BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419155.2.3
(1354 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD213481.1|CD213481 HS1_41_A12.b1_A012 Heat-shocked seed... 486 e-135
gb|BZ337767.1|BZ337767 ia90h05.g1 WGS-SbicolorF (JM107 adap... 268 1e-069
gb|BE360049.1|BE360049 DG1_61_E06.b1_A002 Dark Grown 1 (DG1... 254 2e-065
gb|CF484192.1|CF484192 POL1_3_F02.g1_A002 Pollen Sorghum bi... 254 2e-065
gb|CF484842.1|CF484842 POL1_27_G06.g1_A002 Pollen Sorghum b... 254 2e-065
gb|CF484845.1|CF484845 POL1_27_G09.g1_A002 Pollen Sorghum b... 254 2e-065
gb|CF487727.1|CF487727 POL1_45_C06.g1_A002 Pollen Sorghum b... 254 2e-065
gb|CF488282.1|CF488282 POL1_48_H01.g1_A002 Pollen Sorghum b... 254 2e-065
gb|CF480880.1|CF480880 POL1_68_C06.g1_A002 Pollen Sorghum b... 246 5e-063
gb|CF481421.1|CF481421 POL1_71_H06.g1_A002 Pollen Sorghum b... 246 5e-063
gb|CF479950.1|CF479950 POL1_62_G06.g1_A002 Pollen Sorghum b... 234 2e-059
gb|CW209518.1|CW209518 104_639_11189291_116_37080_038 Sorgh... 232 7e-059
gb|CW209519.1|CW209519 104_639_11189291_148_37081_038 Sorgh... 232 7e-059
gb|CF485947.1|CF485947 POL1_34_F03.g1_A002 Pollen Sorghum b... 220 3e-055
gb|CF482868.1|CF482868 POL1_9_D11.g1_A002 Pollen Sorghum bi... 214 2e-053
gb|CF486932.1|CF486932 POL1_40_E12.g1_A002 Pollen Sorghum b... 210 2e-052
gb|CL150647.1|CL150647 104_332_10778681_116_31358_233 Sorgh... 196 4e-048
gb|CF487647.1|CF487647 POL1_45_C06.b1_A002 Pollen Sorghum b... 145 1e-032
gb|CF484760.1|CF484760 POL1_27_G06.b1_A002 Pollen Sorghum b... 139 8e-031
gb|CF484762.1|CF484762 POL1_27_G09.b1_A002 Pollen Sorghum b... 139 8e-031
gb|CF486859.1|CF486859 POL1_40_E12.b1_A002 Pollen Sorghum b... 139 8e-031
gb|CW045924.1|CW045924 104_282_10509856_115_30226 Sorghum m... 127 3e-027
gb|CL150646.1|CL150646 104_332_10778681_114_31357_233 Sorgh... 90 6e-016
gb|CF481336.1|CF481336 POL1_71_H06.b1_A002 Pollen Sorghum b... 86 1e-014
gb|CF484115.1|CF484115 POL1_3_F02.b1_A002 Pollen Sorghum bi... 86 1e-014
gb|BG487760.1|BG487760 FM1_73_H09.b1_A003 Floral-Induced Me... 80 6e-013
gb|CW154813.1|CW154813 104_557_11145800_116_36358_030 Sorgh... 78 2e-012
gb|CW166533.1|CW166533 104_575_11153105_116_36837_073 Sorgh... 78 2e-012
gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region,... 78 2e-012
gb|CF480815.1|CF480815 POL1_68_C06.b1_A002 Pollen Sorghum b... 74 4e-011
gb|CF490075.1|CF490075 POL1_62_G06.b1_A002 Pollen Sorghum b... 74 4e-011
gb|CL188188.1|CL188188 104_404_10901424_114_32445_090 Sorgh... 72 1e-010
gb|CL188189.1|CL188189 104_404_10901424_116_32449_090 Sorgh... 72 1e-010
gb|CW265808.1|CW265808 104_735_11232086_116_35272_059 Sorgh... 72 1e-010
gb|BZ338416.1|BZ338416 ia95b05.g1 WGS-SbicolorF (JM107 adap... 68 2e-009
gb|CW099261.1|CW099261 104_466_11003456_148_34379_030 Sorgh... 68 2e-009
gb|BG357980.1|BG357980 OV2_32_F10.b1_A002 Ovary 2 (OV2) Sor... 68 2e-009
gb|CD224071.1|CD224071 CCC1_31_F12.g1_A007 Callus culture/c... 68 2e-009
gb|CD225333.1|CD225333 CCC1_39_B05.g1_A007 Callus culture/c... 68 2e-009
gb|CF433083.1|CF433083 NIT1_20_G04.g1_A002 Nitrogen-deficie... 68 2e-009
gb|DN551929.1|DN551929 pSPR-RT-MR-H2_H03_C297 pSPR Sorghum ... 68 2e-009
gb|CW415234.1|CW415234 fsbb001f115d24f0 Sorghum methylation... 66 9e-009
gb|AW746071.1|AW746071 WS1_39_E06.b1_A002 Water-stressed 1 ... 66 9e-009
gb|BG103891.1|BG103891 RHIZ2_38_H09.b1_A003 Rhizome2 (RHIZ2... 66 9e-009
gb|BG104113.1|BG104113 RHIZ2_40_F09.b1_A003 Rhizome2 (RHIZ2... 66 9e-009
gb|CD209450.1|CD209450 HS1_42_F03.g1_A012 Heat-shocked seed... 66 9e-009
gb|CD213102.1|CD213102 HS1_28_F05.g1_A012 Heat-shocked seed... 66 9e-009
gb|CF434357.1|CF434357 NIT1_29_B06.g1_A002 Nitrogen-deficie... 66 9e-009
gb|CX621364.1|CX621364 GABR1_57_E08.g1_A002 GA- or brassino... 66 9e-009
gb|CW171851.1|CW171851 104_582_11155960_148_36531_052 Sorgh... 60 6e-007
gb|CW045923.1|CW045923 104_282_10509856_114_30231 Sorghum m... 54 3e-005
gb|CW105746.1|CW105746 104_475_11013040_116_34455_062 Sorgh... 48 0.002
gb|CW100228.1|CW100228 104_467_11003986_148_34387_039 Sorgh... 46 0.008
gb|CW481847.1|CW481847 fsbb001f241k08k0 Sorghum methylation... 46 0.008
gb|BH245279.1|BH245279 pSB0142 S. bicolor BTx623 PstI-diges... 44 0.033
gb|BZ338415.1|BZ338415 ia95b05.b1 WGS-SbicolorF (JM107 adap... 44 0.033
gb|CL147590.1|CL147590 pSB0142 Sorghum propinquum RFLP prob... 44 0.033
gb|CW030388.1|CW030388 104_258_10500213_116_30404 Sorghum m... 44 0.033
gb|CW033588.1|CW033588 104_263_10502043_114_30359 Sorghum m... 44 0.033
gb|CW083674.1|CW083674 104_426_10945315_114_32374_080 Sorgh... 44 0.033
gb|CW138437.1|CW138437 104_528_11134696_116_34891_062 Sorgh... 44 0.033
gb|CW138438.1|CW138438 104_528_11134696_148_34895_062 Sorgh... 44 0.033
gb|CW171850.1|CW171850 104_582_11155960_116_36532_052 Sorgh... 44 0.033
gb|CW260636.1|CW260636 104_727_11229072_148_35202_090 Sorgh... 44 0.033
gb|CW289912.1|CW289912 104_769_11412727_148_35557_032 Sorgh... 44 0.033
gb|BG357659.1|BG357659 OV2_32_F10.g1_A002 Ovary 2 (OV2) Sor... 44 0.033
gb|CD223961.1|CD223961 CCC1_31_F12.b1_A007 Callus culture/c... 44 0.033
gb|AY503215.1| Sorghum bicolor clone 0142-BTx3197 RFLP prob... 44 0.033
gb|AY503216.1| Sorghum bicolor clone 0142-RTx430 RFLP probe... 44 0.033
gb|AY503217.1| Sorghum bicolor clone 0142-102069 RFLP probe... 44 0.033
gb|AY503218.1| Sorghum bicolor clone 0142-152702 RFLP probe... 44 0.033
gb|AY503219.1| Sorghum bicolor clone 0142-195684a RFLP prob... 44 0.033
gb|AY503221.1| Sorghum arundinaceum clone 0142-225905 RFLP ... 44 0.033
gb|AY503222.1| Sorghum bicolor clone 0142-22913 RFLP probe ... 44 0.033
gb|AY503223.1| Sorghum bicolor clone 0142-246712 RFLP probe... 44 0.033
gb|AY503224.1| Sorghum bicolor clone 0142-257595 RFLP probe... 44 0.033
gb|AY503225.1| Sorghum bicolor clone 0142-267380 RFLP probe... 44 0.033
gb|AY503226.1| Sorghum bicolor clone 0142-50875 RFLP probe ... 44 0.033
gb|AY503227.1| Sorghum bicolor clone 0142-51030 RFLP probe ... 44 0.033
gb|AY503228.1| Sorghum bicolor clone 0142-514605 RFLP probe... 44 0.033
gb|AY503229.1| Sorghum bicolor clone 0142-56003 RFLP probe ... 44 0.033
