BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440015.2.2
(605 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW746257.1|AW746257 WS1_40_H02.b1_A002 Water-stressed 1 ... 408 e-112
gb|CX608159.1|CX608159 ANR1_37_B07.b1_A002 Anaerobic roots ... 408 e-112
gb|CX608247.1|CX608247 ANR1_37_B07.g1_A002 Anaerobic roots ... 408 e-112
gb|AW924253.1|AW924253 WS1_51_B07.b1_A002 Water-stressed 1 ... 404 e-111
gb|AW746290.1|AW746290 WS1_40_H02.g1_A002 Water-stressed 1 ... 400 e-110
gb|BI140000.1|BI140000 IP1_48_F03.b1_A002 Immature pannicle... 391 e-107
gb|BI139744.1|BI139744 IP1_48_F03.g1_A002 Immature pannicle... 383 e-104
gb|CF071236.1|CF071236 FE1_16_E07.b1_A002 Iron-deficient se... 335 3e-090
gb|BE917644.1|BE917644 OV1_6_C09.g1_A002 Ovary 1 (OV1) Sorg... 153 2e-035
gb|BE917721.1|BE917721 OV1_6_C09.b1_A002 Ovary 1 (OV1) Sorg... 153 2e-035
gb|CF480318.1|CF480318 POL1_65_B09.b1_A002 Pollen Sorghum b... 153 2e-035
gb|CF480395.1|CF480395 POL1_65_B09.g1_A002 Pollen Sorghum b... 153 2e-035
gb|CF488916.1|CF488916 POL1_53_B08.b1_A002 Pollen Sorghum b... 153 2e-035
gb|CW132443.1|CW132443 104_515_11116214_116_34799_051 Sorgh... 96 4e-018
gb|BZ349519.1|BZ349519 hr41f08.g1 WGS-SbicolorF (JM107 adap... 92 7e-017
gb|CW058903.1|CW058903 104_301_10519003_114_30158 Sorghum m... 92 7e-017
gb|CW327725.1|CW327725 104_823_11478908_116_35982_072 Sorgh... 92 7e-017
gb|CW327726.1|CW327726 104_823_11478908_148_35981_072 Sorgh... 92 7e-017
gb|CW386919.1|CW386919 fsbb001f071a21f0 Sorghum methylation... 82 7e-014
gb|CW489220.1|CW489220 fsbb001f274a14f0 Sorghum methylation... 82 7e-014
gb|CW489546.1|CW489546 fsbb001f274i17f0 Sorghum methylation... 82 7e-014
gb|CL163922.1|CL163922 104_357_10807515_114_31812_267 Sorgh... 80 3e-013
gb|CW035318.1|CW035318 104_265_10503085_115_30379 Sorghum m... 80 3e-013
gb|CW481098.1|CW481098 fsbb001f240h20f0 Sorghum methylation... 80 3e-013
gb|CW492839.1|CW492839 fsbb001f283f11k0 Sorghum methylation... 80 3e-013
gb|CN135569.1|CN135569 OX1_37_D11.g1_A002 Oxidatively-stres... 70 3e-010
gb|CW206718.1|CW206718 104_635_11187739_148_36965_072 Sorgh... 52 6e-005
gb|CW205762.1|CW205762 104_634_11187238_148_36953_091 Sorgh... 44 0.015
gb|AW287397.2|AW287397 LG1_303_D07.b1_A002 Light Grown 1 (L... 44 0.015
gb|BZ628232.1|BZ628232 ih58g03.g1 WGS-SbicolorF (DH5a methy... 40 0.23
>gb|AW746257.1|AW746257 WS1_40_H02.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 533
Score = 408 bits (206), Expect = e-112
Identities = 260/278 (93%)
Strand = Plus / Minus
Query: 230 ctatgatactgccaaacagtagtgtttttggagcatgatgtgctcgcttaacttgtctcg 289
|||||||||| | ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 376 ctatgatactacgaaacagtagtgcttttggagcatgatgtgctcacttaacttgtctca 317
Query: 290 gtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagc 349
|||||||| || || |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 316 gtcttctccagtgtattgtagttgagcaatttctcaatgaggtcaacatgggtcatgagc 257
Query: 350 attcgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttctgagtag 409
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 256 atccgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttccgagtag 197
Query: 410 tcggcctggaggaggtcgaggtatagatcccacttgttcccaataaccttgccgcaggtg 469
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct: 196 tcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtg 137
Query: 470 aagcagcgcactgggataatcatcttcaccgccgccgc 507
||||||||||| ||||| ||||||||| ||||||||||
Sbjct: 136 aagcagcgcaccgggatgatcatcttcgccgccgccgc 99
Score = 52.0 bits (26), Expect = 6e-005
