BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440450.2.1
(1291 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF489433.1|CF489433 POL1_57_C05.g1_A002 Pollen Sorghum b... 609 e-172
gb|CD429950.1|CD429950 ETH1_16_E08.g1_A002 Ethylene-treated... 597 e-168
gb|BG050940.1|BG050940 FM1_54_C02.b1_A003 Floral-Induced Me... 464 e-128
gb|BG357036.1|BG357036 OV2_9_B07.b1_A002 Ovary 2 (OV2) Sorg... 452 e-125
gb|AW671557.1|AW671557 LG1_348_C04.b1_A002 Light Grown 1 (L... 446 e-123
gb|BF704701.1|BF704701 FM1_50_D07.b1_A003 Floral-Induced Me... 408 e-112
gb|BE358484.1|BE358484 DG1_30_C01.b1_A002 Dark Grown 1 (DG1... 391 e-106
gb|CD221869.1|CD221869 CCC1_71_C03.g1_A007 Callus culture/c... 347 2e-093
gb|AW565713.1|AW565713 LG1_348_C04.g1_A002 Light Grown 1 (L... 238 1e-060
gb|BE358672.1|BE358672 DG1_30_C01.g1_A002 Dark Grown 1 (DG1... 238 1e-060
gb|BG356721.1|BG356721 OV2_9_B07.g1_A002 Ovary 2 (OV2) Sorg... 238 1e-060
gb|CD429902.1|CD429902 ETH1_16_E08.b1_A002 Ethylene-treated... 238 1e-060
gb|CF489351.1|CF489351 POL1_57_C05.b1_A002 Pollen Sorghum b... 238 1e-060
gb|BG051259.1|BG051259 FM1_54_C02.g1_A003 Floral-Induced Me... 226 4e-057
gb|CD221848.1|CD221848 CCC1_71_C03.b1_A007 Callus culture/c... 182 5e-044
gb|CN141018.1|CN141018 OX1_48_G07.g1_A002 Oxidatively-stres... 163 5e-038
gb|CW059223.1|CW059223 104_302_10519191_114_30162 Sorghum m... 161 2e-037
gb|CW334247.1|CW334247 104_832_11482399_116_36051_022 Sorgh... 161 2e-037
gb|CW334248.1|CW334248 104_832_11482399_148_36052_022 Sorgh... 161 2e-037
gb|CW389606.1|CW389606 fsbb001f074o02k0 Sorghum methylation... 161 2e-037
gb|CW488377.1|CW488377 fsbb001f254m01k0 Sorghum methylation... 161 2e-037
gb|CW488376.1|CW488376 fsbb001f254m01f0 Sorghum methylation... 157 3e-036
gb|CW270921.1|CW270921 104_742_11402710_116_35331_081 Sorgh... 137 3e-030
gb|CW422138.1|CW422138 fsbb001f131e11f0 Sorghum methylation... 137 3e-030
gb|CW483873.1|CW483873 fsbb001f245l15k0 Sorghum methylation... 137 3e-030
gb|CW059224.1|CW059224 104_302_10519191_115_30168 Sorghum m... 135 1e-029
gb|CW389605.1|CW389605 fsbb001f074o02f0 Sorghum methylation... 135 1e-029
gb|CW233917.1|CW233917 104_687_11213701_116_37381_057 Sorgh... 117 3e-024
gb|BF506856.1|BF506856 10005P-17b Pooled green leaf and roo... 98 2e-018
gb|CW350694.1|CW350694 fsbb001f012c03k0 Sorghum methylation... 88 2e-015
gb|CW483872.1|CW483872 fsbb001f245l15f0 Sorghum methylation... 80 6e-013
gb|CN140945.1|CN140945 OX1_48_G07.b1_A002 Oxidatively-stres... 76 9e-012
gb|CL156942.1|CL156942 104_344_10783210_114_31373_154 Sorgh... 54 3e-005
gb|CW069807.1|CW069807 104_319_10526104_5_30099 Sorghum met... 54 3e-005
gb|BZ349848.1|BZ349848 hr46e07.g1 WGS-SbicolorF (JM107 adap... 44 0.032
gb|CW212202.1|CW212202 104_643_11190899_116_37022_044 Sorgh... 44 0.032
gb|CW212203.1|CW212203 104_643_11190899_148_37023_044 Sorgh... 44 0.032
gb|BZ330123.1|BZ330123 hv90b07.g1 WGS-SbicolorF (JM107 adap... 40 0.50
gb|BZ335145.1|BZ335145 hx95g09.b1 WGS-SbicolorF (JM107 adap... 40 0.50
gb|CL188856.1|CL188856 104_405_10901881_116_32456_005 Sorgh... 40 0.50
gb|CW144269.1|CW144269 104_536_11137853_116_34966_025 Sorgh... 40 0.50
gb|CW144270.1|CW144270 104_536_11137853_148_34962_025 Sorgh... 40 0.50
gb|CW188151.1|CW188151 104_607_11172875_148_36722_034 Sorgh... 40 0.50
gb|CW191688.1|CW191688 104_613_11178627_116_36935_002 Sorgh... 40 0.50
gb|CW191689.1|CW191689 104_613_11178627_148_36936_002 Sorgh... 40 0.50
gb|CW254765.1|CW254765 104_719_11225855_148_35128_096 Sorgh... 40 0.50
gb|BF481603.1|BF481603 FM1_20_B03.g1_A003 Floral-Induced Me... 40 0.50
>gb|CF489433.1|CF489433 POL1_57_C05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_57_C05_A002 5', mRNA sequence
Length = 706
Score = 609 bits (307), Expect = e-172
Identities = 442/487 (90%)
Strand = Plus / Minus
Query: 662 tccatatgcacctgaatgcagtgcagaaagtgacaggttatttcattgaagtttgtcaca 721
|||| |||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct: 591 tccagatgcacctgaatgcagtgcagaaagtgatggggtatttcattgaagtctgtcaca 532
Query: 722 cgccgcacagcataggcaactacatggcgctttccttgaaaacctttcaaaccgccaatg 781
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 531 cgccgcacagagtaggcaactatatggcgctttccttgaaaacctttcaaaccgccattg 472
Query: 782 actatgacatagttctcgttattagcatcagccatctccttagcatcggaagcctcattt 841
||||| ||||||| | ||| ||| |||||||||| |||||||| ||||||| |||||||
Sbjct: 471 actataacatagtccccgtcattgacatcagccatttccttagcgtcggaagactcattt 412
Query: 842 tcccagcgattcacatctatcttgccagtaccatcatcaagagtgaatacaacatctgtg 901
||||| |||||||||||||||||||| |||||||||| |||||||||| ||||||||||
Sbjct: 411 tcccaacgattcacatctatcttgccggtaccatcatgaagagtgaattgaacatctgtg 352
Query: 902 acacgctcaaccttacctagcatgcgtccaacaagcctaatcgtagacacctcaacgccg 961
||||| | ||||||| | |||||||||||||||||||| ||| |||||||||||||||
Sbjct: 351 acacggtgaaccttattcaacatgcgtccaacaagcctaaccgtggacacctcaacgccg 292
Query: 962 ttgatggcgaaattagacctgtcaccgctggtttgcgccgcgtccatggtctgtttcacg 1021
| ||||||||||||||| ||||| |||||| ||||||||||||||| |||||||||||
Sbjct: 291 tcgatggcgaaattagatttgtcatcgctggcctgcgccgcgtccatgatctgtttcacg 232
Query: 1022 gtgagcgggagcagcgtctgcgcgctccgacccttagagaggccgctgttctccgggacc 1081
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 231 gtgagcgggagcagcgtctgcgcgctccgacccttggagaggccgctgctctccgggacc 172
Query: 1082 accgtggactgtgagggcatgaagcccccgccgccgaagagcgcgttagcgttcccggcg 1141
|||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||
Sbjct: 171 gccgtggactgtgagggcatgaagcccccgccgccgaagagcgagttggcgttggcggcg 112
Query: 1142 ccaccgc 1148
|||||||
Sbjct: 111 ccaccgc 105
Score = 61.9 bits (31), Expect = 1e-007
Identities = 47/51 (92%), Gaps = 1/51 (1%)
Strand = Plus / Minus
Query: 1187 tacatcgcggcgcttaaagcc-taagccctaggcttcccgaggaaggaagg 1236
|||||||||||| || ||||| ||| |||||||||||||||||||||||||
Sbjct: 69 tacatcgcggcggttgaagccctaaaccctaggcttcccgaggaaggaagg 19
>gb|CD429950.1|CD429950 ETH1_16_E08.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_16_E08_A002 5', mRNA sequence
Length = 673
Score = 597 bits (301), Expect = e-168
Identities = 430/473 (90%)
Strand = Plus / Minus
Query: 662 tccatatgcacctgaatgcagtgcagaaagtgacaggttatttcattgaagtttgtcaca 721
|||| |||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct: 482 tccagatgcacctgaatgcagtgcagaaagtgatggggtatttcattgaagtctgtcaca 423
Query: 722 cgccgcacagcataggcaactacatggcgctttccttgaaaacctttcaaaccgccaatg 781
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 422 cgccgcacagagtaggcaactatatggcgctttccttgaaaacctttcaaaccgccattg 363
