BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437629.2.2
(1041 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW438004.1|CW438004 fsbb001f155g11f0 Sorghum methylation... 357 1e-096
gb|BG159361.1|BG159361 OV2_6_G12.g1_A002 Ovary 2 (OV2) Sorg... 280 2e-073
gb|CW161271.1|CW161271 104_568_11150325_148_36430_093 Sorgh... 238 8e-061
gb|CN139974.1|CN139974 OX1_33_F07.b1_A002 Oxidatively-stres... 236 3e-060
gb|CW070747.1|CW070747 104_322_10590981_116_30543 Sorghum m... 226 3e-057
gb|BM328755.1|BM328755 PIC1_26_B07.g1_A002 Pathogen-infecte... 204 1e-050
gb|BG159352.1|BG159352 OV2_6_F12.g1_A002 Ovary 2 (OV2) Sorg... 182 4e-044
gb|BG465944.1|BG465944 RHIZ2_46_E09.g1_A003 Rhizome2 (RHIZ2... 182 4e-044
gb|CD228545.1|CD228545 CCC1_8_A06.b1_A007 Callus culture/ce... 182 4e-044
gb|CD228570.1|CD228570 CCC1_8_A06.g1_A007 Callus culture/ce... 151 2e-034
gb|BM324254.1|BM324254 PIC1_26_B07.b1_A002 Pathogen-infecte... 101 1e-019
gb|CW070746.1|CW070746 104_322_10590981_114_30544 Sorghum m... 82 1e-013
gb|CW410942.1|CW410942 fsbb001f105o10k0 Sorghum methylation... 68 2e-009
gb|CW444206.1|CW444206 fsbb001f164l01k0 Sorghum methylation... 68 2e-009
gb|AW283881.1|AW283881 LG1_282_A07.g1_A002 Light Grown 1 (L... 66 7e-009
gb|BG101804.1|BG101804 RHIZ2_22_F05.g1_A003 Rhizome2 (RHIZ2... 66 7e-009
gb|CD227672.1|CD227672 CCC1_53_D08.b1_A007 Callus culture/c... 42 0.10
gb|CX608003.1|CX608003 ANR1_32_C02.b1_A002 Anaerobic roots ... 42 0.10
gb|CX612583.1|CX612583 GABR1_3_F09.b1_A002 GA- or brassinol... 42 0.10
gb|CL161950.1|CL161950 104_353_10806077_114_31828_365 Sorgh... 40 0.40
gb|CL161951.1|CL161951 104_353_10806077_116_31829_365 Sorgh... 40 0.40
gb|CW110231.1|CW110231 104_482_11103576_148_34514_082 Sorgh... 40 0.40
gb|CW370097.1|CW370097 fsbb001f044n13f0 Sorghum methylation... 40 0.40
gb|CF488456.1|CF488456 POL1_50_C12.b1_A002 Pollen Sorghum b... 40 0.40
gb|CN145002.1|CN145002 WOUND1_26_E07.b2_A002 Wounded leaves... 40 0.40
>gb|CW438004.1|CW438004 fsbb001f155g11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f155g11, DNA
sequence
Length = 766
Score = 357 bits (180), Expect = 1e-096
Identities = 289/322 (89%), Gaps = 10/322 (3%)
Strand = Plus / Plus
Query: 293 atctagtcaattttgcattacaaaaaactcacgaatccattgaatcattattgcttgcta 352
|||||||||||||||||||||||| | | |||||||||||| ||||||||||||
Sbjct: 13 atctagtcaattttgcattacaaata-----caaatccattgaat---tattgcttgcta 64
Query: 353 gaattgataaatcaatatattattcattcttttggtttctgcagaaataattgtttcagg 412
| ||||| | || | |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 65 ggattgagatgccattgtattattcattcttttggttcctgcagaaataattgtttcagg 124
Query: 413 agggatgaccatgcctcaggtgattgcatcactggagcccatgccacggaaaagccagaa 472
||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 125 aggaatgaccatgcctcaggtgattgcatcactggagcctatgccgcggaaaagccagag 184
Query: 473 cattcgtctaaatagaatgacgtgatgtaaaac-aagccacatgcatcaaggtcaaagtt 531
|||||||||||||||||||||||||||||| || ||| |||||||| |||||| ||||||
Sbjct: 185 cattcgtctaaatagaatgacgtgatgtaacacaaagtcacatgcaacaaggtaaaagtt 244
Query: 532 tccaacttatataacc-cagctggtttgttttgcatgtttactgatattgggttgtgcat 590
|||||| |||| |||| |||||||| ||||| |||||||||||||||||||| |||||||
Sbjct: 245 tccaacctatacaacctcagctggtgtgtttggcatgtttactgatattgggctgtgcat 304
Query: 591 caagcagatagcatgacctgtg 612
||||||||||||||||||||||
Sbjct: 305 caagcagatagcatgacctgtg 326
Score = 93.7 bits (47), Expect = 3e-017
Identities = 84/95 (88%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 620 ccatgtgatttggatagaggagcagctttgtgctgagctattgtggcattctgtagtgca 679