Identities = 57/66 (86%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 96 ttatatcacttaaaatatccaacatcgttgcataggtggcaacaagcactgtcgcatgaa 155
||||||||||||||||||||||| || | |||||| | |||||| ||| | || ||||||
Sbjct: 514 ttatatcacttaaaatatccaacgtcatggcatagat-gcaacatgcaatttcacatgaa 456
Query: 156 aagtcc 161
||||||
Sbjct: 455 aagtcc 450
>gb|CX608159.1|CX608159 ANR1_37_B07.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_37_B07_A002 3', mRNA sequence
Length = 532
Score = 408 bits (206), Expect = e-112
Identities = 260/278 (93%)
Strand = Plus / Minus
Query: 230 ctatgatactgccaaacagtagtgtttttggagcatgatgtgctcgcttaacttgtctcg 289
|||||||||| | ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 341 ctatgatactacgaaacagtagtgcttttggagcatgatgtgctcacttaacttgtctca 282
Query: 290 gtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagc 349
|||||||| || || |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 281 gtcttctccagtgtattgtagttgagcaatttctcaatgaggtcaacatgggtcatgagc 222
Query: 350 attcgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttctgagtag 409
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 221 atccgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttccgagtag 162
Query: 410 tcggcctggaggaggtcgaggtatagatcccacttgttcccaataaccttgccgcaggtg 469
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct: 161 tcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtg 102
Query: 470 aagcagcgcactgggataatcatcttcaccgccgccgc 507
||||||||||| ||||| ||||||||| ||||||||||
Sbjct: 101 aagcagcgcaccgggatgatcatcttcgccgccgccgc 64
Score = 65.9 bits (33), Expect = 4e-009
Identities = 86/101 (85%), Gaps = 2/101 (1%)
Strand = Plus / Minus
Query: 61 caattcacacaaatacattagctttcttttagcaattatatcacttaaaatatccaacat 120
|||| |||||||||||||||| |||| ||| || ||||||||||||||||||||||| |
Sbjct: 513 caatccacacaaatacattaggtttcagtta-cagttatatcacttaaaatatccaacgt 455
Query: 121 cgttgcataggtggcaacaagcactgtcgcatgaaaagtcc 161
| | |||||| | |||||| ||| | || ||||||||||||
Sbjct: 454 catggcatagat-gcaacatgcaatttcacatgaaaagtcc 415
>gb|CX608247.1|CX608247 ANR1_37_B07.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_37_B07_A002 5', mRNA sequence
Length = 543
Score = 408 bits (206), Expect = e-112
Identities = 260/278 (93%)
Strand = Plus / Minus
Query: 230 ctatgatactgccaaacagtagtgtttttggagcatgatgtgctcgcttaacttgtctcg 289
|||||||||| | ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 339 ctatgatactacgaaacagtagtgcttttggagcatgatgtgctcacttaacttgtctca 280
Query: 290 gtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagc 349
|||||||| || || |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 279 gtcttctccagtgtattgtagttgagcaatttctcaatgaggtcaacatgggtcatgagc 220
Query: 350 attcgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttctgagtag 409
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 219 atccgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttccgagtag 160
Query: 410 tcggcctggaggaggtcgaggtatagatcccacttgttcccaataaccttgccgcaggtg 469
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct: 159 tcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtg 100
Query: 470 aagcagcgcactgggataatcatcttcaccgccgccgc 507
||||||||||| ||||| ||||||||| ||||||||||
Sbjct: 99 aagcagcgcaccgggatgatcatcttcgccgccgccgc 62
Score = 71.9 bits (36), Expect = 7e-011
Identities = 105/124 (84%), Gaps = 3/124 (2%)
Strand = Plus / Minus
Query: 39 tgtcaacgaaatattatcgacc-caattcacacaaatacattagctttcttttagcaatt 97
||||||| |||||||||||| |||| |||||||||||||||| |||| ||| || ||
Sbjct: 534 tgtcaacaaaatattatcgaattcaatccacacaaatacattaggtttcagtta-cagtt 476