Query: 782 actatgacatagttctcgttattagcatcagccatctccttagcatcggaagcctcattt 841
||||| ||||||| | ||| ||| |||||||||| |||||||| ||||||| |||||||
Sbjct: 362 actataacatagtccccgtcattgacatcagccatttccttagcgtcggaagactcattt 303
Query: 842 tcccagcgattcacatctatcttgccagtaccatcatcaagagtgaatacaacatctgtg 901
||||| |||||||||||||||||||| |||||||||| |||||||||| ||||||||||
Sbjct: 302 tcccaacgattcacatctatcttgccggtaccatcatgaagagtgaattgaacatctgtg 243
Query: 902 acacgctcaaccttacctagcatgcgtccaacaagcctaatcgtagacacctcaacgccg 961
||||| | ||||||| | |||||||||||||||||||| ||| |||||||||||||||
Sbjct: 242 acacggtgaaccttattcaacatgcgtccaacaagcctaaccgtggacacctcaacgccg 183
Query: 962 ttgatggcgaaattagacctgtcaccgctggtttgcgccgcgtccatggtctgtttcacg 1021
| ||||||||||||||| ||||| |||||| ||||||||||||||| |||||||||||
Sbjct: 182 tcgatggcgaaattagatttgtcatcgctggcctgcgccgcgtccatgatctgtttcacg 123
Query: 1022 gtgagcgggagcagcgtctgcgcgctccgacccttagagaggccgctgttctccgggacc 1081
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 122 gtgagcgggagcagcgtctgcgcgctccgacccttggagaggccgctgctctccgggacc 63
Query: 1082 accgtggactgtgagggcatgaagcccccgccgccgaagagcgcgttagcgtt 1134
|||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 62 gccgtggactgtgagggcatgaagcccccgccgccgaagagcgagttggcgtt 10
Score = 63.9 bits (32), Expect = 3e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 501 tgtgcagtccatgctcctggtccatgacagatgggtcatgaaaaacactcaagaccaagt 560
||||||||||||||||| |||| ||| | | |||||||| ||||||||||| ||||||||
Sbjct: 673 tgtgcagtccatgctcccggtctatggctgctgggtcattaaaaacactcatgaccaagt 614
>gb|BG050940.1|BG050940 FM1_54_C02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 500
Score = 464 bits (234), Expect = e-128
Identities = 351/390 (90%)
Strand = Plus / Minus
Query: 759 gaaaacctttcaaaccgccaatgactatgacatagttctcgttattagcatcagccatct 818
|||||||||||||||||||| ||||||| ||||||| | ||| ||| |||||||||| |
Sbjct: 500 gaaaacctttcaaaccgccattgactataacatagtccccgtcattgacatcagccattt 441
Query: 819 ccttagcatcggaagcctcattttcccagcgattcacatctatcttgccagtaccatcat 878
||||||| || |||| |||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 440 ccttagcgtcagaagactcattttcccaacgattcacatctatcttgccggtaccatcat 381
Query: 879 caagagtgaatacaacatctgtgacacgctcaaccttacctagcatgcgtccaacaagcc 938
|||||||||| |||||||||||| |||| ||||||| | |||||||||||||||||
Sbjct: 380 gaagagtgaattgaacatctgtgacgcgctgaaccttattcaacatgcgtccaacaagcc 321
Query: 939 taatcgtagacacctcaacgccgttgatggcgaaattagacctgtcaccgctggtttgcg 998
||| ||| |||||||||||||||| ||||||||||||||| ||||| |||||| ||||
Sbjct: 320 taaccgtggacacctcaacgccgtcgatggcgaaattagatttgtcatcgctggcctgcg 261
Query: 999 ccgcgtccatggtctgtttcacggtgagcgggagcagcgtctgcgcgctccgacccttag 1058
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 260 ccgcgtccatgatctgtttcacggtgagcgggagcagtgtctgcgcgctccgacccttgg 201
Query: 1059 agaggccgctgttctccgggaccaccgtggactgtgagggcatgaagcccccgccgccga 1118
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 200 agaggccgctgctctccgggaccgccgtggactgtgagggcatgaagcccccgccgccga 141
Query: 1119 agagcgcgttagcgttcccggcgccaccgc 1148
|||||| ||| ||||| ||||||||||||
Sbjct: 140 agagcgagttggcgttggcggcgccaccgc 111
Score = 61.9 bits (31), Expect = 1e-007
Identities = 47/51 (92%), Gaps = 1/51 (1%)
Strand = Plus / Minus
Query: 1187 tacatcgcggcgcttaaagcc-taagccctaggcttcccgaggaaggaagg 1236
|||||||||||| || ||||| ||| |||||||||||||||||||||||||
Sbjct: 75 tacatcgcggcggttgaagccctaaaccctaggcttcccgaggaaggaagg 25
>gb|BG357036.1|BG357036 OV2_9_B07.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 484
Score = 452 bits (228), Expect = e-125
Identities = 339/376 (90%)
Strand = Plus / Minus
Query: 773 ccgccaatgactatgacatagttctcgttattagcatcagccatctccttagcatcggaa 832
|||||| ||||||| ||||||| | ||| ||| |||||||||| |||||||| ||||||
Sbjct: 484 ccgccattgactataacatagtccccgtcattgacatcagccatttccttagcgtcggaa 425
Query: 833 gcctcattttcccagcgattcacatctatcttgccagtaccatcatcaagagtgaataca 892
| |||||||||||| |||||||||||||||||||| |||||||||| |||||||||| |
Sbjct: 424 gactcattttcccaacgattcacatctatcttgccggtaccatcatgaagagtgaattga 365
Query: 893 acatctgtgacacgctcaaccttacctagcatgcgtccaacaagcctaatcgtagacacc 952
|||||||||||||| | ||||||| | |||||||||||||||||||| ||| ||||||
Sbjct: 364 acatctgtgacacggtgaaccttattcaacatgcgtccaacaagcctaaccgtggacacc 305
Query: 953 tcaacgccgttgatggcgaaattagacctgtcaccgctggtttgcgccgcgtccatggtc 1012
|||||||||| ||||||||||||||| ||||| |||||| ||||||||||||||| ||
Sbjct: 304 tcaacgccgtcgatggcgaaattagatttgtcatcgctggcctgcgccgcgtccatgatc 245
Query: 1013 tgtttcacggtgagcgggagcagcgtctgcgcgctccgacccttagagaggccgctgttc 1072
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 244 tgtttcacggtgagcgggagcagcgtctgcgcgctccgacccttggagaggccgctgctc 185
Query: 1073 tccgggaccaccgtggactgtgagggcatgaagcccccgccgccgaagagcgcgttagcg 1132
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 184 tccgggaccgccgtggactgtgagggcatgaagcccccgccgccgaagagcgagttggcg 125
Query: 1133 ttcccggcgccaccgc 1148
|| ||||||||||||
Sbjct: 124 ttggcggcgccaccgc 109
Score = 61.9 bits (31), Expect = 1e-007
Identities = 47/51 (92%), Gaps = 1/51 (1%)
Strand = Plus / Minus
Query: 1187 tacatcgcggcgcttaaagcc-taagccctaggcttcccgaggaaggaagg 1236
|||||||||||| || ||||| ||| |||||||||||||||||||||||||
Sbjct: 73 tacatcgcggcggttgaagccctaaaccctaggcttcccgaggaaggaagg 23
>gb|AW671557.1|AW671557 LG1_348_C04.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 484
Score = 446 bits (225), Expect = e-123
Identities = 333/369 (90%)
Strand = Plus / Minus
Query: 780 tgactatgacatagttctcgttattagcatcagccatctccttagcatcggaagcctcat 839
||||||| ||||||| | ||| ||| |||||||||| |||||||| ||||||| |||||
Sbjct: 481 tgactataacatagtccccgtcattgacatcagccatttccttagcgtcggaagactcat 422
Query: 840 tttcccagcgattcacatctatcttgccagtaccatcatcaagagtgaatacaacatctg 899
||||||| |||||||||||||||||||| |||||||||| |||||||||| ||||||||
Sbjct: 421 tttcccaacgattcacatctatcttgccggtaccatcatgaagagtgaattgaacatctg 362
Query: 900 tgacacgctcaaccttacctagcatgcgtccaacaagcctaatcgtagacacctcaacgc 959
||||||| | ||||||| | |||||||||||||||||||| ||| |||||||||||||
Sbjct: 361 tgacacggtgaaccttattcaacatgcgtccaacaagcctaaccgtggacacctcaacgc 302
Query: 960 cgttgatggcgaaattagacctgtcaccgctggtttgcgccgcgtccatggtctgtttca 1019
||| ||||||||||||||| ||||| |||||| ||||||||||||||| |||||||||
Sbjct: 301 cgtcgatggcgaaattagatttgtcatcgctggcctgcgccgcgtccatgatctgtttca 242
Query: 1020 cggtgagcgggagcagcgtctgcgcgctccgacccttagagaggccgctgttctccggga 1079
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 241 cggtgagcgggagcagcgtctgcgcgctccgacccttggagaggccgctgctctccggga 182
