BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419355.2.1
(1174 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE357360.1|BE357360 DG1_148_A09.g1_A002 Dark Grown 1 (DG... 811 0.0
gb|AW680176.1|AW680176 WS1_4_A08.g1_A002 Water-stressed 1 (... 747 0.0
gb|CN146048.1|CN146048 WOUND1_37_D01.b1_A002 Wounded leaves... 729 0.0
gb|BE357305.1|BE357305 DG1_148_A08.g1_A002 Dark Grown 1 (DG... 704 0.0
gb|BG933489.1|BG933489 WS1_4_A08.b1_A002 Water-stressed 1 (... 636 e-180
gb|BG054290.1|BG054290 OV2_4_F12.g1_A002 Ovary 2 (OV2) Sorg... 541 e-152
gb|CN146103.1|CN146103 WOUND1_37_D01.g1_A002 Wounded leaves... 535 e-150
gb|BG356706.1|BG356706 OV2_26_H07.g1_A002 Ovary 2 (OV2) Sor... 507 e-142
gb|BE359571.1|BE359571 DG1_54_C03.g2_A002 Dark Grown 1 (DG1... 460 e-127
gb|CW438479.1|CW438479 fsbb001f156c01f0 Sorghum methylation... 333 2e-089
gb|BZ336405.1|BZ336405 hz34a11.b1 WGS-SbicolorF (JM107 adap... 240 2e-061
gb|CW175964.1|CW175964 104_588_11158234_148_36576_035 Sorgh... 240 2e-061
gb|CB926705.1|CB926705 ABA1_3_D08.g1_A012 Abscisic acid-tre... 220 2e-055
gb|BG159377.1|BG159377 OV2_7_A10.g1_A002 Ovary 2 (OV2) Sorg... 218 9e-055
gb|CW338321.1|CW338321 104_838_11484683_116_36122_038 Sorgh... 206 3e-051
gb|CW338322.1|CW338322 104_838_11484683_148_36123_038 Sorgh... 200 2e-049
gb|CW121848.1|CW121848 104_500_11110145_116_34665_079 Sorgh... 161 2e-037
gb|CW300912.1|CW300912 104_784_11463926_148_36259_055 Sorgh... 149 7e-034
gb|CB926658.1|CB926658 ABA1_3_D08.b1_A012 Abscisic acid-tre... 133 4e-029
gb|BE357300.1|BE357300 DG1_148_A08.b1_A002 Dark Grown 1 (DG... 111 1e-022
gb|BZ337170.1|BZ337170 ia85g02.g1 WGS-SbicolorF (JM107 adap... 109 6e-022
gb|CW120616.1|CW120616 104_498_11109434_116_34652_013 Sorgh... 109 6e-022
gb|CW127527.1|CW127527 104_508_11113488_116_34743_086 Sorgh... 103 4e-020
gb|BE357285.1|BE357285 DG1_148_A09.b1_A002 Dark Grown 1 (DG... 101 1e-019
gb|CD428774.1|CD428774 ETH1_36_F11.b1_A002 Ethylene-treated... 101 1e-019
gb|CW127528.1|CW127528 104_508_11113488_148_34739_086 Sorgh... 96 9e-018
gb|CF480982.1|CF480982 POL1_69_F09.b1_A002 Pollen Sorghum b... 86 9e-015
gb|BI211900.1|BI211900 IP1_62_G07.g1_A002 Immature pannicle... 50 5e-004
gb|CL178534.1|CL178534 104_386_10894651_116_31912_331 Sorgh... 42 0.11
gb|CW033326.1|CW033326 104_262_10501892_115_30362 Sorghum m... 42 0.11
gb|CW054976.1|CW054976 104_295_10516822_115_30179 Sorghum m... 42 0.11
gb|CW304452.1|CW304452 104_789_11465789_148_35707_025 Sorgh... 42 0.11
gb|CW432825.1|CW432825 fsbb001f147m01f0 Sorghum methylation... 42 0.11
gb|CW440604.1|CW440604 fsbb001f159f10k0 Sorghum methylation... 42 0.11
gb|CW180756.1|CW180756 104_595_11163123_148_36643_008 Sorgh... 40 0.45
>gb|BE357360.1|BE357360 DG1_148_A09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 703
Score = 811 bits (409), Expect = 0.0
Identities = 499/529 (94%)
Strand = Plus / Plus
Query: 273 agtgagcatgaggctagtcgtcgcttgaagactgagctacttattcagatggatggtttg 332
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 4 agtgagcatgaagctagtcgtcgcttgaagactgaactacttattcagatggatggtttg 63
Query: 333 acaaagacaaacgacttggtatttgtacttgcagctacaaatcttccctgggaattggat 392
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 64 acaaagacaaacgacttggtatttgtacttgcagctacaaatcttccatgggaattggat 123
Query: 393 gcagccatgctccgccggcttgagaagcggattcttgtaccgcttcctgaaggtgaagca 452
||||| ||||||||| ||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 124 gcagctatgctccgcaggcttgagaagcgaattcttgtaccgcttcctgaagctgaagca 183
Query: 453 aggcaagcgatgtttgaggaacttctgccagcaactacctcaaagttagaaatcccgtac 512
|||||||| ||||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct: 184 aggcaagcaatgtttgaggaacttctgccagcgactacctcaaagttagaggttccgtac 243
Query: 513 gacatactagttgaaaagaccgaaggttactctggttcagatattcgtctcgtgtgcaaa 572
||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct: 244 aacatactagttgaaaagactgaaggttactctggttcagatatccgtcttgtgtgcaaa 303
Query: 573 gaagctgccatgcaaccactgagacgtctcatgtcagttcttgaagccagtgacgagttg 632
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 304 gaagctgccatgcaaccactcagacgtctcatgtcagttcttgaagccagtgatgagttg 363
Query: 633 gttccggaggaagaactgcctgaggttggccctctgaaacctgatgatattgaacttgca 692
|| || ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 364 gtgccagaggaagaactgcctgaggttggtcctctgaaacctgaagatattgaacttgca 423
Query: 693 ttaaggaacactaggccgtcagcacatctccatgcgcatcgctatgagaagttcaaccag 752
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 424 ttaaggaacactaggccgtcagcccatctccatgcacatcgctatgagaagttcaaccag 483
Query: 753 gactacggtagccatgtcgtttgttcagagctagcatgatcttattatc 801
||||| |||||||| ||| ||||||||||| ||||||||||| |||||
Sbjct: 484 gactatggtagccaggtcctttgttcagagtcagcatgatcttgttatc 532
Score = 67.9 bits (34), Expect = 2e-009
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 877 gcatgggttaaagtgcgaggtgcaggtgcttgctgctcagat 918
|||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 661 gcataggttgaagtgcgaggtgcaggtgcttgctgctcagat 702
>gb|AW680176.1|AW680176 WS1_4_A08.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 711
Score = 747 bits (377), Expect = 0.0
Identities = 461/489 (94%)
Strand = Plus / Plus
