BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437687.2.1
(1171 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX607108.1|CX607108 ANR1_6_F04.g1_A002 Anaerobic roots S... 1066 0.0
gb|CN146336.1|CN146336 WOUND1_39_D07.g1_A002 Wounded leaves... 922 0.0
gb|CX607022.1|CX607022 ANR1_6_F04.b1_A002 Anaerobic roots S... 910 0.0
gb|CN146258.1|CN146258 WOUND1_39_D07.b1_A002 Wounded leaves... 904 0.0
gb|CW151902.1|CW151902 104_552_11144196_148_36321_034 Sorgh... 662 0.0
gb|BF421232.1|BF421232 FM1_7_B08.g1_A003 Floral-Induced Mer... 644 0.0
gb|CF431288.1|CF431288 NIT1_5_F12.b1_A002 Nitrogen-deficien... 626 e-177
gb|BG050409.1|BG050409 FM1_53_G06.g1_A003 Floral-Induced Me... 620 e-176
gb|BG051375.1|BG051375 FM1_55_G05.g1_A003 Floral-Induced Me... 617 e-174
gb|BF421314.1|BF421314 FM1_7_B08.b1_A003 Floral-Induced Mer... 587 e-166
gb|CW260112.1|CW260112 104_726_11228790_148_35187_019 Sorgh... 581 e-164
gb|CW201862.1|CW201862 104_627_11184792_116_37108_082 Sorgh... 521 e-146
gb|CW406941.1|CW406941 fsbb001f100d03k0 Sorghum methylation... 488 e-136
gb|BG051053.1|BG051053 FM1_55_G05.b1_A003 Floral-Induced Me... 369 e-100
gb|CW260111.1|CW260111 104_726_11228790_116_35191_019 Sorgh... 355 6e-096
gb|BG050340.1|BG050340 FM1_53_G06.b1_A003 Floral-Induced Me... 341 9e-092
gb|CL181627.1|CL181627 104_392_10896876_148_31925_252 Sorgh... 252 6e-065
gb|CF073210.1|CF073210 FE1_28_E04.g1_A002 Iron-deficient se... 182 5e-044
gb|CW201863.1|CW201863 104_627_11184792_148_37107_082 Sorgh... 153 4e-035
gb|CW406940.1|CW406940 fsbb001f100d03f0 Sorghum methylation... 153 4e-035
gb|CL181626.1|CL181626 104_392_10896876_116_31926_252 Sorgh... 147 3e-033
gb|CW043252.1|CW043252 104_278_10507811_114_30254 Sorghum m... 147 3e-033
gb|CW149259.1|CW149259 104_548_11142395_116_36285_044 Sorgh... 68 2e-009
gb|CW029128.1|CW029128 104_256_10499499_114_30399 Sorghum m... 56 8e-006
gb|CW038342.1|CW038342 104_270_10504868_115_30386 Sorghum m... 56 8e-006
gb|CW088882.1|CW088882 104_434_10948378_115_32585_047 Sorgh... 56 8e-006
gb|CW096538.1|CW096538 104_462_11001950_116_34349_059 Sorgh... 56 8e-006
gb|CW179534.1|CW179534 104_593_11160150_148_36628_019 Sorgh... 56 8e-006
gb|CW318660.1|CW318660 104_811_11474070_116_35879_031 Sorgh... 56 8e-006
gb|CW355038.1|CW355038 fsbb001f019i03k0 Sorghum methylation... 56 8e-006
gb|CW371631.1|CW371631 fsbb001f047d01f0 Sorghum methylation... 56 8e-006
gb|CW421780.1|CW421780 fsbb001f130l24f0 Sorghum methylation... 56 8e-006
gb|AW564506.1|AW564506 LG1_295_D10.b1_A002 Light Grown 1 (L... 56 8e-006
gb|BE361754.1|BE361754 DG1_82_G01.b1_A002 Dark Grown 1 (DG1... 56 8e-006
gb|BE917749.1|BE917749 OV1_6_F07.b1_A002 Ovary 1 (OV1) Sorg... 56 8e-006
gb|BG052144.1|BG052144 RHIZ2_6_F11.b1_A003 Rhizome2 (RHIZ2)... 56 8e-006
gb|BG355452.1|BG355452 EM1_16_F05.b1_A002 Embryo 1 (EM1) So... 56 8e-006
gb|BG463957.1|BG463957 EM1_52_H10.b1_A002 Embryo 1 (EM1) So... 56 8e-006
gb|BI075831.1|BI075831 IP1_21_G05.b1_A002 Immature pannicle... 56 8e-006
gb|CD204043.1|CD204043 HS1_3_A10.g1_A012 Heat-shocked seedl... 56 8e-006
gb|CD230048.1|CD230048 SS1_40_H09.g1_A012 Salt-stressed see... 56 8e-006
gb|CD231880.1|CD231880 SS1_30_D11.g1_A012 Salt-stressed see... 56 8e-006
gb|CD432827.1|CD432827 ETH1_33_A06.g1_A002 Ethylene-treated... 56 8e-006
gb|CN134486.1|CN134486 OX1_26_D09.g1_A002 Oxidatively-stres... 56 8e-006
gb|CN136158.1|CN136158 OX1_41_D05.b1_A002 Oxidatively-stres... 56 8e-006
gb|CN136232.1|CN136232 OX1_41_D05.g1_A002 Oxidatively-stres... 56 8e-006
gb|CN151326.1|CN151326 WOUND1_74_G01.g1_A002 Wounded leaves... 56 8e-006
gb|CX611078.1|CX611078 ANR1_22_B08.g1_A002 Anaerobic roots ... 56 8e-006
gb|CX620549.1|CX620549 GABR1_52_C02.g1_A002 GA- or brassino... 56 8e-006
gb|CW179633.1|CW179633 104_593_11160203_116_36623_034 Sorgh... 54 3e-005
gb|CW029129.1|CW029129 104_256_10499499_116_30400 Sorghum m... 48 0.002
gb|CW030261.1|CW030261 104_258_10500149_114_30403 Sorghum m... 48 0.002
gb|BG052938.1|BG052938 RHIZ2_15_B11.b1_A003 Rhizome2 (RHIZ2... 48 0.002
gb|BG102282.1|BG102282 RHIZ2_24_D04.b1_A003 Rhizome2 (RHIZ2... 48 0.002
gb|BG557781.1|BG557781 EM1_53_A06.b1_A002 Embryo 1 (EM1) So... 48 0.002
gb|BI140900.1|BI140900 IP1_40_E08.b1_A002 Immature pannicle... 48 0.002
gb|BI245987.1|BI245987 IP1_66_C05.b1_A002 Immature pannicle... 48 0.002
gb|CD235047.1|CD235047 SS1_19_A02.g1_A012 Salt-stressed see... 48 0.002
gb|CF429677.1|CF429677 PH1_23_G06.g1_A002 Phosphorous-defic... 48 0.002
gb|CF429993.1|CF429993 PH1_25_G07.g1_A002 Phosphorous-defic... 48 0.002
gb|CF430353.1|CF430353 PH1_27_A08.g1_A002 Phosphorous-defic... 48 0.002
gb|CN142714.1|CN142714 WOUND1_11_F01.g1_A002 Wounded leaves... 48 0.002
gb|CN144206.1|CN144206 WOUND1_20_G04.g1_A002 Wounded leaves... 48 0.002
gb|CX607081.1|CX607081 ANR1_6_C12.g1_A002 Anaerobic roots S... 48 0.002
gb|CL174843.1|CL174843 104_379_10891942_148_31768_310 Sorgh... 46 0.007
gb|CW061554.1|CW061554 104_305_10520462_114_30152 Sorghum m... 46 0.007
gb|CW071439.1|CW071439 104_323_10591520_114_30474 Sorghum m... 46 0.007
gb|CW204510.1|CW204510 104_632_11186581_116_37060_055 Sorgh... 46 0.007
gb|CW471323.1|CW471323 fsbb001f225c11k0 Sorghum methylation... 46 0.007
gb|BG240213.1|BG240213 OV1_19_C06.b1_A002 Ovary 1 (OV1) Sor... 46 0.007
gb|CX623279.1|CX623279 GABR1_68_F03.g1_A002 GA- or brassino... 46 0.007
gb|DN551840.1|DN551840 pSPR-RT-A-H2_G06_S131 pSPR Sorghum p... 46 0.007
gb|CL174842.1|CL174842 104_379_10891942_116_31769_310 Sorgh... 44 0.029
gb|CL192764.1|CL192764 104_415_10940470_114_32264_081 Sorgh... 44 0.029
gb|BG047611.1|BG047611 OV1_26_A06.b1_A002 Ovary 1 (OV1) Sor... 44 0.029
gb|CW079177.1|CW079177 104_399_10899353_114_32392_079 Sorgh... 42 0.11
gb|CW107276.1|CW107276 104_477_11096492_148_34473_074 Sorgh... 42 0.11
gb|CW136108.1|CW136108 104_521_11118204_148_34841_048 Sorgh... 42 0.11
gb|CW392760.1|CW392760 fsbb001f079i10f0 Sorghum methylation... 42 0.11
gb|CW452245.1|CW452245 fsbb001f192l01f0 Sorghum methylation... 42 0.11
gb|CW464658.1|CW464658 fsbb001f215a12k0 Sorghum methylation... 42 0.11
gb|CW482801.1|CW482801 fsbb001f244b09f0 Sorghum methylation... 42 0.11
gb|BG556631.1|BG556631 EM1_37_F06.b1_A002 Embryo 1 (EM1) So... 42 0.11
gb|CC059314.1|CC059314 ii22a05.b1 WGS-SbicolorF (DH5a methy... 40 0.45
gb|CW148540.1|CW148540 104_547_11142010_116_35013_043 Sorgh... 40 0.45
gb|CW148541.1|CW148541 104_547_11142010_148_35009_043 Sorgh... 40 0.45
gb|CW342564.1|CW342564 104_844_11486942_116_36176_055 Sorgh... 40 0.45
gb|CW342565.1|CW342565 104_844_11486942_148_36175_055 Sorgh... 40 0.45
gb|CW497465.1|CW497465 fsbb001f290d14f0 Sorghum methylation... 40 0.45
gb|CN132704.1|CN132704 OX1_7_E09.g1_A002 Oxidatively-stress... 40 0.45
>gb|CX607108.1|CX607108 ANR1_6_F04.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_F04_A002 5', mRNA sequence
Length = 794
Score = 1067 bits (538), Expect = 0.0
Identities = 608/630 (96%), Gaps = 1/630 (0%)
Strand = Plus / Minus
Query: 435 tcaaacgacagaggttgtcccctcatgtcacagttgatgtgccacacctggccccagttg 494
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 794 tcaaacgacaggggttgtcccctcatgtcacagttgatgtgccacacctggccccaattg 735
Query: 495 cggcccatcgggagccatcccaactctgttcctttaatcttcacagatctaacatcaccc 554