Query: 1080 ccaccgtggactgtgagggcatgaagcccccgccgccgaagagcgcgttagcgttcccgg 1139
|| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||
Sbjct: 181 ccgccgtggactgtgagggcatgaagcccccgccgccgaagagcgagttggcgttggcgg 122
Query: 1140 cgccaccgc 1148
|||||||||
Sbjct: 121 cgccaccgc 113
Score = 61.9 bits (31), Expect = 1e-007
Identities = 47/51 (92%), Gaps = 1/51 (1%)
Strand = Plus / Minus
Query: 1187 tacatcgcggcgcttaaagcc-taagccctaggcttcccgaggaaggaagg 1236
|||||||||||| || ||||| ||| |||||||||||||||||||||||||
Sbjct: 77 tacatcgcggcggttgaagccctaaaccctaggcttcccgaggaaggaagg 27
>gb|BF704701.1|BF704701 FM1_50_D07.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 446
Score = 408 bits (206), Expect = e-112
Identities = 308/342 (90%)
Strand = Plus / Minus
Query: 807 catcagccatctccttagcatcggaagcctcattttcccagcgattcacatctatcttgc 866
|||||||||| |||||||| || |||| |||||||||||| |||||||||||||||||||
Sbjct: 423 catcagccatttccttagcgtcagaagactcattttcccaacgattcacatctatcttgc 364
Query: 867 cagtaccatcatcaagagtgaatacaacatctgtgacacgctcaaccttacctagcatgc 926
| |||||||||| |||||||||| |||||||||||| |||| ||||||| | |||||
Sbjct: 363 cggtaccatcatgaagagtgaattgaacatctgtgacgcgctgaaccttattcaacatgc 304
Query: 927 gtccaacaagcctaatcgtagacacctcaacgccgttgatggcgaaattagacctgtcac 986
||||||||||||||| ||| |||||||||||||||| ||||||||||||||| |||||
Sbjct: 303 gtccaacaagcctaaccgtggacacctcaacgccgtcgatggcgaaattagatttgtcat 244
Query: 987 cgctggtttgcgccgcgtccatggtctgtttcacggtgagcgggagcagcgtctgcgcgc 1046
|||||| ||||||||||||||| ||||||||||||||| ||||||||| ||||||||||
Sbjct: 243 cgctggcctgcgccgcgtccatgatctgtttcacggtgaacgggagcagtgtctgcgcgc 184
Query: 1047 tccgacccttagagaggccgctgttctccgggaccaccgtggactgtgagggcatgaagc 1106
|||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 183 tccgacccttggagaggccgctgctctccgggaccgccgtggactgtgagggcatgaagc 124
Query: 1107 ccccgccgccgaagagcgcgttagcgttcccggcgccaccgc 1148
|||||||||||||||||| ||| ||||| || |||||||||
Sbjct: 123 ccccgccgccgaagagcgagttggcgttggcgtcgccaccgc 82
>gb|BE358484.1|BE358484 DG1_30_C01.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 554
Score = 391 bits (197), Expect = e-106
Identities = 275/301 (91%)
Strand = Plus / Minus
Query: 848 cgattcacatctatcttgccagtaccatcatcaagagtgaatacaacatctgtgacacgc 907
|||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||
Sbjct: 403 cgattcacatctatcttgccggtaccatcatgaagagtgaattgaacatctgtgacacgg 344
Query: 908 tcaaccttacctagcatgcgtccaacaagcctaatcgtagacacctcaacgccgttgatg 967
| ||||||| | |||||||||||||||||||| ||| |||||||||||||||| ||||
Sbjct: 343 tgaaccttattcaacatgcgtccaacaagcctaaccgtggacacctcaacgccgtcgatg 284
Query: 968 gcgaaattagacctgtcaccgctggtttgcgccgcgtccatggtctgtttcacggtgagc 1027
||||||||||| ||||| |||||| ||||||||||||||| |||||||||||||||||
Sbjct: 283 gcgaaattagatttgtcatcgctggcctgcgccgcgtccatgatctgtttcacggtgagc 224
Query: 1028 gggagcagcgtctgcgcgctccgacccttagagaggccgctgttctccgggaccaccgtg 1087
||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||
Sbjct: 223 gggagcagcgtctgcgcgctccgacccttggagaggccgctgctctccgggaccgccgtg 164
Query: 1088 gactgtgagggcatgaagcccccgccgccgaagagcgcgttagcgttcccggcgccaccg 1147
||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||
Sbjct: 163 gactgtgagggcatgaagcccccgccgccgaagagcgagttggcgttggcggcgccaccg 104
Query: 1148 c 1148
|
Sbjct: 103 c 103
Score = 61.9 bits (31), Expect = 1e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 775 gccaatgactatgacatagttctcgttattagcatcagccatctccttagcatcggaagc 834
|||| ||||||| ||||||| | ||| ||| |||||||||| |||||||| |||||||
Sbjct: 554 gccattgactataacatagtccccgtcattgacatcagccatttccttagcgtcggaaga 495
Query: 835 ctcattttccc 845
|||||||||||
Sbjct: 494 ctcattttccc 484
Score = 61.9 bits (31), Expect = 1e-007
Identities = 47/51 (92%), Gaps = 1/51 (1%)
Strand = Plus / Minus
Query: 1187 tacatcgcggcgcttaaagcc-taagccctaggcttcccgaggaaggaagg 1236
|||||||||||| || ||||| ||| |||||||||||||||||||||||||
Sbjct: 67 tacatcgcggcggttgaagccctaaaccctaggcttcccgaggaaggaagg 17
>gb|CD221869.1|CD221869 CCC1_71_C03.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_71_C03_A007 5', mRNA sequence
Length = 440
Score = 347 bits (175), Expect = 2e-093
Identities = 262/291 (90%)
Strand = Plus / Minus
Query: 858 ctatcttgccagtaccatcatcaagagtgaatacaacatctgtgacacgctcaaccttac 917
|||||||||| |||||||||| |||||||||| |||||||||||| || | |||||||
Sbjct: 440 ctatcttgccggtaccatcatgaagagtgaattgaacatctgtgacccggtgaaccttat 381
Query: 918 ctagcatgcgtccaacaagcctaatcgtagacacctcaacgccgttgatggcgaaattag 977
| |||||||||||||||| ||| ||| |||||||||||||||| ||||||||||||||
Sbjct: 380 tcaacatgcgtccaacaagcataaccgtggacacctcaacgccgtcgatggcgaaattag 321
Query: 978 acctgtcaccgctggtttgcgccgcgtccatggtctgtttcacggtgagcgggagcagcg 1037
| ||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 320 atttgtcatcgctggcctgcgccgcgtccatgatctgtttcacggtgagcgggagcagcg 261
Query: 1038 tctgcgcgctccgacccttagagaggccgctgttctccgggaccaccgtggactgtgagg 1097
||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 260 tctgcgcgctccgacccttggaggggccgctgctctccgggaccgccgtggactgtgagg 201
Query: 1098 gcatgaagcccccgccgccgaagagcgcgttagcgttcccggcgccaccgc 1148
||||||||||||||||||||||||||| ||| ||||| ||||||||||||
Sbjct: 200 gcatgaagcccccgccgccgaagagcgagttggcgttggcggcgccaccgc 150
Score = 61.9 bits (31), Expect = 1e-007
Identities = 47/51 (92%), Gaps = 1/51 (1%)
Strand = Plus / Minus
Query: 1187 tacatcgcggcgcttaaagcc-taagccctaggcttcccgaggaaggaagg 1236
|||||||||||| || ||||| ||| |||||||||||||||||||||||||
Sbjct: 114 tacatcgcggcggttgaagccctaaaccctaggcttcccgaggaaggaagg 64
>gb|AW565713.1|AW565713 LG1_348_C04.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 644
Score = 238 bits (120), Expect = 1e-060
Identities = 239/278 (85%), Gaps = 3/278 (1%)
Strand = Plus / Minus
Query: 283 aggcgatcctgaagagggtttacatttcttcttccttgaaacggctccatacctacacgg 342
||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 402 aggcgatcctgcagagggtttacatttcttg---cttgaaacggctccatacctacacag 346
Query: 343 agcctgaacgctggacttgcaacgtggtcatccattccggacagatttgtagtggaagtc 402
|||||||| |||||||||||||| || |||||||||| | |||| ||| | ||| |||
Sbjct: 345 agcctgaaggctggacttgcaacatgatcatccattcgcggcagacttgaaatggttgtc 286
Query: 403 atcaattgtgttgtaaatgttgcccacatcaacatgaccttggatggccgcactgactac 462
|||||| ||||||||||||| |||| ||||||||| ||||||| |||| ||||||||
Sbjct: 285 atcaatcgtgttgtaaatgtcgccctggtcaacatgatgttggatgaccgccctgactac 226
Query: 463 atcatctggtagtttgagacgatctatgacatctttgatgtgcagtccatgctcctggtc 522
||| |||| |||||| ||||||| | |||||||||||||||||||||||||||| ||||
Sbjct: 225 atcttctgatagtttaagacgatttgcgacatctttgatgtgcagtccatgctcccggtc 166