Query: 98 atatcacttaaaatatccaacatcgttgcataggtggcaacaagcactgtcgcatgaaaa 157
||||||||||||||||||||| || | |||||| | |||||| ||| | || ||||||||
Sbjct: 475 atatcacttaaaatatccaacgtcatggcatagat-gcaacatgcaatttcacatgaaaa 417
Query: 158 gtcc 161
||||
Sbjct: 416 gtcc 413
>gb|AW924253.1|AW924253 WS1_51_B07.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 348
Score = 404 bits (204), Expect = e-111
Identities = 258/276 (93%)
Strand = Plus / Minus
Query: 232 atgatactgccaaacagtagtgtttttggagcatgatgtgctcgcttaacttgtctcggt 291
|||||||| | ||||||||||| |||||||||||||||||||| ||||||||||||| ||
Sbjct: 348 atgatactacgaaacagtagtgcttttggagcatgatgtgctcacttaacttgtctcagt 289
Query: 292 cttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcat 351
|||||| || || |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 288 cttctccagtgtattgtagttgagcaatttctcaatgaggtcaacatgggtcatgagcat 229
Query: 352 tcgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttctgagtagtc 411
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 228 ccgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttccgagtagtc 169
Query: 412 ggcctggaggaggtcgaggtatagatcccacttgttcccaataaccttgccgcaggtgaa 471
||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct: 168 ggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtgaa 109
Query: 472 gcagcgcactgggataatcatcttcaccgccgccgc 507
||||||||| ||||| ||||||||| ||||||||||
Sbjct: 108 gcagcgcaccgggatgatcatcttcgccgccgccgc 73
>gb|AW746290.1|AW746290 WS1_40_H02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 490
Score = 400 bits (202), Expect = e-110
Identities = 259/278 (93%)
Strand = Plus / Minus
Query: 230 ctatgatactgccaaacagtagtgtttttggagcatgatgtgctcgcttaacttgtctcg 289
|||||||||| | ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 298 ctatgatactacgaaacagtagtgcttttggagcatgatgtgctcacttaacttgtctca 239
Query: 290 gtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagc 349
|||||||| || || |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 238 gtcttctccagtgtattgtagttgagcaatttctcaatgaggtcaacatgggtcatgagc 179
Query: 350 attcgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttctgagtag 409
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 178 atccgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttccgagtag 119
Query: 410 tcggcctggaggaggtcgaggtatagatcccacttgttcccaataaccttgccgcaggtg 469
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct: 118 tcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtg 59
Query: 470 aagcagcgcactgggataatcatcttcaccgccgccgc 507
||||||||||| ||||| ||||||||| ||| ||||||
Sbjct: 58 aagcagcgcaccgggatgatcatcttcgccggcgccgc 21
Score = 65.9 bits (33), Expect = 4e-009
Identities = 102/121 (84%), Gaps = 3/121 (2%)
Strand = Plus / Minus
Query: 42 caacgaaatattatcg-acccaattcacacaaatacattagctttcttttagcaattata 100
|||| ||||||||||| | |||| |||||||||||||||| |||| ||| || |||||
Sbjct: 490 caacaaaatattatcgaattcaatccacacaaatacattaggtttcagtta-cagttata 432
Query: 101 tcacttaaaatatccaacatcgttgcataggtggcaacaagcactgtcgcatgaaaagtc 160
|||||||||||||||||| || | |||||| | |||||| ||| | || |||||||||||
Sbjct: 431 tcacttaaaatatccaacgtcatggcatagat-gcaacatgcaatttcacatgaaaagtc 373
Query: 161 c 161
|
Sbjct: 372 c 372
>gb|BI140000.1|BI140000 IP1_48_F03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 627
Score = 391 bits (197), Expect = e-107
Identities = 248/265 (93%)
Strand = Plus / Minus
Query: 243 aaacagtagtgtttttggagcatgatgtgctcgcttaacttgtctcggtcttctctaggg 302
||||||||||| |||||||||||||||||||| ||||||||||||| |||||||| || |