gb|AY503230.1| Sorghum bicolor clone 0142-56174 RFLP probe ... 44 0.033
gb|AY503231.1| Sorghum bicolor clone 0142-77034 RFLP probe ... 44 0.033
gb|AY503232.1| Sorghum bicolor clone 0142-82459 RFLP probe ... 44 0.033
gb|AY503233.1| Sorghum bicolor clone 0142-92381 RFLP probe ... 44 0.033
gb|AY503234.1| Sorghum arundinaceum clone 0142-LWA4 RFLP pr... 44 0.033
gb|AY503235.1| Sorghum arundinaceum clone 0142-LWA8 RFLP pr... 44 0.033
gb|AY503236.1| Sorghum bicolor clone 0142-RTx406 RFLP probe... 44 0.033
gb|AY503237.1| Sorghum bicolor clone 0142-SC0033 RFLP probe... 44 0.033
gb|AY503238.1| Sorghum bicolor clone 0142-SC0155 RFLP probe... 44 0.033
gb|AY503239.1| Sorghum bicolor clone 0142-SC0326 RFLP probe... 44 0.033
gb|AY503240.1| Sorghum bicolor clone 0142-SC0599 RFLP probe... 44 0.033
gb|AY503241.1| Sorghum bicolor clone 0142-SC0706 RFLP probe... 44 0.033
gb|AW563889.1|AW563889 LG1_272_C12.b1_A002 Light Grown 1 (L... 42 0.13
gb|CN136135.1|CN136135 OX1_41_B03.b1_A002 Oxidatively-stres... 42 0.13
gb|CN136213.1|CN136213 OX1_41_B03.g1_A002 Oxidatively-stres... 42 0.13
>gb|CD213481.1|CD213481 HS1_41_A12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_41_A12_A012 3', mRNA sequence
Length = 750
Score = 486 bits (245), Expect = e-135
Identities = 367/406 (90%), Gaps = 15/406 (3%)
Strand = Plus / Plus
Query: 897 tactaggtacaccgaatgagcagagttggccaggagtcagttgtttgcctgacttcaaga 956
||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 351 tactaggtacaccaaatgaacaaagttggccaggagtcagttgtttgcctgacttcaaga 410
Query: 957 cagctttccccaggtggcaagctcaggacctggcaacagtagtcccaaatcttgaccctg 1016
| |||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct: 411 ctgctttccccaggtggcaagctcaggacctggcaacaattgtcccaaatcttgaacctg 470
Query: 1017 ctgggttggaccttctctctaaaatgcttcgatacgagccaagcaaaagaatcacagcga 1076
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 471 ctggtttggaccttctctcaaaaatgcttcgatacgagccaagcaaaagaatcacagcta 530
Query: 1077 ggcaagcacttgagcatgagtacttcaaggaccttgaagtggtacagtgacctgctaaat 1136
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 531 ggcaagcacttgagcatgagtacttcaaggaccttgagatggtacagtgacctgctaaat 590
Query: 1137 gtgcttgacgttgcattgacatttgtatgagctga---------gtcgctcattcctttt 1187
|||||||||||||||||| || ||||||||||||| |||||||||||| |||
Sbjct: 591 gtgcttgacgttgcattggcaattgtatgagctgagtctgctctgtcgctcattcc-ttt 649
Query: 1188 tatgaacgcctgtactcttctcattctctccctgcatttttgtcattcagctggatattt 1247
| ||||||||||||| ||||||||||| || |||||||||||||| ||||||||||
Sbjct: 650 tgtgaacgcctgtac---tctcattctct--ctacatttttgtcattcgactggatattt 704
Query: 1248 cgaatctggtgtgttttgagatgtattaaagaacgtcaaatagatt 1293
||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct: 705 taaatctggtgtgttttgagatgtattaaggaatttcaagtagatt 750
Score = 432 bits (218), Expect = e-119
Identities = 251/262 (95%)
Strand = Plus / Plus
Query: 633 agaacttattgatagatcggcgcactaatgcactgaagcttgcagactttggtttagcca 692
|||||||||||||||||||||| |||||| ||||||||||||| |||||||||||| |||
Sbjct: 1 agaacttattgatagatcggcgtactaatacactgaagcttgctgactttggtttatcca 60
Query: 693 gggcatttggaattcctgtccgtacatttactcatgaggtagtgacattatggtacagag 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gggcatttggaattcctgtccgtacatttactcatgaggtagtgacattatggtacagag 120
Query: 753 ctccagaaattctgcttggagcgaggcagtattccacaccagttgatgtgtggtctgtgg 812
|||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct: 121 ctccagaaattctgcttggagcgaaacagtattcaacaccagttgatgtatggtctgtgg 180
Query: 813 gctgtatctttgcggaaatggtgaaccaaaagccactattccctggcgattctgagatcg 872
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 181 gctgtatctttgctgaaatggtgaaccaaaagccactattccctggtgattctgagatcg 240
Query: 873 acgaactttttaagatattcag 894
||||||| ||||||||||||||
Sbjct: 241 acgaactgtttaagatattcag 262
>gb|BZ337767.1|BZ337767 ia90h05.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia90h05 5', DNA sequence
Length = 477
Score = 268 bits (135), Expect = 1e-069
Identities = 159/167 (95%)
Strand = Plus / Minus
Query: 729 aggtagtgacattatggtacagagctccagaaattctgcttggagcgaggcagtattcca 788
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 459 aggtagtgacattatggtacagagctccagaaattctgcttggagcgaaacagtattcaa 400
Query: 789 caccagttgatgtgtggtctgtgggctgtatctttgcggaaatggtgaaccaaaagccac 848
| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 399 cgccagttgatgtatggtctgtgggctgtatctttgctgaaatggtgaaccaaaagccac 340
Query: 849 tattccctggcgattctgagatcgacgaactttttaagatattcagg 895
|||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 339 tattccctggtgattctgagatcgacgaactgtttaagatattcagg 293
Score = 141 bits (71), Expect = 2e-031
Identities = 83/87 (95%)
Strand = Plus / Minus
Query: 897 tactaggtacaccgaatgagcagagttggccaggagtcagttgtttgcctgacttcaaga 956
||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactaggtacaccaaatgaacaaagttggccaggagtcagttgtttgcctgacttcaaga 142
Query: 957 cagctttccccaggtggcaagctcagg 983
| |||||||||||||||||||||||||
Sbjct: 141 ctgctttccccaggtggcaagctcagg 115
>gb|BE360049.1|BE360049 DG1_61_E06.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 481
Score = 254 bits (128), Expect = 2e-065
Identities = 242/280 (86%)
Strand = Plus / Plus
Query: 242 atggagcagtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaag 301
||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 62 atggaccagtacgagaagacggagaagatcggggaaggcacgtacggggtggtgtacaag 121
Query: 302 gcgctggacaaggccaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggag 361
| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ggcaaggaccgccacaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggag 181
Query: 362 gacgagggcgtcccgtccaccgccatccgcgagatctctctcctcaaggagatgaaccac 421
||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct: 182 gacgaaggcgtcccttccaccgccatccgcgagatctcactcctcaaggagatgcagcac 241
Query: 422 ggcaacatcgtcagattacatgatgttgtccacagcgagaagcgcatataccttgtcttc 481
||||||||||||| | || || || || |||| ||| ||| |||| ||||| |||||
Sbjct: 242 cgcaacatcgtcaggctgcaagacgtggtgcacaacgacaagtgcatctacctcatcttc 301
Query: 482 gagtacctggatctggacctcaagaagttcatggactcct 521
|||||||| || || ||||| |||||| |||||||||||