Query: 313 ttattcagatggatggtttgacaaagacaaacgacttggtatttgtacttgcagctacaa 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttattcagatggatggtttgacaaagacaaacgacttggtatttgtacttgcagctacaa 60
Query: 373 atcttccctgggaattggatgcagccatgctccgccggcttgagaagcggattcttgtac 432
||||||| ||||||||||||||||| ||||||||| ||||||||||||| ||||||||||
Sbjct: 61 atcttccatgggaattggatgcagctatgctccgcaggcttgagaagcgaattcttgtac 120
Query: 433 cgcttcctgaaggtgaagcaaggcaagcgatgtttgaggaacttctgccagcaactacct 492
|||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 121 cgcttcctgaagctgaagcaaggcaagcaatgtttgaggaacttctgccagcgactacct 180
Query: 493 caaagttagaaatcccgtacgacatactagttgaaaagaccgaaggttactctggttcag 552
|||||||||| | |||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 181 caaagttagaggttccgtacaacatactagttgaaaagactgaaggttactctggttcag 240
Query: 553 atattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacgtctcatgtcagttc 612
|||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 241 atatccgtcttgtgtgcaaagaagctgccatgcaaccactcagacgtctcatgtcagttc 300
Query: 613 ttgaagccagtgacgagttggttccggaggaagaactgcctgaggttggccctctgaaac 672
||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct: 301 ttgaagccagtgatgagttggtgccagaggaagaactgcctgaggttggtcctctgaaac 360
Query: 673 ctgatgatattgaacttgcattaaggaacactaggccgtcagcacatctccatgcgcatc 732
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 361 ctgaagatattgaacttgcattaaggaacactaggccgtcagcccatctccatgcacatc 420
Query: 733 gctatgagaagttcaaccaggactacggtagccatgtcgtttgttcagagctagcatgat 792
||||||||||||||||||||||||| |||||||| ||| ||||||||||| ||||||||
Sbjct: 421 gctatgagaagttcaaccaggactatggtagccaggtcctttgttcagagtcagcatgat 480
Query: 793 cttattatc 801
||| |||||
Sbjct: 481 cttgttatc 489
Score = 75.8 bits (38), Expect = 8e-012
Identities = 83/99 (83%), Gaps = 8/99 (8%)
Strand = Plus / Plus
Query: 877 gcatgggttaaagtgcgaggtgcaggtgcttgctgctcagatctaagtgggcatgtggct 936
|||| |||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 618 gcataggttgaagtgcgaggtgcaggtgcttgctgctcagatct--------ctgtggct 669
Query: 937 ttgttcatgcagtctgagattttcccgaatccttgaact 975
| |||||||| |||||||||||||||| |||||||||
Sbjct: 670 cttctcatgcaggctgagattttcccgaagccttgaact 708
>gb|CN146048.1|CN146048 WOUND1_37_D01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_37_D01_A002 3', mRNA sequence
Length = 823
Score = 729 bits (368), Expect = 0.0
Identities = 455/484 (94%)
Strand = Plus / Plus
Query: 318 cagatggatggtttgacaaagacaaacgacttggtatttgtacttgcagctacaaatctt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagatggatggtttgacaaagacaaacgacttggtatttgtacttgcagctacaaatctt 60
Query: 378 ccctgggaattggatgcagccatgctccgccggcttgagaagcggattcttgtaccgctt 437
|| ||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||
Sbjct: 61 ccatgggaattggatgcagctatgctccgcaggcttgagaagcgaattcttgtaccgctt 120
Query: 438 cctgaaggtgaagcaaggcaagcgatgtttgaggaacttctgccagcaactacctcaaag 497
||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 121 cctgaagctgaagcaaggcaagcaatgtttgaggaacttctgccagcgactacctcaaag 180
Query: 498 ttagaaatcccgtacgacatactagttgaaaagaccgaaggttactctggttcagatatt 557
||||| | |||||| |||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 181 ttagaggttccgtacaacatactagttgaagagactgaaggttactctggttcagatatc 240
Query: 558 cgtctcgtgtgcaaagaagctgccatgcaaccactgagacgtctcatgtcagttcttgaa 617
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 241 cgtcttgtgtgcaaagaagctgccatgcaaccactcagacgtctcatgtcagttcttgaa 300
Query: 618 gccagtgacgagttggttccggaggaagaactgcctgaggttggccctctgaaacctgat 677
|||||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct: 301 gccagtgatgagttggtgccagaggaagaactgcctgaggttggtcctctgaaacctgaa 360
Query: 678 gatattgaacttgcattaaggaacactaggccgtcagcacatctccatgcgcatcgctat 737
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 361 gatattgaacttgcattaaggaacactaggccgtcagcccatctccatgcacatcgctat 420
Query: 738 gagaagttcaaccaggactacggtagccatgtcgtttgttcagagctagcatgatcttat 797
|||||||||||||||||||| |||||||| ||| ||||||||||| ||||||||||| |
Sbjct: 421 gagaagttcaaccaggactatggtagccaggtcctttgttcagagtcagcatgatcttgt 480
Query: 798 tatc 801
||||
Sbjct: 481 tatc 484
Score = 125 bits (63), Expect = 1e-026
Identities = 94/103 (91%), Gaps = 1/103 (0%)
Strand = Plus / Plus
Query: 986 tgattcgttctctagttacgtgtctaataaatgttagttaccctgcagaaaagtacattc 1045
||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||| ||
Sbjct: 722 tgattcgttgtctagttacgtgtcaaataaatgttaggtaccctgcagaaaagtacactc 781
Query: 1046 tggtttatatttaaaggaaaacgagccagagagcttgtctaag 1088
||| ||||||| || ||||| |||||||||||||| |||||||
Sbjct: 782 tgg-ttatattgaacggaaagcgagccagagagctggtctaag 823
Score = 75.8 bits (38), Expect = 8e-012
Identities = 83/99 (83%), Gaps = 8/99 (8%)
Strand = Plus / Plus
Query: 877 gcatgggttaaagtgcgaggtgcaggtgcttgctgctcagatctaagtgggcatgtggct 936
|||| |||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 613 gcataggttgaagtgcgaggtgcaggtgcttgctgctcagatct--------ctgtggct 664
Query: 937 ttgttcatgcagtctgagattttcccgaatccttgaact 975
| |||||||| |||||||||||||||| |||||||||
Sbjct: 665 cttctcatgcaggctgagattttcccgaagccttgaact 703
>gb|BE357305.1|BE357305 DG1_148_A08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 639
Score = 704 bits (355), Expect = 0.0
Identities = 439/467 (94%)