|||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 734 cggcccatcgagagccatcctaactctgttcctttgatcttcacagatctaacatcaccc 675
Query: 555 gcgccaccaacgttgctgattaggactgtaaagaagaagtgccgaccgttgacagagaac 614
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 674 gcgccaccaacattgctgattaggactgtaaagaagaagtgccgaccattgacagagaac 615
Query: 615 ctgacaccaccttcacggaggcacttaacacggcggtactggattggcatgatgccggcc 674
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 614 ctgacaccaccttctcggaggcacttaacacggcggtactggatgggcatgatgccggcc 555
Query: 675 ttccagagcgcaatcttctcaaacgactggatggggaggaggaaatgatggttgggcggg 734
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 554 ttccagagcgcaatcttctcaaacgactggatggggaggaggaaatggtggttgggcggg 495
Query: 735 ttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttggtggcc 794
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 494 ttgcagtggccgccggcgtcggcggggaggccgtagtttggggcgcagaagttggtggcc 435
Query: 795 gtgacgactatggaggtgccggggaggcagtacttgagatcctcgacgcacttgacctcg 854
|||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 434 gtgacgacgattgaggtgccggggaggcagtacttgagatccttgacgcacttgacctcg 375
Query: 855 tagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagccccaccgtcgcc 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagccccaccgtcgcc 315
Query: 915 atcccgtacccgtgcttccccagatccccgaacccgcacgccccaccgatggcgtcttcg 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atcccgtacccgtgcttccccagatccccgaacccgcacgccccaccgatggcgtcttcg 255
Query: 975 gggtcggcggcgtagtaggatgccatgaacggggcgccactcggaaagcgcggaggagcc 1034
|||||||||||||||||||||||| || |||||||||||||||| |||||||| || ||
Sbjct: 254 gggtcggcggcgtagtaggatgccttg-gcggggcgccactcggagagcgcggacgaacc 196
Query: 1035 gtaggaggacgggtgctggtgtccggcggc 1064
|||||||||||||||||||||||||||||
Sbjct: 195 ataggaggacgggtgctggtgtccggcggc 166
Score = 99.6 bits (50), Expect = 6e-019
Identities = 53/54 (98%)
Strand = Plus / Minus
Query: 1091 agagcaggagccgcggagccatggctcccgactgctcgctgccggtgccggtat 1144
||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 agagcaggagcggcggagccatggctcccgactgctcgctgccggtgccggtat 89
>gb|CN146336.1|CN146336 WOUND1_39_D07.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_39_D07_A002 5', mRNA sequence
Length = 741
Score = 922 bits (465), Expect = 0.0
Identities = 556/585 (95%), Gaps = 1/585 (0%)
Strand = Plus / Minus
Query: 480 acctggccccagttgcggcccatcgggagccatcccaactctgttcctttaatcttcaca 539
||||||||||| ||||||||||||| ||||||||| |||||||||||||| |||||||||
Sbjct: 741 acctggccccaattgcggcccatcgagagccatcctaactctgttcctttgatcttcaca 682
Query: 540 gatctaacatcacccgcgccaccaacgttgctgattaggactgtaaagaagaagtgccga 599
||||||||||||| | || || ||| ||||||||||||||||||||||||| |||||||
Sbjct: 681 gatctaacatcacatgtgctactaacattgctgattaggactgtaaagaagatgtgccga 622
Query: 600 ccgttgacagagaacctgacaccaccttcacggaggcacttaacacggcggtactggatt 659
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 ccattgacagagaacctgacaccaccttcttggaggcacttaacacggcggtactggatg 562
Query: 660 ggcatgatgccggccttccagagcgcaatcttctcaaacgactggatggggaggaggaaa 719
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcatgatgccggccttccagagtgcaatcttctcaaacgactggatggggaggaggaaa 502
Query: 720 tgatggttgggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcg 779
|| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 501 tggtggttgggcgggttgcagtggccgccggcgtcggcggggaggccgtagtttggggcg 442
Query: 780 cagaagttggtggccgtgacgactatggaggtgccggggaggcagtacttgagatcctcg 839
||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||
Sbjct: 441 cagaagttggtggccgtgacgacgattgaggtgccggggaggcagtactcgagatcctcg 382
Query: 840 acgcacttgacctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctc 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acgcacttgacctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctc 322
Query: 900 agccccaccgtcgccatcccgtacccgtgcttccccagatccccgaacccgcacgcccca 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccccaccgtcgccatcccgtacccgtgcttccccagatccccgaacccgcacgcccca 262
Query: 960 ccgatggcgtcttcggggtcggcggcgtagtaggatgccatgaacggggcgccactcgga 1019
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 261 ccgatggcgtcttcggggtcggcggcgtagtaggatgccttg-gcggggcgccactcgga 203
Query: 1020 aagcgcggaggagccgtaggaggacgggtgctggtgtccggcggc 1064
|||||||| || || |||||||||||||||||||||||||||||
Sbjct: 202 gagcgcggacgaaccataggaggacgggtgctggtgtccggcggc 158
Score = 99.6 bits (50), Expect = 6e-019
Identities = 53/54 (98%)
Strand = Plus / Minus
Query: 1091 agagcaggagccgcggagccatggctcccgactgctcgctgccggtgccggtat 1144
||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 agagcaggagcggcggagccatggctcccgactgctcgctgccggtgccggtat 81
>gb|CX607022.1|CX607022 ANR1_6_F04.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_F04_A002 3', mRNA sequence
Length = 718
Score = 910 bits (459), Expect = 0.0
Identities = 584/625 (93%), Gaps = 8/625 (1%)
Strand = Plus / Minus
Query: 109 cttctattttgaatgatacatcaagcctctttagtacaactatgaaggggacatggaaaa 168
|||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| ||||
Sbjct: 617 cttctattttcaatgatacatcaagcctctttagagcaactatgaagggtacatgaaaaa 558
Query: 169 ccatttatgaccaagagcaactatctgaggccttgcactaagtaattttctcctaataat 228
||||||||| | |||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 557 gcatttatgagccagagtaactatcttaggccctgcactaagtaattttctcctaataat 498
Query: 229 gatattacttgttctgcagaagtgcagagaatgtacaccacagcccaactcgtaggatca 288
|||||| ||||||||||||| | ||| |||||||||||||||||||||||||||
Sbjct: 497 gatattgcttgttctgcagagg-------aatatacaccacagcccaactcgtaggatca 445
Query: 289 gaacaaaaaatgagaaactgtaagctgatcttgtggcgctcattctctacagaagaaatt 348
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 444 gaacaaaaa-tgagaaactgtaagctgatcttgtggcactcattctctacagaagaaact 386
Query: 349 gcttccccgtgtatgtcttgccatactcccaatccttagggacgacgttgaaactggtca 408
||||||||||||||||||||||||||||||||||||| || || |||||||||||||| |
Sbjct: 385 gcttccccgtgtatgtcttgccatactcccaatccttgggcacaacgttgaaactggtga 326
Query: 409 gcgccttgccatcgctcgagctgagctcaaacgacagaggttgtcccctcatgtcacagt 468
| | |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 325 gtgtcttgccatcgcttgagctgagctcaaacgacaggggttgtcccctcatgtcacagt 266
Query: 469 tgatgtgccacacctggccccagttgcggcccatcgggagccatcccaactctgttcctt 528
|||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||
Sbjct: 265 tgatgtgccacacctggccccaattgcggcccatcgagagccatcctaactctgttcctt 206
Query: 529 taatcttcacagatctaacatcacccgcgccaccaacgttgctgattaggactgtaaaga 588
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 tgatcttcacagatctaacatcacccgcgccaccaacattgctgattaggactgtaaaga 146
Query: 589 agaagtgccgaccgttgacagagaacctgacaccaccttcacggaggcacttaacacggc 648
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 145 agaagtgccgaccattgacagagaacctgacaccaccttctcggaggcacttaacacggc 86
Query: 649 ggtactggattggcatgatgccggccttccagagcgcaatcttctcaaacgactggatgg 708
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 ggtactggatgggcatgatgccggccttccagagcgcaatcttctcaaacgactggatgg 26
Query: 709 ggaggaggaaatgatggttgggcgg 733
||||||||||||| |||||||||||
Sbjct: 25 ggaggaggaaatggtggttgggcgg 1
Score = 75.8 bits (38), Expect = 8e-012
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 46 atacagaaatgcagaaatacattatcattgcttgctaggtaaaatattgtaatacaacgg 105
||||||||||||||||| || | ||||| ||||| ||||||||||||||||||||||||