Sbjct: 302 gagtacctcgacctcgacctgaagaagcacatggactcct 341
>gb|CF484192.1|CF484192 POL1_3_F02.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_3_F02_A002 5', mRNA sequence
Length = 626
Score = 254 bits (128), Expect = 2e-065
Identities = 242/280 (86%)
Strand = Plus / Plus
Query: 242 atggagcagtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaag 301
||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 175 atggaccagtacgagaagacggagaagatcggggaaggcacgtacggggtggtgtacaag 234
Query: 302 gcgctggacaaggccaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggag 361
| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ggcaaggaccgccacaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggag 294
Query: 362 gacgagggcgtcccgtccaccgccatccgcgagatctctctcctcaaggagatgaaccac 421
||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct: 295 gacgaaggcgtcccttccaccgccatccgcgagatctcactcctcaaggagatgcagcac 354
Query: 422 ggcaacatcgtcagattacatgatgttgtccacagcgagaagcgcatataccttgtcttc 481
||||||||||||| | || || || || |||| ||| ||| |||| ||||| |||||
Sbjct: 355 cgcaacatcgtcaggctgcaggacgtggtgcacaacgacaagtgcatctacctcatcttc 414
Query: 482 gagtacctggatctggacctcaagaagttcatggactcct 521
|||||||| || || ||||| |||||| |||||||||||
Sbjct: 415 gagtacctcgacctcgacctgaagaagcacatggactcct 454
>gb|CF484842.1|CF484842 POL1_27_G06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_27_G06_A002 5', mRNA sequence
Length = 572
Score = 254 bits (128), Expect = 2e-065
Identities = 242/280 (86%)
Strand = Plus / Plus
Query: 242 atggagcagtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaag 301
||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 177 atggaccagtacgagaagacggagaagatcggggaaggcacgtacggggtggtgtacaag 236
Query: 302 gcgctggacaaggccaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggag 361
| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ggcaaggaccgccacaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggag 296
Query: 362 gacgagggcgtcccgtccaccgccatccgcgagatctctctcctcaaggagatgaaccac 421
||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct: 297 gacgaaggcgtcccttccaccgccatccgcgagatctcactcctcaaggagatgcagcac 356
Query: 422 ggcaacatcgtcagattacatgatgttgtccacagcgagaagcgcatataccttgtcttc 481
||||||||||||| | || || || || |||| ||| ||| |||| ||||| |||||
Sbjct: 357 cgcaacatcgtcaggctgcaggacgtggtgcacaacgacaagtgcatctacctcatcttc 416
Query: 482 gagtacctggatctggacctcaagaagttcatggactcct 521
|||||||| || || ||||| |||||| |||||||||||
Sbjct: 417 gagtacctcgacctcgacctgaagaagcacatggactcct 456
>gb|CF484845.1|CF484845 POL1_27_G09.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_27_G09_A002 5', mRNA sequence
Length = 625
Score = 254 bits (128), Expect = 2e-065
Identities = 242/280 (86%)
Strand = Plus / Plus
Query: 242 atggagcagtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaag 301
||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 182 atggaccagtacgagaagacggagaagatcggggaaggcacgtacggggtggtgtacaag 241
Query: 302 gcgctggacaaggccaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggag 361
| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ggcaaggaccgccacaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggag 301
Query: 362 gacgagggcgtcccgtccaccgccatccgcgagatctctctcctcaaggagatgaaccac 421
||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct: 302 gacgaaggcgtcccttccaccgccatccgcgagatctcactcctcaaggagatgcagcac 361
Query: 422 ggcaacatcgtcagattacatgatgttgtccacagcgagaagcgcatataccttgtcttc 481
||||||||||||| | || || || || |||| ||| ||| |||| ||||| |||||
Sbjct: 362 cgcaacatcgtcaggctgcaggacgtggtgcacaacgacaagtgcatctacctcatcttc 421
Query: 482 gagtacctggatctggacctcaagaagttcatggactcct 521
|||||||| || || ||||| |||||| |||||||||||
Sbjct: 422 gagtacctcgacctcgacctgaagaagcacatggactcct 461
>gb|CF487727.1|CF487727 POL1_45_C06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_45_C06_A002 5', mRNA sequence
Length = 721
Score = 254 bits (128), Expect = 2e-065
Identities = 242/280 (86%)
Strand = Plus / Plus
Query: 242 atggagcagtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaag 301
||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 173 atggaccagtacgagaagacggagaagatcggggaaggcacgtacggggtggtgtacaag 232
Query: 302 gcgctggacaaggccaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggag 361
| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ggcaaggaccgccacaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggag 292
Query: 362 gacgagggcgtcccgtccaccgccatccgcgagatctctctcctcaaggagatgaaccac 421
||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct: 293 gacgaaggcgtcccttccaccgccatccgcgagatctcactcctcaaggagatgcagcac 352
Query: 422 ggcaacatcgtcagattacatgatgttgtccacagcgagaagcgcatataccttgtcttc 481
||||||||||||| | || || || || |||| ||| ||| |||| ||||| |||||
Sbjct: 353 cgcaacatcgtcaggctgcaggacgtggtgcacaacgacaagtgcatctacctcatcttc 412
Query: 482 gagtacctggatctggacctcaagaagttcatggactcct 521
|||||||| || || ||||| |||||| |||||||||||
Sbjct: 413 gagtacctcgacctcgacctgaagaagcacatggactcct 452
Score = 79.8 bits (40), Expect = 6e-013
Identities = 103/124 (83%)
Strand = Plus / Plus
Query: 666 tgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtacatttactc 725
||||||| || |||||||| || || ||||||||||| || |||||||| || || ||||
Sbjct: 594 tgaagctcgccgactttggattggcgagggcatttggcatccctgtccggactttcactc 653
Query: 726 atgaggtagtgacattatggtacagagctccagaaattctgcttggagcgaggcagtatt 785
| ||||| |||||| | ||||| ||||| || |||||||| ||||| || ||||| ||||
Sbjct: 654 acgaggtggtgacactctggtatagagcaccggaaattcttcttggtgcaaggcattatt 713
Query: 786 ccac 789
||||
Sbjct: 714 ccac 717
>gb|CF488282.1|CF488282 POL1_48_H01.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_48_H01_A002 5', mRNA sequence
Length = 695
Score = 254 bits (128), Expect = 2e-065
Identities = 242/280 (86%)
Strand = Plus / Plus
Query: 242 atggagcagtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaag 301
||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 169 atggaccagtacgagaagacggagaagatcggggaaggcacgtacggggtggtgtacaag 228
Query: 302 gcgctggacaaggccaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggag 361
| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 ggcaaggaccgccacaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggag 288
Query: 362 gacgagggcgtcccgtccaccgccatccgcgagatctctctcctcaaggagatgaaccac 421
||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct: 289 gacgaaggcgtcccttccaccgccatccgcgagatctcactcctcaaggagatgcagcac 348
Query: 422 ggcaacatcgtcagattacatgatgttgtccacagcgagaagcgcatataccttgtcttc 481
||||||||||||| | || || || || |||| ||| ||| |||| ||||| |||||
Sbjct: 349 cgcaacatcgtcaggctgcaggacgtggtgcacaacgacaagtgcatctacctcatcttc 408
Query: 482 gagtacctggatctggacctcaagaagttcatggactcct 521
|||||||| || || ||||| |||||| |||||||||||
Sbjct: 409 gagtacctcgacctcgacctgaagaagcacatggactcct 448
Score = 67.9 bits (34), Expect = 2e-009
Identities = 88/106 (83%)
Strand = Plus / Plus
Query: 666 tgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtacatttactc 725
||||||| || |||||||| || || ||||||||||| || |||||||| || || ||||
Sbjct: 590 tgaagctcgccgactttggattggcgagggcatttggcatccctgtccggactttcactc 649
Query: 726 atgaggtagtgacattatggtacagagctccagaaattctgcttgg 771
| ||||| |||||| | ||||| ||||| || |||||||| |||||
Sbjct: 650 acgaggtggtgacactctggtatagagcaccggaaattcttcttgg 695
>gb|CF480880.1|CF480880 POL1_68_C06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_68_C06_A002 5', mRNA sequence
Length = 741
Score = 246 bits (124), Expect = 5e-063
Identities = 241/280 (86%)
Strand = Plus / Plus
Query: 242 atggagcagtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaag 301
||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 161 atggaccagtacgagaagacggagaagatcggggaaggcacgtacggggtggtgtacaag 220
Query: 302 gcgctggacaaggccaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggag 361
| |||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 221 ggcaaggaccgccacaccaacgagacgatcgcgctcaagaagacccgcctcgagcaggag 280
Query: 362 gacgagggcgtcccgtccaccgccatccgcgagatctctctcctcaaggagatgaaccac 421
||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct: 281 gacgaaggcgtcccttccaccgccatccgcgagatctcactcctcaaggagatgcagcac 340
Query: 422 ggcaacatcgtcagattacatgatgttgtccacagcgagaagcgcatataccttgtcttc 481
||||||||||||| | || || || || |||| ||| ||| |||| ||||| |||||
Sbjct: 341 cgcaacatcgtcaggctgcaggacgtggtgcacaacgacaagtgcatctacctcatcttc 400
Query: 482 gagtacctggatctggacctcaagaagttcatggactcct 521
|||||||| || || ||||| |||||| |||||||||||
Sbjct: 401 gagtacctcgacctcgacctgaagaagcacatggactcct 440
Score = 99.6 bits (50), Expect = 7e-019
Identities = 119/142 (83%)
Strand = Plus / Plus
Query: 666 tgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtacatttactc 725
||||||| || |||||||| || || ||||||||||| || |||||||| || || ||||
Sbjct: 582 tgaagctcgccgactttggattggcgagggcatttggcatccctgtccggactttcactc 641
Query: 726 atgaggtagtgacattatggtacagagctccagaaattctgcttggagcgaggcagtatt 785
| ||||| |||||| | ||||| ||||| || |||||||| ||||| || ||||| ||||
Sbjct: 642 acgaggtggtgacactctggtatagagcaccggaaattcttcttggtgcaaggcattatt 701
Query: 786 ccacaccagttgatgtgtggtc 807
|||| || ||||||||||||||
Sbjct: 702 ccacccctgttgatgtgtggtc 723
>gb|CF481421.1|CF481421 POL1_71_H06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_71_H06_A002 5', mRNA sequence
Length = 644
Score = 246 bits (124), Expect = 5e-063
Identities = 241/280 (86%)
Strand = Plus / Plus
Query: 242 atggagcagtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaag 301
||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 161 atggaccagtacgagaagacggagaagatcggggaaggcacgtacggggtggtgtacaag 220
Query: 302 gcgctggacaaggccaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggag 361
| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ggcaaggaccgccacaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggaa 280
Query: 362 gacgagggcgtcccgtccaccgccatccgcgagatctctctcctcaaggagatgaaccac 421
||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct: 281 gacgaaggcgtcccttccaccgccatccgcgagatctcactcctcaaggagatgcagcac 340
Query: 422 ggcaacatcgtcagattacatgatgttgtccacagcgagaagcgcatataccttgtcttc 481
||||||||||||| | || || || || |||| ||| ||| |||| ||||| |||||
Sbjct: 341 cgcaacatcgtcaggctgcaggacgtggtgcacaacgacaagtgcatctacctcatcttc 400
Query: 482 gagtacctggatctggacctcaagaagttcatggactcct 521
|||||||| || || ||||| |||||| |||||||||||
Sbjct: 401 gagtacctcgacctcgacctgaagaagcacatggactcct 440
Score = 42.1 bits (21), Expect = 0.13
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 666 tgaagcttgcagactttggtttagccagggcatttggaattcctgtccg 714
||||||| || |||||||| || || ||||||||||| || ||||||||
Sbjct: 582 tgaagctcgccgactttggattggcgagggcatttggcatccctgtccg 630
>gb|CF479950.1|CF479950 POL1_62_G06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_62_G06_A002 5', mRNA sequence
Length = 645
Score = 234 bits (118), Expect = 2e-059
Identities = 175/194 (90%)
Strand = Plus / Plus
Query: 242 atggagcagtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaag 301
||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 160 atggaccagtacgagaagacggagaagatcggggaaggcacgtacggggtggtgtacaag 219
Query: 302 gcgctggacaaggccaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggag 361
| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ggcaaggaccgccacaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggag 279
Query: 362 gacgagggcgtcccgtccaccgccatccgcgagatctctctcctcaaggagatgaaccac 421
||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct: 280 gacgaaggcgtcccttccaccgccatccgcgagatctcactcctcaaggagatgcagcac 339
Query: 422 ggcaacatcgtcag 435
|||||||||||||
Sbjct: 340 cgcaacatcgtcag 353
Score = 42.1 bits (21), Expect = 0.13
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 666 tgaagcttgcagactttggtttagccagggcatttggaattcctgtccg 714
||||||| || |||||||| || || ||||||||||| || ||||||||
Sbjct: 589 tgaagctcgccgactttggattggcgagggcatttggcatccctgtccg 637
>gb|CW209518.1|CW209518 104_639_11189291_116_37080_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189291, DNA
sequence
Length = 702
Score = 232 bits (117), Expect = 7e-059
Identities = 171/189 (90%)
Strand = Plus / Plus
Query: 247 gcagtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggcgct 306
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 179 gcagtacgagaagacggagaagatcggggaaggcacgtacggggtggtgtacaagggcaa 238