|||||||||||||||||||||||| || ||||| |||| || ||||||||| ||||||
Sbjct: 360 ccatgtgatttggatagaggagcaactctgtgccgagccatcgtggcattc-caagtgca 418
Query: 680 ggggaagcatcgtgttgatgcccagggatattatt 714
||||||||||||||||||||| | |||||| ||||
Sbjct: 419 ggggaagcatcgtgttgatgctctgggatactatt 453
Score = 81.8 bits (41), Expect = 1e-013
Identities = 86/100 (86%), Gaps = 2/100 (2%)
Strand = Plus / Plus
Query: 918 gtccaaaatgctaacgtctatgcttgaggtgcattattgattaaattcgtttataactgt 977
|||||||||| ||||||| | || ||||||| | | |||||||||||||||| ||||||
Sbjct: 498 gtccaaaatgttaacgtcaacgcgtgaggtgtgtgagtgattaaattcgtttacaactgt 557
Query: 978 ga--tgtataacatcttacgttacaaagagagcacacaac 1015
| ||||||||||||||||||| |||| |||||||||||
Sbjct: 558 gcgctgtataacatcttacgttataaagggagcacacaac 597
>gb|BG159361.1|BG159361 OV2_6_G12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 486
Score = 280 bits (141), Expect = 2e-073
Identities = 178/194 (91%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 101
Query: 64 gtccttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcat 123
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 102 gtccttcagactgacaaaggcgatgaagaactgtgtagtgtgtatgtgccaacaaatcat 161
Query: 124 ctgtacatcggtgatatatttctggtgaactcnnnnnnnnnnntaagacctaatttatct 183
|| ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 162 ctatacatcggtgacatatttctggtgaactctgaggagattataagacctaatttatcc 221
Query: 184 attcgagaaggaat 197
||||| ||||||||
Sbjct: 222 attcgggaaggaat 235
Score = 182 bits (92), Expect = 4e-044
Identities = 107/112 (95%)
Strand = Plus / Plus
Query: 396 gaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagcccatg 455
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 237 gaaataattgtttcaggaggaatgaccatgcctcaggtgattgcatcactggagcctatg 296
Query: 456 ccacggaaaagccagaacattcgtctaaatagaatgacgtgatgtaaaacaa 507
|| ||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 297 ccgcggaaaagccagagcattcgtctaaatagaatgacgtgatgtaacacaa 348
Score = 77.8 bits (39), Expect = 2e-012
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 620 ccatgtgatttggatagaggagcagctttgtgctgagctattgtggcattctgtagtgca 679
|||||||||||||||||||||||| || ||||| |||| || ||||||||| ||||||
Sbjct: 413 ccatgtgatttggatagaggagcaactctgtgccgagccatcgtggcattc-caagtgca 471
Query: 680 ggggaagcatcgtgt 694
|||||||||||||||
Sbjct: 472 ggggaagcatcgtgt 486
>gb|CW161271.1|CW161271 104_568_11150325_148_36430_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11150325, DNA
sequence
Length = 746
Score = 238 bits (120), Expect = 8e-061
Identities = 170/184 (92%), Gaps = 2/184 (1%)
Strand = Plus / Plus
Query: 431 ggtgattgcatcactggagcccatgccacggaaaagccagaacattcgtctaaatagaat 490
||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||
Sbjct: 1 ggtgattgcatcactggagcctatgccgcggaaaagccagagcattcgtctaaatagaat 60
Query: 491 gacgtgatgtaaaac-aagccacatgcatcaaggtcaaagtttccaacttatataacc-c 548
|||||||||||| || ||| |||||||| |||||| |||||||||||| |||| |||| |
Sbjct: 61 gacgtgatgtaacacaaagtcacatgcaacaaggtaaaagtttccaacctatacaacctc 120
Query: 549 agctggtttgttttgcatgtttactgatattgggttgtgcatcaagcagatagcatgacc 608
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 121 agctggtgtgtttggcatgtttactgatattgggctgtgcatcaagcagatagcatgacc 180
Query: 609 tgtg 612
||||
Sbjct: 181 tgtg 184
Score = 93.7 bits (47), Expect = 3e-017
Identities = 84/95 (88%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 620 ccatgtgatttggatagaggagcagctttgtgctgagctattgtggcattctgtagtgca 679
|||||||||||||||||||||||| || ||||| |||| || ||||||||| ||||||
