BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437842.2.1
(1093 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN145355.1|CN145355 WOUND1_28_A03.g1_A002 Wounded leaves... 626 e-177
gb|CN143608.1|CN143608 WOUND1_17_G06.b1_A002 Wounded leaves... 359 4e-097
gb|CL190993.1|CL190993 104_409_10906471_114_32488_022 Sorgh... 319 3e-085
gb|CW331181.1|CW331181 104_828_11480770_148_36025_041 Sorgh... 319 3e-085
gb|CL190994.1|CL190994 104_409_10906471_116_32496_022 Sorgh... 303 2e-080
gb|CW186709.1|CW186709 104_604_11166709_116_36709_051 Sorgh... 287 1e-075
gb|CX613435.1|CX613435 GABR1_8_D10.b1_A002 GA- or brassinol... 266 4e-069
gb|CW331180.1|CW331180 104_828_11480770_116_36026_041 Sorgh... 254 1e-065
gb|CW186710.1|CW186710 104_604_11166709_148_36710_051 Sorgh... 246 4e-063
gb|CW493569.1|CW493569 fsbb001f284g08f0 Sorghum methylation... 240 2e-061
gb|CN129749.1|CN129749 RHOH1_37_E03.b1_A002 Acid- and alkal... 236 4e-060
gb|CW359305.1|CW359305 fsbb001f026n23k0 Sorghum methylation... 220 2e-055
gb|CW359304.1|CW359304 fsbb001f026n23f0 Sorghum methylation... 216 3e-054
gb|BE597274.1|BE597274 PI1_70_C05.g1_A002 Pathogen induced ... 186 3e-045
gb|BE597495.1|BE597495 PI1_70_C05.b1_A002 Pathogen induced ... 182 5e-044
gb|BE359084.1|BE359084 DG1_38_H02.g1_A002 Dark Grown 1 (DG1... 155 1e-035
gb|CD229384.1|CD229384 CCC1_15_E01.b1_A007 Callus culture/c... 149 6e-034
gb|CW134050.1|CW134050 104_518_11117099_148_34816_046 Sorgh... 143 4e-032
gb|CW194292.1|CW194292 104_617_11180020_148_36790_008 Sorgh... 143 4e-032
gb|CW217310.1|CW217310 104_650_11195588_148_37131_072 Sorgh... 141 2e-031
gb|CW188088.1|CW188088 104_607_11172835_116_36721_068 Sorgh... 133 4e-029
gb|CW041863.1|CW041863 104_275_10506796_115_30285 Sorghum m... 127 2e-027
gb|CW157694.1|CW157694 104_561_11147661_116_36391_093 Sorgh... 125 9e-027
gb|CW071495.1|CW071495 104_323_10591543_114_30471 Sorghum m... 123 4e-026
gb|CW077966.1|CW077966 104_386_10894698_116_31912_378 Sorgh... 123 4e-026
gb|CW128047.1|CW128047 104_509_11113781_148_34748_023 Sorgh... 123 4e-026
gb|CW077967.1|CW077967 104_386_10894698_148_31911_378 Sorgh... 121 1e-025
gb|CW273595.1|CW273595 104_746_11403983_148_35368_094 Sorgh... 115 9e-024
gb|CF429879.1|CF429879 PH1_25_E11.b1_A002 Phosphorous-defic... 115 9e-024
gb|CW128046.1|CW128046 104_509_11113781_116_34744_023 Sorgh... 113 3e-023
gb|CN129079.1|CN129079 RHOH1_33_H09.b3_A002 Acid- and alkal... 113 3e-023
gb|CW121116.1|CW121116 104_498_11109715_148_34653_066 Sorgh... 109 5e-022
gb|CW217309.1|CW217309 104_650_11195588_116_37132_072 Sorgh... 103 3e-020
gb|CD232716.1|CD232716 SS1_1_H12.b1_A012 Salt-stressed seed... 100 5e-019
gb|CW034153.1|CW034153 104_264_10502381_115_30380 Sorghum m... 98 2e-018
gb|CW344133.1|CW344133 104_846_11487796_116_36192_004 Sorgh... 96 8e-018
gb|CW344134.1|CW344134 104_846_11487796_148_36191_004 Sorgh... 96 8e-018
gb|CW380206.1|CW380206 fsbb001f059o07f0 Sorghum methylation... 92 1e-016
gb|CW380207.1|CW380207 fsbb001f059o07k0 Sorghum methylation... 92 1e-016
gb|CW073480.1|CW073480 104_335_10779929_114_31363_329 Sorgh... 86 8e-015
gb|CW222301.1|CW222301 104_657_11202303_148_37174_052 Sorgh... 86 8e-015
gb|CW345534.1|CW345534 104_848_11488543_148_36210_022 Sorgh... 86 8e-015
gb|CD429206.1|CD429206 ETH1_3_C09.b1_A002 Ethylene-treated ... 86 8e-015
gb|CW426309.1|CW426309 fsbb001f137k03k0 Sorghum methylation... 78 2e-012
gb|CW471409.1|CW471409 fsbb001f225e14f0 Sorghum methylation... 74 3e-011
gb|CW194291.1|CW194291 104_617_11180020_116_36786_008 Sorgh... 68 2e-009
gb|CW353056.1|CW353056 fsbb001f015k03f0 Sorghum methylation... 68 2e-009
gb|BZ629316.1|BZ629316 ih65e07.b1 WGS-SbicolorF (DH5a methy... 50 4e-004
gb|CW078695.1|CW078695 104_396_10898313_114_31923_153 Sorgh... 50 4e-004
gb|BI211898.1|BI211898 IP1_62_G05.g1_A002 Immature pannicle... 50 4e-004
gb|CW071497.1|CW071497 104_323_10591543_116_30454 Sorghum m... 42 0.11
gb|CW134402.1|CW134402 104_518_11117286_148_34817_021 Sorgh... 42 0.11
gb|CW188425.1|CW188425 104_608_11173025_148_36730_075 Sorgh... 42 0.11
gb|CW201856.1|CW201856 104_627_11184789_116_37105_081 Sorgh... 42 0.11
gb|CW361238.1|CW361238 fsbb001f029k23k0 Sorghum methylation... 42 0.11
gb|CW395272.1|CW395272 fsbb001f083d19k0 Sorghum methylation... 42 0.11
gb|CW426521.1|CW426521 fsbb001f137p08f0 Sorghum methylation... 42 0.11
gb|BZ629586.1|BZ629586 ih67b09.g1 WGS-SbicolorF (DH5a methy... 40 0.42
gb|CW151660.1|CW151660 104_552_11144062_116_36322_087 Sorgh... 40 0.42
gb|CW151661.1|CW151661 104_552_11144062_148_36321_087 Sorgh... 40 0.42
gb|CW186390.1|CW186390 104_604_11166541_148_36706_057 Sorgh... 40 0.42
gb|CW257497.1|CW257497 104_723_11227368_116_35159_096 Sorgh... 40 0.42
gb|CW329828.1|CW329828 104_826_11480049_116_35995_039 Sorgh... 40 0.42
gb|CW329829.1|CW329829 104_826_11480049_148_35996_039 Sorgh... 40 0.42
gb|CW362994.1|CW362994 fsbb001f034f02k0 Sorghum methylation... 40 0.42
gb|CW369035.1|CW369035 fsbb001f043e07k0 Sorghum methylation... 40 0.42
gb|CW369672.1|CW369672 fsbb001f044d03f0 Sorghum methylation... 40 0.42
gb|CW395581.1|CW395581 fsbb001f083k18f0 Sorghum methylation... 40 0.42
gb|CL704682.2|CL704682 SP__Bb0025F24.r SP__Bb Sorghum propi... 40 0.42
gb|CL697397.2|CL697397 SP__Ba0010L05.f SP__Ba Sorghum propi... 40 0.42
gb|AW679762.1|AW679762 WS1_31_H09.g1_A002 Water-stressed 1 ... 40 0.42
gb|AW923529.1|AW923529 DG1_52_E01.g1_A002 Dark Grown 1 (DG1... 40 0.42
gb|BE358652.1|BE358652 DG1_30_F12.g1_A002 Dark Grown 1 (DG1... 40 0.42
gb|BE359329.1|BE359329 DG1_40_G01.b1_A002 Dark Grown 1 (DG1... 40 0.42
gb|BE598316.1|BE598316 PI1_81_H09.g1_A002 Pathogen induced ... 40 0.42
gb|BF421745.1|BF421745 FM1_16_B02.g1_A003 Floral-Induced Me... 40 0.42
gb|BF422088.1|BF422088 FM1_12_G04.g1_A003 Floral-Induced Me... 40 0.42
gb|BF480940.1|BF480940 FM1_15_C06.g1_A003 Floral-Induced Me... 40 0.42
gb|BF587947.1|BF587947 FM1_34_H03.g1_A003 Floral-Induced Me... 40 0.42
gb|BG049474.1|BG049474 OV1_20_D11.g1_A002 Ovary 1 (OV1) Sor... 40 0.42
gb|BG464793.1|BG464793 EM1_34_C06.g1_A002 Embryo 1 (EM1) So... 40 0.42
gb|BG557140.1|BG557140 EM1_43_B01.g1_A002 Embryo 1 (EM1) So... 40 0.42
gb|BG558575.1|BG558575 RHIZ2_57_F03.g1_A003 Rhizome2 (RHIZ2... 40 0.42
gb|BG558916.1|BG558916 RHIZ2_52_C09.g1_A003 Rhizome2 (RHIZ2... 40 0.42
gb|BG649248.1|BG649248 EM1_79_C06.g1_A002 Embryo 1 (EM1) So... 40 0.42
gb|BG355976.2|BG355976 EM1_18_H07.g1_A002 Embryo 1 (EM1) So... 40 0.42
gb|CD205454.1|CD205454 HS1_14_A05.b1_A012 Heat-shocked seed... 40 0.42
gb|CD226624.1|CD226624 CCC1_47_G03.b1_A007 Callus culture/c... 40 0.42
gb|CD228712.1|CD228712 CCC1_9_A11.b1_A007 Callus culture/ce... 40 0.42
gb|CD228805.1|CD228805 CCC1_10_H10.b1_A007 Callus culture/c... 40 0.42
gb|CF428259.1|CF428259 PH1_14_C06.b1_A002 Phosphorous-defic... 40 0.42
gb|CF479978.1|CF479978 POL1_63_B03.b1_A002 Pollen Sorghum b... 40 0.42
gb|CF483395.1|CF483395 POL1_22_A07.b1_A002 Pollen Sorghum b... 40 0.42
gb|CF484090.1|CF484090 POL1_3_C06.b1_A002 Pollen Sorghum bi... 40 0.42
gb|CF485244.1|CF485244 POL1_30_G09.b1_A002 Pollen Sorghum b... 40 0.42