Query: 307 ggacaaggccaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggaggacga 366
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ggaccgccacaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggaggacga 298
Query: 367 gggcgtcccgtccaccgccatccgcgagatctctctcctcaaggagatgaaccacggcaa 426
|||||||| ||||||||||||||||||||||| ||||||||||||||| | ||| ||||
Sbjct: 299 aggcgtcccttccaccgccatccgcgagatctcactcctcaaggagatgcagcaccgcaa 358
Query: 427 catcgtcag 435
|||||||||
Sbjct: 359 catcgtcag 367
Score = 44.1 bits (22), Expect = 0.033
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 452 cacagcgagaagcgcatataccttgtcttcgagtacctggatctggacctcaagaagttc 511
|||| ||| ||| |||| ||||| ||||||||||||| || || ||||| |||||| |
Sbjct: 521 cacaacgacaagtgcatctacctcatcttcgagtacctcgacctcgacctgaagaagcac 580
Query: 512 atggactcct 521
||||||||||
Sbjct: 581 atggactcct 590
>gb|CW209519.1|CW209519 104_639_11189291_148_37081_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189291, DNA
sequence
Length = 666
Score = 232 bits (117), Expect = 7e-059
Identities = 171/189 (90%)
Strand = Plus / Minus
Query: 247 gcagtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggcgct 306
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 604 gcagtacgagaagacggagaagatcggggaaggcacgtacggggtggtgtacaagggcaa 545
Query: 307 ggacaaggccaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggaggacga 366
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ggaccgccacaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggaggacga 485
Query: 367 gggcgtcccgtccaccgccatccgcgagatctctctcctcaaggagatgaaccacggcaa 426
|||||||| ||||||||||||||||||||||| ||||||||||||||| | ||| ||||
Sbjct: 484 aggcgtcccttccaccgccatccgcgagatctcactcctcaaggagatgcagcaccgcaa 425
Query: 427 catcgtcag 435
|||||||||
Sbjct: 424 catcgtcag 416
Score = 44.1 bits (22), Expect = 0.033
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 452 cacagcgagaagcgcatataccttgtcttcgagtacctggatctggacctcaagaagttc 511
|||| ||| ||| |||| ||||| ||||||||||||| || || ||||| |||||| |
Sbjct: 262 cacaacgacaagtgcatctacctcatcttcgagtacctcgacctcgacctgaagaagcac 203
Query: 512 atggactcct 521
||||||||||
Sbjct: 202 atggactcct 193
>gb|CF485947.1|CF485947 POL1_34_F03.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_34_F03_A002 5', mRNA sequence
Length = 610
Score = 220 bits (111), Expect = 3e-055
Identities = 168/187 (89%)
Strand = Plus / Plus
Query: 242 atggagcagtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaag 301
||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 176 atggaccagtacgagaagacggagaagatcggggaaggcacgtacggggtggtgtacaag 235
Query: 302 gcgctggacaaggccaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggag 361
| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ggcaaggaccgccacaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggag 295
Query: 362 gacgagggcgtcccgtccaccgccatccgcgagatctctctcctcaaggagatgaaccac 421
||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct: 296 gacgaaggcgtcccttccaccgccatccgcgagatctcactcctcaaggagatgcagcac 355
Query: 422 ggcaaca 428
||||||
Sbjct: 356 cgcaaca 362
Score = 147 bits (74), Expect = 3e-033
Identities = 190/229 (82%)
Strand = Plus / Plus
Query: 666 tgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtacatttactc 725
||||||| || |||||||| || || ||||||||||| || |||||||| || || ||||
Sbjct: 369 tgaagctcgccgactttggattggcgagggcatttggcatccctgtccggactttcactc 428
Query: 726 atgaggtagtgacattatggtacagagctccagaaattctgcttggagcgaggcagtatt 785
| ||||| |||||| | ||||| ||||| || |||||||| ||||| || ||||| ||||
Sbjct: 429 acgaggtggtgacactctggtatagagcaccggaaattcttcttggtgcaaggcattatt 488
Query: 786 ccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggtgaaccaaaagc 845
|||| || |||||||||||||| || || || || ||||| |||||||||||||| ||||
Sbjct: 489 ccacccctgttgatgtgtggtcagttggttgcatttttgctgaaatggtgaaccanaagc 548
Query: 846 cactattccctggcgattctgagatcgacgaactttttaagatattcag 894
|||| || ||||| || |||||||| || || || |||||||| |||||
Sbjct: 549 cactttttcctggtgactctgagattgatgagctgtttaagattttcag 597
>gb|CF482868.1|CF482868 POL1_9_D11.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_9_D11_A002 5', mRNA sequence
Length = 498
Score = 214 bits (108), Expect = 2e-053
Identities = 222/260 (85%)
Strand = Plus / Plus
Query: 262 ggagaagatcggggagggcacgtacggggtggtgtacaaggcgctggacaaggccaccaa 321
||||||||||||||| ||||||||||||||||||||||||| |||| |||| |
Sbjct: 182 ggagaagatcggggaaggcacgtacggggtggtgtacaagggcgaggaccgccacaccga 241
Query: 322 cgagacgatcgcgctcaagaagatccgcctcgagcaggaggacgagggcgtcccgtccac 381
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 242 cgagacgatcgcgctcaagaagatccgcctcgagcaggaggacgaaggcgtcccttccac 301
Query: 382 cgccatccgcgagatctctctcctcaaggagatgaaccacggcaacatcgtcagattaca 441
|||||||||||||||||| ||||||||||||||| | ||| ||||||||| ||| | ||
Sbjct: 302 cgccatccgcgagatctcactcctcaaggagatgcagcaccgcaacatcgacaggctgca 361
Query: 442 tgatgttgtccacagcgagaagcgcatataccttgtcttcgagtacctggatctggacct 501
|| || || ||| ||| ||| |||| ||||| ||||||||||||| || || |||||
Sbjct: 362 ggacgtggtgcacgacgacaagtgcatctacctcatcttcgagtacctcgacctcgacct 421
Query: 502 caagaagttcatggactcct 521
|||||| |||||||||||
Sbjct: 422 gaagaagcgcatggactcct 441
>gb|CF486932.1|CF486932 POL1_40_E12.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_40_E12_A002 5', mRNA sequence
Length = 669
Score = 210 bits (106), Expect = 2e-052
Identities = 225/262 (85%), Gaps = 2/262 (0%)
Strand = Plus / Plus
Query: 262 ggagaagatcggg-gagggcacgtacgggg-tggtgtacaaggcgctggacaaggccacc 319
||||||||||||| || ||||||||||||| |||||||||||| |||| ||||
Sbjct: 107 ggagaagatcgggngaaggcacgtacgggggtggtgtacaagggcaaggaccgccacacc 166
Query: 320 aacgagacgatcgcgctcaagaagatccgcctcgagcaggaggacgagggcgtcccgtcc 379
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 167 aacgagacgatcgcgctcaagaagatccgcctcgagcaggaggacgaaggcgtcccttcc 226
Query: 380 accgccatccgcgagatctctctcctcaaggagatgaaccacggcaacatcgtcagatta 439
|||||||||||||||||||| ||||||||||||||| | ||| ||||||||||||| |
Sbjct: 227 accgccatccgcgagatctcactcctcaaggagatgcagcaccgcaacatcgtcaggctg 286
Query: 440 catgatgttgtccacagcgagaagcgcatataccttgtcttcgagtacctggatctggac 499