Query: 523 catgacagatgggtcatgaaaaacactcaagaccaagt 560
||| | | |||||||| ||||||||||| ||||||||
Sbjct: 165 tatggctgctgggtcattaaaaacactcatgaccaagt 128
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 164 actgatgtcctgcaggtagacctagtctactcacatcttatgt 206
|||||||||| |||||||||||||||| | ||||||| |||||
Sbjct: 540 actgatgtccagcaggtagacctagtccaatcacatcatatgt 498
>gb|BE358672.1|BE358672 DG1_30_C01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 672
Score = 238 bits (120), Expect = 1e-060
Identities = 239/278 (85%), Gaps = 3/278 (1%)
Strand = Plus / Minus
Query: 283 aggcgatcctgaagagggtttacatttcttcttccttgaaacggctccatacctacacgg 342
||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 498 aggcgatcctgcagagggtttacatttcttg---cttgaaacggctccatacctacacag 442
Query: 343 agcctgaacgctggacttgcaacgtggtcatccattccggacagatttgtagtggaagtc 402
|||||||| |||||||||||||| || |||||||||| | |||| ||| | ||| |||
Sbjct: 441 agcctgaaggctggacttgcaacatgatcatccattcgcggcagacttgaaatggttgtc 382
Query: 403 atcaattgtgttgtaaatgttgcccacatcaacatgaccttggatggccgcactgactac 462
|||||| ||||||||||||| |||| ||||||||| ||||||| |||| ||||||||
Sbjct: 381 atcaatcgtgttgtaaatgtcgccctggtcaacatgatgttggatgaccgccctgactac 322
Query: 463 atcatctggtagtttgagacgatctatgacatctttgatgtgcagtccatgctcctggtc 522
||| |||| |||||| ||||||| | |||||||||||||||||||||||||||| ||||
Sbjct: 321 atcttctgatagtttaagacgatttgcgacatctttgatgtgcagtccatgctcccggtc 262
Query: 523 catgacagatgggtcatgaaaaacactcaagaccaagt 560
||| | | |||||||| ||||||||||| ||||||||
Sbjct: 261 tatggctgctgggtcattaaaaacactcatgaccaagt 224
Score = 117 bits (59), Expect = 3e-024
Identities = 83/91 (91%)
Strand = Plus / Minus
Query: 662 tccatatgcacctgaatgcagtgcagaaagtgacaggttatttcattgaagtttgtcaca 721
|||| |||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct: 92 tccagatgcacctgaatgcagtgcagaaagtgatggggtatttcattgaagtctgtcaca 33
Query: 722 cgccgcacagcataggcaactacatggcgct 752
|||||||||| |||||||||| ||||||||
Sbjct: 32 cgccgcacagagtaggcaactatatggcgct 2
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 164 actgatgtcctgcaggtagacctagtctactcacatcttatgt 206
|||||||||| |||||||||||||||| | ||||||| |||||
Sbjct: 636 actgatgtccagcaggtagacctagtccaatcacatcatatgt 594
>gb|BG356721.1|BG356721 OV2_9_B07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 619
Score = 238 bits (120), Expect = 1e-060
Identities = 239/278 (85%), Gaps = 3/278 (1%)
Strand = Plus / Minus
Query: 283 aggcgatcctgaagagggtttacatttcttcttccttgaaacggctccatacctacacgg 342
||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 403 aggcgatcctgcagagggtttacatttcttg---cttgaaacggctccatacctacacag 347
Query: 343 agcctgaacgctggacttgcaacgtggtcatccattccggacagatttgtagtggaagtc 402
|||||||| |||||||||||||| || |||||||||| | |||| ||| | ||| |||
Sbjct: 346 agcctgaaggctggacttgcaacatgatcatccattcgcggcagacttgaaatggttgtc 287
Query: 403 atcaattgtgttgtaaatgttgcccacatcaacatgaccttggatggccgcactgactac 462
|||||| ||||||||||||| |||| ||||||||| ||||||| |||| ||||||||
Sbjct: 286 atcaatcgtgttgtaaatgtcgccctggtcaacatgatgttggatgaccgccctgactac 227
Query: 463 atcatctggtagtttgagacgatctatgacatctttgatgtgcagtccatgctcctggtc 522
||| |||| |||||| ||||||| | |||||||||||||||||||||||||||| ||||
Sbjct: 226 atcttctgatagtttaagacgatttgcgacatctttgatgtgcagtccatgctcccggtc 167
Query: 523 catgacagatgggtcatgaaaaacactcaagaccaagt 560
||| | | |||||||| ||||||||||| ||||||||
Sbjct: 166 tatggctgctgggtcattaaaaacactcatgaccaagt 129
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 164 actgatgtcctgcaggtagacctagtctactcacatcttatgt 206
|||||||||| |||||||||||||||| | ||||||| |||||
Sbjct: 541 actgatgtccagcaggtagacctagtccaatcacatcatatgt 499
>gb|CD429902.1|CD429902 ETH1_16_E08.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_16_E08_A002 3', mRNA sequence
Length = 703
Score = 238 bits (120), Expect = 1e-060
Identities = 239/278 (85%), Gaps = 3/278 (1%)
Strand = Plus / Minus
Query: 283 aggcgatcctgaagagggtttacatttcttcttccttgaaacggctccatacctacacgg 342
||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 573 aggcgatcctgcagagggtttacatttcttg---cttgaaacggctccatacctacacag 517
Query: 343 agcctgaacgctggacttgcaacgtggtcatccattccggacagatttgtagtggaagtc 402
|||||||| |||||||||||||| || |||||||||| | |||| ||| | ||| |||
Sbjct: 516 agcctgaaggctggacttgcaacatgatcatccattcgcggcagacttgaaatggttgtc 457
Query: 403 atcaattgtgttgtaaatgttgcccacatcaacatgaccttggatggccgcactgactac 462
|||||| ||||||||||||| |||| ||||||||| ||||||| |||| ||||||||
Sbjct: 456 atcaatcgtgttgtaaatgtcgccctggtcaacatgatgttggatgaccgccctgactac 397
Query: 463 atcatctggtagtttgagacgatctatgacatctttgatgtgcagtccatgctcctggtc 522
||| |||| |||||| ||||||| | |||||||||||||||||||||||||||| ||||
Sbjct: 396 atcttctgatagtttaagacgatttgcgacatctttgatgtgcagtccatgctcccggtc 337
Query: 523 catgacagatgggtcatgaaaaacactcaagaccaagt 560
||| | | |||||||| ||||||||||| ||||||||
Sbjct: 336 tatggctgctgggtcattaaaaacactcatgaccaagt 299
Score = 184 bits (93), Expect = 1e-044
Identities = 147/164 (89%), Gaps = 1/164 (0%)
Strand = Plus / Minus
Query: 662 tccatatgcacctgaatgcagtgcagaaagtgacaggttatttcattgaagtttgtcaca 721
|||| |||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct: 167 tccagatgcacctgaatgcagtgcagaaagtgatggggtatttcattgaagtctgtcaca 108
Query: 722 cgccgcacagcataggcaactacatggcgctttccttgaaaacctttcaaaccgccaatg 781
|||||||||| |||||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct: 107 cgccgcacagagtaggcaactatatggcgctttccttgaaaacctttc-aaccgccattg 49
Query: 782 actatgacatagttctcgttattagcatcagccatctccttagc 825
||||| ||||||| | ||| ||| |||||||||| ||||||||
Sbjct: 48 actatnacatagtccccgtcattgacatcagccatttccttagc 5
Score = 40.1 bits (20), Expect = 0.50
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 175 gcaggtagacctagtctactcacatcttatgt 206
|||||||||||||||| | ||||||| |||||
Sbjct: 700 gcaggtagacctagtccaatcacatcatatgt 669
>gb|CF489351.1|CF489351 POL1_57_C05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_57_C05_A002 3', mRNA sequence
Length = 714
Score = 238 bits (120), Expect = 1e-060
Identities = 239/278 (85%), Gaps = 3/278 (1%)
Strand = Plus / Minus
Query: 283 aggcgatcctgaagagggtttacatttcttcttccttgaaacggctccatacctacacgg 342
||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 521 aggcgatcctgcagagggtttacatttcttg---cttgaaacggctccatacctacacag 465
Query: 343 agcctgaacgctggacttgcaacgtggtcatccattccggacagatttgtagtggaagtc 402
|||||||| |||||||||||||| || |||||||||| | |||| ||| | ||| |||
Sbjct: 464 agcctgaaggctggacttgcaacatgatcatccattcgcggcagacttgaaatggttgtc 405
Query: 403 atcaattgtgttgtaaatgttgcccacatcaacatgaccttggatggccgcactgactac 462