Sbjct: 624 aaacagtagtgcttttggagcatgatgtgctcacttaacttgtctcagtcttctccagtg 565
Query: 303 tgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagc 362
| |||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 564 tattgtagttgagcaatctctcaatgaggtcaacatgggtcatgagcatccgcctgcagc 505
Query: 363 agtagcggaacaattccaaagcatccagagcatccccttctgagtagtcggcctggagga 422
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 504 agtagcggaacaattccaaagcatccagagcatccccttccgagtagtcggcctggagga 445
Query: 423 ggtcgaggtatagatcccacttgttcccaataaccttgccgcaggtgaagcagcgcactg 482
|||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 444 ggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtgaagcagcgcaccg 385
Query: 483 ggataatcatcttcaccgccgccgc 507
|||| ||||||||| ||||||||||
Sbjct: 384 ggatgatcatcttcgccgccgccgc 360
>gb|BI139744.1|BI139744 IP1_48_F03.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 450
Score = 383 bits (193), Expect = e-104
Identities = 241/257 (93%)
Strand = Plus / Minus
Query: 230 ctatgatactgccaaacagtagtgtttttggagcatgatgtgctcgcttaacttgtctcg 289
|||||||||| | ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 258 ctatgatactacgaaacagtagtgcttttggagcatgatgtgctcacttaacttgtctca 199
Query: 290 gtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagc 349
|||||||| || || |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 198 gtcttctccagtgtattgtagttgagcaatttctcaatgaggtcaacatgggtcatgagc 139
Query: 350 attcgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttctgagtag 409
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 138 atccgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttccgagtag 79
Query: 410 tcggcctggaggaggtcgaggtatagatcccacttgttcccaataaccttgccgcaggtg 469
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct: 78 tcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcaccttgccgcaggtg 19
Query: 470 aagcagcgcactgggat 486
||||||||||| |||||
Sbjct: 18 aagcagcgcaccgggat 2
Score = 65.9 bits (33), Expect = 4e-009
Identities = 102/121 (84%), Gaps = 3/121 (2%)
Strand = Plus / Minus
Query: 42 caacgaaatattatcg-acccaattcacacaaatacattagctttcttttagcaattata 100
|||| ||||||||||| | |||| |||||||||||||||| |||| ||| || |||||
Sbjct: 450 caacaaaatattatcgaattcaatccacacaaatacattaggtttcagtta-cagttata 392
Query: 101 tcacttaaaatatccaacatcgttgcataggtggcaacaagcactgtcgcatgaaaagtc 160
|||||||||||||||||| || | |||||| | |||||| ||| | || |||||||||||
Sbjct: 391 tcacttaaaatatccaacgtcatggcatagat-gcaacatgcaatttcacatgaaaagtc 333
Query: 161 c 161
|
Sbjct: 332 c 332
>gb|CF071236.1|CF071236 FE1_16_E07.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_16_E07_A002 3', mRNA sequence
Length = 422
Score = 335 bits (169), Expect = 3e-090
Identities = 214/229 (93%)
Strand = Plus / Minus
Query: 230 ctatgatactgccaaacagtagtgtttttggagcatgatgtgctcgcttaacttgtctcg 289
|||||||||| | ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 229 ctatgatactacgaaacagtagtgcttttggagcatgatgtgctcacttaacttgtctca 170
Query: 290 gtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagc 349
|||||||| || || |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 169 gtcttctccagtgtattgtagttgagcaatttctcaatgaggtcaacatgggtcatgagc 110
Query: 350 attcgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttctgagtag 409
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 109 atccgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttccgagtag 50
Query: 410 tcggcctggaggaggtcgaggtatagatcccacttgttcccaataacct 458
||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct: 49 tcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcacct 1