Strand = Plus / Plus
Query: 335 aaagacaaacgacttggtatttgtacttgcagctacaaatcttccctgggaattggatgc 394
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 aaagacaaacgacttggtatttgtacttgcagctacaaatcttccatgggaattggatgc 60
Query: 395 agccatgctccgccggcttgagaagcggattcttgtaccgcttcctgaaggtgaagcaag 454
||| ||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 61 agctatgctccgcaggcttgagaagcgaattcttgtaccgcttcctgaagctgaagcaag 120
Query: 455 gcaagcgatgtttgaggaacttctgccagcaactacctcaaagttagaaatcccgtacga 514
|||||| ||||||||||||||||||||||| ||||||||||||||||| | |||||| |
Sbjct: 121 gcaagcaatgtttgaggaacttctgccagcgactacctcaaagttagaggttccgtacaa 180
Query: 515 catactagttgaaaagaccgaaggttactctggttcagatattcgtctcgtgtgcaaaga 574
|||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 181 catactagttgaaaagactgaaggttactctggttcagatatccgtcttgtgtgcaaaga 240
Query: 575 agctgccatgcaaccactgagacgtctcatgtcagttcttgaagccagtgacgagttggt 634
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 241 agctgccatgcaaccactcagacgtctcatgtcagttcttgaagccagtgatgagttggt 300
Query: 635 tccggaggaagaactgcctgaggttggccctctgaaacctgatgatattgaacttgcatt 694
|| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 301 gccagaggaagaactgcctgaggttggtcctctgaaacctgaagatattgaacttgcatt 360
Query: 695 aaggaacactaggccgtcagcacatctccatgcgcatcgctatgagaagttcaaccagga 754
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 361 aaggaacactaggccgtcagcccatctccatgcacatcgctatgagaagttcaaccagga 420
Query: 755 ctacggtagccatgtcgtttgttcagagctagcatgatcttattatc 801
||| |||||||| ||| ||||||||||| ||||||||||| |||||
Sbjct: 421 ctatggtagccaggtcctttgttcagagtcagcatgatcttgttatc 467
Score = 67.9 bits (34), Expect = 2e-009
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 877 gcatgggttaaagtgcgaggtgcaggtgcttgctgctcagat 918
|||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 596 gcataggttgaagtgcgaggtgcaggtgcttgctgctcagat 637
>gb|BG933489.1|BG933489 WS1_4_A08.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 409
Score = 636 bits (321), Expect = e-180
Identities = 387/409 (94%)
Strand = Plus / Plus
Query: 289 gtcgtcgcttgaagactgagctacttattcagatggatggtttgacaaagacaaacgact 348
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtcgtcgcttgaagactgaactacttattcagatggatggtttgacaaagacaaacgact 60
Query: 349 tggtatttgtacttgcagctacaaatcttccctgggaattggatgcagccatgctccgcc 408
||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct: 61 tggtatttgtacttgcagctacaaatcttccatgagaattggatgcagctatgctccgca 120
Query: 409 ggcttgagaagcggattcttgtaccgcttcctgaaggtgaagcaaggcaagcgatgtttg 468
||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 121 ggcttgagaagcgaattcttgtaccgcttcctgaagctgaagcaaggcaagcaatgtttg 180
Query: 469 aggaacttctgccagcaactacctcaaagttagaaatcccgtacgacatactagttgaaa 528
|||||||||||||||| ||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 181 aggaacttctgccagcgactacctcaaagttagaggttccgtacaacatactagttgaaa 240
Query: 529 agaccgaaggttactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaac 588
|||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 241 agactgaaggttactctggttcagatatccgtcttgtgtgcaaagaagctgccatgcaac 300
Query: 589 cactgagacgtctcatgtcagttcttgaagccagtgacgagttggttccggaggaagaac 648
|||| |||||||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct: 301 cactcagacgtctcatgtcagttcttgaagccagtgatgagttggtgccagaggaagaac 360
Query: 649 tgcctgaggttggccctctgaaacctgatgatattgaacttgcattaag 697
||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 361 tgcctgaggttggtcctctgaaacctgaagatattgaacttgcattaag 409
>gb|BG054290.1|BG054290 OV2_4_F12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 599
Score = 541 bits (273), Expect = e-152
Identities = 359/388 (92%)
Strand = Plus / Plus
Query: 414 gagaagcggattcttgtaccgcttcctgaaggtgaagcaaggcaagcgatgtttgaggaa 473
|||||||| |||||||||||||||| ||||| ||||||||||||||| ||||||||||||
Sbjct: 1 gagaagcgaattcttgtaccgcttcttgaagctgaagcaaggcaagcaatgtttgaggaa 60
Query: 474 cttctgccagcaactacctcaaagttagaaatcccgtacgacatactagttgaaaagacc 533
||||||||||| || |||||||||||||| | |||||| ||||| |||||||||||||
Sbjct: 61 cttctgccagcgaccacctcaaagttagaggttccgtacaacatattagttgaaaagact 120
Query: 534 gaaggttactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactg 593
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 121 gaaggttactctggttcagatatccgtcttgtgtgcaaagaagctgccatgcaaccactc 180
Query: 594 agacgtctcatgtcagttcttgaagccagtgacgagttggttccggaggaagaactgcct 653
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct: 181 agacgtctcatgtcagttcttgaagccagtgatgagttggtgccagaggaagaactgcct 240
Query: 654 gaggttggccctctgaaacctgatgatattgaacttgcattaaggaacactaggccgtca 713
|||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 241 gaggttggtcctctgaaacctgaagatattgaacttgcattaaggaacantaggccgtca 300
Query: 714 gcacatctccatgcgcatcgctatgagaagttcaaccaggactacggtagccatgtcgtt 773
|| ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| ||
Sbjct: 301 gcccatctccatgcacatcgctatgagaagttcaaccaggactatggtagccaggtcctt 360
Query: 774 tgttcagagctagcatgatcttattatc 801
||||||||| ||||||||||| |||||
Sbjct: 361 tgttcagagtcagcatgatcttgttatc 388
Score = 71.9 bits (36), Expect = 1e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 877 gcatgggttaaagtgcgaggtgcaggtgcttgctgctcagatct 920
