcactc 286
||||| ||||||||||| ||| ||||||||||||||| || |||||||| ||||||||
Sbjct: 170 gctcaggttcccggcggaggtcgaggtgcagaaccacggaccaatggacggcaagcactc 229
Query: 287 ggtgctggtgttcatgcgctggcccaacgcgacggacggcagcggccggccggccagcca 346
|| || ||||| | || |||||||| || ||||| |||||||||| |||||
Sbjct: 230 tgtcctcatgttcctccggtggcccaatgcaacgga------tggccggccggtgagcca 283
Query: 347 gctgatcgggttc 359
|||||||||||||
Sbjct: 284 gctgatcgggttc 296
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 423 cacttcagccgggcgacggaggatggcaggaaggtgatcga 463
|||||||||||||||| || ||| |||| ||||||||||||
Sbjct: 360 cacttcagccgggcgagggcggacggcaagaaggtgatcga 400
Score = 48.1 bits (24), Expect = 8e-004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 ttcggctacggcctcagctactccaagt 99
||||| ||||||||||||||||||||||
Sbjct: 9 ttcggatacggcctcagctactccaagt 36
>gb|BE358348.1|BE358348 DG1_29_F09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 602
Score = 60.0 bits (30), Expect = 2e-007
Identities = 107/133 (80%), Gaps = 6/133 (4%)
Strand = Plus / Minus
Query: 227 gctcaagttcccggcggtggtgcgggtgcagaaccacgggcccatggacgggaagcactc 286
||||| ||||||||||| ||| ||||||||||||||| || |||||||| ||||||||
Sbjct: 546 gctcaggttcccggcggaggtcgaggtgcagaaccacggaccaatggacggcaagcactc 487
Query: 287 ggtgctggtgttcatgcgctggcccaacgcgacggacggcagcggccggccggccagcca 346
|| || ||||| | || |||||||| || ||||| |||||||||| |||||
Sbjct: 486 tgtcctcatgttcctccggtggcccaatgcaacgga------tggccggccggtgagcca 433
Query: 347 gctgatcgggttc 359
|||||||||||||
Sbjct: 432 gctgatcgggttc 420
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 423 cacttcagccgggcgacggaggatggcaggaaggtgatcga 463
|||||||||||||||| || ||| |||| ||||||||||||
Sbjct: 356 cacttcagccgggcgagggcggacggcaagaaggtgatcga 316
>gb|CW064569.1|CW064569 104_310_10522641_114_30141 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522641, DNA
sequence
Length = 692
Score = 58.0 bits (29), Expect = 9e-007
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 18 acgggctaccccggccggacgtaccggttctac 50
|||||||||||||||||||| ||||||||||||
Sbjct: 192 acgggctaccccggccggacataccggttctac 160
>gb|BE361790.1|BE361790 DG1_82_D05.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 574
Score = 58.0 bits (29), Expect = 9e-007
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 18 acgggctaccccggccggacgtaccggttctac 50
|||||||||||||||||||| ||||||||||||
Sbjct: 474 acgggctaccccggccggacataccggttctac 506
>gb|AW922366.1|AW922366 DG1_18_D08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 488
Score = 52.0 bits (26), Expect = 5e-005
Identities = 88/109 (80%), Gaps = 6/109 (5%)
Strand = Plus / Plus
Query: 251 ggtgcagaaccacgggcccatggacgggaagcactcggtgctggtgttcatgcgctggcc 310
||||||||||||||| || |||||||| |||||||| || || ||||| | || |||||
Sbjct: 2 ggtgcagaaccacggaccaatggacggcaagcactctgtcctcatgttcctccggtggcc 61
Query: 311 caacgcgacggacggcagcggccggccggccagccagctgatcgggttc 359
||| || ||||| |||||||||| ||||||||||||||||||
Sbjct: 62 caatgcaacgga------tggccggccggtgagccagctgatcgggttc 104
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 423 cacttcagccgggcgacggaggatggcaggaaggtgatcga 463
|||||||||||||||| || ||| |||| ||||||||||||
Sbjct: 168 cacttcagccgggcgagggcggacggcaagaaggtgatcga 208
>gb|CW304188.1|CW304188 104_789_11465649_148_35707_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465649, DNA
sequence
Length = 556
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 71 cttcggctacggcctcagctactccaagt 99
|||||||||||||||||||||| ||||||
Sbjct: 357 cttcggctacggcctcagctacaccaagt 385
>gb|CW331377.1|CW331377 104_828_11480870_148_36025_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480870, DNA
sequence
Length = 653
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 71 cttcggctacggcctcagctactccaagt 99
|||||||||||||||||||||| ||||||
Sbjct: 229 cttcggctacggcctcagctacaccaagt 257
>gb|CW444766.1|CW444766 fsbb001f166i15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f166i15, DNA
sequence
Length = 561
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 71 cttcggctacggcctcagctactccaagt 99
|||||||||||||||||||||| ||||||
Sbjct: 281 cttcggctacggcctcagctacaccaagt 309
>gb|CW025964.1|CW025964 104_227_10488498_114_30506 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10488498, DNA
sequence
Length = 653
Score = 44.1 bits (22), Expect = 0.013
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 21 ggctaccccggccggacgtaccggttctaccgcggccc 58
||||||||||||||||| ||| ||||||| |||||||
Sbjct: 557 ggctaccccggccggacctacaagttctacggcggccc 594
>gb|CW248758.1|CW248758 104_710_11222473_116_35039_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222473, DNA
sequence
Length = 691
Score = 44.1 bits (22), Expect = 0.013
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 21 ggctaccccggccggacgtaccggttctaccgcggccc 58
||||||||||||||||| ||| ||||||| |||||||
Sbjct: 642 ggctaccccggccggacctacaagttctacggcggccc 679
>gb|CW390390.1|CW390390 fsbb001f076a11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f076a11, DNA
sequence
Length = 598
Score = 44.1 bits (22), Expect = 0.013
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 21 ggctaccccggccggacgtaccggttctaccgcggccc 58