gb|CF485874.1|CF485874 POL1_34_F04.b1_A002 Pollen Sorghum b... 40 0.42
gb|CF486158.1|CF486158 POL1_36_C07.b1_A002 Pollen Sorghum b... 40 0.42
gb|CF757788.1|CF757788 DSAF1_22_C10.g1_A011 Drought-stresse... 40 0.42
gb|CF760939.1|CF760939 DSAF1_68_H04.b1_A011 Drought-stresse... 40 0.42
gb|CF761339.1|CF761339 DSAF1_74_A02.b1_A011 Drought-stresse... 40 0.42
gb|CN130256.1|CN130256 RHOH1_40_F09.b1_A002 Acid- and alkal... 40 0.42
gb|CX607004.1|CX607004 ANR1_6_D08.b1_A002 Anaerobic roots S... 40 0.42
gb|CX609876.1|CX609876 ANR1_15_F10.b1_A002 Anaerobic roots ... 40 0.42
gb|CX613116.1|CX613116 GABR1_6_H01.b1_A002 GA- or brassinol... 40 0.42
>gb|CN145355.1|CN145355 WOUND1_28_A03.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_28_A03_A002 5', mRNA sequence
Length = 682
Score = 626 bits (316), Expect = e-177
Identities = 403/432 (93%)
Strand = Plus / Plus
Query: 240 ggagctgaagatcgtcgacccagacaccagcgcgtcgctgggacggaaccagccaggcga 299
|||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 251 ggagctcaagatcgtcgacccagacaccagcgagtcgctgggacgaaaccagccaggcga 310
Query: 300 gatatgcatccgcggcgaacaaatcatgaaaggttatctgaatgatccagaggcgacaaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 311 gatatgcatccgcggcgaacaaatcatgaaaggttatctgaatgatccagaagcgacaaa 370
Query: 360 gaacaccattgataaggacggatggctgcacactggggacattggttacgtggacgacga 419
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 371 gaacaccattgataaggatggatggctgcacactggggacattggttatgtggacgatga 430
Query: 420 cgacgagatcttcatcgttgacaggctgaaggagataatcaaatacaagggcttccaagt 479
||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 431 cgatgagatattcattgttgacaggctcaaggagataatcaaatacaagggcttccaagt 490
Query: 480 acctcctgcggagcttgaagcccttctcatcacacatcctgaaatcaaggatgccgctgt 539
|||||||||||| |||| ||||||||||| |||||||||||||| | |||||| || ||
Sbjct: 491 acctcctgcggaagttgaggcccttctcattacacatcctgaaattagggatgctgcagt 550
Query: 540 tgtctcgatgaaagatgaagtcgccggcgaagtcccggtggcattcattatacgcagtga 599
|||||| |||||||||||| | || ||||||||||| || ||||||||||||| |||||
Sbjct: 551 tgtctcaatgaaagatgaacttgctggcgaagtccctgttgcattcattatacagagtga 610
Query: 600 aggctctgagatcagtgagaacgagatcaagcagtttgttgcaaaggaggtcgtgttcta 659
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 611 aggctctgagattagtgagaacgagatcaaacagtttgttgcaaaggaggtcgtgttcta 670
Query: 660 caagaggatcaa 671
||||||||||||
Sbjct: 671 caagaggatcaa 682
>gb|CN143608.1|CN143608 WOUND1_17_G06.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_17_G06_A002 3', mRNA sequence
Length = 478
Score = 359 bits (181), Expect = 4e-097
Identities = 244/265 (92%)
Strand = Plus / Plus
Query: 526 aaggatgccgctgttgtctcgatgaaagatgaagtcgccggcgaagtcccggtggcattc 585
|||||||| || |||||||| |||||||||||| | || || |||||||| || ||||||
Sbjct: 4 aaggatgctgcagttgtctcaatgaaagatgaacttgctggggaagtccctgttgcattc 63
Query: 586 attatacgcagtgaaggctctgagatcagtgagaacgagatcaagcagtttgttgcaaag 645
|||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct: 64 attatacggagtgaaggctctgagattagtgagaacgagatcaaacattttgttgcaaag 123
Query: 646 gaggtcgtgttctacaagaggatcaacagagttttcttcacggattctatcccgaagaat 705
||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 124 gaggtcgtgttctccaagaggatcaacagagttttcttcacggattccattccgaagaat 183
Query: 706 ccctccggcaagattcttaggaaggacctgagagcgcggcttgccgcgggcatcccgagc 765
||||||||||||||| |||||||||||||||||||||||||||| |||| ||| ||||||
Sbjct: 184 ccctccggcaagatttttaggaaggacctgagagcgcggcttgctgcggccattccgagc 243
Query: 766 agtgacaacacacagtccaaaagtt 790
||||||||||| |||||||||||||
Sbjct: 244 agtgacaacacccagtccaaaagtt 268
Score = 81.8 bits (41), Expect = 1e-013
Identities = 133/161 (82%), Gaps = 17/161 (10%)
Strand = Plus / Plus
Query: 849 tcatgagatggcaatggtatacacaaaaacgccaagcggtcgttatcgattcttctagat 908
||||||||||||||||||||| | ||||| |||||||| ||| ||| ||||||| |||
Sbjct: 330 tcatgagatggcaatggtatatataaaaaggccaagcgatcgatattgattcttttag-- 387
Query: 909 gggcaagggtaaggtatacttcgtttg----tgtccgacatattatgtatttgtatcatg 964
| ||||||||||||||| ||||| ||||||||| |||||||||||||||||
Sbjct: 388 ----aggggtaaggtatactttgtttgtttctgtccgaca---tatgtatttgtatcatg 440
Query: 965 tatagata-cgttttgttgacaacaagtgctaattataatg 1004
|||||||| |||| |||||||||| |||| |||||||||
Sbjct: 441 tatagatatcgtt---ttgacaacaaatgctgattataatg 478
>gb|CL190993.1|CL190993 104_409_10906471_114_32488_022 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906471, DNA
sequence
Length = 759
Score = 319 bits (161), Expect = 3e-085
Identities = 203/217 (93%)
Strand = Plus / Minus
Query: 330 aggttatctgaatgatccagaggcgacaaagaacaccattgataaggacggatggctgca 389
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 569 aggttatctgaatgatccagaagcgacaaagaacaccattgataaggatggatggctgca 510
Query: 390 cactggggacattggttacgtggacgacgacgacgagatcttcatcgttgacaggctgaa 449
|||||||||||||||||| |||||||| ||||| ||||| ||||| ||||||||||| ||
Sbjct: 509 cactggggacattggttatgtggacgatgacgatgagatattcattgttgacaggctcaa 450
Query: 450 ggagataatcaaatacaagggcttccaagtacctcctgcggagcttgaagcccttctcat 509
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 449 ggagataatcaaatacaagggcttccaagtacctcctgcggaacttgaggcccttctcat 390
Query: 510 cacacatcctgaaatcaaggatgccgctgttgtctcg 546
|||||||||||||| |||||||| || |||||||||
Sbjct: 389 tacacatcctgaaattaaggatgctgcagttgtctcg 353
Score = 143 bits (72), Expect = 4e-032
Identities = 96/104 (92%)
Strand = Plus / Minus
Query: 547 atgaaagatgaagtcgccggcgaagtcccggtggcattcattatacgcagtgaaggctct 606
|||||||||||| | || ||||||||||| || |||||||||||||| ||||||||||||
Sbjct: 248 atgaaagatgaacttgctggcgaagtccctgttgcattcattatacggagtgaaggctct 189
Query: 607 gagatcagtgagaacgagatcaagcagtttgttgcaaaggaggt 650
||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 188 gagattagtgagaacgagatcaaacagtttgttgcaaaggaggt 145
>gb|CW331181.1|CW331181 104_828_11480770_148_36025_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480770, DNA
sequence
Length = 694
Score = 319 bits (161), Expect = 3e-085
Identities = 203/217 (93%)
Strand = Plus / Plus
Query: 330 aggttatctgaatgatccagaggcgacaaagaacaccattgataaggacggatggctgca 389
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 110 aggttatctgaatgatccagaagcgacaaagaacaccattgataaggatggatggctgca 169
Query: 390 cactggggacattggttacgtggacgacgacgacgagatcttcatcgttgacaggctgaa 449
|||||||||||||||||| |||||||| ||||| ||||| ||||| ||||||||||| ||
Sbjct: 170 cactggggacattggttatgtggacgatgacgatgagatattcattgttgacaggctcaa 229
Query: 450 ggagataatcaaatacaagggcttccaagtacctcctgcggagcttgaagcccttctcat 509
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 230 ggagataatcaaatacaagggcttccaagtacctcctgcggaacttgaggcccttctcat 289
Query: 510 cacacatcctgaaatcaaggatgccgctgttgtctcg 546
|||||||||||||| |||||||| || |||||||||
Sbjct: 290 tacacatcctgaaattaaggatgctgcagttgtctcg 326
Score = 143 bits (72), Expect = 4e-032
Identities = 96/104 (92%)
Strand = Plus / Plus
Query: 547 atgaaagatgaagtcgccggcgaagtcccggtggcattcattatacgcagtgaaggctct 606
|||||||||||| | || ||||||||||| || |||||||||||||| ||||||||||||
Sbjct: 431 atgaaagatgaacttgctggcgaagtccctgttgcattcattatacggagtgaaggctct 490
Query: 607 gagatcagtgagaacgagatcaagcagtttgttgcaaaggaggt 650