Sbjct: 218 ccatgtgatttggatagaggagcaactctgtgccgagccatcgtggcattc-caagtgca 276
Query: 680 ggggaagcatcgtgttgatgcccagggatattatt 714
||||||||||||||||||||| | |||||| ||||
Sbjct: 277 ggggaagcatcgtgttgatgctctgggatactatt 311
Score = 81.8 bits (41), Expect = 1e-013
Identities = 86/100 (86%), Gaps = 2/100 (2%)
Strand = Plus / Plus
Query: 918 gtccaaaatgctaacgtctatgcttgaggtgcattattgattaaattcgtttataactgt 977
|||||||||| ||||||| | || ||||||| | | |||||||||||||||| ||||||
Sbjct: 356 gtccaaaatgttaacgtcaacgcgtgaggtgtgtgagtgattaaattcgtttacaactgt 415
Query: 978 ga--tgtataacatcttacgttacaaagagagcacacaac 1015
| ||||||||||||||||||| |||| |||||||||||
Sbjct: 416 gcgctgtataacatcttacgttataaagggagcacacaac 455
>gb|CN139974.1|CN139974 OX1_33_F07.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_33_F07_A002 3', mRNA sequence
Length = 608
Score = 236 bits (119), Expect = 3e-060
Identities = 143/151 (94%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||
Sbjct: 116 gcaataattcgtcatccccgaattggcgaatacgcattgggattcataacatcaacggtg 175
Query: 64 gtccttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcat 123
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 176 gtccttcagactgacaaaggcgatgaagaactgtgtagtgtgtatgtcccaacaaatcat 235
Query: 124 ctgtacatcggtgatatatttctggtgaact 154
|| ||||||||||| ||||||||||||||||
Sbjct: 236 ctatacatcggtgacatatttctggtgaact 266
Score = 174 bits (88), Expect = 1e-041
Identities = 106/112 (94%)
Strand = Plus / Plus
Query: 396 gaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagcccatg 455
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 311 gaaataattgtttcaggaggaatgaccatgcctcaggtgattgcatcactggagcctatg 370
Query: 456 ccacggaaaagccagaacattcgtctaaatagaatgacgtgatgtaaaacaa 507
|| ||||||||||||| ||||||||||||||||||| |||||||||| ||||
Sbjct: 371 ccgcggaaaagccagagcattcgtctaaatagaatgtcgtgatgtaacacaa 422
Score = 56.0 bits (28), Expect = 7e-006
Identities = 81/96 (84%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 620 ccatgtgatttggatagaggagcagctttgtgct-gagctattgtggcattctgtagtgc 678
|||||||||| ||||||||||||| || ||||| |||| || ||||| ||| |||||
Sbjct: 487 ccatgtgattgggatagaggagcaactctgtgcgcgagccatcgtggctttcca-agtgc 545
Query: 679 aggggaagcatcgtgttgatgcccagggatattatt 714
||||||||| |||||||||||| | |||||| ||||
Sbjct: 546 aggggaagcctcgtgttgatgctctgggataatatt 581
>gb|CW070747.1|CW070747 104_322_10590981_116_30543 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10590981, DNA
sequence
Length = 656
Score = 226 bits (114), Expect = 3e-057
Identities = 178/202 (88%), Gaps = 2/202 (0%)
Strand = Plus / Plus
Query: 70 cagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcatctgtac 129
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 396 cagactgacaaaggcgatgaagaactgtgtagtgtgtatgtgccaacaaatcatctatac 455
Query: 130 atcggtgatatatttctggtgaactcnnnnnnnnnnntaagacctaatttatctattcga 189
|||||||| ||||||||||||||||| |||||||||||||||| |||||
Sbjct: 456 atcggtgacatatttctggtgaactctgaggagattataagacctaatttatccattcgg 515
Query: 190 gaaggaatcggtatggtagtttggttaatatgatgcctagc--atctctatattattatg 247
|||||||| ||||||||||||| ||| ||||||||||||| ||| ||||||||||||
Sbjct: 516 gaaggaattggtatggtagttttgttcctatgatgcctagcctttctatatattattatg 575
Query: 248 ccatgtggcaactttccttgaa 269
||||||||||||||||||||||
Sbjct: 576 ccatgtggcaactttccttgaa 597
Score = 137 bits (69), Expect = 2e-030
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 146
Query: 64 gtccttcag 72
|||||||||
Sbjct: 147 gtccttcag 155
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 293 atctagtcaattttgcattacaaa 316