Score = 65.9 bits (33), Expect = 4e-009
Identities = 86/101 (85%), Gaps = 2/101 (1%)
Strand = Plus / Minus
Query: 61 caattcacacaaatacattagctttcttttagcaattatatcacttaaaatatccaacat 120
|||| |||||||||||||||| |||| ||| || ||||||||||||||||||||||| |
Sbjct: 401 caatccacacaaatacattaggtttcagtta-cagttatatcacttaaaatatccaacgt 343
Query: 121 cgttgcataggtggcaacaagcactgtcgcatgaaaagtcc 161
| | |||||| | |||||| ||| | || ||||||||||||
Sbjct: 342 catggcatagat-gcaacatgcaatttcacatgaaaagtcc 303
>gb|BE917644.1|BE917644 OV1_6_C09.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 396
Score = 153 bits (77), Expect = 2e-035
Identities = 182/217 (83%)
Strand = Plus / Minus
Query: 290 gtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagc 349
|||||||| || |||||||||||||| | ||||||||||||||| ||||| ||||| |||
Sbjct: 253 gtcttctccagcgtgttgtagttgaggagcttctcaatgaggtcgacatgggtcatcagc 194
Query: 350 attcgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttctgagtag 409
|||||||| |||||||| ||| || | ||| ||| |||||||||| | || |||
Sbjct: 193 attcgcctacagcagtaacggtttaaattcaaggcagtcagagcatcctcctcgtcatag 134
Query: 410 tcggcctggaggaggtcgaggtatagatcccacttgttcccaataaccttgccgcaggtg 469
|| ||||||| ||| ||||||||| ||||||||||| ||| || ||||||||||| |||
Sbjct: 133 tccgcctggacgagttcgaggtatgcatcccacttgtccccgatcaccttgccgcatgtg 74
Query: 470 aagcagcgcactgggataatcatcttcaccgccgccg 506
||||||||||| ||||| ||||||||| |||||||||
Sbjct: 73 aagcagcgcaccgggatgatcatcttcgccgccgccg 37
>gb|BE917721.1|BE917721 OV1_6_C09.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 480
Score = 153 bits (77), Expect = 2e-035
Identities = 182/217 (83%)
Strand = Plus / Minus
Query: 290 gtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagc 349
|||||||| || |||||||||||||| | ||||||||||||||| ||||| ||||| |||
Sbjct: 253 gtcttctccagcgtgttgtagttgaggagcttctcaatgaggtcgacatgggtcatcagc 194
Query: 350 attcgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttctgagtag 409
|||||||| |||||||| ||| || | ||| ||| |||||||||| | || |||
Sbjct: 193 attcgcctacagcagtaacggtttaaattcaaggcagtcagagcatcctcctcgtcatag 134
Query: 410 tcggcctggaggaggtcgaggtatagatcccacttgttcccaataaccttgccgcaggtg 469
|| ||||||| ||| ||||||||| ||||||||||| ||| || ||||||||||| |||
Sbjct: 133 tccgcctggacgagttcgaggtatgcatcccacttgtccccgatcaccttgccgcatgtg 74
Query: 470 aagcagcgcactgggataatcatcttcaccgccgccg 506
||||||||||| ||||| ||||||||| |||||||||
Sbjct: 73 aagcagcgcaccgggatgatcatcttcgccgccgccg 37
>gb|CF480318.1|CF480318 POL1_65_B09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_65_B09_A002 3', mRNA sequence
Length = 399
Score = 153 bits (77), Expect = 2e-035
Identities = 182/217 (83%)
Strand = Plus / Minus
Query: 290 gtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagc 349
|||||||| || |||||||||||||| | ||||||||||||||| ||||| ||||| |||
Sbjct: 236 gtcttctccagcgtgttgtagttgaggagcttctcaatgaggtcgacatgggtcatcagc 177
Query: 350 attcgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttctgagtag 409
|||||||| |||||||| ||| || | ||| ||| |||||||||| | || |||
Sbjct: 176 attcgcctacagcagtaacggtttaaattcaaggcagtcagagcatcctcctcgtcatag 117
Query: 410 tcggcctggaggaggtcgaggtatagatcccacttgttcccaataaccttgccgcaggtg 469
|| ||||||| ||| ||||||||| ||||||||||| ||| || ||||||||||| |||
Sbjct: 116 tccgcctggacgagttcgaggtatgcatcccacttgtccccgatcaccttgccgcatgtg 57
Query: 470 aagcagcgcactgggataatcatcttcaccgccgccg 506
||||||||||| ||||| ||||||||| |||||||||
Sbjct: 56 aagcagcgcaccgggatgatcatcttcgccgccgccg 20
>gb|CF480395.1|CF480395 POL1_65_B09.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_65_B09_A002 5', mRNA sequence