|||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 517 gcataggttgaagtgcgaggtgcaggtgcttgctgctcagatct 560
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 941 tcatgcagtctgagattttcccgaa 965
|||||||| ||||||||||||||||
Sbjct: 572 tcatgcaggctgagattttcccgaa 596
>gb|CN146103.1|CN146103 WOUND1_37_D01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_37_D01_A002 5', mRNA sequence
Length = 742
Score = 535 bits (270), Expect = e-150
Identities = 318/334 (95%)
Strand = Plus / Plus
Query: 169 agaagcttgtcaaagttctgtttgagcttgctaggcatcatgcaccatccacaatattcc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 404 agaagcttgtcaaagttctgtttgagcttgctaggcatcatgcaccatccacaatatgtc 463
Query: 229 ttgatgaaatagatgctatcatcagccagcgtggtgaagctcgcagtgagcatgaggcta 288
|||||||||||||||| || |||||||| |||||||||||||| ||||||||||| ||||
Sbjct: 464 ttgatgaaatagatgccattatcagccaccgtggtgaagctcgtagtgagcatgaagcta 523
Query: 289 gtcgtcgcttgaagactgagctacttattcagatggatggtttgacaaagacaaacgact 348
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gtcgtcgcttgaagactgaactacttattcagatggatggtttgacaaagacaaacgact 583
Query: 349 tggtatttgtacttgcagctacaaatcttccctgggaattggatgcagccatgctccgcc 408
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 584 tggtatttgtacttgcagctacaaatcttccatgggaattggatgcagctatgctccgca 643
Query: 409 ggcttgagaagcggattcttgtaccgcttcctgaaggtgaagcaaggcaagcgatgtttg 468
||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 644 ggcttgagaagcgaattcttgtaccgcttcctgaagctgaagcaaggcaagcaatgtttg 703
Query: 469 aggaacttctgccagcaactacctcaaagttaga 502
| |||||||||||||| |||||||||||||||||
Sbjct: 704 aagaacttctgccagcgactacctcaaagttaga 737
>gb|BG356706.1|BG356706 OV2_26_H07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 518
Score = 507 bits (256), Expect = e-142
Identities = 325/348 (93%)
Strand = Plus / Plus
Query: 454 ggcaagcgatgtttgaggaacttctgccagcaactacctcaaagttagaaatcccgtacg 513
||||||| ||||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct: 1 ggcaagcaatgtttgaggaacttctgccagcgactacctcaaagttagaggttccgtaca 60
Query: 514 acatactagttgaaaagaccgaaggttactctggttcagatattcgtctcgtgtgcaaag 573
||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 61 acatactagttgaaaagactgaaggttactctggttcagatatccgtcttgtgtgcaaag 120
Query: 574 aagctgccatgcaaccactgagacgtctcatgtcagttcttgaagccagtgacgagttgg 633
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 121 aagctgccatgcaaccactcagacgtctcatgtcagttcttgaagccagtgatgagttgg 180
Query: 634 ttccggaggaagaactgcctgaggttggccctctgaaacctgatgatattgaacttgcat 693
| || ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 181 tgccagaggaagaactgcctgaggttggtcctctgaaacctgaagatattgaacttgcat 240
Query: 694 taaggaacactaggccgtcagcacatctccatgcgcatcgctatgagaagttcaaccagg 753
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 241 taaggaacactaggccgtcagcccatctccatgcacatcgctatgagaagttcaaccagg 300
Query: 754 actacggtagccatgtcgtttgttcagagctagcatgatcttattatc 801
|||| |||||||| ||| ||||||||||| ||||||||||| |||||
Sbjct: 301 actatggtagccaggtcctttgttcagagtcagcatgatcttgttatc 348
Score = 67.9 bits (34), Expect = 2e-009
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 877 gcatgggttaaagtgcgaggtgcaggtgcttgctgctcagat 918
|||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 477 gcataggttgaagtgcgaggtgcaggtgcttgctgctcagat 518
>gb|BE359571.1|BE359571 DG1_54_C03.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 611
Score = 460 bits (232), Expect = e-127
Identities = 295/316 (93%)
Strand = Plus / Plus
Query: 486 actacctcaaagttagaaatcccgtacgacatactagttgaaaagaccgaaggttactct 545
||||||||||||||||| | |||||| ||||||||||||||||||| ||||||||||||
Sbjct: 3 actacctcaaagttagaggttccgtacaacatactagttgaaaagactgaaggttactct 62
Query: 546 ggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacgtctcatg 605
||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 63 ggttcagatatccgtcttgtgtgcaaagaagctgccatgcaaccactcagacgtctcatg 122
Query: 606 tcagttcttgaagccagtgacgagttggttccggaggaagaactgcctgaggttggccct 665
|||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |||
Sbjct: 123 tcagttcttgaagccagtgatgagttggtgccagaggaagaactgcctgaggttggtcct 182
Query: 666 ctgaaacctgatgatattgaacttgcattaaggaacactaggccgtcagcacatctccat 725
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 183 ctgaaacctgaagatattgaacttgcattaaggaacactaggccgtcagcccatctccat 242
Query: 726 gcgcatcgctatgagaagttcaaccaggactacggtagccatgtcgtttgttcagagcta 785
|| ||||||||||||||||||||||||||||| |||||||| ||| ||||||||||| |
Sbjct: 243 gcacatcgctatgagaagttcaaccaggactatggtagccaggtcctttgttcagagtca 302
Query: 786 gcatgatcttattatc 801
|||||||||| |||||
Sbjct: 303 gcatgatcttgttatc 318
Score = 85.7 bits (43), Expect = 9e-015
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 986 tgattcgttctctagttacgtgtctaataaatgttagttaccctgcagaaaagta 1040
||||||||| |||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 557 tgattcgttgtctagttacgtgtcaaataaatgttaggtaccctgcagaaaagta 611
Score = 75.8 bits (38), Expect = 8e-012
Identities = 83/99 (83%), Gaps = 8/99 (8%)
Strand = Plus / Plus
Query: 877 gcatgggttaaagtgcgaggtgcaggtgcttgctgctcagatctaagtgggcatgtggct 936
|||| |||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 447 gcataggttgaagtgcgaggtgcaggtgcttgctgctcagatct--------ctgtggct 498