||||||||||||||||||||||||
Sbjct: 606 atctagtcaattttgcattacaaa 629
>gb|BM328755.1|BM328755 PIC1_26_B07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 574
Score = 204 bits (103), Expect = 1e-050
Identities = 140/156 (89%)
Strand = Plus / Plus
Query: 42 tggattcataacatcaacggtggtccttcagactgacaaaggcgacgaagaactgtgtag 101
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tggattcataacatcaacggtggtccttcagactgacaaaggcgatgaagaactgtgtag 60
Query: 102 tgtgtatgtgccaacaaatcatctgtacatcggtgatatatttctggtgaactcnnnnnn 161
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 61 tgtgtatgtgccaacaaatcatctatacatcggtgacatatttctggtgaactctgagga 120
Query: 162 nnnnntaagacctaatttatctattcgagaaggaat 197
|||||||||||||||| ||||| ||||||||
Sbjct: 121 gattataagacctaatttatccattcgggaaggaat 156
Score = 182 bits (92), Expect = 4e-044
Identities = 107/112 (95%)
Strand = Plus / Plus
Query: 396 gaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagcccatg 455
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 158 gaaataattgtttcaggaggaatgaccatgcctcaggtgattgcatcactggagcctatg 217
Query: 456 ccacggaaaagccagaacattcgtctaaatagaatgacgtgatgtaaaacaa 507
|| ||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 218 ccgcggaaaagccagagcattcgtctaaatagaatgacgtgatgtaacacaa 269
Score = 93.7 bits (47), Expect = 3e-017
Identities = 84/95 (88%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 620 ccatgtgatttggatagaggagcagctttgtgctgagctattgtggcattctgtagtgca 679
|||||||||||||||||||||||| || ||||| |||| || ||||||||| ||||||
Sbjct: 334 ccatgtgatttggatagaggagcaactctgtgccgagccatcgtggcattc-caagtgca 392
Query: 680 ggggaagcatcgtgttgatgcccagggatattatt 714
||||||||||||||||||||| | |||||| ||||
Sbjct: 393 ggggaagcatcgtgttgatgctctgggatactatt 427
Score = 81.8 bits (41), Expect = 1e-013
Identities = 86/100 (86%), Gaps = 2/100 (2%)
Strand = Plus / Plus
Query: 918 gtccaaaatgctaacgtctatgcttgaggtgcattattgattaaattcgtttataactgt 977
|||||||||| ||||||| | || ||||||| | | |||||||||||||||| ||||||
Sbjct: 472 gtccaaaatgttaacgtcaacgcgtgaggtgtgtgagtgattaaattcgtttacaactgt 531
Query: 978 ga--tgtataacatcttacgttacaaagagagcacacaac 1015
| ||||||||||||||||||| |||| |||||||||||
Sbjct: 532 gcgctgtataacatcttacgttataaagggagcacacaac 571
>gb|BG159352.1|BG159352 OV2_6_F12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 244
Score = 182 bits (92), Expect = 4e-044
Identities = 107/112 (95%)
Strand = Plus / Plus
Query: 396 gaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagcccatg 455
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 8 gaaataattgtttcaggaggaatgaccatgcctcaggtgattgcatcactggagcctatg 67
Query: 456 ccacggaaaagccagaacattcgtctaaatagaatgacgtgatgtaaaacaa 507
|| ||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 68 ccgcggaaaagccagagcattcgtctaaatagaatgacgtgatgtaacacaa 119
Score = 61.9 bits (31), Expect = 1e-007
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 620 ccatgtgatttggatagaggagcagctttgtgctgagctattgtggcattc 670
|||||||||||||||||||||||| || ||||| |||| || |||||||||
Sbjct: 184 ccatgtgatttggatagaggagcaactctgtgccgagccatcgtggcattc 234
>gb|BG465944.1|BG465944 RHIZ2_46_E09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 602
Score = 182 bits (92), Expect = 4e-044
Identities = 107/112 (95%)
Strand = Plus / Plus
Query: 396 gaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagcccatg 455
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 137 gaaataattgtttcaggaggaatgaccatgcctcaggtgattgcatcactggagcctatg 196