||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 491 gagattagtgagaacgagatcaaacagtttgttgcaaaggaggt 534
>gb|CL190994.1|CL190994 104_409_10906471_116_32496_022 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906471, DNA
sequence
Length = 737
Score = 303 bits (153), Expect = 2e-080
Identities = 202/217 (93%), Gaps = 1/217 (0%)
Strand = Plus / Plus
Query: 330 aggttatctgaatgatccagaggcgacaaagaacaccattgataaggacggatggctgca 389
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 515 aggttatctgaatgatccagaagcgacaaagaacaccattgataaggatggatggctgca 574
Query: 390 cactggggacattggttacgtggacgacgacgacgagatcttcatcgttgacaggctgaa 449
|||||||||||||||||| |||||||| ||||| ||||| ||||| ||||||||||| ||
Sbjct: 575 cactggggacattggttatgtggacgatgacgatgagatattcattgttgacaggctcaa 634
Query: 450 ggagataatcaaatacaagggcttccaagtacctcctgcggagcttgaagcccttctcat 509
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 635 ggagataatcaaatacaagggcttccaagtacctcctgcggaacttgaggcccttctcat 694
Query: 510 cacacatcctgaaatcaaggatgccgctgttgtctcg 546
|||||||||||||| || ||||| || |||||||||
Sbjct: 695 tacacatcctgaaattaa-gatgctgcagttgtctcg 730
>gb|CW186709.1|CW186709 104_604_11166709_116_36709_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166709, DNA
sequence
Length = 694
Score = 287 bits (145), Expect = 1e-075
Identities = 166/173 (95%)
Strand = Plus / Minus
Query: 129 ccaggggtacgggatgaccgaggcggggcccgtgctggccatgtgcctggccttcgccaa 188
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 173 ccaggggtatgggatgaccgaggcagggcccgtgctggccatgtgcctggccttcgccaa 114
Query: 189 ggagccgttcgaggtcaagtccggctcctgtggcaccgtcgtcaggaacgcggagctgaa 248
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 113 ggagccgttcgaggtgaagtccggctcctgcggcaccgtcgtcaggaacgcggagctcaa 54
Query: 249 gatcgtcgacccagacaccagcgcgtcgctgggacggaaccagccaggcgaga 301
||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 53 gatcgtcgacccagacaccagcgagtcgctgggacgaaaccagccaggcgaga 1
>gb|CX613435.1|CX613435 GABR1_8_D10.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_8_D10_A002 3', mRNA sequence
Length = 693
Score = 266 bits (134), Expect = 4e-069
Identities = 377/458 (82%)
Strand = Plus / Plus
Query: 283 cggaaccagccaggcgagatatgcatccgcggcgaacaaatcatgaaaggttatctgaat 342
||||||||||| |||||||| |||||||||||||| || |||||||||||||| |||||
Sbjct: 3 cggaaccagcccggcgagatctgcatccgcggcgagcagatcatgaaaggttacctgaac 62
Query: 343 gatccagaggcgacaaagaacaccattgataaggacggatggctgcacactggggacatt 402
|| | ||| |||||||||||||||| || |||||||| ||||||||||| || |||||
Sbjct: 63 gaccttgagtcgacaaagaacaccatcgacaaggacggctggctgcacaccggcgacatc 122
Query: 403 ggttacgtggacgacgacgacgagatcttcatcgttgacaggctgaaggagataatcaaa 462
|| || || |||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct: 123 ggctatgtcgacgacgacgacgagatcttcatcgtcgacaggctcaaggagatcatcaag 182
Query: 463 tacaagggcttccaagtacctcctgcggagcttgaagcccttctcatcacacatcctgaa 522
|||||||| ||||| || || || || ||||| || || || |||||||| || || ||
Sbjct: 183 tacaaggggttccaggtgccgccggccgagctcgaggcgctcctcatcacgcacccggag 242
Query: 523 atcaaggatgccgctgttgtctcgatgaaagatgaagtcgccggcgaagtcccggtggca 582
|||||||| ||||| || || || ||||| ||||| | || || ||| ||||||| ||
Sbjct: 243 atcaaggacgccgccgtcgtgtcaatgaaggatgatcttgctggtgaaatcccggtcgcc 302
Query: 583 ttcattatacgcagtgaaggctctgagatcagtgagaacgagatcaagcagtttgttgca 642
||||| | || | ||||||||||| ||| ||| | ||||||||||| ||||| ||
Sbjct: 303 ttcatcgtgcggaccgaaggctctgaagtcaccgaggatgagatcaagcaatttgtcgcc 362
Query: 643 aaggaggtcgtgttctacaagaggatcaacagagttttcttcacggattctatcccgaag 702
|||||||| || |||||||||| |||| ||| ||||||||||| || || ||||| |||
Sbjct: 363 aaggaggtggttttctacaagaagatccacaaggttttcttcactgaatccatccccaag 422
Query: 703 aatccctccggcaagattcttaggaaggacctgagagc 740
|| || ||||||||||| || ||||||||| |||||||
Sbjct: 423 aacccgtccggcaagatcctaaggaaggacttgagagc 460
>gb|CW331180.1|CW331180 104_828_11480770_116_36026_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480770, DNA
sequence
Length = 683
Score = 254 bits (128), Expect = 1e-065
Identities = 140/144 (97%)
Strand = Plus / Minus
Query: 647 aggtcgtgttctacaagaggatcaacagagttttcttcacggattctatcccgaagaatc 706
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 250 aggtcgtgttctacaagaggatcaacagagttttcttcacggattccattccgaagaatc 191
Query: 707 cctccggcaagattcttaggaaggacctgagagcgcggcttgccgcgggcatcccgagca 766
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 190 cctccggcaagattcttaggaaggacctgagagcgcggcttgctgcgggcattccgagca 131
Query: 767 gtgacaacacacagtccaaaagtt 790
||||||||||||||||||||||||
Sbjct: 130 gtgacaacacacagtccaaaagtt 107
Score = 143 bits (72), Expect = 4e-032
Identities = 96/104 (92%)
Strand = Plus / Minus
Query: 547 atgaaagatgaagtcgccggcgaagtcccggtggcattcattatacgcagtgaaggctct 606
|||||||||||| | || ||||||||||| || |||||||||||||| ||||||||||||
Sbjct: 579 atgaaagatgaacttgctggcgaagtccctgttgcattcattatacggagtgaaggctct 520
Query: 607 gagatcagtgagaacgagatcaagcagtttgttgcaaaggaggt 650
||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 519 gagattagtgagaacgagatcaaacagtttgttgcaaaggaggt 476
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 849 tcatgagatggcaatggtatacacaaaaacgccaagcg 886
||||||||||||||||||||| | ||||| ||||||||
Sbjct: 45 tcatgagatggcaatggtatatataaaaaggccaagcg 8
>gb|CW186710.1|CW186710 104_604_11166709_148_36710_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166709, DNA
sequence
Length = 668
Score = 246 bits (124), Expect = 4e-063
Identities = 127/128 (99%)
Strand = Plus / Plus
Query: 6 caagagcccccgcgtgggcgccgccgacctcgcctccatccgcatggtcatgtccggcgc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 caagagcccccgcgtgggcgccgccgacctcgcctccatccgcatggtcatgtccggcgc 215
Query: 66 cgcgcccatggggaaggacctccaggacgcgttcatggccaagatccccaacgccgtgct 125
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ggcgcccatggggaaggacctccaggacgcgttcatggccaagatccccaacgccgtgct 275
Query: 126 cggccagg 133
||||||||
Sbjct: 276 cggccagg 283
>gb|CW493569.1|CW493569 fsbb001f284g08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f284g08, DNA
sequence
Length = 724
Score = 240 bits (121), Expect = 2e-061
Identities = 133/137 (97%)
Strand = Plus / Minus
Query: 647 aggtcgtgttctacaagaggatcaacagagttttcttcacggattctatcccgaagaatc 706
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 137 aggtcgtgttctacaagaggatcaacagagttttcttcacggattccattccgaagaatc 78
Query: 707 cctccggcaagattcttaggaaggacctgagagcgcggcttgccgcgggcatcccgagca 766
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 77 cctccggcaagattcttaggaaggacctgagagcgcggcttgctgcgggcattccgagca 18
Query: 767 gtgacaacacacagtcc 783
|||||||||||||||||
Sbjct: 17 gtgacaacacacagtcc 1
Score = 210 bits (106), Expect = 2e-052
Identities = 142/154 (92%)
Strand = Plus / Minus
Query: 393 tggggacattggttacgtggacgacgacgacgagatcttcatcgttgacaggctgaagga 452
||||||||||||||| |||||||| ||||| ||||| ||||| ||||||||||| |||||
Sbjct: 724 tggggacattggttatgtggacgatgacgatgagatattcattgttgacaggctcaagga 665
Query: 453 gataatcaaatacaagggcttccaagtacctcctgcggagcttgaagcccttctcatcac 512
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct: 664 gataatcaaatacaagggcttccaagtacctcctgcggaacttgaggcccttctcattac 605