Length = 504
Score = 153 bits (77), Expect = 2e-035
Identities = 182/217 (83%)
Strand = Plus / Minus
Query: 290 gtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagc 349
|||||||| || |||||||||||||| | ||||||||||||||| ||||| ||||| |||
Sbjct: 317 gtcttctccagcgtgttgtagttgaggagcttctcaatgaggtcgacatgggtcatcagc 258
Query: 350 attcgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttctgagtag 409
|||||||| |||||||| ||| || | ||| ||| |||||||||| | || |||
Sbjct: 257 attcgcctacagcagtaacggtttaaattcaaggcagtcagagcatcctcctcgtcatag 198
Query: 410 tcggcctggaggaggtcgaggtatagatcccacttgttcccaataaccttgccgcaggtg 469
|| ||||||| ||| ||||||||| ||||||||||| ||| || ||||||||||| |||
Sbjct: 197 tccgcctggacgagttcgaggtatgcatcccacttgtccccgatcaccttgccgcatgtg 138
Query: 470 aagcagcgcactgggataatcatcttcaccgccgccg 506
||||||||||| ||||| ||||||||| |||||||||
Sbjct: 137 aagcagcgcaccgggatgatcatcttcgccgccgccg 101
>gb|CF488916.1|CF488916 POL1_53_B08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_53_B08_A002 3', mRNA sequence
Length = 462
Score = 153 bits (77), Expect = 2e-035
Identities = 182/217 (83%)
Strand = Plus / Minus
Query: 290 gtcttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagc 349
|||||||| || |||||||||||||| | ||||||||||||||| ||||| ||||| |||
Sbjct: 261 gtcttctccagcgtgttgtagttgaggagcttctcaatgaggtcgacatgggtcatcagc 202
Query: 350 attcgcctgcagcagtagcggaacaattccaaagcatccagagcatccccttctgagtag 409
|||||||| |||||||| ||| || | ||| ||| |||||||||| | || |||
Sbjct: 201 attcgcctacagcagtaacggtttaaattcaaggcagtcagagcatcctcctcgtcatag 142
Query: 410 tcggcctggaggaggtcgaggtatagatcccacttgttcccaataaccttgccgcaggtg 469
|| ||||||| ||| ||||||||| ||||||||||| ||| || ||||||||||| |||
Sbjct: 141 tccgcctggacgagttcgaggtatgcatcccacttgtccccgatcaccttgccgcatgtg 82
Query: 470 aagcagcgcactgggataatcatcttcaccgccgccg 506
||||||||||| ||||| ||||||||| |||||||||
Sbjct: 81 aagcagcgcaccgggatgatcatcttcgccgccgccg 45
>gb|CW132443.1|CW132443 104_515_11116214_116_34799_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116214, DNA
sequence
Length = 714
Score = 95.6 bits (48), Expect = 4e-018
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 230 ctatgatactgccaaacagtagtgtttttggagcatgatgtgctcgcttaacttgtctcg 289
|||||||||| | ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 174 ctatgatactacgaaacagtagtgcttttggagcatgatgtgctcacttaacttgtctca 115
Query: 290 gtcttctc 297
||||||||
Sbjct: 114 gtcttctc 107
Score = 89.7 bits (45), Expect = 3e-016
Identities = 114/133 (85%), Gaps = 3/133 (2%)
Strand = Plus / Minus
Query: 30 acgcacatctgtcaacgaaatattatcg-acccaattcacacaaatacattagctttctt 88
|||||||||||||||| ||||||||||| | |||| |||||||||||||||| ||||
Sbjct: 378 acgcacatctgtcaacaaaatattatcgaattcaatccacacaaatacattaggtttcag 319
Query: 89 ttagcaattatatcacttaaaatatccaacatcgttgcataggtggcaacaagcactgtc 148
||| || ||||||||||||||||||||||| || | |||||| | |||||| ||| | ||
Sbjct: 318 tta-cagttatatcacttaaaatatccaacgtcatggcatagat-gcaacatgcaatttc 261
Query: 149 gcatgaaaagtcc 161
||||||||||||
Sbjct: 260 acatgaaaagtcc 248
>gb|BZ349519.1|BZ349519 hr41f08.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hr41f08 5', DNA sequence
Length = 484
Score = 91.7 bits (46), Expect = 7e-017
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 397 cccttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataac 456
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 160 cccttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcac 219
Query: 457 ct 458
||
Sbjct: 220 ct 221
>gb|CW058903.1|CW058903 104_301_10519003_114_30158 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519003, DNA