Sbjct: 694 atacagaaatgcagaaacactctgtcattacttgccaggtaaaatattgtaatacaacgg 635
Query: 106 ag 107
||
Sbjct: 634 ag 633
>gb|CN146258.1|CN146258 WOUND1_39_D07.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_39_D07_A002 3', mRNA sequence
Length = 686
Score = 904 bits (456), Expect = 0.0
Identities = 581/622 (93%), Gaps = 8/622 (1%)
Strand = Plus / Minus
Query: 109 cttctattttgaatgatacatcaagcctctttagtacaactatgaaggggacatggaaaa 168
|||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| ||||
Sbjct: 615 cttctattttcaatgatacatcaagcctctttagagcaactatgaagggtacatgaaaaa 556
Query: 169 ccatttatgaccaagagcaactatctgaggccttgcactaagtaattttctcctaataat 228
||||||||| | |||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 555 gcatttatgagccagagtaactatcttaggccctgcactaagtaattttctcctaataat 496
Query: 229 gatattacttgttctgcagaagtgcagagaatgtacaccacagcccaactcgtaggatca 288
|||||| ||||||||||||| | ||| |||||||||||||||||||||||||||
Sbjct: 495 gatattgcttgttctgcagagg-------aatatacaccacagcccaactcgtaggatca 443
Query: 289 gaacaaaaaatgagaaactgtaagctgatcttgtggcgctcattctctacagaagaaatt 348
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 442 gaacaaaaa-tgagaaactgtaagctgatcttgtggcactcattctctacagaagaaact 384
Query: 349 gcttccccgtgtatgtcttgccatactcccaatccttagggacgacgttgaaactggtca 408
||||||||||||||||||||||||||||||||||||| || || |||||||||||||| |
Sbjct: 383 gcttccccgtgtatgtcttgccatactcccaatccttgggcacaacgttgaaactggtga 324
Query: 409 gcgccttgccatcgctcgagctgagctcaaacgacagaggttgtcccctcatgtcacagt 468
| | |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 323 gtgtcttgccatcgcttgagctgagctcaaacgacaggggttgtcccctcatgtcacagt 264
Query: 469 tgatgtgccacacctggccccagttgcggcccatcgggagccatcccaactctgttcctt 528
|||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||
Sbjct: 263 tgatgtgccacacctggccccaattgcggcccatcgagagccatcctaactctgttcctt 204
Query: 529 taatcttcacagatctaacatcacccgcgccaccaacgttgctgattaggactgtaaaga 588
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 203 tgatcttcacagatctaacatcacccgcgccaccaacattgctgattaggactgtaaaga 144
Query: 589 agaagtgccgaccgttgacagagaacctgacaccaccttcacggaggcacttaacacggc 648
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 143 agaagtgccgaccattgacagagaacctgacaccaccttctcggaggcacttaacacggc 84
Query: 649 ggtactggattggcatgatgccggccttccagagcgcaatcttctcaaacgactggatgg 708
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 ggtactggatgggcatgatgccggccttccagagcgcaatcttctcaaacgactggatgg 24
Query: 709 ggaggaggaaatgatggttggg 730
||||||||||||| ||||||||
Sbjct: 23 ggaggaggaaatggtggttggg 2
Score = 63.9 bits (32), Expect = 3e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 52 aaatgcagaaatacattatcattgcttgctaggtaaaatattgtaatacaacggag 107
||||||||||| || | ||||| ||||| ||||||||||||||||||||||||||
Sbjct: 686 aaatgcagaaacactctgtcattacttgccaggtaaaatattgtaatacaacggag 631
>gb|CW151902.1|CW151902 104_552_11144196_148_36321_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11144196, DNA
sequence
Length = 694
Score = 662 bits (334), Expect = 0.0
Identities = 447/484 (92%), Gaps = 8/484 (1%)
Strand = Plus / Minus
Query: 109 cttctattttgaatgatacatcaagcctctttagtacaactatgaaggggacatggaaaa 168
|||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| ||||
Sbjct: 476 cttctattttcaatgatacatcaagcctctttagagcaactatgaagggtacatgaaaaa 417
Query: 169 ccatttatgaccaagagcaactatctgaggccttgcactaagtaattttctcctaataat 228
||||||||| | |||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 416 gcatttatgagccagagtaactatcttaggccctgcactaagtaattttctcctaataat 357
Query: 229 gatattacttgttctgcagaagtgcagagaatgtacaccacagcccaactcgtaggatca 288
|||||| ||||||||||||| | ||| |||||||||||||||||||||||||||
Sbjct: 356 gatattgcttgttctgcagagg-------aatatacaccacagcccaactcgtaggatca 304
Query: 289 gaacaaaaaatgagaaactgtaagctgatcttgtggcgctcattctctacagaagaaatt 348
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 303 gaacaaaaa-tgagaaactgtaagctgatcttgtggcactcattctctacagaagaaact 245
Query: 349 gcttccccgtgtatgtcttgccatactcccaatccttagggacgacgttgaaactggtca 408
||||||||||||||||||||||||||||||||||||| || || |||||||||||||| |
Sbjct: 244 gcttccccgtgtatgtcttgccatactcccaatccttgggcacaacgttgaaactggtga 185
Query: 409 gcgccttgccatcgctcgagctgagctcaaacgacagaggttgtcccctcatgtcacagt 468
| | |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 184 gtgtcttgccatcgcttgagctgagctcaaacgacaggggttgtcccctcatgtcacagt 125
Query: 469 tgatgtgccacacctggccccagttgcggcccatcgggagccatcccaactctgttcctt 528
|||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||
Sbjct: 124 tgatgtgccacacctggccccaattgcggcccatcgagagccatcctaactctgttcctt 65
Query: 529 taatcttcacagatctaacatcacccgcgccaccaacgttgctgattaggactgtaaaga 588
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 64 tgatcttcacagatctaacatcacccgcgccaccaacattgctgattaggactgtaaaga 5
Query: 589 agaa 592
||||
Sbjct: 4 agaa 1
Score = 75.8 bits (38), Expect = 8e-012
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 46 atacagaaatgcagaaatacattatcattgcttgctaggtaaaatattgtaatacaacgg 105
||||||||||||||||| || | ||||| ||||| ||||||||||||||||||||||||
Sbjct: 553 atacagaaatgcagaaacactctgtcattacttgccaggtaaaatattgtaatacaacgg 494
Query: 106 ag 107
||
Sbjct: 493 ag 492
>gb|BF421232.1|BF421232 FM1_7_B08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 488
Score = 644 bits (325), Expect = 0.0
Identities = 438/475 (92%), Gaps = 8/475 (1%)
Strand = Plus / Minus
Query: 109 cttctattttgaatgatacatcaagcctctttagtacaactatgaaggggacatggaaaa 168
|||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| ||||
Sbjct: 467 cttctattttcaatgatacatcaagcctctttagagcaactatgaagggtacatgaaaaa 408
Query: 169 ccatttatgaccaagagcaactatctgaggccttgcactaagtaattttctcctaataat 228
||||||||| | |||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 407 gcatttatgagccagagtaactatcttaggccctgcactaagtaattttctcctaataat 348
Query: 229 gatattacttgttctgcagaagtgcagagaatgtacaccacagcccaactcgtaggatca 288
|||||| ||||||||||||| | ||| |||||||||||||||||||||||||||
Sbjct: 347 gatattgcttgttctgcagagg-------aatatacaccacagcccaactcgtaggatca 295
Query: 289 gaacaaaaaatgagaaactgtaagctgatcttgtggcgctcattctctacagaagaaatt 348
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 294 gaacaaaaa-tgagaaactgtaagctgatcttgtggcactcattctctacagaagaaact 236
Query: 349 gcttccccgtgtatgtcttgccatactcccaatccttagggacgacgttgaaactggtca 408
| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct: 235 gtttccccgtgtatgtcttgccatactcccaatccttgggcacgacgttgaaactggtga 176
Query: 409 gcgccttgccatcgctcgagctgagctcaaacgacagaggttgtcccctcatgtcacagt 468
| | |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 175 gtgtcttgccatcgcttgagctgagctcaaacgacaggggttgtcccctcatgtcacagt 116
Query: 469 tgatgtgccacacctggccccagttgcggcccatcgggagccatcccaactctgttcctt 528
|||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||
Sbjct: 115 tgatgtgccacacctggccccaattgcggcccatcgagagccatcctaactctgttcctt 56
Query: 529 taatcttcacagatctaacatcacccgcgccaccaacgttgctgattaggactgt 583
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 55 tgatcttcacagatctaacatcacccgcgccaccaacattgctgattaggactgt 1
>gb|CF431288.1|CF431288 NIT1_5_F12.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_5_F12_A002 3', mRNA sequence
Length = 541
Score = 626 bits (316), Expect = e-177
Identities = 429/466 (92%), Gaps = 8/466 (1%)
Strand = Plus / Minus