Query: 513 acatcctgaaatcaaggatgccgctgttgtctcg 546
|||||||||||| |||||||| || |||||||||
Sbjct: 604 acatcctgaaattaaggatgctgcagttgtctcg 571
Score = 143 bits (72), Expect = 4e-032
Identities = 96/104 (92%)
Strand = Plus / Minus
Query: 547 atgaaagatgaagtcgccggcgaagtcccggtggcattcattatacgcagtgaaggctct 606
|||||||||||| | || ||||||||||| || |||||||||||||| ||||||||||||
Sbjct: 466 atgaaagatgaacttgctggcgaagtccctgttgcattcattatacggagtgaaggctct 407
Query: 607 gagatcagtgagaacgagatcaagcagtttgttgcaaaggaggt 650
||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 406 gagattagtgagaacgagatcaaacagtttgttgcaaaggaggt 363
>gb|CN129749.1|CN129749 RHOH1_37_E03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_37_E03_A002 3', mRNA sequence
Length = 850
Score = 236 bits (119), Expect = 4e-060
Identities = 332/403 (82%)
Strand = Plus / Plus
Query: 68 cgcccatggggaaggacctccaggacgcgttcatggccaagatccccaacgccgtgctcg 127
||||||||||||||||| || ||||||| |||||||||||| ||||| |||||||||||
Sbjct: 153 cgcccatggggaaggacatcgaggacgccttcatggccaagctccccggcgccgtgctcg 212
Query: 128 gccaggggtacgggatgaccgaggcggggcccgtgctggccatgtgcctggccttcgcca 187
| ||||||||||| ||||| ||||| ||||| |||||| ||||||||||||| |||||||
Sbjct: 213 gacaggggtacggcatgacggaggctgggccggtgctgtccatgtgcctggcgttcgcca 272
Query: 188 aggagccgttcgaggtcaagtccggctcctgtggcaccgtcgtcaggaacgcggagctga 247
||||||| ||| |||| ||||||||| | || ||||| || || | ||||| ||||| |
Sbjct: 273 aggagcccttcaaggtgaagtccggcgcgtgcggcacggtggtgcgcaacgccgagctca 332
Query: 248 agatcgtcgacccagacaccagcgcgtcgctgggacggaaccagccaggcgagatatgca 307
||||||||||||| |||||| || ||| || | ||||||| || || ||||| ||||
Sbjct: 333 agatcgtcgaccccgacaccggcaagtccctcgcccggaacctccccggagagatctgca 392
Query: 308 tccgcggcgaacaaatcatgaaaggttatctgaatgatccagaggcgacaaagaacacca 367
|| | ||| | || |||||||||||||| ||||| | || || ||||| ||||| | ||
Sbjct: 393 tcaggggccagcagatcatgaaaggttacctgaacaacccggatgcgacgaagaatagca 452
Query: 368 ttgataaggacggatggctgcacactggggacattggttacgtggacgacgacgacgaga 427
| || ||||| ||||||||||| || ||| | || | |||||||||||||||||||
Sbjct: 453 tcgacgctgacggttggctgcacaccggcgacgtcggctttgtggacgacgacgacgaga 512
Query: 428 tcttcatcgttgacaggctgaaggagataatcaaatacaaggg 470
|||||||||| |||||||| |||||||| || || ||||||||
Sbjct: 513 tcttcatcgtcgacaggcttaaggagatcataaagtacaaggg 555
>gb|CW359305.1|CW359305 fsbb001f026n23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f026n23, DNA
sequence
Length = 184
Score = 220 bits (111), Expect = 2e-055
Identities = 123/127 (96%)
Strand = Plus / Minus
Query: 207 gtccggctcctgtggcaccgtcgtcaggaacgcggagctgaagatcgtcgacccagacac 266
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 184 gtccggctcctgcggcaccgtcgtcaggaacgcggagctcaagatcgtcgacccagacac 125
Query: 267 cagcgcgtcgctgggacggaaccagccaggcgagatatgcatccgcggcgaacaaatcat 326
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 cagcgagtcgctgggacgaaaccagccaggcgagatatgcatccgcggcgaacaaatcat 65
Query: 327 gaaaggt 333
|||||||
Sbjct: 64 gaaaggt 58
>gb|CW359304.1|CW359304 fsbb001f026n23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f026n23, DNA
sequence
Length = 166
Score = 216 bits (109), Expect = 3e-054
Identities = 121/125 (96%)
Strand = Plus / Plus
Query: 209 ccggctcctgtggcaccgtcgtcaggaacgcggagctgaagatcgtcgacccagacacca 268
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ccggctcctgcggcaccgtcgtcaggaacgcggagctcaagatcgtcgacccagacacca 60
Query: 269 gcgcgtcgctgggacggaaccagccaggcgagatatgcatccgcggcgaacaaatcatga 328
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcgagtcgctgggacgaaaccagccaggcgagatatgcatccgcggcgaacaaatcatga 120
Query: 329 aaggt 333
|||||
Sbjct: 121 aaggt 125
>gb|BE597274.1|BE597274 PI1_70_C05.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 644
Score = 186 bits (94), Expect = 3e-045
Identities = 289/354 (81%)
Strand = Plus / Plus
Query: 117 cgccgtgctcggccaggggtacgggatgaccgaggcggggcccgtgctggccatgtgcct 176
|||||||||||| ||||||||||| ||||| ||||| ||||| |||||| ||||||||||
Sbjct: 8 cgccgtgctcggacaggggtacggcatgacggaggctgggccggtgctgtccatgtgcct 67
Query: 177 ggccttcgccaaggagccgttcgaggtcaagtccggctcctgtggcaccgtcgtcaggaa 236
||| |||||||||||||| ||| |||| ||||||||| | || ||||| || || | ||
Sbjct: 68 ggcgttcgccaaggagcccttcaaggtgaagtccggcgcgtgcggcacggtggtgcgcaa 127
Query: 237 cgcggagctgaagatcgtcgacccagacaccagcgcgtcgctgggacggaaccagccagg 296
||| ||||| |||||||||||||| |||||| || ||| || | ||||||| || ||
Sbjct: 128 cgccgagctcaagatcgtcgaccccgacaccggcaagtccctcgcccggaacctccccgg 187
Query: 297 cgagatatgcatccgcggcgaacaaatcatgaaaggttatctgaatgatccagaggcgac 356
||||| |||||| | ||| | || |||||||||||||| ||||| | || || |||||
Sbjct: 188 agagatctgcatcaggggccagcagatcatgaaaggttacctgaacaacccggatgcgac 247
Query: 357 aaagaacaccattgataaggacggatggctgcacactggggacattggttacgtggacga 416
||||| | ||| || ||||| ||||||||||| || ||| | || | ||||||||
Sbjct: 248 gaagaatagcatcgacgctgacggttggctgcacaccggcgacgtcggctttgtggacga 307
Query: 417 cgacgacgagatcttcatcgttgacaggctgaaggagataatcaaatacaaggg 470
||||||||||||||||||||| |||||||| |||||||| || || ||||||||
Sbjct: 308 cgacgacgagatcttcatcgtcgacaggcttaaggagatcataaagtacaaggg 361
>gb|BE597495.1|BE597495 PI1_70_C05.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 438
Score = 182 bits (92), Expect = 5e-044
Identities = 140/156 (89%)
Strand = Plus / Plus
Query: 58 tccggcgccgcgcccatggggaaggacctccaggacgcgttcatggccaagatccccaac 117
||||||||||||||||||||||||||| || ||||||| |||||||||||| ||||| |
Sbjct: 274 tccggcgccgcgcccatggggaaggacatcgaggacgccttcatggccaagctccccggc 333
Query: 118 gccgtgctcggccaggggtacgggatgaccgaggcggggcccgtgctggccatgtgcctg 177
||||||||||| ||||||||||| ||||| ||||| ||||| |||||| |||||||||||
Sbjct: 334 gccgtgctcggacaggggtacggcatgacggaggctgggccggtgctgtccatgtgcctg 393
Query: 178 gccttcgccaaggagccgttcgaggtcaagtccggc 213
|| |||||||||||||| ||| |||| |||||||||
Sbjct: 394 gcgttcgccaaggagcccttcaaggtgaagtccggc 429
>gb|BE359084.1|BE359084 DG1_38_H02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 384
Score = 155 bits (78), Expect = 1e-035
Identities = 288/358 (80%)
Strand = Plus / Plus
Query: 383 ggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgaca 442
|||||||||| || ||||| || || || |||||||||||||||||||||||||| ||||
Sbjct: 1 ggctgcacaccggcgacatcggctatgtcgacgacgacgacgagatcttcatcgtcgaca 60
Query: 443 ggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttgaagccc 502
|||| |||||||| ||||| |||||||| || || || || || || ||||| || || |
Sbjct: 61 ggctcaaggagatcatcaagtacaaggggttacaggtgccgccggccgagctcgaggcgc 120
Query: 503 ttctcatcacacatcctgaaatcaaggatgccgctgttgtctcgatgaaagatgaagtcg 562
| |||||||| || || || |||||||| ||||| || || || ||||| ||||| | |
Sbjct: 121 tcctcatcacgcacccggagatcaaggacgccgccgtcgtgtcaatgaaggatgatcttg 180
Query: 563 ccggcgaagtcccggtggcattcattatacgcagtgaaggctctgagatcagtgagaacg 622
| || ||| ||||||| || ||||| | || | ||||||||||| ||| ||| | |
Sbjct: 181 ctggtgaaatcccggtcgccttcatcgtgcggaccgaaggctctgaagtcaccgaggatg 240
Query: 623 agatcaagcagtttgttgcaaaggaggtcgtgttctacaagaggatcaacagagttttct 682
|||||||||| ||||| || |||||||| || |||||||||| |||| ||| |||||||
Sbjct: 241 agatcaagcaatttgtcgccaaggaggtggttttctacaagaagatccacaaggttttct 300