sequence
Length = 622
Score = 91.7 bits (46), Expect = 7e-017
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 397 cccttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataac 456
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 206 cccttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcac 265
Query: 457 ct 458
||
Sbjct: 266 ct 267
Score = 81.8 bits (41), Expect = 7e-014
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 455 accttgccgcaggtgaagcagcgcactgggataatcatcttcaccgccgccgc 507
|||||||||||||||||||||||||| ||||| ||||||||| ||||||||||
Sbjct: 545 accttgccgcaggtgaagcagcgcaccgggatgatcatcttcgccgccgccgc 597
>gb|CW327725.1|CW327725 104_823_11478908_116_35982_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478908, DNA
sequence
Length = 237
Score = 91.7 bits (46), Expect = 7e-017
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 397 cccttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataac 456
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 25 cccttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcac 84
Query: 457 ct 458
||
Sbjct: 85 ct 86
>gb|CW327726.1|CW327726 104_823_11478908_148_35981_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478908, DNA
sequence
Length = 237
Score = 91.7 bits (46), Expect = 7e-017
Identities = 58/62 (93%)
Strand = Plus / Minus
Query: 397 cccttctgagtagtcggcctggaggaggtcgaggtatagatcccacttgttcccaataac 456
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 211 cccttccgagtagtcggcctggaggaggtcgaggtagaggtcccacttgttcccaatcac 152
Query: 457 ct 458
||
Sbjct: 151 ct 150
>gb|CW386919.1|CW386919 fsbb001f071a21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f071a21, DNA
sequence
Length = 454
Score = 81.8 bits (41), Expect = 7e-014
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 455 accttgccgcaggtgaagcagcgcactgggataatcatcttcaccgccgccgc 507
|||||||||||||||||||||||||| ||||| ||||||||| ||||||||||
Sbjct: 279 accttgccgcaggtgaagcagcgcaccgggatgatcatcttcgccgccgccgc 227
>gb|CW489220.1|CW489220 fsbb001f274a14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f274a14, DNA
sequence
Length = 534
Score = 81.8 bits (41), Expect = 7e-014
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 455 accttgccgcaggtgaagcagcgcactgggataatcatcttcaccgccgccgc 507
|||||||||||||||||||||||||| ||||| ||||||||| ||||||||||
Sbjct: 190 accttgccgcaggtgaagcagcgcaccgggatgatcatcttcgccgccgccgc 242
>gb|CW489546.1|CW489546 fsbb001f274i17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f274i17, DNA
sequence
Length = 588
Score = 81.8 bits (41), Expect = 7e-014
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 455 accttgccgcaggtgaagcagcgcactgggataatcatcttcaccgccgccgc 507
|||||||||||||||||||||||||| ||||| ||||||||| ||||||||||
Sbjct: 190 accttgccgcaggtgaagcagcgcaccgggatgatcatcttcgccgccgccgc 242
>gb|CL163922.1|CL163922 104_357_10807515_114_31812_267 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10807515, DNA
sequence
Length = 726
Score = 79.8 bits (40), Expect = 3e-013
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 303 tgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagc 362
||||||||||||| | ||||||||||||||| ||||| ||||| ||||||||||| ||||
Sbjct: 240 tgttgtagttgaggagcttctcaatgaggtcgacatgggtcatcagcattcgcctacagc 299
Query: 363 agta 366
||||
Sbjct: 300 agta 303
>gb|CW035318.1|CW035318 104_265_10503085_115_30379 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10503085, DNA
sequence
Length = 630