Query: 456 ccacggaaaagccagaacattcgtctaaatagaatgacgtgatgtaaaacaa 507
|| ||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 197 ccgcggaaaagccagagcattcgtctaaatagaatgacgtgatgtaacacaa 248
Score = 163 bits (82), Expect = 4e-038
Identities = 119/135 (88%)
Strand = Plus / Plus
Query: 63 ggtccttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatca 122
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtccttcagactgacaaaggcgatgaagaactgtgtagtgtgtatgtgccaacaaatca 60
Query: 123 tctgtacatcggtgatatatttctggtgaactcnnnnnnnnnnntaagacctaatttatc 182
||| ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 61 tctatacatcggtgacatatttctggtgaactctgaggagatcataagacctaatttatc 120
Query: 183 tattcgagaaggaat 197
||||| ||||||||
Sbjct: 121 cattcgggaaggaat 135
Score = 81.8 bits (41), Expect = 1e-013
Identities = 86/100 (86%), Gaps = 2/100 (2%)
Strand = Plus / Plus
Query: 918 gtccaaaatgctaacgtctatgcttgaggtgcattattgattaaattcgtttataactgt 977
|||||||||| ||||||| | || ||||||| | | |||||||||||||||| ||||||
Sbjct: 452 gtccaaaatgttaacgtcaacgcgtgaggtgtgtgagtgattaaattcgtttacaactgt 511
Query: 978 ga--tgtataacatcttacgttacaaagagagcacacaac 1015
| ||||||||||||||||||| |||| |||||||||||
Sbjct: 512 gcgctgtataacatcttacgttataaagggagcacacaac 551
Score = 71.9 bits (36), Expect = 1e-010
Identities = 83/96 (86%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 620 ccatgtgatttggatagaggagcagctttgtgctgagctattgtggcattctgtagtgca 679
|||||||||||||||||||||||| || ||||| | || || ||||||||| ||||||
Sbjct: 313 ccatgtgatttggatagaggagcaactctgtgccgtgccatcgtggcattc-caagtgca 371
Query: 680 -ggggaagcatcgtgttgatgcccagggatattatt 714
||||||||||||||||||||| | |||||| ||||
Sbjct: 372 gggggaagcatcgtgttgatgctctgggatactatt 407
>gb|CD228545.1|CD228545 CCC1_8_A06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_8_A06_A007 3', mRNA sequence
Length = 652
Score = 182 bits (92), Expect = 4e-044
Identities = 107/112 (95%)
Strand = Plus / Plus
Query: 396 gaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagcccatg 455
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 135 gaaataattgtttcaggaggaatgaccatgcctcaggtgattgcatcactggagcctatg 194
Query: 456 ccacggaaaagccagaacattcgtctaaatagaatgacgtgatgtaaaacaa 507
|| ||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 195 ccgcggaaaagccagagcattcgtctaaatagaatgacgtgatgtaacacaa 246
Score = 151 bits (76), Expect = 2e-034
Identities = 116/133 (87%)
Strand = Plus / Plus
Query: 65 tccttcagactgacaaaggcgacgaagaactgtgtagtgtgtatgtgccaacaaatcatc 124
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccttcagactgacaaaggcgatgaagaactgtgtagtgtgtatgtgccaacaaatcatc 60
Query: 125 tgtacatcggtgatatatttctggtgaactcnnnnnnnnnnntaagacctaatttatcta 184
| ||||||||||| |||||||||||| |||| |||||||||||||||| |
Sbjct: 61 tatacatcggtgacatatttctggtggactctgaggagattataagacctaatttatcca 120
Query: 185 ttcgagaaggaat 197
|||| ||||||||
Sbjct: 121 ttcgggaaggaat 133
Score = 93.7 bits (47), Expect = 3e-017
Identities = 84/95 (88%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 620 ccatgtgatttggatagaggagcagctttgtgctgagctattgtggcattctgtagtgca 679
|||||||||||||||||||||||| || ||||| |||| || ||||||||| ||||||
Sbjct: 311 ccatgtgatttggatagaggagcaactctgtgccgagccatcgtggcattc-caagtgca 369
Query: 680 ggggaagcatcgtgttgatgcccagggatattatt 714
||||||||||||||||||||| | |||||| ||||
Sbjct: 370 ggggaagcatcgtgttgatgctctgggatactatt 404
Score = 81.8 bits (41), Expect = 1e-013
Identities = 86/100 (86%), Gaps = 2/100 (2%)
Strand = Plus / Plus
Query: 918 gtccaaaatgctaacgtctatgcttgaggtgcattattgattaaattcgtttataactgt 977