|||||| ||||||||||||| |||| ||||||||| ||||||| |||| ||||||||
Sbjct: 404 atcaatcgtgttgtaaatgtcgccctggtcaacatgatgttggatgaccgccctgactac 345
Query: 463 atcatctggtagtttgagacgatctatgacatctttgatgtgcagtccatgctcctggtc 522
||| |||| |||||| ||||||| | |||||||||||||||||||||||||||| ||||
Sbjct: 344 atcttctgatagtttaagacgatttgcgacatctttgatgtgcagtccatgctcccggtc 285
Query: 523 catgacagatgggtcatgaaaaacactcaagaccaagt 560
||| | | |||||||| ||||||||||| ||||||||
Sbjct: 284 tatggctgctgggtcattaaaaacactcatgaccaagt 247
Score = 165 bits (83), Expect = 1e-038
Identities = 107/115 (93%)
Strand = Plus / Minus
Query: 662 tccatatgcacctgaatgcagtgcagaaagtgacaggttatttcattgaagtttgtcaca 721
|||| |||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct: 115 tccagatgcacctgaatgcagtgcagaaagtgatggggtatttcattgaagtctgtcaca 56
Query: 722 cgccgcacagcataggcaactacatggcgctttccttgaaaacctttcaaaccgc 776
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 55 cgccgcacagagtaggcaactatatggcgctttccttgaaaacctttcaaaccgc 1
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 164 actgatgtcctgcaggtagacctagtctactcacatcttatgt 206
|||||||||| |||||||||||||||| | ||||||| |||||
Sbjct: 659 actgatgtccagcaggtagacctagtccaatcacatcatatgt 617
>gb|BG051259.1|BG051259 FM1_54_C02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 597
Score = 226 bits (114), Expect = 4e-057
Identities = 252/296 (85%), Gaps = 4/296 (1%)
Strand = Plus / Minus
Query: 283 aggcgatcctgaagagggtttacatttcttcttccttgaaacggctccatacctacacgg 342
||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 429 aggcgatcctgcagagggtttacatttcttg---cttgaaacggctccatacctacacag 373
Query: 343 agcct-gaacgctggacttgcaacgtggtcatccattccggacagatttgtagtggaagt 401
||||| ||| ||||||||||| || || |||||||||| | |||| ||| | ||| ||
Sbjct: 372 agccttgaaggctggacttgcgacatgatcatccattcgcggcagacttgaaatggttgt 313
Query: 402 catcaattgtgttgtaaatgttgcccacatcaacatgaccttggatggccgcactgacta 461
||||||| ||||||||||||| |||| ||||||||| ||||||| |||| |||||||
Sbjct: 312 catcaatcgtgttgtaaatgtcgccctggtcaacatgatgttggatgaccgccctgacta 253
Query: 462 catcatctggtagtttgagacgatctatgacatctttgatgtgcagtccatgctcctggt 521
|||| |||| |||||| ||||||| | |||||||||||||||||||||||||||| |||
Sbjct: 252 catcttctgatagtttaagacgatttgcgacatctttgatgtgcagtccatgctcccggt 193
Query: 522 ccatgacagatgggtcatgaaaaacactcaagaccaagttggatatgtagtttcca 577
| ||| | | |||||||| ||||||||||| |||||| | |||||||| |||||||
Sbjct: 192 ctatggctgctgggtcattaaaaacactcatgaccaattcggatatgttgtttcca 137
Score = 61.9 bits (31), Expect = 1e-007
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 164 actgatgtcctgcaggtagacctagtctactcacatcttatgt 206
|||||||||| |||||||||||||||| ||||||||| |||||
Sbjct: 567 actgatgtccagcaggtagacctagtccactcacatcatatgt 525
>gb|CD221848.1|CD221848 CCC1_71_C03.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_71_C03_A007 3', mRNA sequence
Length = 404
Score = 182 bits (92), Expect = 5e-044
Identities = 190/222 (85%), Gaps = 3/222 (1%)
Strand = Plus / Minus
Query: 283 aggcgatcctgaagagggtttacatttcttcttccttgaaacggctccatacctacacgg 342
||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 219 aggcgatcctgcagagggtttacatttcttg---cttgaaacggctccatacctacacag 163
Query: 343 agcctgaacgctggacttgcaacgtggtcatccattccggacagatttgtagtggaagtc 402
|||||||| |||||||||||||| || |||||||||| | |||| ||| | ||| |||
Sbjct: 162 agcctgaaggctggacttgcaacatgatcatccattcgcggcagacttgaaatggttgtc 103
Query: 403 atcaattgtgttgtaaatgttgcccacatcaacatgaccttggatggccgcactgactac 462
|||||| ||||||||||||| |||| ||||||||| ||||||| |||| ||||||||
Sbjct: 102 atcaatcgtgttgtaaatgtcgccctggtcaacatgatgttggatgaccgccctgactac 43
Query: 463 atcatctggtagtttgagacgatctatgacatctttgatgtg 504
||| |||| |||||| ||||||| | |||||||||||||||
Sbjct: 42 atcttctgatagtttaagacgatttgcgacatctttgatgtg 1
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 164 actgatgtcctgcaggtagacctagtctactcacatcttatgt 206
|||||||||| |||||||||||||||| | ||||||| |||||
Sbjct: 357 actgatgtccagcaggtagacctagtccaatcacatcatatgt 315
>gb|CN141018.1|CN141018 OX1_48_G07.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_48_G07_A002 5', mRNA sequence
Length = 648
Score = 163 bits (82), Expect = 5e-038
Identities = 103/110 (93%)
Strand = Plus / Minus
Query: 662 tccatatgcacctgaatgcagtgcagaaagtgacaggttatttcattgaagtttgtcaca 721
|||| |||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct: 110 tccagatgcacctgaatgcagtgcagaaagtgatggggtatttcattgaagtctgtcaca 51
Query: 722 cgccgcacagcataggcaactacatggcgctttccttgaaaacctttcaa 771
|||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 50 cgccgcacagaataggcaactatatggcgctttccttgaaaacctttcaa 1
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 532 tgggtcatgaaaaacactcaagaccaagt 560
|||||||| ||||||||||| ||||||||
Sbjct: 343 tgggtcattaaaaacactcatgaccaagt 315
>gb|CW059223.1|CW059223 104_302_10519191_114_30162 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519191, DNA
sequence
Length = 550
Score = 161 bits (81), Expect = 2e-037
Identities = 102/109 (93%)
Strand = Plus / Plus
Query: 947 gacacctcaacgccgttgatggcgaaattagacctgtcaccgctggtttgcgccgcgtcc 1006
|||||||||||||||| ||||||||||||||| ||||| |||||| ||||||||||||
Sbjct: 164 gacacctcaacgccgtcgatggcgaaattagatttgtcatcgctggcctgcgccgcgtcc 223
Query: 1007 atggtctgtttcacggtgagcgggagcagcgtctgcgcgctccgaccct 1055
||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 atgatctgtttcacggtgagcgggagcagcgtctgcgcgctccgaccct 272
Score = 135 bits (68), Expect = 1e-029
Identities = 89/96 (92%)
Strand = Plus / Plus
Query: 1053 ccttagagaggccgctgttctccgggaccaccgtggactgtgagggcatgaagcccccgc 1112
|||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 378 ccttggagaggccgctgctctccgggaccgccgtggactgtgagggcatgaagcccccgc 437
Query: 1113 cgccgaagagcgcgttagcgttcccggcgccaccgc 1148
|||||||||||| ||| ||||| ||||||||||||
Sbjct: 438 cgccgaagagcgagttggcgttggcggcgccaccgc 473
>gb|CW334247.1|CW334247 104_832_11482399_116_36051_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11482399, DNA
sequence
Length = 597
Score = 161 bits (81), Expect = 2e-037
Identities = 102/109 (93%)
Strand = Plus / Minus
Query: 947 gacacctcaacgccgttgatggcgaaattagacctgtcaccgctggtttgcgccgcgtcc 1006
|||||||||||||||| ||||||||||||||| ||||| |||||| ||||||||||||
Sbjct: 406 gacacctcaacgccgtcgatggcgaaattagatttgtcatcgctggcctgcgccgcgtcc 347
Query: 1007 atggtctgtttcacggtgagcgggagcagcgtctgcgcgctccgaccct 1055
||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 atgatctgtttcacggtgagcgggagcagcgtctgcgcgctccgaccct 298
Score = 135 bits (68), Expect = 1e-029
Identities = 89/96 (92%)
Strand = Plus / Minus