|| || || || |||| ||| ||| |||| ||||| ||||||||||||| || || |||
Sbjct: 287 caggacgtggtgcacaacgacaagtgcatctacctcatcttcgagtacctcgacctcgac 346
Query: 500 ctcaagaagttcatggactcct 521
|| |||||| |||||||||||
Sbjct: 347 ctgaagaagcacatggactcct 368
Score = 99.6 bits (50), Expect = 7e-019
Identities = 119/142 (83%)
Strand = Plus / Plus
Query: 666 tgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtacatttactc 725
||||||| || |||||||| || || ||||||||||| || |||||||| || || ||||
Sbjct: 510 tgaagctcgccgactttggattggcgagggcatttggcatccctgtccggactttcactc 569
Query: 726 atgaggtagtgacattatggtacagagctccagaaattctgcttggagcgaggcagtatt 785
| ||||| |||||| | ||||| ||||| || |||||||| ||||| || ||||| ||||
Sbjct: 570 acgaggtggtgacactctggtatagagcaccggaaattcttcttggtgcaaggcattatt 629
Query: 786 ccacaccagttgatgtgtggtc 807
|||| || ||||||||||||||
Sbjct: 630 ccacccctgttgatgtgtggtc 651
>gb|CL150647.1|CL150647 104_332_10778681_116_31358_233 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778681, DNA
sequence
Length = 526
Score = 196 bits (99), Expect = 4e-048
Identities = 120/127 (94%)
Strand = Plus / Minus
Query: 247 gcagtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggcgct 306
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 127 gcagtacgagaagcaggagaagatcggggagggcacctacggggtggtgtacaaggcggt 68
Query: 307 ggacaaggccaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggaggacga 366
| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 67 gaacaaggtcaccaacgagacgatcgcgctcaagaagatccgactcgagcaggaggacga 8
Query: 367 gggcgtc 373
|||||||
Sbjct: 7 gggcgtc 1
Score = 83.8 bits (42), Expect = 4e-014
Identities = 65/73 (89%)
Strand = Plus / Minus
Query: 74 ggcagctgcagcttcaccagccgccgcctttccccgtctcctctgcctctcctcctaatc 133
||||||||||||||| | |||||||||||||||| ||||| | |||||||||||||||
Sbjct: 388 ggcagctgcagcttcgnccgccgccgcctttccccacctcctgtccctctcctcctaatc 329
Query: 134 cccttccacttct 146
|||||||| ||||
Sbjct: 328 cccttccatttct 316
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 176 cgcttcctcgccacttagttcgttccgcacccgcagccg 214
||||||||||||| || |||||||||||||||||||||
Sbjct: 300 cgcttcctcgccagttgcttcgttccgcacccgcagccg 262
>gb|CF487647.1|CF487647 POL1_45_C06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_45_C06_A002 3', mRNA sequence
Length = 616
Score = 145 bits (73), Expect = 1e-032
Identities = 190/229 (82%)
Strand = Plus / Plus
Query: 666 tgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtacatttactc 725
||||||| || |||||||| || || ||||||||||| || |||||||| || || ||||
Sbjct: 17 tgaagctcgccgactttggattggcgagggcatttggcatccctgtccggactttcactc 76
Query: 726 atgaggtagtgacattatggtacagagctccagaaattctgcttggagcgaggcagtatt 785
| ||||| |||||| | ||||| ||||| || |||||||| ||||| || ||||| ||||
Sbjct: 77 acgaggtggtgacactctggtatagagcaccggaaattcttcttggtgcaaggcattatt 136
Query: 786 ccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggtgaaccaaaagc 845
|||| || |||||||||||||| || || || || ||||| |||||||||||||| ||||
Sbjct: 137 ccacccctgttgatgtgtggtcagttggttgcatttttgctgaaatggtgaaccagaagc 196
Query: 846 cactattccctggcgattctgagatcgacgaactttttaagatattcag 894
|||| || ||||| || |||||||| || || || |||||||| |||||
Sbjct: 197 cactttttcctggtgactctgagattgatgagctgtttaagattttcag 245
>gb|CF484760.1|CF484760 POL1_27_G06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_27_G06_A002 3', mRNA sequence
Length = 598
Score = 139 bits (70), Expect = 8e-031
Identities = 181/218 (83%)
Strand = Plus / Plus
Query: 677 gactttggtttagccagggcatttggaattcctgtccgtacatttactcatgaggtagtg 736
|||||||| || || ||||||||||| || |||||||| || || ||||| ||||| |||
Sbjct: 2 gactttggattggcgagggcatttggcatccctgtccggactttcactcacgaggtggtg 61
Query: 737 acattatggtacagagctccagaaattctgcttggagcgaggcagtattccacaccagtt 796
||| | ||||| ||||| || |||||||| ||||| || ||||| |||||||| || |||
Sbjct: 62 acactctggtatagagcaccggaaattcttcttggtgcaaggcattattccacccctgtt 121
Query: 797 gatgtgtggtctgtgggctgtatctttgcggaaatggtgaaccaaaagccactattccct 856
||||||||||| || || || || ||||| |||||||||||||| |||||||| || |||
Sbjct: 122 gatgtgtggtcagttggttgcatttttgctgaaatggtgaaccagaagccactttttcct 181
Query: 857 ggcgattctgagatcgacgaactttttaagatattcag 894
|| || |||||||| || || || |||||||| |||||
Sbjct: 182 ggtgactctgagattgatgagctgtttaagattttcag 219
>gb|CF484762.1|CF484762 POL1_27_G09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_27_G09_A002 3', mRNA sequence
Length = 712
Score = 139 bits (70), Expect = 8e-031
Identities = 181/218 (83%)
Strand = Plus / Plus
Query: 677 gactttggtttagccagggcatttggaattcctgtccgtacatttactcatgaggtagtg 736
|||||||| || || ||||||||||| || |||||||| || || ||||| ||||| |||
Sbjct: 2 gactttggattggcgagggcatttggcatccctgtccggactttcactcacgaggtggtg 61
Query: 737 acattatggtacagagctccagaaattctgcttggagcgaggcagtattccacaccagtt 796
||| | ||||| ||||| || |||||||| ||||| || ||||| |||||||| || |||
Sbjct: 62 acactctggtatagagcaccggaaattcttcttggtgcaaggcattattccacccctgtt 121
Query: 797 gatgtgtggtctgtgggctgtatctttgcggaaatggtgaaccaaaagccactattccct 856
||||||||||| || || || || ||||| |||||||||||||| |||||||| || |||
Sbjct: 122 gatgtgtggtcagttggttgcatttttgctgaaatggtgaaccagaagccactttttcct 181
Query: 857 ggcgattctgagatcgacgaactttttaagatattcag 894
|| || |||||||| || || || |||||||| |||||
Sbjct: 182 ggtgactctgagattgatgagctgtttaagattttcag 219
>gb|CF486859.1|CF486859 POL1_40_E12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_40_E12_A002 3', mRNA sequence
Length = 592
Score = 139 bits (70), Expect = 8e-031
Identities = 181/218 (83%)
Strand = Plus / Plus
Query: 677 gactttggtttagccagggcatttggaattcctgtccgtacatttactcatgaggtagtg 736
|||||||| || || ||||||||||| || |||||||| || || ||||| ||||| |||
Sbjct: 5 gactttggattggcgagggcatttggcatccctgtccggactttcactcacgaggtggtg 64
Query: 737 acattatggtacagagctccagaaattctgcttggagcgaggcagtattccacaccagtt 796
||| | ||||| ||||| || |||||||| ||||| || ||||| |||||||| || |||
Sbjct: 65 acactctggtatagagcaccggaaattcttcttggtgcaaggcattattccacccctgtt 124
Query: 797 gatgtgtggtctgtgggctgtatctttgcggaaatggtgaaccaaaagccactattccct 856
||||||||||| || || || || ||||| |||||||||||||| |||||||| || |||
Sbjct: 125 gatgtgtggtcagttggttgcatttttgctgaaatggtgaaccagaagccactttttcct 184