Score = 79.8 bits (40), Expect = 3e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 303 tgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagc 362
||||||||||||| | ||||||||||||||| ||||| ||||| ||||||||||| ||||
Sbjct: 394 tgttgtagttgaggagcttctcaatgaggtcgacatgggtcatcagcattcgcctacagc 335
Query: 363 agta 366
||||
Sbjct: 334 agta 331
>gb|CW481098.1|CW481098 fsbb001f240h20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f240h20, DNA
sequence
Length = 552
Score = 79.8 bits (40), Expect = 3e-013
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 303 tgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagc 362
||||||||||||| | ||||||||||||||| ||||| ||||| ||||||||||| ||||
Sbjct: 210 tgttgtagttgaggagcttctcaatgaggtcgacatgggtcatcagcattcgcctacagc 269
Query: 363 agta 366
||||
Sbjct: 270 agta 273
>gb|CW492839.1|CW492839 fsbb001f283f11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f283f11, DNA
sequence
Length = 531
Score = 79.8 bits (40), Expect = 3e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 303 tgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagc 362
||||||||||||| | ||||||||||||||| ||||| ||||| ||||||||||| ||||
Sbjct: 171 tgttgtagttgaggagcttctcaatgaggtcgacatgggtcatcagcattcgcctacagc 112
Query: 363 agta 366
||||
Sbjct: 111 agta 108
>gb|CN135569.1|CN135569 OX1_37_D11.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_37_D11_A002 5', mRNA sequence
Length = 115
Score = 69.9 bits (35), Expect = 3e-010
Identities = 73/83 (87%), Gaps = 2/83 (2%)
Strand = Plus / Minus
Query: 37 tctgtcaacgaaatattatcgacc-caattcacacaaatacattagctttcttttagcaa 95
||||||||| |||||||||||| |||| |||||||||||||||| |||| ||| ||
Sbjct: 96 tctgtcaacaaaatattatcgaattcaatccacacaaatacattaggtttcagtta-cag 38
Query: 96 ttatatcacttaaaatatccaac 118
|||||||||||||||||||||||
Sbjct: 37 ttatatcacttaaaatatccaac 15
>gb|CW206718.1|CW206718 104_635_11187739_148_36965_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187739, DNA
sequence
Length = 373
Score = 52.0 bits (26), Expect = 6e-005
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 61 caattcacacaaatacattagctttcttttagcaattatatcacttaaaatatccaac 118
|||| |||||||||||||||| | || ||| || |||||||||||||||||||||||
Sbjct: 157 caatccacacaaatacattaggtgtcagtta-cagttatatcacttaaaatatccaac 101
>gb|CW205762.1|CW205762 104_634_11187238_148_36953_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187238, DNA
sequence
Length = 645
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 514 ccgctggagcacggagctaggg 535
||||||||||||||||||||||
Sbjct: 146 ccgctggagcacggagctaggg 125
>gb|AW287397.2|AW287397 LG1_303_D07.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 445
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 514 ccgctggagcacggagctaggg 535
||||||||||||||||||||||
Sbjct: 103 ccgctggagcacggagctaggg 82
>gb|BZ628232.1|BZ628232 ih58g03.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih58g03 5', DNA sequence
Length = 715
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 528 agctagggagggggaagggt 547
||||||||||||||||||||
Sbjct: 590 agctagggagggggaagggt 571
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 168,767
Number of Sequences: 832831
Number of extensions: 168767
Number of successful extensions: 50441
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50361
Number of HSP's gapped (non-prelim): 62
length of query: 605
length of database: 491,359,669
effective HSP length: 19
effective length of query: 586
effective length of database: 475,535,880
effective search space: 278664025680
effective search space used: 278664025680
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)