Query: 1053 ccttagagaggccgctgttctccgggaccaccgtggactgtgagggcatgaagcccccgc 1112
|||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 192 ccttggagaggccgctgctctccgggaccgccgtggactgtgagggcatgaagcccccgc 133
Query: 1113 cgccgaagagcgcgttagcgttcccggcgccaccgc 1148
|||||||||||| ||| ||||| ||||||||||||
Sbjct: 132 cgccgaagagcgagttggcgttggcggcgccaccgc 97
Score = 61.9 bits (31), Expect = 1e-007
Identities = 47/51 (92%), Gaps = 1/51 (1%)
Strand = Plus / Minus
Query: 1187 tacatcgcggcgcttaaagcc-taagccctaggcttcccgaggaaggaagg 1236
|||||||||||| || ||||| ||| |||||||||||||||||||||||||
Sbjct: 61 tacatcgcggcggttgaagccctaaaccctaggcttcccgaggaaggaagg 11
>gb|CW334248.1|CW334248 104_832_11482399_148_36052_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11482399, DNA
sequence
Length = 603
Score = 161 bits (81), Expect = 2e-037
Identities = 102/109 (93%)
Strand = Plus / Plus
Query: 947 gacacctcaacgccgttgatggcgaaattagacctgtcaccgctggtttgcgccgcgtcc 1006
|||||||||||||||| ||||||||||||||| ||||| |||||| ||||||||||||
Sbjct: 350 gacacctcaacgccgtcgatggcgaaattagatttgtcatcgctggcctgcgccgcgtcc 409
Query: 1007 atggtctgtttcacggtgagcgggagcagcgtctgcgcgctccgaccct 1055
||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 atgatctgtttcacggtgagcgggagcagcgtctgcgcgctccgaccct 458
Score = 56.0 bits (28), Expect = 8e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 1053 ccttagagaggccgctgttctccgggaccaccgtggactg 1092
|||| |||||||||||| ||||||||||| ||||||||||
Sbjct: 564 ccttggagaggccgctgctctccgggaccgccgtggactg 603
>gb|CW389606.1|CW389606 fsbb001f074o02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f074o02, DNA
sequence
Length = 640
Score = 161 bits (81), Expect = 2e-037
Identities = 102/109 (93%)
Strand = Plus / Plus
Query: 947 gacacctcaacgccgttgatggcgaaattagacctgtcaccgctggtttgcgccgcgtcc 1006
|||||||||||||||| ||||||||||||||| ||||| |||||| ||||||||||||
Sbjct: 332 gacacctcaacgccgtcgatggcgaaattagatttgtcatcgctggcctgcgccgcgtcc 391
Query: 1007 atggtctgtttcacggtgagcgggagcagcgtctgcgcgctccgaccct 1055
||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atgatctgtttcacggtgagcgggagcagcgtctgcgcgctccgaccct 440
Score = 109 bits (55), Expect = 6e-022
Identities = 77/83 (92%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1053 ccttagagaggccgctgttctccgggaccaccgtggactgtgagggcatgaag-cccccg 1111
|||| |||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 546 ccttggagaggccgctgctctccgggaccgccgtggactgtgagggcatgaagccccccg 605
Query: 1112 ccgccgaagagcgcgttagcgtt 1134
||||||||||||| ||| |||||
Sbjct: 606 ccgccgaagagcgagttggcgtt 628
>gb|CW488377.1|CW488377 fsbb001f254m01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f254m01, DNA
sequence
Length = 604
Score = 161 bits (81), Expect = 2e-037
Identities = 102/109 (93%)
Strand = Plus / Plus
Query: 947 gacacctcaacgccgttgatggcgaaattagacctgtcaccgctggtttgcgccgcgtcc 1006
|||||||||||||||| ||||||||||||||| ||||| |||||| ||||||||||||
Sbjct: 251 gacacctcaacgccgtcgatggcgaaattagatttgtcatcgctggcctgcgccgcgtcc 310
Query: 1007 atggtctgtttcacggtgagcgggagcagcgtctgcgcgctccgaccct 1055
||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 atgatctgtttcacggtgagcgggagcagcgtctgcgcgctccgaccct 359
Score = 127 bits (64), Expect = 3e-027
Identities = 88/96 (91%)
Strand = Plus / Plus
Query: 1053 ccttagagaggccgctgttctccgggaccaccgtggactgtgagggcatgaagcccccgc 1112
|||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 465 ccttggagaggccgctgctctccgggaccgccgtggactgtgagggcatgaagcccccgc 524
Query: 1113 cgccgaagagcgcgttagcgttcccggcgccaccgc 1148
||||||| |||| ||| ||||| ||||||||||||
Sbjct: 525 cgccgaaaagcgagttggcgttggcggcgccaccgc 560
>gb|CW488376.1|CW488376 fsbb001f254m01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f254m01, DNA
sequence
Length = 663
Score = 157 bits (79), Expect = 3e-036
Identities = 100/107 (93%)
Strand = Plus / Minus
Query: 947 gacacctcaacgccgttgatggcgaaattagacctgtcaccgctggtttgcgccgcgtcc 1006
|||||||||||||||| ||||||||||||||| ||||| |||||| ||||||||||||
Sbjct: 638 gacacctcaacgccgtcgatggcgaaattagatttgtcatcgctggcctgcgccgcgtcc 579
Query: 1007 atggtctgtttcacggtgagcgggagcagcgtctgcgcgctccgacc 1053
||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 atgatctgtttcacggtgagcgggagcagcgtctgcgcgctccgacc 532
Score = 135 bits (68), Expect = 1e-029
Identities = 89/96 (92%)
Strand = Plus / Minus
Query: 1053 ccttagagaggccgctgttctccgggaccaccgtggactgtgagggcatgaagcccccgc 1112
|||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 424 ccttggagaggccgctgctctccgggaccgccgtggactgtgagggcatgaagcccccgc 365
Query: 1113 cgccgaagagcgcgttagcgttcccggcgccaccgc 1148
|||||||||||| ||| ||||| ||||||||||||
Sbjct: 364 cgccgaagagcgagttggcgttggcggcgccaccgc 329
Score = 61.9 bits (31), Expect = 1e-007
Identities = 47/51 (92%), Gaps = 1/51 (1%)
Strand = Plus / Minus
Query: 1187 tacatcgcggcgcttaaagcc-taagccctaggcttcccgaggaaggaagg 1236
|||||||||||| || ||||| ||| |||||||||||||||||||||||||
Sbjct: 293 tacatcgcggcggttgaagccctaaaccctaggcttcccgaggaaggaagg 243
>gb|CW270921.1|CW270921 104_742_11402710_116_35331_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402710, DNA
sequence
Length = 654
Score = 137 bits (69), Expect = 3e-030
Identities = 146/171 (85%), Gaps = 3/171 (1%)
Strand = Plus / Minus
Query: 283 aggcgatcctgaagagggtttacatttcttcttccttgaaacggctccatacctacacgg 342
||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 397 aggcgatcctgcagagggtttacatttcttg---cttgaaacggctccatacctacacag 341
Query: 343 agcctgaacgctggacttgcaacgtggtcatccattccggacagatttgtagtggaagtc 402
|||||||| |||||||||||||| || |||||||||| | |||| ||| | ||| |||
Sbjct: 340 agcctgaaggctggacttgcaacatgatcatccattcgcggcagacttgaaatggttgtc 281
Query: 403 atcaattgtgttgtaaatgttgcccacatcaacatgaccttggatggccgc 453
|||||| ||||||||||||| |||| ||||||||| ||||||| ||||
Sbjct: 280 atcaatcgtgttgtaaatgtcgccctggtcaacatgatgttggatgaccgc 230
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 164 actgatgtcctgcaggtagacctagtctactcacatcttatgt 206
|||||||||| |||||||||||||||| | ||||||| |||||
Sbjct: 535 actgatgtccagcaggtagacctagtccaatcacatcatatgt 493
>gb|CW422138.1|CW422138 fsbb001f131e11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f131e11, DNA
sequence
Length = 707
Score = 137 bits (69), Expect = 3e-030
Identities = 146/171 (85%), Gaps = 3/171 (1%)
Strand = Plus / Minus
Query: 283 aggcgatcctgaagagggtttacatttcttcttccttgaaacggctccatacctacacgg 342
||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 356 aggcgatcctgcagagggtttacatttcttg---cttgaaacggctccatacctacacag 300
Query: 343 agcctgaacgctggacttgcaacgtggtcatccattccggacagatttgtagtggaagtc 402