Query: 683 tcacggattctatcccgaagaatccctccggcaagattcttaggaaggacctgagagc 740
|| | || || ||||| ||||| || ||||||||||| || ||||||||| |||||||
Sbjct: 301 tctctgaatccatccccaagaacccgtccggcaagatcctaaggaaggacttgagagc 358
>gb|CD229384.1|CD229384 CCC1_15_E01.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_15_E01_A007 3', mRNA sequence
Length = 613
Score = 149 bits (75), Expect = 6e-034
Identities = 261/323 (80%)
Strand = Plus / Plus
Query: 148 gaggcggggcccgtgctggccatgtgcctggccttcgccaaggagccgttcgaggtcaag 207
||||| ||||| |||||| ||||||||||||| |||||||||||||| ||| |||| |||
Sbjct: 1 gaggctgggccggtgctgtccatgtgcctggcgttcgccaaggagcccttcaaggtgaag 60
Query: 208 tccggctcctgtggcaccgtcgtcaggaacgcggagctgaagatcgtcgacccagacacc 267
|||||| | || ||||| || || | ||||| ||||| |||||||||||||| ||||||
Sbjct: 61 tccggcgcgtgcggcacggtggtgcgcaacgccgagctcaagatcgtcgaccccgacacc 120
Query: 268 agcgcgtcgctgggacggaaccagccaggcgagatatgcatccgcggcgaacaaatcatg 327
|| ||| || | ||||||| || || ||||| |||||| | ||| | || ||||||
Sbjct: 121 ggcaagtccctcgcccggaacctccccggagagatctgcatcaggggccagcagatcatg 180
Query: 328 aaaggttatctgaatgatccagaggcgacaaagaacaccattgataaggacggatggctg 387
|||||||| ||||| | || || ||||| ||||| | ||| || ||||| ||||||
Sbjct: 181 aaaggttacctgaacaacccggatgcgacgaagaatagcatcgacgctgacggttggctg 240
Query: 388 cacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgacaggctg 447
||||| || ||| | || | ||||||||||||||||||||||||||||| ||||||||
Sbjct: 241 cacaccggcgacgtcggctttgtggacgacgacgacgagatcttcatcgtcgacaggctt 300
Query: 448 aaggagataatcaaatacaaggg 470
|||||||| || || ||||||||
Sbjct: 301 aaggagatcataaagtacaaggg 323
>gb|CW134050.1|CW134050 104_518_11117099_148_34816_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117099, DNA
sequence
Length = 664
Score = 143 bits (72), Expect = 4e-032
Identities = 156/184 (84%)
Strand = Plus / Minus
Query: 353 cgacaaagaacaccattgataaggacggatggctgcacactggggacattggttacgtgg 412
|||||||||||||||| || |||||||| ||||||||||| || ||||| || || || |
Sbjct: 522 cgacaaagaacaccatcgacaaggacggctggctgcacaccggcgacatcggctatgtcg 463
Query: 413 acgacgacgacgagatcttcatcgttgacaggctgaaggagataatcaaatacaagggct 472
||||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||| |
Sbjct: 462 acgacgacgacgagatcttcatcgtcgacaggctcaaggagatcatcaagtacaaggggt 403
Query: 473 tccaagtacctcctgcggagcttgaagcccttctcatcacacatcctgaaatcaaggatg 532
|||| || || || || ||||| || || || |||||||| || || || |||||||| |
Sbjct: 402 tccaggtgccgccggccgagctcgaggcgctcctcatcacgcacccggagatcaaggacg 343
Query: 533 ccgc 536
||||
Sbjct: 342 ccgc 339
>gb|CW194292.1|CW194292 104_617_11180020_148_36790_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11180020, DNA
sequence
Length = 721
Score = 143 bits (72), Expect = 4e-032
Identities = 156/184 (84%)
Strand = Plus / Plus
Query: 353 cgacaaagaacaccattgataaggacggatggctgcacactggggacattggttacgtgg 412
|||||||||||||||| || |||||||| ||||||||||| || ||||| || || || |
Sbjct: 21 cgacaaagaacaccatcgacaaggacggctggctgcacaccggcgacatcggctatgtcg 80
Query: 413 acgacgacgacgagatcttcatcgttgacaggctgaaggagataatcaaatacaagggct 472
||||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||| |
Sbjct: 81 acgacgacgacgagatcttcatcgtcgacaggctcaaggagatcatcaagtacaaggggt 140
Query: 473 tccaagtacctcctgcggagcttgaagcccttctcatcacacatcctgaaatcaaggatg 532
|||| || || || || ||||| || || || |||||||| || || || |||||||| |
Sbjct: 141 tccaggtgccgccggccgagctcgaggcgctcctcatcacgcacccggagatcaaggacg 200
Query: 533 ccgc 536
||||
Sbjct: 201 ccgc 204
Score = 67.9 bits (34), Expect = 2e-009
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 655 ttctacaagaggatcaacagagttttcttcacggattctatcccgaagaatccctccggc 714
|||||||||| |||| ||| ||||||||||| || || ||||| ||||| || ||||||
Sbjct: 593 ttctacaagaagatccacaaggttttcttcactgaatccatccccaagaacccgtccggc 652
Query: 715 aagattcttaggaaggacctgagagc 740
||||| || ||||||||| |||||||
Sbjct: 653 aagatcctaaggaaggacttgagagc 678
>gb|CW217310.1|CW217310 104_650_11195588_148_37131_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195588, DNA
sequence
Length = 684
Score = 141 bits (71), Expect = 2e-031
Identities = 74/75 (98%)
Strand = Plus / Minus
Query: 59 ccggcgccgcgcccatggggaaggacctccaggacgcgttcatggccaagatccccaacg 118
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccggcgcggcgcccatggggaaggacctccaggacgcgttcatggccaagatccccaacg 625
Query: 119 ccgtgctcggccagg 133
|||||||||||||||
Sbjct: 624 ccgtgctcggccagg 610
>gb|CW188088.1|CW188088 104_607_11172835_116_36721_068 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11172835, DNA sequence
Length = 621
Score = 133 bits (67), Expect = 4e-029
Identities = 70/71 (98%)
Strand = Plus / Minus
Query: 6 caagagcccccgcgtgggcgccgccgacctcgcctccatccgcatggtcatgtccggcgc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 caagagcccccgcgtgggcgccgccgacctcgcctccatccgcatggtcatgtccggcgc 12
Query: 66 cgcgcccatgg 76
||||||||||
Sbjct: 11 ggcgcccatgg 1
>gb|CW041863.1|CW041863 104_275_10506796_115_30285 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506796,
DNA sequence
Length = 601
Score = 127 bits (64), Expect = 2e-027
Identities = 67/68 (98%)
Strand = Plus / Minus
Query: 6 caagagcccccgcgtgggcgccgccgacctcgcctccatccgcatggtcatgtccggcgc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 caagagcccccgcgtgggcgccgccgacctcgcctccatccgcatggtcatgtccggcgc 9
Query: 66 cgcgccca 73
|||||||
Sbjct: 8 ggcgccca 1
>gb|CW157694.1|CW157694 104_561_11147661_116_36391_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11147661, DNA
sequence
Length = 611
Score = 125 bits (63), Expect = 9e-027
Identities = 182/222 (81%)
Strand = Plus / Minus
Query: 46 cgcatggtcatgtccggcgccgcgcccatggggaaggacctccaggacgcgttcatggcc 105
||||||||||| || || |||||||||||||| | ||| || |||||| | | |||
Sbjct: 499 cgcatggtcatctcgggggccgcgcccatgggcagggagctgcaggacntgctgcgcgcc 440
Query: 106 aagatccccaacgccgtgctcggccaggggtacgggatgaccgaggcggggcccgtgctg 165
||| ||||| |||||||||||| ||||||||||||||||| ||||| || ||||||||
Sbjct: 439 aagctccccggcgccgtgctcgggcaggggtacgggatgacagaggcaggacccgtgctc 380
Query: 166 gccatgtgcctggccttcgccaaggagccgttcgaggtcaagtccggctcctgtggcacc 225
| |||||| |||| || || ||||||||||| ||| ||||||||| |||| |||||
Sbjct: 379 tcaatgtgcatggcgtttgcaaaggagccgttgccggtgaagtccggcgcctgcggcacg 320
Query: 226 gtcgtcaggaacgcggagctgaagatcgtcgacccagacacc 267
|| || |||||||| ||||| |||||||||||||| ||||||
Sbjct: 319 gtggtgaggaacgccgagctcaagatcgtcgacccggacacc 278
Score = 40.1 bits (20), Expect = 0.42
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 382 tggctgcacactggggacattggttacgtggacgac 417
||||||||||| || |||||||| ||||| ||||||
Sbjct: 36 tggctgcacaccggagacattgggtacgtcgacgac 1
>gb|CW071495.1|CW071495 104_323_10591543_114_30471 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10591543, DNA
sequence
Length = 740
Score = 123 bits (62), Expect = 4e-026
Identities = 182/222 (81%)
Strand = Plus / Plus
Query: 46 cgcatggtcatgtccggcgccgcgcccatggggaaggacctccaggacgcgttcatggcc 105
||||||||||| || || |||||||||||||| | ||| || |||||| | | |||
Sbjct: 8 cgcatggtcatctcgggggccgcgcccatgggcagggagctgcaggacctgctgcgcgcc 67
Query: 106 aagatccccaacgccgtgctcggccaggggtacgggatgaccgaggcggggcccgtgctg 165