Query: 109 cttctattttgaatgatacatcaagcctctttagtacaactatgaaggggacatggaaaa 168
|||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| ||||
Sbjct: 458 cttctattttcaatgatacatcaagcctctttagagcaactatgaagggtacatgaaaaa 399
Query: 169 ccatttatgaccaagagcaactatctgaggccttgcactaagtaattttctcctaataat 228
||||||||| | |||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 398 gcatttatgagccagagtaactatcttaggccctgcactaagtaattttctcctaataat 339
Query: 229 gatattacttgttctgcagaagtgcagagaatgtacaccacagcccaactcgtaggatca 288
|||||| ||||||||||||| | ||| |||||||||||||||||||||||||||
Sbjct: 338 gatattgcttgttctgcagagg-------aatatacaccacagcccaactcgtaggatca 286
Query: 289 gaacaaaaaatgagaaactgtaagctgatcttgtggcgctcattctctacagaagaaatt 348
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 285 gaacaaaaa-tgagaaactgtaagctgatcttgtggcactcattctctacagaagaaact 227
Query: 349 gcttccccgtgtatgtcttgccatactcccaatccttagggacgacgttgaaactggtca 408
||||||||||||||||||||||||||||||||||||| || || |||||||||||||| |
Sbjct: 226 gcttccccgtgtatgtcttgccatactcccaatccttgggcacaacgttgaaactggtga 167
Query: 409 gcgccttgccatcgctcgagctgagctcaaacgacagaggttgtcccctcatgtcacagt 468
| | |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 166 gtgtcttgccatcgcttgagctgagctcaaacgacaggggttgtcccctcatgtcacagt 107
Query: 469 tgatgtgccacacctggccccagttgcggcccatcgggagccatcccaactctgttcctt 528
|||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||
Sbjct: 106 tgatgtgccacacctggccccaattgcggcccatcgagagccatcctaactctgttcctt 47
Query: 529 taatcttcacagatctaacatcacccgcgccaccaacgttgctgat 574
| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 46 tgatcttcacagatctaacatcacccgcgccaccaacattgctgat 1
Score = 60.0 bits (30), Expect = 5e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 70 tcattgcttgctaggtaaaatattgtaatacaacggag 107
||||| ||||| ||||||||||||||||||||||||||
Sbjct: 511 tcattacttgccaggtaaaatattgtaatacaacggag 474
>gb|BG050409.1|BG050409 FM1_53_G06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 491
Score = 620 bits (313), Expect = e-176
Identities = 426/463 (92%), Gaps = 8/463 (1%)
Strand = Plus / Minus
Query: 109 cttctattttgaatgatacatcaagcctctttagtacaactatgaaggggacatggaaaa 168
|||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| ||||
Sbjct: 455 cttctattttcaatgatacatcaagcctctttagagcaactatgaagggtacatgaaaaa 396
Query: 169 ccatttatgaccaagagcaactatctgaggccttgcactaagtaattttctcctaataat 228
||||||||| | |||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 395 gcatttatgagccagagtaactatcttaggccctgcactaagtaattttctcctaataat 336
Query: 229 gatattacttgttctgcagaagtgcagagaatgtacaccacagcccaactcgtaggatca 288
|||||| ||||||||||||| | ||| |||||||||||||||||||||||||||
Sbjct: 335 gatattgcttgttctgcagagg-------aatatacaccacagcccaactcgtaggatca 283
Query: 289 gaacaaaaaatgagaaactgtaagctgatcttgtggcgctcattctctacagaagaaatt 348
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 282 gaacaaaaa-tgagaaactgtaagctgatcttgtggcactcattctctacagaagaaact 224
Query: 349 gcttccccgtgtatgtcttgccatactcccaatccttagggacgacgttgaaactggtca 408
| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct: 223 gtttccccgtgtatgtcttgccatactcccaatccttgggcacgacgttgaaactggtga 164
Query: 409 gcgccttgccatcgctcgagctgagctcaaacgacagaggttgtcccctcatgtcacagt 468
| | |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 163 gtgtcttgccatcgcttgagctgagctcaaacgacaggggttgtcccctcatgtcacagt 104
Query: 469 tgatgtgccacacctggccccagttgcggcccatcgggagccatcccaactctgttcctt 528
|||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||
Sbjct: 103 tgatgtgccacacctggccccaattgcggcccatcgagagccatcctaactctgttcctt 44
Query: 529 taatcttcacagatctaacatcacccgcgccaccaacgttgct 571
| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 43 tgatcttcacagatctaacatcacccgcgccaccaacattgct 1
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 87 aaatattgtaatacaacggag 107
|||||||||||||||||||||
Sbjct: 491 aaatattgtaatacaacggag 471
>gb|BG051375.1|BG051375 FM1_55_G05.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 459
Score = 617 bits (311), Expect = e-174
Identities = 427/465 (91%), Gaps = 8/465 (1%)
Strand = Plus / Minus
Query: 112 ctattttgaatgatacatcaagcctctttagtacaactatgaaggggacatggaaaacca 171
||||||| ||||||||||||||||||||||| ||||||||||||| ||||| |||| ||
Sbjct: 459 ctattttcaatgatacatcaagcctctttagagcaactatgaagggtacatgaaaaagca 400
Query: 172 tttatgaccaagagcaactatctgaggccttgcactaagtaattttctcctaataatgat 231
||||||| | | || |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 399 tttatgagccacagtaactatcttaggccctgcactaagtaattttctcctaataatgat 340
Query: 232 attacttgttctgcagaagtgcagagaatgtacaccacagcccaactcgtaggatcagaa 291
||| ||||||||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct: 339 attgcttgttctgcagagg-------aatatacaccacagcccaactcgtaggatcagaa 287
Query: 292 caaaaaatgagaaactgtaagctgatcttgtggcgctcattctctacagaagaaattgct 351
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct: 286 caaaaa-tgagaaactgtaagctgatcttgtggcactcattctctacagaagaaactgtt 228
Query: 352 tccccgtgtatgtcttgccatactcccaatccttagggacgacgttgaaactggtcagcg 411
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| || |
Sbjct: 227 tccccgtgtatgtcttgccatactcccaatccttgggcacgacgttgaaactggtgagtg 168
Query: 412 ccttgccatcgctcgagctgagctcaaacgacagaggttgtcccctcatgtcacagttga 471
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 167 tcttgccatcgcttgagctgagctcaaacgacaggggttgtcccctcatgtcacagttga 108
Query: 472 tgtgccacacctggccccagttgcggcccatcgggagccatcccaactctgttcctttaa 531
||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| |
Sbjct: 107 tgtgccacacctggccccaattgcggcccatcgagagccatcctaactctgttcctttga 48
Query: 532 tcttcacagatctaacatcacccgcgccaccaacgttgctgatta 576
|||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 47 tcttcacagatctaacatcacccgcgccaccaacattgctgatta 3
>gb|BF421314.1|BF421314 FM1_7_B08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 504
Score = 587 bits (296), Expect = e-166
Identities = 335/347 (96%), Gaps = 1/347 (0%)
Strand = Plus / Minus
Query: 718 aatgatggttgggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcgggg 777
|||| |||||||||||||||||||| |||||||||||||||| ||||||||||| || |
Sbjct: 504 aatggtggttgggcgggttgcagtgcccgccggcgtcggcggtgaggccgtagtttggng 445
Query: 778 cgcagaagttggtggccgtgacgactatggaggtgccggggaggcagtacttgagatcct 837
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 444 cgcagaagttggtggccgtgacgacgatggaggtgccggggaggcagtacttgagatcct 385
Query: 838 cgacgcacttgacctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgc 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cgacgcacttgacctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgc 325
Query: 898 tcagccccaccgtcgccatcccgtacccgtgcttccccagatccccgaacccgcacgccc 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcagccccaccgtcgccatcccgtacccgtgcttccccagatccccgaacccgcacgccc 265
Query: 958 caccgatggcgtcttcggggtcggcggcgtagtaggatgccatgaacggggcgccactcg 1017
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 264 caccgatggcgtcttcggggtcggcggcgtagtaggatgccttg-gcggggcgccactcg 206
Query: 1018 gaaagcgcggaggagccgtaggaggacgggtgctggtgtccggcggc 1064
|| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 205 gagagcgcggaggagccataggaggacgggtgctggtgtccggcggc 159
Score = 99.6 bits (50), Expect = 6e-019
Identities = 53/54 (98%)
Strand = Plus / Minus