Query: 937 ttgttcatgcagtctgagattttcccgaatccttgaact 975
| |||||||| |||||||||||||||| |||||||||
Sbjct: 499 cttctcatgcaggctgagattttcccgaagccttgaact 537
>gb|CW438479.1|CW438479 fsbb001f156c01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f156c01, DNA
sequence
Length = 788
Score = 333 bits (168), Expect = 2e-089
Identities = 210/224 (93%)
Strand = Plus / Minus
Query: 422 gattcttgtaccgcttcctgaaggtgaagcaaggcaagcgatgtttgaggaacttctgcc 481
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 258 gattcttgtaccgcttcctgaagctgaagcaaggcaagcaatgtttgaggaacttctgcc 199
Query: 482 agcaactacctcaaagttagaaatcccgtacgacatactagttgaaaagaccgaaggtta 541
||| ||||||||||||||||| | |||||| ||||||||||||||||||| ||||||||
Sbjct: 198 agcgactacctcaaagttagaggttccgtacaacatactagttgaaaagactgaaggtta 139
Query: 542 ctctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactgagacgtct 601
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 138 ctctggttcagatatccgtcttgtgtgcaaagaagctgccatgcaaccactcagacgtct 79
Query: 602 catgtcagttcttgaagccagtgacgagttggttccggaggaag 645
|||||||||||||||||||||||| |||||||| || |||||||
Sbjct: 78 catgtcagttcttgaagccagtgatgagttggtgccagaggaag 35
Score = 274 bits (138), Expect = 2e-071
Identities = 156/162 (96%)
Strand = Plus / Minus
Query: 159 ggagattcagagaagcttgtcaaagttctgtttgagcttgctaggcatcatgcaccatcc 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ggagattcagagaagcttgtcaaagttctgtttgagcttgctaggcatcatgcaccatcc 708
Query: 219 acaatattccttgatgaaatagatgctatcatcagccagcgtggtgaagctcgcagtgag 278
|||||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct: 707 acaatatttcttgatgaaatagatgccattatcagccagcgtggtgaagctcgtagtgag 648
Query: 279 catgaggctagtcgtcgcttgaagactgagctacttattcag 320
||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 647 catgaagctagtcgtcgcttgaagactgaactacttattcag 606
Score = 182 bits (92), Expect = 5e-044
Identities = 101/104 (97%)
Strand = Plus / Minus
Query: 318 cagatggatggtttgacaaagacaaacgacttggtatttgtacttgcagctacaaatctt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 cagatggatggtttgacaaagacaaacgacttggtatttgtacttgcagctacaaatctt 391
Query: 378 ccctgggaattggatgcagccatgctccgccggcttgagaagcg 421
|| ||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 390 ccatgggaattggatgcagctatgctccgcaggcttgagaagcg 347
>gb|BZ336405.1|BZ336405 hz34a11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hz34a11 5', DNA sequence
Length = 629
Score = 240 bits (121), Expect = 2e-061
Identities = 157/169 (92%)
Strand = Plus / Plus
Query: 644 agaactgcctgaggttggccctctgaaacctgatgatattgaacttgcattaaggaacac 703
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 186 agaactgcctgaggttggtcctctgaaacctgaagatattgaacttgcattaaggaacac 245
Query: 704 taggccgtcagcacatctccatgcgcatcgctatgagaagttcaaccaggactacggtag 763
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 246 taggccgtcagcccatctccatgcacatcgctatgagaagttcaaccaggactatggtag 305
Query: 764 ccatgtcgtttgttcagagctagcatgatcttattatcgggtaaggctt 812
||| ||| ||||||||||| ||||||||||| ||||| |||| |||||
Sbjct: 306 ccaggtcctttgttcagagtcagcatgatcttgttatcaggtatggctt 354
Score = 71.9 bits (36), Expect = 1e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 877 gcatgggttaaagtgcgaggtgcaggtgcttgctgctcagatct 920
|||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 567 gcataggttgaagtgcgaggtgcaggtgcttgctgctcagatct 610
>gb|CW175964.1|CW175964 104_588_11158234_148_36576_035 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158234, DNA
sequence
Length = 719
Score = 240 bits (121), Expect = 2e-061
Identities = 157/169 (92%)
Strand = Plus / Plus
Query: 644 agaactgcctgaggttggccctctgaaacctgatgatattgaacttgcattaaggaacac 703
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 271 agaactgcctgaggttggtcctctgaaacctgaagatattgaacttgcattaaggaacac 330
Query: 704 taggccgtcagcacatctccatgcgcatcgctatgagaagttcaaccaggactacggtag 763
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 331 taggccgtcagcccatctccatgcacatcgctatgagaagttcaaccaggactatggtag 390
Query: 764 ccatgtcgtttgttcagagctagcatgatcttattatcgggtaaggctt 812
||| ||| ||||||||||| ||||||||||| ||||| |||| |||||
Sbjct: 391 ccaggtcctttgttcagagtcagcatgatcttgttatcaggtatggctt 439
Score = 174 bits (88), Expect = 1e-041
Identities = 106/112 (94%)
Strand = Plus / Plus
Query: 534 gaaggttactctggttcagatattcgtctcgtgtgcaaagaagctgccatgcaaccactg 593
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 2 gaaggttactctggttcagatatccgtcttgtgtgcaaagaagctgccatgcaaccactc 61
Query: 594 agacgtctcatgtcagttcttgaagccagtgacgagttggttccggaggaag 645
|||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct: 62 agacgtctcatgtcagttcttgaagccagtgatgagttggtgccagaggaag 113
Score = 71.9 bits (36), Expect = 1e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 877 gcatgggttaaagtgcgaggtgcaggtgcttgctgctcagatct 920
|||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 652 gcataggttgaagtgcgaggtgcaggtgcttgctgctcagatct 695
>gb|CB926705.1|CB926705 ABA1_3_D08.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_3_D08_A012 5', mRNA sequence
Length = 607
Score = 220 bits (111), Expect = 2e-055
Identities = 138/147 (93%)
Strand = Plus / Plus
Query: 1 acccaaaatacttcactggtctcctttctccatggaaaggcatcttactttttggccccc 60