Query: 857 ggcgattctgagatcgacgaactttttaagatattcag 894
|| || |||||||| || || || |||||||| |||||
Sbjct: 185 ggtgactctgagattgatgagctgtttaagattttcag 222
>gb|CW045924.1|CW045924 104_282_10509856_115_30226 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509856, DNA
sequence
Length = 526
Score = 127 bits (64), Expect = 3e-027
Identities = 170/204 (83%), Gaps = 16/204 (7%)
Strand = Plus / Minus
Query: 1135 atgtgcttgacgttgcattgacatttgtatgagctgagtc---------gctcattcctt 1185
|||||||||||||||||||| || |||||||||||||||| |||||||||||
Sbjct: 526 atgtgcttgacgttgcattggcaattgtatgagctgagtctgctctgtcgctcattcctt 467
Query: 1186 tttatgaacgcctgtactcttctcattctctccctgcatttttgtcattcagctggatat 1245
| | ||||||||||||||| ||||||||| | |||||||||||||| ||||||||
Sbjct: 466 tgt--gaacgcctgtactct---cattctctc--tacatttttgtcattcgactggatat 414
Query: 1246 ttcgaatctggtgtgttttgagatgtattaaagaacgtcaaatagattaccgccttggtc 1305
|| ||||||||||||||||||||||||||| ||| |||| |||||||| |||| ||||
Sbjct: 413 tttaaatctggtgtgttttgagatgtattaaggaatttcaagtagattactgcctgggtc 354
Query: 1306 tctgtccattgaaagtaaatatcc 1329
||| | |||||| ||||||||||
Sbjct: 353 tctatttattgaatgtaaatatcc 330
>gb|CL150646.1|CL150646 104_332_10778681_114_31357_233 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778681, DNA
sequence
Length = 623
Score = 89.7 bits (45), Expect = 6e-016
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 74 ggcagctgcagcttcaccagccgccgcctttccccgtctcctctgcctctcctcctaatc 133
||||||||||||||| || |||||||||||||||| ||||| | |||||||||||||||
Sbjct: 438 ggcagctgcagcttcgcccgccgccgcctttccccacctcctgtccctctcctcctaatc 497
Query: 134 cccttccacttct 146
|||||||| ||||
Sbjct: 498 cccttccatttct 510
>gb|CF481336.1|CF481336 POL1_71_H06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_71_H06_A002 3', mRNA sequence
Length = 503
Score = 85.7 bits (43), Expect = 1e-014
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 776 aggcagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggtg 835
||||| |||||||| || |||||||||||||| || || || || ||||| |||||||||
Sbjct: 8 aggcattattccacccctgttgatgtgtggtcagttggttgcatttttgctgaaatggtg 67
Query: 836 aaccaaaagccactattccctggcgattctgagatcgacgaactttttaagatattcag 894
||||| |||||||| || ||||| || |||||||| || || || |||||||| |||||
Sbjct: 68 aaccagaagccactttttcctggtgactctgagattgatgagctgtttaagattttcag 126
>gb|CF484115.1|CF484115 POL1_3_F02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_3_F02_A002 3', mRNA sequence
Length = 598
Score = 85.7 bits (43), Expect = 1e-014
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 776 aggcagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggtg 835
||||| |||||||| || |||||||||||||| || || || || ||||| |||||||||
Sbjct: 9 aggcattattccacccctgttgatgtgtggtcagttggttgcatttttgctgaaatggtg 68
Query: 836 aaccaaaagccactattccctggcgattctgagatcgacgaactttttaagatattcag 894
||||| |||||||| || ||||| || |||||||| || || || |||||||| |||||
Sbjct: 69 aaccagaagccactttttcctggtgactctgagattgatgagctgtttaagattttcag 127
>gb|BG487760.1|BG487760 FM1_73_H09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 562
Score = 79.8 bits (40), Expect = 6e-013
Identities = 130/160 (81%)
Strand = Plus / Plus
Query: 249 agtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggcgctgg 308
||||||||||| |||||||| ||||||| || ||||||||| |||||||||||||| ||
Sbjct: 187 agtacgagaagctggagaaggtcggggaagggacgtacgggaaggtgtacaaggcgcagg 246
Query: 309 acaaggccaccaacgagacgatcgcgctcaagaagatccgcctcgagcaggaggacgagg 368
||||||| || || | | ||||| ||||||| |||||||||| ||| || || |
Sbjct: 247 acaaggcgacggggcagctggtggcgctgaagaagacccgcctcgagatggacgaggaag 306
Query: 369 gcgtcccgtccaccgccatccgcgagatctctctcctcaa 408
| ||||| ||||||| ||||||||||||| ||||||||
Sbjct: 307 ggatcccgcccaccgcgctccgcgagatctccctcctcaa 346
>gb|CW154813.1|CW154813 104_557_11145800_116_36358_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11145800, DNA
sequence
Length = 731
Score = 77.8 bits (39), Expect = 2e-012
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 667 gaagcttgcagactttggtttagccagggcatttggaattcctgtccgtacatttactca 726
||||||||||||||| ||||||||||||| ||||| | || |||||||| |||||||||
Sbjct: 235 gaagcttgcagacttcggtttagccaggggatttgtacctcttgtccgtaaatttactca 176
Query: 727 tgaggta 733
|||||||
Sbjct: 175 tgaggta 169
Score = 67.9 bits (34), Expect = 2e-009
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 589 gtactgccattctcatagagttcttcaccgagatttgaaacctcagaacttattgata 646
||||||||||||||| || ||||||| |||||||||||||||| |||| ||||||||
Sbjct: 297 gtactgccattctcaaggatttcttcatcgagatttgaaacctccgaacatattgata 240
>gb|CW166533.1|CW166533 104_575_11153105_116_36837_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153105, DNA
sequence
Length = 624
Score = 77.8 bits (39), Expect = 2e-012
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 249 agtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggcgctgg 308
||||||||||| |||||||| |||| ||||| ||||||||| |||||||||||||| ||
Sbjct: 431 agtacgagaagctggagaaggtcggtgaggggacgtacgggaaggtgtacaaggcgcagg 490
Query: 309 acaaggc 315
|||||||
Sbjct: 491 acaaggc 497
>gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, partial sequence
Length = 268433
Score = 77.8 bits (39), Expect = 2e-012
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 249 agtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggcgctgg 308
||||||||||| |||||||| |||| ||||| ||||||||| |||||||||||||| ||
Sbjct: 174211 agtacgagaagctggagaaggtcggtgaggggacgtacgggaaggtgtacaaggcgcagg 174152
Query: 309 acaaggc 315
|||||||
Sbjct: 174151 acaaggc 174145
>gb|CF480815.1|CF480815 POL1_68_C06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_68_C06_A002 3', mRNA sequence
Length = 645
Score = 73.8 bits (37), Expect = 4e-011
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 794 gttgatgtgtggtctgtgggctgtatctttgcggaaatggtgaaccaaaagccactattc 853
|||||||||||||| || || || || ||||| |||||||||||||| |||||||| ||
Sbjct: 27 gttgatgtgtggtcagttggttgcatttttgctgaaatggtgaaccagaagccacttttt 86
Query: 854 cctggcgattctgagatcgacgaactttttaagatattcag 894
||||| || |||||||| || || || |||||||| |||||
Sbjct: 87 cctggtgactctgagattgatgagctgtttaagattttcag 127