|||||||||| ||||||| | || ||||||| | | |||||||||||||||| ||||||
Sbjct: 449 gtccaaaatgttaacgtcaacgcgtgaggtgtgtgagtgattaaattcgtttacaactgt 508
Query: 978 ga--tgtataacatcttacgttacaaagagagcacacaac 1015
| ||||||||||||||||||| |||| |||||||||||
Sbjct: 509 gcgctgtataacatcttacgttataaagggagcacacaac 548
>gb|CD228570.1|CD228570 CCC1_8_A06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_8_A06_A007 5', mRNA sequence
Length = 640
Score = 151 bits (76), Expect = 2e-034
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataacatcaacggtg 624
Query: 64 gtccttcagactgaca 79
||||||||||||||||
Sbjct: 625 gtccttcagactgaca 640
>gb|BM324254.1|BM324254 PIC1_26_B07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 558
Score = 101 bits (51), Expect = 1e-019
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 4 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataaca 54
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gcaataattcgtcatccacgaattggtgaatatgcatttggattcataaca 558
>gb|CW070746.1|CW070746 104_322_10590981_114_30544 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10590981, DNA
sequence
Length = 708
Score = 81.8 bits (41), Expect = 1e-013
Identities = 86/100 (86%), Gaps = 2/100 (2%)
Strand = Plus / Minus
Query: 918 gtccaaaatgctaacgtctatgcttgaggtgcattattgattaaattcgtttataactgt 977
|||||||||| ||||||| | || ||||||| | | |||||||||||||||| ||||||
Sbjct: 683 gtccaaaatgttaacgtcaacgcgtgaggtgtgtgagtgattaaattcgtttacaactgt 624
Query: 978 ga--tgtataacatcttacgttacaaagagagcacacaac 1015
| ||||||||||||||||||| |||| |||||||||||
Sbjct: 623 gcgctgtataacatcttacgttataaagggagcacacaac 584
>gb|CW410942.1|CW410942 fsbb001f105o10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f105o10, DNA
sequence
Length = 747
Score = 67.9 bits (34), Expect = 2e-009
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 394 cagaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagccca 453
|||||||||||||||||||||| ||||| ||||| |||||||| | |||||||| || |
Sbjct: 225 cagaaataattgtttcaggaggaatgactatgccacaggtgatcacgtcactggaaccaa 284
Query: 454 tgccacggaaaagccagaacat 475
|| ||||| |||||||||||
Sbjct: 285 cacctcggaagagccagaacat 306
>gb|CW444206.1|CW444206 fsbb001f164l01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f164l01, DNA
sequence
Length = 786
Score = 67.9 bits (34), Expect = 2e-009
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 394 cagaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagccca 453
|||||||||||||||||||||| ||||| ||||| |||||||| | |||||||| || |
Sbjct: 374 cagaaataattgtttcaggaggaatgactatgccacaggtgatcacgtcactggaaccaa 433
Query: 454 tgccacggaaaagccagaacat 475
|| ||||| |||||||||||
Sbjct: 434 cacctcggaagagccagaacat 455
>gb|AW283881.1|AW283881 LG1_282_A07.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 446
Score = 65.9 bits (33), Expect = 7e-009
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 395 agaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagcccat 454
||||||||||||||||||||| ||||| ||||| |||||||| | |||||||| || |
Sbjct: 55 agaaataattgtttcaggaggaatgactatgccacaggtgatcacgtcactggaaccaac 114
Query: 455 gccacggaaaagccagaacat 475
|| ||||| |||||||||||
Sbjct: 115 acctcggaagagccagaacat 135
>gb|BG101804.1|BG101804 RHIZ2_22_F05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 290
Score = 65.9 bits (33), Expect = 7e-009
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 395 agaaataattgtttcaggagggatgaccatgcctcaggtgattgcatcactggagcccat 454
||||||||||||||||||||| ||||| ||||| |||||||| | |||||||| || |
Sbjct: 137 agaaataattgtttcaggaggaatgactatgccacaggtgatcacgtcactggaaccaac 196