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 461 acccaaaatacttcactggtcttctttctccctggaaaggcatcttactttttggccccc 520
Query: 61 caggaacaggaaagacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttct 120
|| | ||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 521 caaggacaggaaagacaatgctggtcaaagcggttgctactgagtgcaaaaccaccttct 580
Query: 121 tcaacatttcagcatcatcaattgtca 147
||||||| ||||| |||||||||||||
Sbjct: 581 tcaacatatcagcttcatcaattgtca 607
>gb|BG159377.1|BG159377 OV2_7_A10.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 474
Score = 218 bits (110), Expect = 9e-055
Identities = 140/150 (93%)
Strand = Plus / Plus
Query: 652 ctgaggttggccctctgaaacctgatgatattgaacttgcattaaggaacactaggccgt 711
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgaggttggtcctctgaaacctgaagatattgaacttgcattaaggaacactaggccgt 60
Query: 712 cagcacatctccatgcgcatcgctatgagaagttcaaccaggactacggtagccatgtcg 771
|||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 61 cagcccatctccatgcacatcgctatgagaagttcaaccaggactatggtagccaggtcc 120
Query: 772 tttgttcagagctagcatgatcttattatc 801
||||||||||| ||||||||||| |||||
Sbjct: 121 tttgttcagagtcagcatgatcttgttatc 150
Score = 97.6 bits (49), Expect = 2e-018
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 986 tgattcgttctctagttacgtgtctaataaatgttagttaccctgcagaaaagtacattc 1045
||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||| ||
Sbjct: 388 tgattcgttgtctagttacgtgtcaaataaatgttaggtaccctgcagaaaagtacactc 447
Query: 1046 tggtt 1050
|||||
Sbjct: 448 tggtt 452
Score = 75.8 bits (38), Expect = 8e-012
Identities = 83/99 (83%), Gaps = 8/99 (8%)
Strand = Plus / Plus
Query: 877 gcatgggttaaagtgcgaggtgcaggtgcttgctgctcagatctaagtgggcatgtggct 936
|||| |||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 279 gcataggttgaagtgcgaggtgcaggtgcttgctgctcagatct--------ctgtggct 330
Query: 937 ttgttcatgcagtctgagattttcccgaatccttgaact 975
| |||||||| |||||||||||||||| |||||||||
Sbjct: 331 cttctcatgcaggctgagattttcccgaagccttgaact 369
>gb|CW338321.1|CW338321 104_838_11484683_116_36122_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11484683, DNA
sequence
Length = 525
Score = 206 bits (104), Expect = 3e-051
Identities = 143/156 (91%)
Strand = Plus / Plus
Query: 646 aactgcctgaggttggccctctgaaacctgatgatattgaacttgcattaaggaacacta 705
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 30 aactgcctgaggttggtcctctgaaacctgaagatattgaacttgcattaaggaacacta 89
Query: 706 ggccgtcagcacatctccatgcgcatcgctatgagaagttcaaccaggactacggtagcc 765
|| ||||||| ||||||||||| ||| ||||||||||||||||||||||||| |||||||
Sbjct: 90 gggcgtcagcccatctccatgcacattgctatgagaagttcaaccaggactatggtagcc 149
Query: 766 atgtcgtttgttcagagctagcatgatcttattatc 801
| | | ||||||||||| ||||||||||| |||||
Sbjct: 150 aggccctttgttcagagtcagcatgatcttgttatc 185
Score = 63.9 bits (32), Expect = 3e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 889 gtgcgaggtgcaggtgcttgctgctcagatct 920
||||||||||||||||||||||||||||||||
Sbjct: 421 gtgcgaggtgcaggtgcttgctgctcagatct 452
>gb|CW338322.1|CW338322 104_838_11484683_148_36123_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11484683, DNA
sequence
Length = 619
Score = 200 bits (101), Expect = 2e-049
Identities = 153/169 (90%), Gaps = 1/169 (0%)
Strand = Plus / Minus
Query: 986 tgattcgttctctagttacgtgtctaataaatgttagttaccctgcagaaaagtacattc 1045
||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||| ||
Sbjct: 379 tgattcgttgtctagttacgtgtcaaataaatgttaggtaccctgcagaaaagtacactc 320
Query: 1046 tggtttatatttaaaggaaaacgagccagagagcttgtctaagtttcttctgattgttgg 1105
||||| ||||| || ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 319 tggtt-atattgaacggaaagcgagccagagagctggtctaagtttcttctgattgttgg 261
Query: 1106 tgtaattacccaactcgttaaaccaagctttaacaacaaattcttgcat 1154
|| || | ||| ||||||||||| ||||||||||||| ||||||||||
Sbjct: 260 tgcaaatgtccagctcgttaaacctagctttaacaacatattcttgcat 212
Score = 71.9 bits (36), Expect = 1e-010
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 877 gcatgggttaaagtgcgaggtgcaggtgcttgctgctcagatct 920
|||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 488 gcataggttgaagtgcgaggtgcaggtgcttgctgctcagatct 445
>gb|CW121848.1|CW121848 104_500_11110145_116_34665_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110145, DNA
sequence
Length = 412
Score = 161 bits (81), Expect = 2e-037
Identities = 148/169 (87%), Gaps = 1/169 (0%)
Strand = Plus / Plus
Query: 986 tgattcgttctctagttacgtgtctaataaatgttagttaccctgcagaaaagtacattc 1045
|||||| || ||||| |||||||| |||||||||||| ||||||||| ||||||||| ||
Sbjct: 185 tgattccttgtctaggtacgtgtcaaataaatgttaggtaccctgcataaaagtacactc 244
Query: 1046 tggtttatatttaaaggaaaacgagccagagagcttgtctaagtttcttctgattgttgg 1105
||||| ||||| || ||||| ||||||| |||||| ||||||||||||||||||||||||
Sbjct: 245 tggtt-atattgaacggaaagcgagccacagagctggtctaagtttcttctgattgttgg 303
Query: 1106 tgtaattacccaactcgttaaaccaagctttaacaacaaattcttgcat 1154
|| || | ||| |||||||||| ||||||||||||| ||||||||||
Sbjct: 304 tgcaaatgtccaggtcgttaaacctagctttaacaacatattcttgcat 352
Score = 75.8 bits (38), Expect = 8e-012
Identities = 83/99 (83%), Gaps = 8/99 (8%)
Strand = Plus / Plus
Query: 877 gcatgggttaaagtgcgaggtgcaggtgcttgctgctcagatctaagtgggcatgtggct 936