|||||||| |||||||||||||| || |||||||||| | |||| ||| | ||| |||
Sbjct: 299 agcctgaaggctggacttgcaacatgatcatccattcgcggcagacttgaaatggttgtc 240
Query: 403 atcaattgtgttgtaaatgttgcccacatcaacatgaccttggatggccgc 453
|||||| ||||||||||||| |||| ||||||||| ||||||| ||||
Sbjct: 239 atcaatcgtgttgtaaatgtcgccctggtcaacatgatgttggatgaccgc 189
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 164 actgatgtcctgcaggtagacctagtctactcacatcttatgt 206
|||||||||| |||||||||||||||| | ||||||| |||||
Sbjct: 494 actgatgtccagcaggtagacctagtccaatcacatcatatgt 452
>gb|CW483873.1|CW483873 fsbb001f245l15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f245l15, DNA
sequence
Length = 786
Score = 137 bits (69), Expect = 3e-030
Identities = 146/171 (85%), Gaps = 3/171 (1%)
Strand = Plus / Plus
Query: 283 aggcgatcctgaagagggtttacatttcttcttccttgaaacggctccatacctacacgg 342
||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 85 aggcgatcctgcagagggtttacatttcttg---cttgaaacggctccatacctacacag 141
Query: 343 agcctgaacgctggacttgcaacgtggtcatccattccggacagatttgtagtggaagtc 402
|||||||| |||||||||||||| || |||||||||| | |||| ||| | ||| |||
Sbjct: 142 agcctgaaggctggacttgcaacatgatcatccattcgcggcagacttgaaatggttgtc 201
Query: 403 atcaattgtgttgtaaatgttgcccacatcaacatgaccttggatggccgc 453
|||||| ||||||||||||| |||| ||||||||| ||||||| ||||
Sbjct: 202 atcaatcgtgttgtaaatgtcgccctggtcaacatgatgttggatgaccgc 252
Score = 79.8 bits (40), Expect = 6e-013
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 455 ctgactacatcatctggtagtttgagacgatctatgacatctttgatgtgcagtccatgc 514
||||||||||| |||| |||||| ||||||| | |||||||||||||||||||||||||
Sbjct: 615 ctgactacatcttctgatagtttaagacgatttgcgacatctttgatgtgcagtccatgc 674
Query: 515 tcctggtc 522
||| ||||
Sbjct: 675 tcccggtc 682
>gb|CW059224.1|CW059224 104_302_10519191_115_30168 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519191, DNA
sequence
Length = 573
Score = 135 bits (68), Expect = 1e-029
Identities = 89/96 (92%)
Strand = Plus / Minus
Query: 1053 ccttagagaggccgctgttctccgggaccaccgtggactgtgagggcatgaagcccccgc 1112
|||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 466 ccttggagaggccgctgctctccgggaccgccgtggactgtgagggcatgaagcccccgc 407
Query: 1113 cgccgaagagcgcgttagcgttcccggcgccaccgc 1148
|||||||||||| ||| ||||| ||||||||||||
Sbjct: 406 cgccgaagagcgagttggcgttggcggcgccaccgc 371
Score = 61.9 bits (31), Expect = 1e-007
Identities = 47/51 (92%), Gaps = 1/51 (1%)
Strand = Plus / Minus
Query: 1187 tacatcgcggcgcttaaagcc-taagccctaggcttcccgaggaaggaagg 1236
|||||||||||| || ||||| ||| |||||||||||||||||||||||||
Sbjct: 335 tacatcgcggcggttgaagccctaaaccctaggcttcccgaggaaggaagg 285
>gb|CW389605.1|CW389605 fsbb001f074o02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f074o02, DNA
sequence
Length = 679
Score = 135 bits (68), Expect = 1e-029
Identities = 89/96 (92%)
Strand = Plus / Minus
Query: 1053 ccttagagaggccgctgttctccgggaccaccgtggactgtgagggcatgaagcccccgc 1112
|||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 481 ccttggagaggccgctgctctccgggaccgccgtggactgtgagggcatgaagcccccgc 422
Query: 1113 cgccgaagagcgcgttagcgttcccggcgccaccgc 1148
|||||||||||| ||| ||||| ||||||||||||
Sbjct: 421 cgccgaagagcgagttggcgttggcggcgccaccgc 386
Score = 127 bits (64), Expect = 3e-027
Identities = 85/92 (92%)
Strand = Plus / Minus
Query: 964 gatggcgaaattagacctgtcaccgctggtttgcgccgcgtccatggtctgtttcacggt 1023
||||| ||||||||| ||||| |||||| ||||||||||||||| |||||||||||||
Sbjct: 678 gatggggaaattagatttgtcatcgctggcctgcgccgcgtccatgatctgtttcacggt 619
Query: 1024 gagcgggagcagcgtctgcgcgctccgaccct 1055
||||||||||||||||||||||||||||||||
Sbjct: 618 gagcgggagcagcgtctgcgcgctccgaccct 587
Score = 61.9 bits (31), Expect = 1e-007
Identities = 47/51 (92%), Gaps = 1/51 (1%)
Strand = Plus / Minus
Query: 1187 tacatcgcggcgcttaaagcc-taagccctaggcttcccgaggaaggaagg 1236
|||||||||||| || ||||| ||| |||||||||||||||||||||||||
Sbjct: 350 tacatcgcggcggttgaagccctaaaccctaggcttcccgaggaaggaagg 300
>gb|CW233917.1|CW233917 104_687_11213701_116_37381_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213701, DNA
sequence
Length = 642
Score = 117 bits (59), Expect = 3e-024
Identities = 88/97 (90%), Gaps = 3/97 (3%)
Strand = Plus / Minus
Query: 283 aggcgatcctgaagagggtttacatttcttcttccttgaaacggctccatacctacacgg 342
||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 114 aggcgatcctgcagagggtttacatttcttg---cttgaaacggctccatacctacacag 58
Query: 343 agcctgaacgctggacttgcaacgtggtcatccattc 379
|||||||| |||||||||||||| || ||||||||||
Sbjct: 57 agcctgaaggctggacttgcaacatgatcatccattc 21
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 164 actgatgtcctgcaggtagacctagtctactcacatcttatgt 206
|||||||||| |||||||||||||||| | ||||||| |||||
Sbjct: 252 actgatgtccagcaggtagacctagtccaatcacatcatatgt 210
>gb|BF506856.1|BF506856 10005P-17b Pooled green leaf and root tissue Sorghum bicolor cDNA
clone 10005P-17, mRNA sequence
Length = 118
Score = 97.6 bits (49), Expect = 2e-018
Identities = 72/79 (91%), Gaps = 3/79 (3%)
Strand = Plus / Minus
Query: 287 gatcctgaagagggtttacatttcttcttccttgaaacggctccatacctacacggagcc 346
||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 76 gatcctgcagagggtttacatttcttg---cttgaaacggctccatacctacacagagcc 20
Query: 347 tgaacgctggacttgcaac 365
|||| ||||||||||||||
Sbjct: 19 tgaaggctggacttgcaac 1
>gb|CW350694.1|CW350694 fsbb001f012c03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f012c03, DNA
sequence
Length = 873
Score = 87.7 bits (44), Expect = 2e-015
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 662 tccatatgcacctgaatgcagtgcagaaagtgacaggttatttcattgaagtttgtcaca 721
|||| |||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct: 92 tccagatgcacctgaatgcagtgcagaaagtgatggggtatttcattgaagtctgtcaca 33
Query: 722 cgcc 725
||||
Sbjct: 32 cgcc 29
>gb|CW483872.1|CW483872 fsbb001f245l15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f245l15, DNA
sequence
Length = 696
Score = 79.8 bits (40), Expect = 6e-013
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 455 ctgactacatcatctggtagtttgagacgatctatgacatctttgatgtgcagtccatgc 514
||||||||||| |||| |||||| ||||||| | |||||||||||||||||||||||||
Sbjct: 217 ctgactacatcttctgatagtttaagacgatttgcgacatctttgatgtgcagtccatgc 158
Query: 515 tcctggtc 522
||| ||||
Sbjct: 157 tcccggtc 150
Score = 73.8 bits (37), Expect = 4e-011
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 337 acacggagcctgaacgctggacttgcaacgtggtcatccattccggacagatttgtagtg 396
|||| ||||||||| |||||||||||||| || |||||||||| | |||| ||| | ||
Sbjct: 696 acacagagcctgaaggctggacttgcaacatgatcatccattcgcggcagacttgaaatg 637