Query: 1091 agagcaggagccgcggagccatggctcccgactgctcgctgccggtgccggtat 1144
||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 agagcaggagcggcggagccatggctcccgactgctcgctgccggtgccggtat 82
>gb|CW260112.1|CW260112 104_726_11228790_148_35187_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228790, DNA
sequence
Length = 687
Score = 581 bits (293), Expect = e-164
Identities = 311/317 (98%)
Strand = Plus / Plus
Query: 645 cggcggtactggattggcatgatgccggccttccagagcgcaatcttctcaaacgactgg 704
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 cggcggtactggatgggcatgatgccggccttccagagcgcaatcttctcaaacgactgg 243
Query: 705 atggggaggaggaaatgatggttgggcgggttgcagtggccgccggcgtcggcgggaagg 764
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 244 atggggaggaggaaatggtggttgggcgggttgcagtggccgccggcgtcggcggggagg 303
Query: 765 ccgtagttcggggcgcagaagttggtggccgtgacgactatggaggtgccggggaggcag 824
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 304 ccgtagtttggggcgcagaagttggtggccgtgacgacgattgaggtgccggggaggcag 363
Query: 825 tacttgagatcctcgacgcacttgacctcgtagcagccgccgcacgccgcgccgcgctcg 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tacttgagatcctcgacgcacttgacctcgtagcagccgccgcacgccgcgccgcgctcg 423
Query: 885 aacagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccg 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aacagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccg 483
Query: 945 aacccgcacgccccacc 961
|||||||||||||||||
Sbjct: 484 aacccgcacgccccacc 500
>gb|CW201862.1|CW201862 104_627_11184792_116_37108_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184792, DNA
sequence
Length = 701
Score = 521 bits (263), Expect = e-146
Identities = 314/331 (94%)
Strand = Plus / Plus
Query: 315 gatcttgtggcgctcattctctacagaagaaattgcttccccgtgtatgtcttgccatac 374
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 gatcttgtggcactcattctctacagaagaaactgcttccccgtgtatgtcttgccatac 60
Query: 375 tcccaatccttagggacgacgttgaaactggtcagcgccttgccatcgctcgagctgagc 434
||||||||||| || || |||||||||||||| || | |||||||||||| |||||||||
Sbjct: 61 tcccaatccttgggcacaacgttgaaactggtgagtgtcttgccatcgcttgagctgagc 120
Query: 435 tcaaacgacagaggttgtcccctcatgtcacagttgatgtgccacacctggccccagttg 494
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 121 tcaaacgacaggggttgtcccctcatgtcacagttgatgtgccacacctggccccaattg 180
Query: 495 cggcccatcgggagccatcccaactctgttcctttaatcttcacagatctaacatcaccc 554
|||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 181 cggcccatcgagagccatcctaactctgttcctttgatcttcacagatctaacatcaccc 240
Query: 555 gcgccaccaacgttgctgattaggactgtaaagaagaagtgccgaccgttgacagagaac 614
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 241 gcgccaccaacattgctgattaggactgtaaagaagaagtgccgaccattgacagagaac 300
Query: 615 ctgacaccaccttcacggaggcacttaacac 645
|||||||||||||| ||||||||||||||||
Sbjct: 301 ctgacaccaccttctcggaggcacttaacac 331
>gb|CW406941.1|CW406941 fsbb001f100d03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f100d03, DNA
sequence
Length = 736
Score = 488 bits (246), Expect = e-136
Identities = 261/266 (98%)
Strand = Plus / Plus
Query: 696 aacgactggatggggaggaggaaatgatggttgggcgggttgcagtggccgccggcgtcg 755
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 24 aacgactggatggggaggaggaaatggtggttgggcgggttgcagtggccgccggcgtcg 83
Query: 756 gcgggaaggccgtagttcggggcgcagaagttggtggccgtgacgactatggaggtgccg 815
||||| ||||||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct: 84 gcggggaggccgtagtttggggcgcagaagttggtggccgtgacgacgattgaggtgccg 143
Query: 816 gggaggcagtacttgagatcctcgacgcacttgacctcgtagcagccgccgcacgccgcg 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 gggaggcagtacttgagatcctcgacgcacttgacctcgtagcagccgccgcacgccgcg 203
Query: 876 ccgcgctcgaacagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttcccc 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ccgcgctcgaacagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttcccc 263
Query: 936 agatccccgaacccgcacgccccacc 961
||||||||||||||||||||||||||
Sbjct: 264 agatccccgaacccgcacgccccacc 289
Score = 147 bits (74), Expect = 3e-033
Identities = 99/106 (93%), Gaps = 1/106 (0%)
Strand = Plus / Plus
Query: 959 accgatggcgtcttcggggtcggcggcgtagtaggatgccatgaacggggcgccactcgg 1018
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 565 accgatggcgtcttcggggtcggcggcgtagtaggatgccttgg-cggggcgccactcgg 623
Query: 1019 aaagcgcggaggagccgtaggaggacgggtgctggtgtccggcggc 1064
| |||||||| || || |||||||||||||||||||||||||||||
Sbjct: 624 agagcgcggacgaaccataggaggacgggtgctggtgtccggcggc 669
Score = 79.8 bits (40), Expect = 5e-013
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 1091 agagcaggagccgcggagccatggctcccgactgctcgctgccg 1134
||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 693 agagcaggagcggcggagccatggctcccgactgctcgctgccg 736
>gb|BG051053.1|BG051053 FM1_55_G05.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 367
Score = 369 bits (186), Expect = e-100
Identities = 205/210 (97%), Gaps = 1/210 (0%)
Strand = Plus / Minus
Query: 855 tagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagccccaccgtcgcc 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagccccaccgtcgcc 308
Query: 915 atcccgtacccgtgcttccccagatccccgaacccgcacgccccaccgatggcgtcttcg 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 atcccgtacccgtgcttccccagatccccgaacccgcacgccccaccgatggcgtcttcg 248
Query: 975 gggtcggcggcgtagtaggatgccatgaacggggcgccactcggaaagcgcggaggagcc 1034
|||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||
Sbjct: 247 gggtcggcggcgtagtaggatgccttg-gcggggcgccactcggagagcgcggaggagcc 189
Query: 1035 gtaggaggacgggtgctggtgtccggcggc 1064
|||||||||||||||||||||||||||||
Sbjct: 188 ataggaggacgggtgctggtgtccggcggc 159
Score = 99.6 bits (50), Expect = 6e-019
Identities = 53/54 (98%)
Strand = Plus / Minus
Query: 1091 agagcaggagccgcggagccatggctcccgactgctcgctgccggtgccggtat 1144
||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 agagcaggagcggcggagccatggctcccgactgctcgctgccggtgccggtat 82
>gb|CW260111.1|CW260111 104_726_11228790_116_35191_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228790, DNA
sequence
Length = 615
Score = 355 bits (179), Expect = 6e-096
Identities = 191/195 (97%)
Strand = Plus / Minus
Query: 767 gtagttcggggcgcagaagttggtggccgtgacgactatggaggtgccggggaggcagta 826
|||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 615 gtagtttggggcgcagaagttggtggccgtgacgacgatgagggtgccggggaggcagta 556
Query: 827 cttgagatcctcgacgcacttgacctcgtagcagccgccgcacgccgcgccgcgctcgaa 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cttgagatcctcgacgcacttgacctcgtagcagccgccgcacgccgcgccgcgctcgaa 496
Query: 887 cagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccgaa 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccgaa 436
Query: 947 cccgcacgccccacc 961
|||||||||||||||
Sbjct: 435 cccgcacgccccacc 421
Score = 147 bits (74), Expect = 3e-033
Identities = 99/106 (93%), Gaps = 1/106 (0%)
Strand = Plus / Minus
Query: 959 accgatggcgtcttcggggtcggcggcgtagtaggatgccatgaacggggcgccactcgg 1018
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 145 accgatggcgtcttcggggtcggcggcgtagtaggatgccttgg-cggggcgccactcgg 87
Query: 1019 aaagcgcggaggagccgtaggaggacgggtgctggtgtccggcggc 1064
| |||||||| || || |||||||||||||||||||||||||||||
Sbjct: 86 agagcgcggacgaaccataggaggacgggtgctggtgtccggcggc 41