||| ||||| |||||||||||| ||||||||||||||||| ||||| || ||||||||
Sbjct: 68 aagctccccggcgccgtgctcgggcaggggtacgggatgacagaggcaggacccgtgctc 127
Query: 166 gccatgtgcctggccttcgccaaggagccgttcgaggtcaagtccggctcctgtggcacc 225
| |||||| |||| || || ||||||||||| ||| ||||||||| |||| |||||
Sbjct: 128 tcaatgtgcatggcgtttgcaaaggagccgttgccggtgaagtccggcgcctgcggcacg 187
Query: 226 gtcgtcaggaacgcggagctgaagatcgtcgacccagacacc 267
|| || |||||||| ||||| |||||||||||||| ||||||
Sbjct: 188 gtggtgaggaacgccgagctcaagatcgtcgacccggacacc 229
Score = 121 bits (61), Expect = 1e-025
Identities = 100/113 (88%)
Strand = Plus / Plus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||||||||| || |||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct: 471 tggctgcacaccggagacattgggtacgtcgacgacgacgacgagatcttcatcgtcgac 530
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagct 494
||||| |||||| | ||||| |||||||| |||||||| |||| ||||||||
Sbjct: 531 aggctcaaggagctcatcaagtacaaggggttccaagtcgctccggcggagct 583
>gb|CW077966.1|CW077966 104_386_10894698_116_31912_378 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894698, DNA
sequence
Length = 739
Score = 123 bits (62), Expect = 4e-026
Identities = 182/222 (81%)
Strand = Plus / Plus
Query: 46 cgcatggtcatgtccggcgccgcgcccatggggaaggacctccaggacgcgttcatggcc 105
||||||||||| || || |||||||||||||| | ||| || |||||| | | |||
Sbjct: 72 cgcatggtcatctcgggggccgcgcccatgggcagggagctgcaggacctgctgcgcgcc 131
Query: 106 aagatccccaacgccgtgctcggccaggggtacgggatgaccgaggcggggcccgtgctg 165
||| ||||| |||||||||||| ||||||||||||||||| ||||| || ||||||||
Sbjct: 132 aagctccccggcgccgtgctcgggcaggggtacgggatgacagaggcaggacccgtgctc 191
Query: 166 gccatgtgcctggccttcgccaaggagccgttcgaggtcaagtccggctcctgtggcacc 225
| |||||| |||| || || ||||||||||| ||| ||||||||| |||| |||||
Sbjct: 192 tcaatgtgcatggcgtttgcaaaggagccgttgccggtgaagtccggcgcctgcggcacg 251
Query: 226 gtcgtcaggaacgcggagctgaagatcgtcgacccagacacc 267
|| || |||||||| ||||| |||||||||||||| ||||||
Sbjct: 252 gtggtgaggaacgccgagctcaagatcgtcgacccggacacc 293
Score = 121 bits (61), Expect = 1e-025
Identities = 100/113 (88%)
Strand = Plus / Plus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||||||||| || |||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct: 535 tggctgcacaccggagacattgggtacgtcgacgacgacgacgagatcttcatcgtcgac 594
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagct 494
||||| |||||| | ||||| |||||||| |||||||| |||| ||||||||
Sbjct: 595 aggctcaaggagctcatcaagtacaaggggttccaagtcgctccggcggagct 647
>gb|CW128047.1|CW128047 104_509_11113781_148_34748_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11113781, DNA
sequence
Length = 628
Score = 123 bits (62), Expect = 4e-026
Identities = 182/222 (81%)
Strand = Plus / Plus
Query: 46 cgcatggtcatgtccggcgccgcgcccatggggaaggacctccaggacgcgttcatggcc 105
||||||||||| || || |||||||||||||| | ||| || |||||| | | |||
Sbjct: 201 cgcatggtcatctcgggggccgcgcccatgggcagggagctgcaggacctgctgcgcgcc 260
Query: 106 aagatccccaacgccgtgctcggccaggggtacgggatgaccgaggcggggcccgtgctg 165
||| ||||| |||||||||||| ||||||||||||||||| ||||| || ||||||||
Sbjct: 261 aagctccccggcgccgtgctcgggcaggggtacgggatgacagaggcaggacccgtgctc 320
Query: 166 gccatgtgcctggccttcgccaaggagccgttcgaggtcaagtccggctcctgtggcacc 225
| |||||| |||| || || ||||||||||| ||| ||||||||| |||| |||||
Sbjct: 321 tcaatgtgcatggcgtttgcaaaggagccgttgccggtgaagtccggcgcctgcggcacg 380
Query: 226 gtcgtcaggaacgcggagctgaagatcgtcgacccagacacc 267
|| || |||||||| ||||| |||||||||||||| ||||||
Sbjct: 381 gtggtgaggaacgccgagctcaagatcgtcgacccggacacc 422
>gb|CW077967.1|CW077967 104_386_10894698_148_31911_378 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894698, DNA
sequence
Length = 748
Score = 121 bits (61), Expect = 1e-025
Identities = 100/113 (88%)
Strand = Plus / Minus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||||||||| || |||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct: 343 tggctgcacaccggagacattgggtacgtcgacgacgacgacgagatcttcatcgtcgac 284
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagct 494
||||| |||||| | ||||| |||||||| |||||||| |||| ||||||||
Sbjct: 283 aggctcaaggagctcatcaagtacaaggggttccaagtcgctccggcggagct 231
Score = 119 bits (60), Expect = 6e-025
Identities = 138/164 (84%)
Strand = Plus / Minus
Query: 104 ccaagatccccaacgccgtgctcggccaggggtacgggatgaccgaggcggggcccgtgc 163
||||| ||||| |||||||||||| ||||||||||||||||| ||||| || |||||||
Sbjct: 748 ccaagctccccggcgccgtgctcgggcaggggtacgggatgacagaggcaggacccgtgc 689
Query: 164 tggccatgtgcctggccttcgccaaggagccgttcgaggtcaagtccggctcctgtggca 223
| | |||||| |||| || || ||||||||||| ||| ||||||||| |||| ||||
Sbjct: 688 tctcaatgtgcatggcgtttgcaaaggagccgttgccggtgaagtccggcgcctgcggca 629
Query: 224 ccgtcgtcaggaacgcggagctgaagatcgtcgacccagacacc 267
| || || |||||||| ||||| |||||||||||||| ||||||
Sbjct: 628 cggtggtgaggaacgccgagctcaagatcgtcgacccggacacc 585
>gb|CW273595.1|CW273595 104_746_11403983_148_35368_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403983, DNA
sequence
Length = 523
Score = 115 bits (58), Expect = 9e-024
Identities = 181/222 (81%)
Strand = Plus / Minus
Query: 46 cgcatggtcatgtccggcgccgcgcccatggggaaggacctccaggacgcgttcatggcc 105
||||||||||| || || |||||||||||||| | ||| || |||||| | | |||
Sbjct: 293 cgcatggtcatctcgggggccgcgcccatgggcagggagctgcaggacttgctgcgcgcc 234
Query: 106 aagatccccaacgccgtgctcggccaggggtacgggatgaccgaggcggggcccgtgctg 165
||| ||||| |||||||||||| ||||||||||||||||| ||||| || ||||||||
Sbjct: 233 aagctccccggcgccgtgctcgggcaggggtacgggatgacagaggcaggacccgtgctc 174
Query: 166 gccatgtgcctggccttcgccaaggagccgttcgaggtcaagtccggctcctgtggcacc 225
| |||||| |||| || || |||||||||| ||| ||||||||| |||| |||||
Sbjct: 173 tcaatgtgcatggcgtttgcaaaggagccgtagccggtgaagtccggcgcctgcggcacg 114
Query: 226 gtcgtcaggaacgcggagctgaagatcgtcgacccagacacc 267
|| || |||||||| ||||| |||||||||||||| ||||||
Sbjct: 113 gtggtgaggaacgccgagctcaagatcgtcgacccggacacc 72
>gb|CF429879.1|CF429879 PH1_25_E11.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_E11_A002 3', mRNA sequence
Length = 591
Score = 115 bits (58), Expect = 9e-024
Identities = 241/302 (79%)
Strand = Plus / Plus
Query: 439 gacaggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttgaa 498
|||||||| |||||||| ||||| |||||||| ||||| || || || || ||||| ||
Sbjct: 2 gacaggctcaaggagatcatcaagtacaaggggttccaggtgccgccggccgagctcgag 61
Query: 499 gcccttctcatcacacatcctgaaatcaaggatgccgctgttgtctcgatgaaagatgaa 558
|| || |||||||| || || || |||||||| ||||| || || || ||||| |||||
Sbjct: 62 gcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtgtcaatgaaggatgat 121
Query: 559 gtcgccggcgaagtcccggtggcattcattatacgcagtgaaggctctgagatcagtgag 618
| || || ||| ||||||| || ||||| | || | ||||||||||| ||| |||
Sbjct: 122 cttgctggtgaaatcccggtcgccttcatcgtgcggaccgaaggctctgaagtcaccgag 181
Query: 619 aacgagatcaagcagtttgttgcaaaggaggtcgtgttctacaagaggatcaacagagtt 678
| ||||||||||| ||||| || |||||||| || |||||||||| |||| ||| |||
Sbjct: 182 gatgagatcaagcaatttgtcgccaaggaggtggttttctacaagaagatccacaaggtt 241
Query: 679 ttcttcacggattctatcccgaagaatccctccggcaagattcttaggaaggacctgaga 738
|||||||| || || ||||| ||||| || ||||||||||| || ||||||||| |||||