|||| |||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 76 gcataggttgaagtgcgaggtgcaggtgcttgctgctcagatct--------ctgtggct 127
Query: 937 ttgttcatgcagtctgagattttcccgaatccttgaact 975
| |||||||| |||||||||||||||| |||||||||
Sbjct: 128 cttctcatgcaggctgagattttcccgaagccttgaact 166
>gb|CW300912.1|CW300912 104_784_11463926_148_36259_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463926, DNA
sequence
Length = 728
Score = 149 bits (75), Expect = 7e-034
Identities = 118/131 (90%), Gaps = 1/131 (0%)
Strand = Plus / Plus
Query: 1024 taccctgcagaaaagtacattctggtttatatttaaaggaaaacgagccagagagcttgt 1083
||||||||||||||||||| ||||||| ||||| || ||||| |||||||||||||| ||
Sbjct: 5 taccctgcagaaaagtacactctggtt-atattgaacggaaagcgagccagagagctggt 63
Query: 1084 ctaagtttcttctgattgttggtgtaattacccaactcgttaaaccaagctttaacaaca 1143
|||||||||||||||||||||||| || | ||| ||||||||||| |||||||||||||
Sbjct: 64 ctaagtttcttctgattgttggtgcaaatgtccagctcgttaaacctagctttaacaaca 123
Query: 1144 aattcttgcat 1154
||||||||||
Sbjct: 124 tattcttgcat 134
>gb|CB926658.1|CB926658 ABA1_3_D08.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_3_D08_A012 3', mRNA sequence
Length = 453
Score = 133 bits (67), Expect = 4e-029
Identities = 100/111 (90%)
Strand = Plus / Plus
Query: 691 cattaaggaacactaggccgtcagcacatctccatgcgcatcgctatgagaagttcaacc 750
|||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||| ||
Sbjct: 1 cattaaggaacattaggccgtcagcccatctccatgcacatcgctatgagaagttcaccc 60
Query: 751 aggactacggtagccatgtcgtttgttcagagctagcatgatcttattatc 801
||| ||| |||||||| ||| ||||||||||| ||||||||||| |||||
Sbjct: 61 aggcctatggtagccaggtcctttgttcagagtcagcatgatcttgttatc 111
Score = 109 bits (55), Expect = 6e-022
Identities = 96/107 (89%), Gaps = 2/107 (1%)
Strand = Plus / Plus
Query: 986 tgattcgttctctagttacgtgtctaataaatgttagttaccctgcagaaaagtacattc 1045
||||||||| |||||||||||||| |||||||||||| | ||||||||||||||||| ||
Sbjct: 349 tgattcgttgtctagttacgtgtcaaataaatgttaggtcccctgcagaaaagtacactc 408
Query: 1046 tggtttatatttaaaggaaaacgagccagagagcttgtctaagtttc 1092
||| ||||| | || ||||| |||||||||||||| |||||||||||
Sbjct: 409 tgg-ttata-tgaacggaaagcgagccagagagctggtctaagtttc 453
Score = 75.8 bits (38), Expect = 8e-012
Identities = 83/99 (83%), Gaps = 8/99 (8%)
Strand = Plus / Plus
Query: 877 gcatgggttaaagtgcgaggtgcaggtgcttgctgctcagatctaagtgggcatgtggct 936
|||| |||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 240 gcataggttgaagtgcgaggtgcaggtgcttgctgctcagatct--------ctgtggct 291
Query: 937 ttgttcatgcagtctgagattttcccgaatccttgaact 975
| |||||||| |||||||||||||||| |||||||||
Sbjct: 292 cttctcatgcaggctgagattttcccgaagccttgaact 330
>gb|BE357300.1|BE357300 DG1_148_A08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 523
Score = 111 bits (56), Expect = 1e-022
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 1 acccaaaatacttcactggtctcctttctccatggaaaggcatcttactttttggccccc 60
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 459 acccaaaatacttcactggtcttctttctccctggaaaggcatcttactttttggccccc 518
Query: 61 cagg 64
||||
Sbjct: 519 cagg 522
>gb|BZ337170.1|BZ337170 ia85g02.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia85g02 5', DNA sequence
Length = 713
Score = 109 bits (55), Expect = 6e-022
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 8 atacttcactggtctcctttctccatggaaaggcatcttactttttggccccccaggaac 67
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 358 atacttcactggtcttctttctccctggaaaggcatcttactttttggccccccagggac 417
Query: 68 aggaaag 74
|||||||
Sbjct: 418 aggaaag 424
Score = 97.6 bits (49), Expect = 2e-018
Identities = 59/61 (96%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 73 agacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaacatttcag 132
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 636 agacaatgctggcaaaagcggttgctactgagtgcaaaa-caccttcttcaacatttcag 694
Query: 133 c 133
|
Sbjct: 695 c 695
>gb|CW120616.1|CW120616 104_498_11109434_116_34652_013 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11109434, DNA sequence
Length = 633
Score = 109 bits (55), Expect = 6e-022
Identities = 64/67 (95%)
Strand = Plus / Minus
Query: 8 atacttcactggtctcctttctccatggaaaggcatcttactttttggccccccaggaac 67
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 77 atacttcactggtcttctttctccctggaaaggcatcttactttttggccccccagggac 18
Query: 68 aggaaag 74
|||||||
Sbjct: 17 aggaaag 11
>gb|CW127527.1|CW127527 104_508_11113488_116_34743_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11113488, DNA
sequence
Length = 519
Score = 103 bits (52), Expect = 4e-020
Identities = 103/120 (85%)
Strand = Plus / Minus
Query: 192 gagcttgctaggcatcatgcaccatccacaatattccttgatgaaatagatgctatcatc 251
|||||||| ||||||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 405 gagcttgcaaggcatcatgcaccatctaccattttccttgatgagattgatgctatcatt 346
Query: 252 agccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttgaagactgagcta 311
|| || |||||||||||||| ||||| ||||| ||||| || || ||||| || ||||||
Sbjct: 345 agtcaacgtggtgaagctcgtagtgaacatgaagctagccggcgattgaaaacggagcta 286
>gb|BE357285.1|BE357285 DG1_148_A09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 517
Score = 101 bits (51), Expect = 1e-019