Query: 455 gccacggaaaagccagaacat 475
|| ||||| |||||||||||
Sbjct: 197 acctcggaagagccagaacat 217
>gb|CD227672.1|CD227672 CCC1_53_D08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_53_D08_A007 3', mRNA sequence
Length = 655
Score = 42.1 bits (21), Expect = 0.10
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 23 gaattggtgaatatgcatttggatt 47
||||||| |||||||||||||||||
Sbjct: 130 gaattggcgaatatgcatttggatt 154
>gb|CX608003.1|CX608003 ANR1_32_C02.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_32_C02_A002 3', mRNA sequence
Length = 760
Score = 42.1 bits (21), Expect = 0.10
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 23 gaattggtgaatatgcatttggatt 47
||||||| |||||||||||||||||
Sbjct: 150 gaattggcgaatatgcatttggatt 174
>gb|CX612583.1|CX612583 GABR1_3_F09.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_3_F09_A002 3', mRNA sequence
Length = 724
Score = 42.1 bits (21), Expect = 0.10
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 23 gaattggtgaatatgcatttggatt 47
||||||| |||||||||||||||||
Sbjct: 262 gaattggcgaatatgcatttggatt 286
>gb|CL161950.1|CL161950 104_353_10806077_114_31828_365 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806077, DNA
sequence
Length = 709
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 27 tggtgaatatgcatttggat 46
||||||||||||||||||||
Sbjct: 459 tggtgaatatgcatttggat 478
>gb|CL161951.1|CL161951 104_353_10806077_116_31829_365 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806077, DNA
sequence
Length = 714
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 27 tggtgaatatgcatttggat 46
||||||||||||||||||||
Sbjct: 704 tggtgaatatgcatttggat 685
>gb|CW110231.1|CW110231 104_482_11103576_148_34514_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11103576, DNA
sequence
Length = 567
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 635 agaggagcagctttgtgctg 654
||||||||||||||||||||
Sbjct: 373 agaggagcagctttgtgctg 392
>gb|CW370097.1|CW370097 fsbb001f044n13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f044n13, DNA
sequence
Length = 726
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 27 tggtgaatatgcatttggat 46
||||||||||||||||||||
Sbjct: 655 tggtgaatatgcatttggat 636
>gb|CF488456.1|CF488456 POL1_50_C12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_50_C12_A002 3', mRNA sequence
Length = 564
Score = 40.1 bits (20), Expect = 0.40
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 101 gtgtgtatgtgccaacaaatcatctgtacatcggtgatat 140
|||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 155 gtgtctatgtgccaacgaaccatctttacattggtgatat 194
>gb|CN145002.1|CN145002 WOUND1_26_E07.b2_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_26_E07_A002 3', mRNA sequence
Length = 794
Score = 40.1 bits (20), Expect = 0.40
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 101 gtgtgtatgtgccaacaaatcatctgtacatcggtgatat 140
|||| ||||||||||| || ||||| ||||| ||||||||
Sbjct: 380 gtgtctatgtgccaacgaaccatctttacattggtgatat 419
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 322,212
Number of Sequences: 832831
Number of extensions: 322212
Number of successful extensions: 93705
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93618
Number of HSP's gapped (non-prelim): 69
length of query: 1041
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1021
effective length of database: 474,703,049
effective search space: 484671813029
effective search space used: 484671813029
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)