>gb|BG050340.1|BG050340 FM1_53_G06.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 353
Score = 341 bits (172), Expect = 9e-092
Identities = 191/196 (97%), Gaps = 1/196 (0%)
Strand = Plus / Minus
Query: 869 cgccgcgccgcgctcgaacagcgccgtgctcagccccaccgtcgccatcccgtacccgtg 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cgccgcgccgcgctcgaacagcgccgtgctcagccccaccgtcgccatcccgtacccgtg 294
Query: 929 cttccccagatccccgaacccgcacgccccaccgatggcgtcttcggggtcggcggcgta 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cttccccagatccccgaacccgcacgccccaccgatggcgtcttcggggtcggcggcgta 234
Query: 989 gtaggatgccatgaacggggcgccactcggaaagcgcggaggagccgtaggaggacgggt 1048
|||||||||| || |||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 233 gtaggatgccttg-gcggggcgccactcggagagcgcggaggagccataggaggacgggt 175
Query: 1049 gctggtgtccggcggc 1064
||||||||||||||||
Sbjct: 174 gctggtgtccggcggc 159
Score = 99.6 bits (50), Expect = 6e-019
Identities = 53/54 (98%)
Strand = Plus / Minus
Query: 1091 agagcaggagccgcggagccatggctcccgactgctcgctgccggtgccggtat 1144
||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 agagcaggagcggcggagccatggctcccgactgctcgctgccggtgccggtat 82
>gb|CL181627.1|CL181627 104_392_10896876_148_31925_252 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896876, DNA
sequence
Length = 621
Score = 252 bits (127), Expect = 6e-065
Identities = 130/131 (99%)
Strand = Plus / Plus
Query: 831 agatcctcgacgcacttgacctcgtagcagccgccgcacgccgcgccgcgctcgaacagc 890
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 agatcctcgacgcacttgacctcgtagcagccgctgcacgccgcgccgcgctcgaacagc 60
Query: 891 gccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccgaacccg 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccgaacccg 120
Query: 951 cacgccccacc 961
|||||||||||
Sbjct: 121 cacgccccacc 131
Score = 147 bits (74), Expect = 3e-033
Identities = 99/106 (93%), Gaps = 1/106 (0%)
Strand = Plus / Plus
Query: 959 accgatggcgtcttcggggtcggcggcgtagtaggatgccatgaacggggcgccactcgg 1018
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 407 accgatggcgtcttcggggtcggcggcgtagtaggatgccttgg-cggggcgccactcgg 465
Query: 1019 aaagcgcggaggagccgtaggaggacgggtgctggtgtccggcggc 1064
| |||||||| || || |||||||||||||||||||||||||||||
Sbjct: 466 agagcgcggacgaaccataggaggacgggtgctggtgtccggcggc 511
Score = 99.6 bits (50), Expect = 6e-019
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 1091 agagcaggagccgcggagccatggctcccgactgctcgctgccggtgccggtat 1144
||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 agagcaggagcggcggagccatggctcccgactgctcgctgccggtgccggtat 588
>gb|CF073210.1|CF073210 FE1_28_E04.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_28_E04_A002 5', mRNA sequence
Length = 247
Score = 182 bits (92), Expect = 5e-044
Identities = 128/140 (91%)
Strand = Plus / Plus
Query: 109 cttctattttgaatgatacatcaagcctctttagtacaactatgaaggggacatggaaaa 168
|||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| ||||
Sbjct: 86 cttctattttcaatgatacatcaagcctctttagagcaactatgaagggtacatgaaaaa 145
Query: 169 ccatttatgaccaagagcaactatctgaggccttgcactaagtaattttctcctaataat 228
||||||||| | |||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 146 gcatttatgagccagagtaactatcttaggccctgcactaagtaattttctcctaataat 205
Query: 229 gatattacttgttctgcaga 248
|||||| |||||||||||||
Sbjct: 206 gatattgcttgttctgcaga 225
Score = 60.0 bits (30), Expect = 5e-007
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 70 tcattgcttgctaggtaaaatattgtaatacaacggag 107
||||| ||||| ||||||||||||||||||||||||||
Sbjct: 33 tcattacttgccaggtaaaatattgtaatacaacggag 70
>gb|CW201863.1|CW201863 104_627_11184792_148_37107_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184792, DNA
sequence
Length = 677
Score = 153 bits (77), Expect = 4e-035
Identities = 86/89 (96%)
Strand = Plus / Minus
Query: 557 gccaccaacgttgctgattaggactgtaaagaagaagtgccgaccgttgacagagaacct 616
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 677 gccaccaacattgctgattaggactgtaaagaagaagtgccgaccattgacagagaacct 618
Query: 617 gacaccaccttcacggaggcacttaacac 645
|||||||||||| ||||||||||||||||
Sbjct: 617 gacaccaccttctcggaggcacttaacac 589
>gb|CW406940.1|CW406940 fsbb001f100d03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f100d03, DNA
sequence
Length = 665
Score = 153 bits (77), Expect = 4e-035
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 885 aacagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccg 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 aacagcgccgtgctcagccccaccgtcgccatcccgtacccgtgcttccccagatccccg 606
Query: 945 aacccgcacgccccacc 961
|||||||||||||||||
Sbjct: 605 aacccgcacgccccacc 589
Score = 147 bits (74), Expect = 3e-033
Identities = 99/106 (93%), Gaps = 1/106 (0%)
Strand = Plus / Minus
Query: 959 accgatggcgtcttcggggtcggcggcgtagtaggatgccatgaacggggcgccactcgg 1018
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 313 accgatggcgtcttcggggtcggcggcgtagtaggatgccttgg-cggggcgccactcgg 255
Query: 1019 aaagcgcggaggagccgtaggaggacgggtgctggtgtccggcggc 1064
| |||||||| || || |||||||||||||||||||||||||||||
Sbjct: 254 agagcgcggacgaaccataggaggacgggtgctggtgtccggcggc 209
Score = 99.6 bits (50), Expect = 6e-019
Identities = 53/54 (98%)
Strand = Plus / Minus
Query: 1091 agagcaggagccgcggagccatggctcccgactgctcgctgccggtgccggtat 1144
||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 agagcaggagcggcggagccatggctcccgactgctcgctgccggtgccggtat 132
>gb|CL181626.1|CL181626 104_392_10896876_116_31926_252 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896876, DNA
sequence
Length = 409
Score = 147 bits (74), Expect = 3e-033
Identities = 99/106 (93%), Gaps = 1/106 (0%)
Strand = Plus / Minus
Query: 959 accgatggcgtcttcggggtcggcggcgtagtaggatgccatgaacggggcgccactcgg 1018
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 372 accgatggcgtcttcggggtcggcggcgtagtaggatgccttgg-cggggcgccactcgg 314
Query: 1019 aaagcgcggaggagccgtaggaggacgggtgctggtgtccggcggc 1064
| |||||||| || || |||||||||||||||||||||||||||||
Sbjct: 313 agagcgcggacgaaccataggaggacgggtgctggtgtccggcggc 268
Score = 99.6 bits (50), Expect = 6e-019
Identities = 53/54 (98%)
Strand = Plus / Minus
Query: 1091 agagcaggagccgcggagccatggctcccgactgctcgctgccggtgccggtat 1144
||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 agagcaggagcggcggagccatggctcccgactgctcgctgccggtgccggtat 191
>gb|CW043252.1|CW043252 104_278_10507811_114_30254 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10507811, DNA
sequence
Length = 418
Score = 147 bits (74), Expect = 3e-033
Identities = 99/106 (93%), Gaps = 1/106 (0%)
Strand = Plus / Minus
Query: 959 accgatggcgtcttcggggtcggcggcgtagtaggatgccatgaacggggcgccactcgg 1018
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 151 accgatggcgtcttcggggtcggcggcgtagtaggatgccttgg-cggggcgccactcgg 93
Query: 1019 aaagcgcggaggagccgtaggaggacgggtgctggtgtccggcggc 1064
| |||||||| || || |||||||||||||||||||||||||||||
Sbjct: 92 agagcgcggacgaaccataggaggacgggtgctggtgtccggcggc 47
>gb|CW149259.1|CW149259 104_548_11142395_116_36285_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11142395, DNA
sequence
Length = 699
Score = 67.9 bits (34), Expect = 2e-009
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 608 agagaacctgacaccaccttcacggaggcacttaacac 645
||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 agagaacctgacaccaccttctcggaggcacttaacac 38