||||||||||||||||| ||| ||||||| |||||||
Sbjct: 235 ggctaccccggccggacctacaagttctacggcggccc 198
>gb|CW098312.1|CW098312 104_464_11002937_116_34362_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002937, DNA
sequence
Length = 705
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 328 gcggccggccggccagccagc 348
|||||||||||||||||||||
Sbjct: 174 gcggccggccggccagccagc 154
>gb|CW128081.1|CW128081 104_509_11113805_116_34746_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11113805, DNA
sequence
Length = 638
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 328 gcggccggccggccagccagc 348
|||||||||||||||||||||
Sbjct: 117 gcggccggccggccagccagc 137
>gb|CW203146.1|CW203146 104_629_11185474_148_36909_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11185474, DNA
sequence
Length = 594
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 328 gcggccggccggccagccagc 348
|||||||||||||||||||||
Sbjct: 477 gcggccggccggccagccagc 497
>gb|CW234878.1|CW234878 104_690_11214674_116_37408_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11214674, DNA
sequence
Length = 765
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 328 gcggccggccggccagccagc 348
|||||||||||||||||||||
Sbjct: 154 gcggccggccggccagccagc 134
>gb|CW298775.1|CW298775 104_781_11462754_116_35659_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462754, DNA
sequence
Length = 708
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 328 gcggccggccggccagccagc 348
|||||||||||||||||||||
Sbjct: 355 gcggccggccggccagccagc 375
>gb|CW298776.1|CW298776 104_781_11462754_148_35655_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462754, DNA
sequence
Length = 661
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 328 gcggccggccggccagccagc 348
|||||||||||||||||||||
Sbjct: 459 gcggccggccggccagccagc 439
>gb|CW380319.1|CW380319 fsbb001f061a24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f061a24, DNA
sequence
Length = 513
Score = 42.1 bits (21), Expect = 0.052
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 328 gcggccggccggccagccagc 348
|||||||||||||||||||||
Sbjct: 264 gcggccggccggccagccagc 284
>gb|CL160380.1|CL160380 104_351_10804946_116_31825_002 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804946, DNA
sequence
Length = 720
Score = 40.1 bits (20), Expect = 0.21
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 323 cggcagcggccggccggccagccagctgatcg 354
||||| ||||||||||||| |||| |||||||
Sbjct: 410 cggcaccggccggccggccggccacctgatcg 441
>gb|CW048908.1|CW048908 104_287_10513703_114_30211 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513703, DNA
sequence
Length = 642
Score = 40.1 bits (20), Expect = 0.21
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 323 cggcagcggccggccggccagccagctgatcg 354
||||| ||||||||||||| |||| |||||||
Sbjct: 173 cggcaccggccggccggccggccacctgatcg 142
>gb|CW189594.1|CW189594 104_610_11174046_148_37103_017 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174046, DNA
sequence
Length = 613
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 329 cggccggccggccagccagc 348
||||||||||||||||||||
Sbjct: 83 cggccggccggccagccagc 64
>gb|CW245962.1|CW245962 104_706_11221161_148_35074_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221161, DNA
sequence
Length = 692
Score = 40.1 bits (20), Expect = 0.21
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 323 cggcagcggccggccggccagccagctgatcg 354
||||| ||||||||||||| |||| |||||||
Sbjct: 338 cggcaccggccggccggccggccacctgatcg 369
>gb|CW245963.1|CW245963 104_706_11221161_148_37594_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221161, DNA
sequence
Length = 690
Score = 40.1 bits (20), Expect = 0.21
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 323 cggcagcggccggccggccagccagctgatcg 354
||||| ||||||||||||| |||| |||||||
Sbjct: 338 cggcaccggccggccggccggccacctgatcg 369
>gb|CW250978.1|CW250978 104_713_11223678_148_35061_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11223678, DNA
sequence
Length = 656
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 329 cggccggccggccagccagc 348
||||||||||||||||||||
Sbjct: 230 cggccggccggccagccagc 211
>gb|CW273692.1|CW273692 104_746_11404035_148_35366_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404035, DNA
sequence
Length = 688
Score = 40.1 bits (20), Expect = 0.21
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 323 cggcagcggccggccggccagccagctgatcg 354
||||| ||||||||||||| |||| |||||||
Sbjct: 370 cggcaccggccggccggccggccacctgatcg 339
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 160,688
Number of Sequences: 832831
Number of extensions: 160688
Number of successful extensions: 50738
Number of sequences better than 0.5: 58
Number of HSP's better than 0.5 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50554
Number of HSP's gapped (non-prelim): 166
length of query: 542
length of database: 491,359,669
effective HSP length: 19
effective length of query: 523
effective length of database: 475,535,880
effective search space: 248705265240
effective search space used: 248705265240
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)