Query: 397 gaagtcatcaattgtgttgtaaatgttgcccacatcaacatgaccttggatggccgc 453
| ||||||||| ||||||||||||| |||| ||||||||| ||||||| ||||
Sbjct: 636 gttgtcatcaatcgtgttgtaaatgtcgccctggtcaacatgatgttggatgaccgc 580
>gb|CN140945.1|CN140945 OX1_48_G07.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_48_G07_A002 3', mRNA sequence
Length = 108
Score = 75.8 bits (38), Expect = 9e-012
Identities = 70/80 (87%), Gaps = 3/80 (3%)
Strand = Plus / Minus
Query: 283 aggcgatcctgaagagggtttacatttcttcttccttgaaacggctccatacctacacgg 342
||||||||| | |||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 85 aggcgatcccgcagaggggttacatttcttg---cttgaaacggctccatacctacacaa 29
Query: 343 agcctgaacgctggacttgc 362
|||||||| |||||||||||
Sbjct: 28 agcctgaaggctggacttgc 9
>gb|CL156942.1|CL156942 104_344_10783210_114_31373_154 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10783210, DNA
sequence
Length = 725
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1206 cctaagccctaggcttcccgaggaaggaagg 1236
||||| |||||||||||||||||||||||||
Sbjct: 1 cctaaaccctaggcttcccgaggaaggaagg 31
>gb|CW069807.1|CW069807 104_319_10526104_5_30099 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10526104, DNA
sequence
Length = 557
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 164 actgatgtcctgcaggtagacctagtctactcacatcttatgt 206
|||||||||| |||||||||||||||| | ||||||| |||||
Sbjct: 114 actgatgtccagcaggtagacctagtccaatcacatcatatgt 72
>gb|BZ349848.1|BZ349848 hr46e07.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hr46e07 5', DNA sequence
Length = 679
Score = 44.1 bits (22), Expect = 0.032
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 393 agtggaagtcatcaattgtgttgtaaatgttgcccacatcaacatg 438
|||| |||||||||||||| |||||||| || |||| ||| |||||
Sbjct: 429 agtgaaagtcatcaattgtattgtaaatatttcccatatccacatg 384
>gb|CW212202.1|CW212202 104_643_11190899_116_37022_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11190899, DNA
sequence
Length = 677
Score = 44.1 bits (22), Expect = 0.032
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 393 agtggaagtcatcaattgtgttgtaaatgttgcccacatcaacatg 438
|||| |||||||||||||| |||||||| || |||| ||| |||||
Sbjct: 584 agtgaaagtcatcaattgtattgtaaatatttcccatatccacatg 629
>gb|CW212203.1|CW212203 104_643_11190899_148_37023_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11190899, DNA
sequence
Length = 519
Score = 44.1 bits (22), Expect = 0.032
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 393 agtggaagtcatcaattgtgttgtaaatgttgcccacatcaacatg 438
|||| |||||||||||||| |||||||| || |||| ||| |||||
Sbjct: 458 agtgaaagtcatcaattgtattgtaaatatttcccatatccacatg 413
>gb|BZ330123.1|BZ330123 hv90b07.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hv90b07 5', DNA sequence
Length = 727
Score = 40.1 bits (20), Expect = 0.50
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 972 aattagacctgtcaccgctggttt 995
||||||||||||||| ||||||||
Sbjct: 585 aattagacctgtcactgctggttt 562
>gb|BZ335145.1|BZ335145 hx95g09.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx95g09 5', DNA sequence
Length = 678
Score = 40.1 bits (20), Expect = 0.50
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 606 gggctactcctccatatgttgcagctga 633
||||||||||||||||||| |||||||
Sbjct: 89 gggctactcctccatatgtcacagctga 116
>gb|CL188856.1|CL188856 104_405_10901881_116_32456_005 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901881, DNA
sequence
Length = 726
Score = 40.1 bits (20), Expect = 0.50
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 972 aattagacctgtcaccgctggttt 995
||||||||||||||| ||||||||
Sbjct: 34 aattagacctgtcactgctggttt 57
>gb|CW144269.1|CW144269 104_536_11137853_116_34966_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137853, DNA
sequence
Length = 630
Score = 40.1 bits (20), Expect = 0.50
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 606 gggctactcctccatatgttgcagctga 633
||||||||||||||||||| |||||||
Sbjct: 414 gggctactcctccatatgtcacagctga 441
>gb|CW144270.1|CW144270 104_536_11137853_148_34962_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137853, DNA
sequence
Length = 641
Score = 40.1 bits (20), Expect = 0.50
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 606 gggctactcctccatatgttgcagctga 633
||||||||||||||||||| |||||||
Sbjct: 540 gggctactcctccatatgtcacagctga 513
>gb|CW188151.1|CW188151 104_607_11172875_148_36722_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11172875, DNA
sequence
Length = 708
Score = 40.1 bits (20), Expect = 0.50
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 606 gggctactcctccatatgttgcagctga 633
||||||||||||||||||| |||||||
Sbjct: 119 gggctactcctccatatgtcacagctga 146
>gb|CW191688.1|CW191688 104_613_11178627_116_36935_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178627, DNA
sequence
Length = 713
Score = 40.1 bits (20), Expect = 0.50
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 606 gggctactcctccatatgttgcagctga 633
||||||||||||||||||| |||||||
Sbjct: 676 gggctactcctccatatgtcacagctga 649
>gb|CW191689.1|CW191689 104_613_11178627_148_36936_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178627, DNA
sequence
Length = 743
Score = 40.1 bits (20), Expect = 0.50
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 606 gggctactcctccatatgttgcagctga 633
||||||||||||||||||| |||||||
Sbjct: 369 gggctactcctccatatgtcacagctga 396
>gb|CW254765.1|CW254765 104_719_11225855_148_35128_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225855, DNA
sequence
Length = 624
Score = 40.1 bits (20), Expect = 0.50
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 606 gggctactcctccatatgttgcagctga 633
||||||||||||||||||| |||||||
Sbjct: 112 gggctactcctccatatgtcacagctga 85
>gb|BF481603.1|BF481603 FM1_20_B03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 546
Score = 40.1 bits (20), Expect = 0.50
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 105 ttcacggttatataggtctt 124
||||||||||||||||||||
Sbjct: 478 ttcacggttatataggtctt 497
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 288,541
Number of Sequences: 832831
Number of extensions: 288541
Number of successful extensions: 81734
Number of sequences better than 0.5: 47
Number of HSP's better than 0.5 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81584
Number of HSP's gapped (non-prelim): 112
length of query: 1291
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1271
effective length of database: 474,703,049
effective search space: 603347575279
effective search space used: 603347575279
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)