>gb|CW029128.1|CW029128 104_256_10499499_114_30399 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499499, DNA
sequence
Length = 624
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 386 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagttg 445
Query: 789 gtggccgt 796
||||||||
Sbjct: 446 gtggccgt 453
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 851 ctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
|||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 505 ctcgtagcaggacccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 556
>gb|CW038342.1|CW038342 104_270_10504868_115_30386 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10504868, DNA
sequence
Length = 550
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 324 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagttg 265
Query: 789 gtggccgt 796
||||||||
Sbjct: 264 gtggccgt 257
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 851 ctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
|||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 205 ctcgtagcaggacccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 154
>gb|CW088882.1|CW088882 104_434_10948378_115_32585_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948378, DNA
sequence
Length = 710
Score = 56.0 bits (28), Expect = 8e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 851 ctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagccccaccgt 910
|||||||||||||||||| || |||||| |||||||||||| |||||||||| ||||
Sbjct: 563 ctcgtagcagccgccgcaggcgctgccgcggccgaacagcgccgcgctcagccccgccgt 504
>gb|CW096538.1|CW096538 104_462_11001950_116_34349_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001950, DNA
sequence
Length = 674
Score = 56.0 bits (28), Expect = 8e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 851 ctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagccccaccgt 910
|||||||||||||||||| || |||||| |||||||||||| |||||||||| ||||
Sbjct: 138 ctcgtagcagccgccgcaggcgctgccgcggccgaacagcgccgcgctcagccccgccgt 197
>gb|CW179534.1|CW179534 104_593_11160150_148_36628_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11160150, DNA
sequence
Length = 669
Score = 56.0 bits (28), Expect = 8e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 851 ctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagccccaccgt 910
|||||||||||||||||| || |||||| |||||||||||| |||||||||| ||||
Sbjct: 167 ctcgtagcagccgccgcaggcgctgccgcggccgaacagcgccgcgctcagccccgccgt 108
>gb|CW318660.1|CW318660 104_811_11474070_116_35879_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474070, DNA
sequence
Length = 634
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 269 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggagggcagaagttg 210
Query: 789 gtggccgt 796
||||||||
Sbjct: 209 gtggccgt 202
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 851 ctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
|||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 150 ctcgtagcaggacccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 99
>gb|CW355038.1|CW355038 fsbb001f019i03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f019i03, DNA
sequence
Length = 641
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 311 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagttg 370
Query: 789 gtggccgt 796
||||||||
Sbjct: 371 gtggccgt 378
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 851 ctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
|||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 430 ctcgtagcaggacccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 481
>gb|CW371631.1|CW371631 fsbb001f047d01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f047d01, DNA
sequence
Length = 642
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 115 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagttg 174
Query: 789 gtggccgt 796
||||||||
Sbjct: 175 gtggccgt 182
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 851 ctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
|||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 234 ctcgtagcaggacccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 285
>gb|CW421780.1|CW421780 fsbb001f130l24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f130l24, DNA
sequence
Length = 743
Score = 56.0 bits (28), Expect = 8e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 851 ctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagccccaccgt 910
|||||||||||||||||| || |||||| |||||||||||| |||||||||| ||||
Sbjct: 309 ctcgtagcagccgccgcaggcgctgccgcggccgaacagcgccgcgctcagccccgccgt 368
>gb|AW564506.1|AW564506 LG1_295_D10.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 447
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 221 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggagggcagaagttg 162
Query: 789 gtggccgt 796
||||||||
Sbjct: 161 gtggccgt 154
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 851 ctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
|||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 102 ctcgtagcaggacccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 51
>gb|BE361754.1|BE361754 DG1_82_G01.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 541
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 443 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagttg 384
Query: 789 gtggccgt 796
||||||||
Sbjct: 383 gtggccgt 376
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 851 ctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
|||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 324 ctcgtagcaggacccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 273
>gb|BE917749.1|BE917749 OV1_6_F07.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 581
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 482 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggagggcagaagttg 423
Query: 789 gtggccgt 796
||||||||
Sbjct: 422 gtggccgt 415
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 851 ctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
|||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 363 ctcgtagcaggacccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 312
>gb|BG052144.1|BG052144 RHIZ2_6_F11.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 539
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 436 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagttg 377
Query: 789 gtggccgt 796
||||||||
Sbjct: 376 gtggccgt 369
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 851 ctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
|||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 317 ctcgtagcaggacccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 266
>gb|BG355452.1|BG355452 EM1_16_F05.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 542
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 439 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagttg 380
Query: 789 gtggccgt 796
||||||||
Sbjct: 379 gtggccgt 372
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 851 ctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
|||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 320 ctcgtagcaggacccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 269