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 1 acccaaaatacttcactggtctcctttctccatggaaaggcatcttactttttggcccc 59
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 459 acccaaaatacttcactggtcttctttctccctggaaaggcatcttactttttggcccc 517
>gb|CD428774.1|CD428774 ETH1_36_F11.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_36_F11_A002 3', mRNA sequence
Length = 704
Score = 101 bits (51), Expect = 1e-019
Identities = 156/191 (81%)
Strand = Plus / Plus
Query: 240 gatgctatcatcagccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttg 299
||||||||||| || || |||||||||||||| || || ||||| ||||| || || |||
Sbjct: 9 gatgctatcattagtcaacgtggtgaagctcgtagcgaacatgaagctagccggcgattg 68
Query: 300 aagactgagctacttattcagatggatggtttgacaaagacaaacgacttggtatttgta 359
|| || |||||| | || ||||||||||| ||||| |||||| | || | || |||||
Sbjct: 69 aaaacggagctattaatacagatggatgggttgactaagacagatgagcttgtttttgtt 128
Query: 360 cttgcagctacaaatcttccctgggaattggatgcagccatgctccgccggcttgagaag 419
|| ||||| |||||| | || ||||| ||||||||||| ||||| || ||||| ||||||
Sbjct: 129 ctagcagcaacaaatttaccatgggagttggatgcagcaatgctgcgtcggctggagaag 188
Query: 420 cggattcttgt 430
|| ||||||||
Sbjct: 189 cgtattcttgt 199
>gb|CW127528.1|CW127528 104_508_11113488_148_34739_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11113488, DNA
sequence
Length = 657
Score = 95.6 bits (48), Expect = 9e-018
Identities = 102/120 (85%)
Strand = Plus / Plus
Query: 192 gagcttgctaggcatcatgcaccatccacaatattccttgatgaaatagatgctatcatc 251
|||||||| ||||||||||||||||| || || ||||||||||| || |||||||||||
Sbjct: 354 gagcttgcaaggcatcatgcaccatctaccattttccttgatgagattgatgctatcatt 413
Query: 252 agccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttgaagactgagcta 311
|| || |||||||||||||| || || ||||| ||||| || || ||||| || ||||||
Sbjct: 414 agtcaacgtggtgaagctcgtagcgaacatgaagctagccggcgattgaaaacggagcta 473
>gb|CF480982.1|CF480982 POL1_69_F09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_69_F09_A002 3', mRNA sequence
Length = 714
Score = 85.7 bits (43), Expect = 9e-015
Identities = 64/71 (90%)
Strand = Plus / Minus
Query: 1084 ctaagtttcttctgattgttggtgtaattacccaactcgttaaaccaagctttaacaaca 1143
|||||||||||||||||||||||| || | ||| ||||||||||| |||||||||||||
Sbjct: 714 ctaagtttcttctgattgttggtgcaaatgtccagctcgttaaacctagctttaacaaca 655
Query: 1144 aattcttgcat 1154
||||||||||
Sbjct: 654 tattcttgcat 644
>gb|BI211900.1|BI211900 IP1_62_G07.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 518
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 30 ccatggaaaggcatcttactttttggccccccaggaacaggaaagacaatgct 82
||||| ||||| || |||||||||||||| || || || ||||||||||||||
Sbjct: 135 ccatgtaaaggaattttactttttggcccacctggtacgggaaagacaatgct 187
>gb|CL178534.1|CL178534 104_386_10894651_116_31912_331 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10894651, DNA
sequence
Length = 747
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 892 cgaggtgcaggtgcttgctgc 912
|||||||||||||||||||||
Sbjct: 226 cgaggtgcaggtgcttgctgc 246
>gb|CW033326.1|CW033326 104_262_10501892_115_30362 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501892, DNA
sequence
Length = 739
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 892 cgaggtgcaggtgcttgctgc 912
|||||||||||||||||||||
Sbjct: 456 cgaggtgcaggtgcttgctgc 436
>gb|CW054976.1|CW054976 104_295_10516822_115_30179 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10516822, DNA
sequence
Length = 480
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 892 cgaggtgcaggtgcttgctgc 912
|||||||||||||||||||||
Sbjct: 212 cgaggtgcaggtgcttgctgc 232
>gb|CW304452.1|CW304452 104_789_11465789_148_35707_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465789, DNA
sequence
Length = 682
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 892 cgaggtgcaggtgcttgctgc 912
|||||||||||||||||||||
Sbjct: 159 cgaggtgcaggtgcttgctgc 179
>gb|CW432825.1|CW432825 fsbb001f147m01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f147m01, DNA
sequence
Length = 716
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 892 cgaggtgcaggtgcttgctgc 912
|||||||||||||||||||||
Sbjct: 427 cgaggtgcaggtgcttgctgc 407
>gb|CW440604.1|CW440604 fsbb001f159f10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f159f10, DNA
sequence
Length = 694
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 892 cgaggtgcaggtgcttgctgc 912
|||||||||||||||||||||
Sbjct: 23 cgaggtgcaggtgcttgctgc 3
>gb|CW180756.1|CW180756 104_595_11163123_148_36643_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11163123, DNA
sequence
Length = 643
Score = 40.1 bits (20), Expect = 0.45
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1130 aagctttaacaacaaattct 1149
||||||||||||||||||||
Sbjct: 78 aagctttaacaacaaattct 59
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 292,514
Number of Sequences: 832831
Number of extensions: 292514
Number of successful extensions: 77516
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77424
Number of HSP's gapped (non-prelim): 84
length of query: 1174
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1154
effective length of database: 474,703,049
effective search space: 547807318546
effective search space used: 547807318546
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)