Sbjct: 242 ttcttcactgaatccatccccaagaacccgtccggcaagatcctaaggaaggacttgaga 301
Query: 739 gc 740
||
Sbjct: 302 gc 303
>gb|CW128046.1|CW128046 104_509_11113781_116_34744_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11113781, DNA
sequence
Length = 650
Score = 113 bits (57), Expect = 3e-023
Identities = 99/113 (87%)
Strand = Plus / Minus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||||||||| || ||||| || ||||| |||||||||||||||||||||||||| |||
Sbjct: 599 tggctgcacaccggagacatggggtacgtcgacgacgacgacgagatcttcatcgtcgac 540
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagct 494
||||| |||||| | ||||| |||||||| |||||||| |||| ||||||||
Sbjct: 539 aggctcaaggagctcatcaagtacaaggggttccaagtcgctccggcggagct 487
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 712 ggcaagattcttaggaaggacctgagagc 740
||||||||||| |||||||| ||||||||
Sbjct: 159 ggcaagattctgaggaaggatctgagagc 131
>gb|CN129079.1|CN129079 RHOH1_33_H09.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_33_H09_A002 3', mRNA sequence
Length = 733
Score = 113 bits (57), Expect = 3e-023
Identities = 99/113 (87%)
Strand = Plus / Plus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
|||||| |||| || |||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct: 257 tggctggacaccggagacattgggtacgtcgacgacgacgacgagatcttcatcgtcgac 316
Query: 442 aggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagct 494
||||| |||||| | ||||| |||||||| |||||||| |||| ||||||||
Sbjct: 317 aggctcaaggagctcatcaagtacaaggggttccaagtcgctccggcggagct 369
Score = 99.6 bits (50), Expect = 5e-019
Identities = 116/138 (84%)
Strand = Plus / Plus
Query: 130 caggggtacgggatgaccgaggcggggcccgtgctggccatgtgcctggccttcgccaag 189
||||||||||||||||| ||||| || |||||||| | |||||| |||| || || |||
Sbjct: 5 caggggtacgggatgacagaggcaggacccgtgctctcaatgtgcatggcgtttgcaaag 64
Query: 190 gagccgttcgaggtcaagtccggctcctgtggcaccgtcgtcaggaacgcggagctgaag 249
|||||||| ||| ||||||||| |||| ||||| || || |||||||| ||||| |||
Sbjct: 65 gagccgttgccggtgaagtccggcgcctgcggcacggtggtgaggaacgccgagctcaag 124
Query: 250 atcgtcgacccagacacc 267
||||||||||| ||||||
Sbjct: 125 atcgtcgacccggacacc 142
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 712 ggcaagattcttaggaaggacctgagagc 740
||||||||||| |||||||| ||||||||
Sbjct: 587 ggcaagattctgaggaaggatctgagagc 615
>gb|CW121116.1|CW121116 104_498_11109715_148_34653_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109715, DNA
sequence
Length = 319
Score = 109 bits (55), Expect = 5e-022
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 79 aaggacctccaggacgcgttcatggccaagatccccaacgccgtgctcggccagg 133
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aaggacctccaggacgcgttcatggccaagatccccaacgccgtgctcggccagg 265
>gb|CW217309.1|CW217309 104_650_11195588_116_37132_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195588, DNA
sequence
Length = 601
Score = 103 bits (52), Expect = 3e-020
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 6 caagagcccccgcgtgggcgccgccgacctcgcctccatccgcatggtcatg 57
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 caagagcccccgcgtgggcgccgccgacctcgcctccatccgcatggtcatg 601
>gb|CD232716.1|CD232716 SS1_1_H12.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_1_H12_A012 3', mRNA sequence
Length = 559
Score = 99.6 bits (50), Expect = 5e-019
Identities = 239/302 (79%)
Strand = Plus / Plus
Query: 439 gacaggctgaaggagataatcaaatacaagggcttccaagtacctcctgcggagcttgaa 498
|||||||| |||||||| ||||| |||||||| ||||| || || || || ||||| ||
Sbjct: 2 gacaggctcaaggagatcatcaagtacaaggggttccaggtgccgccggccgagctcgag 61
Query: 499 gcccttctcatcacacatcctgaaatcaaggatgccgctgttgtctcgatgaaagatgaa 558
|| || |||||||| || || || |||||||| ||||| || || || ||||| |||||
Sbjct: 62 gcgctcctcatcacgcacccggagatcaaggacgccgccgtcgtgtcaatgaaggatgat 121
Query: 559 gtcgccggcgaagtcccggtggcattcattatacgcagtgaaggctctgagatcagtgag 618
| || || ||| | ||||| || ||||| | || | ||||||||||| ||| |||
Sbjct: 122 cttgctggtgaaattccggtcgccttcatcgtgcggaccgaaggctctgaagtcaccgag 181
Query: 619 aacgagatcaagcagtttgttgcaaaggaggtcgtgttctacaagaggatcaacagagtt 678
||||||||||| ||||| || |||||||| || |||||||||| |||| ||| |||
Sbjct: 182 ggtgagatcaagcaatttgtcgccaaggaggtggttttctacaagaagatccacaaggtt 241
Query: 679 ttcttcacggattctatcccgaagaatccctccggcaagattcttaggaaggacctgaga 738
|||||||| || || ||||| ||||| || ||||||||||| || ||||||||| |||||
Sbjct: 242 ttcttcactgaatccatccccaagaacccgtccggcaagatcctaaggaaggacttgaga 301
Query: 739 gc 740
||
Sbjct: 302 gc 303
>gb|CW034153.1|CW034153 104_264_10502381_115_30380 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502381, DNA
sequence
Length = 541
Score = 97.6 bits (49), Expect = 2e-018
Identities = 106/125 (84%)
Strand = Plus / Minus
Query: 412 gacgacgacgacgagatcttcatcgttgacaggctgaaggagataatcaaatacaagggc 471
|||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||
Sbjct: 525 gacgacgacgacgagatcttcatcgtcgacaggctcaaggagatcatcaagtacaagggg 466
Query: 472 ttccaagtacctcctgcggagcttgaagcccttctcatcacacatcctgaaatcaaggat 531
||||| || || || || ||||| || || || |||||||| || || || ||||||||
Sbjct: 465 ttccaggtgccgccggccgagctcgaggcgctcctcatcacgcacccggagatcaaggac 406
Query: 532 gccgc 536
|||||
Sbjct: 405 gccgc 401
>gb|CW344133.1|CW344133 104_846_11487796_116_36192_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11487796, DNA
sequence
Length = 518
Score = 95.6 bits (48), Expect = 8e-018
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 58 tccggcgccgcgcccatggggaaggacctccaggacgcgttcatggccaagatccccaac 117
||||||||||||||||||||||||||| || ||||||| |||||||||||| ||||| |
Sbjct: 246 tccggcgccgcgcccatggggaaggacatcgaggacgccttcatggccaagctccccggc 305
Query: 118 gccgtgctcggccagg 133
||||||||||| ||||
Sbjct: 306 gccgtgctcggacagg 321
>gb|CW344134.1|CW344134 104_846_11487796_148_36191_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11487796, DNA
sequence
Length = 652
Score = 95.6 bits (48), Expect = 8e-018
Identities = 69/76 (90%)
Strand = Plus / Minus
Query: 58 tccggcgccgcgcccatggggaaggacctccaggacgcgttcatggccaagatccccaac 117
||||||||||||||||||||||||||| || ||||||| |||||||||||| ||||| |
Sbjct: 638 tccggcgccgcgcccatggggaaggacatcgaggacgccttcatggccaagctccccggc 579
Query: 118 gccgtgctcggccagg 133
||||||||||| ||||
Sbjct: 578 gccgtgctcggacagg 563
>gb|CW380206.1|CW380206 fsbb001f059o07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f059o07, DNA
sequence
Length = 683
Score = 91.7 bits (46), Expect = 1e-016
Identities = 61/66 (92%)
Strand = Plus / Minus
Query: 130 caggggtacgggatgaccgaggcggggcccgtgctggccatgtgcctggccttcgccaag 189
||||||||||||||||| ||||| |||||||||||| ||||||||| ||| |||||||||
Sbjct: 659 caggggtacgggatgacggaggccgggcccgtgctgtccatgtgcccggcgttcgccaag 600
Query: 190 gagccg 195
||||||
Sbjct: 599 gagccg 594
Score = 65.9 bits (33), Expect = 7e-009
Identities = 84/101 (83%)
Strand = Plus / Minus
Query: 376 gacggatggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatc 435
||||| ||||| ||||| || ||||| || ||||| ||||||||||||||| ||||||||
Sbjct: 299 gacggctggctccacaccggcgacatcggctacgtcgacgacgacgacgaggtcttcatc 240
Query: 436 gttgacaggctgaaggagataatcaaatacaagggcttcca 476
|| ||| | | |||||| | ||||| | ||||||||||||