>gb|BG463957.1|BG463957 EM1_52_H10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 508
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 473 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggagggcagaagttg 414
Query: 789 gtggccgt 796
||||||||
Sbjct: 413 gtggccgt 406
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 851 ctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
|||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 354 ctcgtagcaggacccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 303
>gb|BI075831.1|BI075831 IP1_21_G05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 646
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 481 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggagggcagaagttg 422
Query: 789 gtggccgt 796
||||||||
Sbjct: 421 gtggccgt 414
>gb|CD204043.1|CD204043 HS1_3_A10.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_3_A10_A012 5', mRNA sequence
Length = 632
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 458 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagttg 399
Query: 789 gtggccgt 796
||||||||
Sbjct: 398 gtggccgt 391
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 851 ctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
|||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 339 ctcgtagcaggacccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 288
>gb|CD230048.1|CD230048 SS1_40_H09.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_40_H09_A012 5', mRNA sequence
Length = 548
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 450 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagttg 391
Query: 789 gtggccgt 796
||||||||
Sbjct: 390 gtggccgt 383
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 851 ctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
|||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 331 ctcgtagcaggacccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 280
>gb|CD231880.1|CD231880 SS1_30_D11.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_30_D11_A012 5', mRNA sequence
Length = 691
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 453 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagttg 394
Query: 789 gtggccgt 796
||||||||
Sbjct: 393 gtggccgt 386
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 851 ctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
|||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 334 ctcgtagcaggacccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 283
>gb|CD432827.1|CD432827 ETH1_33_A06.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_33_A06_A002 5', mRNA sequence
Length = 520
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 457 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagttg 398
Query: 789 gtggccgt 796
||||||||
Sbjct: 397 gtggccgt 390
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 851 ctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
|||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 338 ctcgtagcaggacccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 287
>gb|CN134486.1|CN134486 OX1_26_D09.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_D09_A002 5', mRNA sequence
Length = 779
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 757 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagttg 698
Query: 789 gtggccgt 796
||||||||
Sbjct: 697 gtggccgt 690
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 851 ctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
|||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 638 ctcgtagcaggacccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 587
>gb|CN136158.1|CN136158 OX1_41_D05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_41_D05_A002 3', mRNA sequence
Length = 725
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 114 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagttg 55
Query: 789 gtggccgt 796
||||||||
Sbjct: 54 gtggccgt 47
>gb|CN136232.1|CN136232 OX1_41_D05.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_41_D05_A002 5', mRNA sequence
Length = 840
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 449 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagttg 390
Query: 789 gtggccgt 796
||||||||
Sbjct: 389 gtggccgt 382
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 851 ctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
|||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 330 ctcgtagcaggacccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 279
>gb|CN151326.1|CN151326 WOUND1_74_G01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_74_G01_A002 5', mRNA sequence
Length = 813
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 472 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggagggcagaagttg 413
Query: 789 gtggccgt 796
||||||||
Sbjct: 412 gtggccgt 405
Score = 48.1 bits (24), Expect = 0.002
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 851 ctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
|||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct: 353 ctcgtagcaggacccgcacgccgcgccgtcgttgaacagcgccgtgctcagc 302
>gb|CX611078.1|CX611078 ANR1_22_B08.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_22_B08_A002 5', mRNA sequence
Length = 605
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 321 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagttg 262
Query: 789 gtggccgt 796
||||||||
Sbjct: 261 gtggccgt 254
>gb|CX620549.1|CX620549 GABR1_52_C02.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_52_C02_A002 5', mRNA sequence
Length = 545
Score = 56.0 bits (28), Expect = 8e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 729 ggcgggttgcagtggccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttg 788
||||||||||| ||||||| ||||| ||| ||||||||||| || | ||||||||||
Sbjct: 438 ggcgggttgcaccagccgccgtcgtcgctggggaggccgtagttgggcgggcagaagttg 379
Query: 789 gtggccgt 796
||||||||
Sbjct: 378 gtggccgt 371
Score = 56.0 bits (28), Expect = 8e-006
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 851 ctcgtagcagccgccgcacgccgcgccgcgctcgaacagcgccgtgctcagc 902
|||||||||| |||||||||||||||| | |||||||||||||||||||
Sbjct: 319 ctcgtagcaggacccgcacgccgcgccgccgttgaacagcgccgtgctcagc 268
>gb|CW179633.1|CW179633 104_593_11160203_116_36623_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11160203, DNA
sequence
Length = 689
Score = 54.0 bits (27), Expect = 3e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 744 ccgccggcgtcggcgggaaggccgtagttcggggcgcagaagttggtggccgtga 798
||||||||||| | ||| || |||||||| || | ||||||||||||||||||||
Sbjct: 663 ccgccggcgtccgagggcagcccgtagttgggcgggcagaagttggtggccgtga 609
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 315,629
Number of Sequences: 832831
Number of extensions: 315629
Number of successful extensions: 90077
Number of sequences better than 0.5: 90
Number of HSP's better than 0.5 without gapping: 89
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 89875
Number of HSP's gapped (non-prelim): 183
length of query: 1171
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1151
effective length of database: 474,703,049
effective search space: 546383209399
effective search space used: 546383209399
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)