Sbjct: 239 gtcgaccgcgtcaaggagctcatcaagttcaagggcttcca 199
>gb|CW380207.1|CW380207 fsbb001f059o07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f059o07, DNA
sequence
Length = 603
Score = 91.7 bits (46), Expect = 1e-016
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 130 caggggtacgggatgaccgaggcggggcccgtgctggccatgtgcctggccttcgccaag 189
||||||||||||||||| ||||| |||||||||||| ||||||||| ||| |||||||||
Sbjct: 383 caggggtacgggatgacggaggccgggcccgtgctgtccatgtgcccggcgttcgccaag 442
Query: 190 gagccg 195
||||||
Sbjct: 443 gagccg 448
>gb|CW073480.1|CW073480 104_335_10779929_114_31363_329 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779929, DNA
sequence
Length = 743
Score = 85.7 bits (43), Expect = 8e-015
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 376 gacggatggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatc 435
||||| ||||||||||| || ||| | || | |||||||||||||||||||||||||||
Sbjct: 39 gacggttggctgcacaccggcgacgtcggctttgtggacgacgacgacgagatcttcatc 98
Query: 436 gttgacaggctgaaggagataatcaaatacaaggg 470
|| |||||||| |||||||| || || ||||||||
Sbjct: 99 gtcgacaggcttaaggagatcataaagtacaaggg 133
>gb|CW222301.1|CW222301 104_657_11202303_148_37174_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202303, DNA
sequence
Length = 690
Score = 85.7 bits (43), Expect = 8e-015
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 376 gacggatggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatc 435
||||| ||||||||||| || ||| | || | |||||||||||||||||||||||||||
Sbjct: 551 gacggttggctgcacaccggcgacgtcggctttgtggacgacgacgacgagatcttcatc 610
Query: 436 gttgacaggctgaaggagataatcaaatacaaggg 470
|| |||||||| |||||||| || || ||||||||
Sbjct: 611 gtcgacaggcttaaggagatcataaagtacaaggg 645
>gb|CW345534.1|CW345534 104_848_11488543_148_36210_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488543, DNA
sequence
Length = 632
Score = 85.7 bits (43), Expect = 8e-015
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 376 gacggatggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatc 435
||||| ||||||||||| || ||| | || | |||||||||||||||||||||||||||
Sbjct: 60 gacggttggctgcacaccggcgacgtcggctttgtggacgacgacgacgagatcttcatc 119
Query: 436 gttgacaggctgaaggagataatcaaatacaaggg 470
|| |||||||| |||||||| || || ||||||||
Sbjct: 120 gtcgacaggcttaaggagatcataaagtacaaggg 154
>gb|CD429206.1|CD429206 ETH1_3_C09.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_3_C09_A002 3', mRNA sequence
Length = 652
Score = 85.7 bits (43), Expect = 8e-015
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 376 gacggatggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatc 435
||||| ||||||||||| || ||| | || | |||||||||||||||||||||||||||
Sbjct: 68 gacggttggctgcacaccggcgacgtcggctttgtggacgacgacgacgagatcttcatc 127
Query: 436 gttgacaggctgaaggagataatcaaatacaaggg 470
|| |||||||| |||||||| || || ||||||||
Sbjct: 128 gtcgacaggcttaaggagatcataaagtacaaggg 162
>gb|CW426309.1|CW426309 fsbb001f137k03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f137k03, DNA
sequence
Length = 479
Score = 77.8 bits (39), Expect = 2e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 376 gacggatggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatc 435
||||| ||||||||||| || ||| | || | |||||||||||||||||||||||||||
Sbjct: 297 gacggttggctgcacaccggcgacgtcggctttgtggacgacgacgacgagatcttcatc 238
Query: 436 gttgacaggctgaaggagataatcaaatacaaggg 470
|| ||||||| |||||||| || || ||||||||
Sbjct: 237 gtcgacaggcctaaggagatcataaagtacaaggg 203
>gb|CW471409.1|CW471409 fsbb001f225e14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f225e14, DNA
sequence
Length = 182
Score = 73.8 bits (37), Expect = 3e-011
Identities = 76/89 (85%)
Strand = Plus / Plus
Query: 382 tggctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttgac 441
||||||||||| || ||| |||| ||||| |||||||||||||||||||||||| |||
Sbjct: 89 tggctgcacaccggagacgttgggtacgtctacgacgacgacgagatcttcatcggcgac 148
Query: 442 aggctgaaggagataatcaaatacaaggg 470
||||| | |||| | ||||| ||||||||
Sbjct: 149 aggctcagggagctcatcaagtacaaggg 177
>gb|CW194291.1|CW194291 104_617_11180020_116_36786_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11180020, DNA
sequence
Length = 688
Score = 67.9 bits (34), Expect = 2e-009
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 655 ttctacaagaggatcaacagagttttcttcacggattctatcccgaagaatccctccggc 714
|||||||||| |||| ||| ||||||||||| || || ||||| ||||| || ||||||
Sbjct: 270 ttctacaagaagatccacaaggttttcttcactgaatccatccccaagaacccgtccggc 211
Query: 715 aagattcttaggaaggacctgagagc 740
||||| || ||||||||| |||||||
Sbjct: 210 aagatcctaaggaaggacttgagagc 185
>gb|CW353056.1|CW353056 fsbb001f015k03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f015k03, DNA
sequence
Length = 665
Score = 67.9 bits (34), Expect = 2e-009
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 655 ttctacaagaggatcaacagagttttcttcacggattctatcccgaagaatccctccggc 714
|||||||||| |||| ||| ||||||||||| || || ||||| ||||| || ||||||
Sbjct: 278 ttctacaagaagatccacaaggttttcttcactgaatccatccccaagaacccgtccggc 219
Query: 715 aagattcttaggaaggacctgagagc 740
||||| || ||||||||| |||||||
Sbjct: 218 aagatcctaaggaaggacttgagagc 193
>gb|BZ629316.1|BZ629316 ih65e07.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih65e07 5', DNA sequence
Length = 668
Score = 50.1 bits (25), Expect = 4e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 412 gacgacgacgacgagatcttcatcgttgacaggctgaaggagataatcaaatacaagggc 471
|||||||||| ||| |||||||||| ||| || | |||||| | ||||| |||||||||
Sbjct: 173 gacgacgacggcgacgtcttcatcgtcgaccggatcaaggagctcatcaagtacaagggc 232
Query: 472 ttcca 476
|||||
Sbjct: 233 ttcca 237
>gb|CW078695.1|CW078695 104_396_10898313_114_31923_153 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898313, DNA
sequence
Length = 767
Score = 50.1 bits (25), Expect = 4e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 412 gacgacgacgacgagatcttcatcgttgacaggctgaaggagataatcaaatacaagggc 471
|||||||||| ||| |||||||||| ||| || | |||||| | ||||| |||||||||
Sbjct: 330 gacgacgacggcgacgtcttcatcgtcgaccggatcaaggagctcatcaagtacaagggc 389
Query: 472 ttcca 476
|||||
Sbjct: 390 ttcca 394
>gb|BI211898.1|BI211898 IP1_62_G05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 679
Score = 50.1 bits (25), Expect = 4e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 412 gacgacgacgacgagatcttcatcgttgacaggctgaaggagataatcaaatacaagggc 471
|||||||||| ||| |||||||||| ||| || | |||||| | ||||| |||||||||
Sbjct: 100 gacgacgacggcgacgtcttcatcgtcgaccggatcaaggagctcatcaagtacaagggc 159
Query: 472 ttcca 476
|||||
Sbjct: 160 ttcca 164
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 336,009
Number of Sequences: 832831
Number of extensions: 336009
Number of successful extensions: 107101
Number of sequences better than 0.5: 104
Number of HSP's better than 0.5 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106907
Number of HSP's gapped (non-prelim): 166
length of query: 1093
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1073
effective length of database: 474,703,049
effective search space: 509356371577
effective search space used: 509356371577
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)