>gb|CF490075.1|CF490075 POL1_62_G06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_62_G06_A002 3', mRNA sequence
Length = 667
Score = 73.8 bits (37), Expect = 4e-011
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 794 gttgatgtgtggtctgtgggctgtatctttgcggaaatggtgaaccaaaagccactattc 853
|||||||||||||| || || || || ||||| |||||||||||||| |||||||| ||
Sbjct: 27 gttgatgtgtggtcagttggttgcatttttgctgaaatggtgaaccagaagccacttttt 86
Query: 854 cctggcgattctgagatcgacgaactttttaagatattcag 894
||||| || |||||||| || || || |||||||| |||||
Sbjct: 87 cctggtgactctgagattgatgagctgtttaagattttcag 127
>gb|CL188188.1|CL188188 104_404_10901424_114_32445_090 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901424, DNA
sequence
Length = 628
Score = 71.9 bits (36), Expect = 1e-010
Identities = 85/101 (84%), Gaps = 4/101 (3%)
Strand = Plus / Plus
Query: 438 tacatgatgttgtccacagcgagaagcgcata----taccttgtcttcgagtacctggat 493
|||||||||||||| ||| |||||||||||| || |||||||| |||||| |||||
Sbjct: 322 tacatgatgttgtctacaacgagaagcgcatgcatctatcttgtcttggagtacatggat 381
Query: 494 ctggacctcaagaagttcatggactcctgcccggagtttgc 534
|||||||| || ||||||||||| | ||||||| ||||||
Sbjct: 382 ctggacctaaacaagttcatggatttttgcccggggtttgc 422
>gb|CL188189.1|CL188189 104_404_10901424_116_32449_090 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901424, DNA
sequence
Length = 603
Score = 71.9 bits (36), Expect = 1e-010
Identities = 85/101 (84%), Gaps = 4/101 (3%)
Strand = Plus / Minus
Query: 438 tacatgatgttgtccacagcgagaagcgcata----taccttgtcttcgagtacctggat 493
|||||||||||||| ||| |||||||||||| || |||||||| |||||| |||||
Sbjct: 521 tacatgatgttgtctacaacgagaagcgcatgcatctatcttgtcttggagtacatggat 462
Query: 494 ctggacctcaagaagttcatggactcctgcccggagtttgc 534
|||||||| || ||||||||||| | ||||||| ||||||
Sbjct: 461 ctggacctaaacaagttcatggatttttgcccggggtttgc 421
>gb|CW265808.1|CW265808 104_735_11232086_116_35272_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232086, DNA
sequence
Length = 655
Score = 71.9 bits (36), Expect = 1e-010
Identities = 85/101 (84%), Gaps = 4/101 (3%)
Strand = Plus / Plus
Query: 438 tacatgatgttgtccacagcgagaagcgcata----taccttgtcttcgagtacctggat 493
|||||||||||||| ||| |||||||||||| || |||||||| |||||| |||||
Sbjct: 248 tacatgatgttgtctacaacgagaagcgcatgcatctatcttgtcttggagtacatggat 307
Query: 494 ctggacctcaagaagttcatggactcctgcccggagtttgc 534
|||||||| || ||||||||||| | ||||||| ||||||
Sbjct: 308 ctggacctaaacaagttcatggatttttgcccggggtttgc 348
>gb|BZ338416.1|BZ338416 ia95b05.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia95b05 5', DNA sequence
Length = 692
Score = 67.9 bits (34), Expect = 2e-009
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 250 gtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggc 303
|||||||||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 522 gtacgagaagctggagaaagtcggggagggcacgtacgggaaggtgtacaaggc 575
>gb|CW099261.1|CW099261 104_466_11003456_148_34379_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11003456, DNA
sequence
Length = 667
Score = 67.9 bits (34), Expect = 2e-009
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 250 gtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggc 303
|||||||||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 550 gtacgagaagctggagaaagtcggggagggcacgtacgggaaggtgtacaaggc 497
>gb|BG357980.1|BG357980 OV2_32_F10.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 554
Score = 67.9 bits (34), Expect = 2e-009
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 250 gtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggc 303
|||||||||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 120 gtacgagaagctggagaaagtcggggagggcacgtacgggaaggtgtacaaggc 173
>gb|CD224071.1|CD224071 CCC1_31_F12.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_31_F12_A007 5', mRNA sequence
Length = 646
Score = 67.9 bits (34), Expect = 2e-009
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 250 gtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggc 303
|||||||||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 180 gtacgagaagctggagaaagtcggggagggcacgtacgggaaggtgtacaaggc 233
>gb|CD225333.1|CD225333 CCC1_39_B05.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_39_B05_A007 5', mRNA sequence
Length = 664
Score = 67.9 bits (34), Expect = 2e-009
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 250 gtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggc 303
|||||||||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 180 gtacgagaagctggagaaagtcggggagggcacgtacgggaaggtgtacaaggc 233
>gb|CF433083.1|CF433083 NIT1_20_G04.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_20_G04_A002 5', mRNA sequence
Length = 394
Score = 67.9 bits (34), Expect = 2e-009
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 250 gtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggc 303
|||||||||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 189 gtacgagaagctggagaaagtcggggagggcacgtacgggaaggtgtacaaggc 242
>gb|DN551929.1|DN551929 pSPR-RT-MR-H2_H03_C297 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 1314
Score = 67.9 bits (34), Expect = 2e-009
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 250 gtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggcgctgga 309
|||||||||| |||||||| | |||||||||||||||||| |||||||| ||||| |||
Sbjct: 1117 gtacgagaagctggagaaggttggggagggcacgtacgggaaggtgtacagggcgcggga 1058
Query: 310 caaggc 315
|||||
Sbjct: 1057 gaaggc 1052
>gb|CW415234.1|CW415234 fsbb001f115d24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f115d24, DNA
sequence
Length = 576
Score = 65.9 bits (33), Expect = 9e-009
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 249 agtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggcgc 305
||||||||||| |||||||| |||| ||||| ||||||||| ||||||||||||||
Sbjct: 520 agtacgagaagctggagaaggtcggtgaggggacgtacgggaaggtgtacaaggcgc 576
>gb|AW746071.1|AW746071 WS1_39_E06.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 503
Score = 65.9 bits (33), Expect = 9e-009
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 253 cgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggcgctggacaa 312
||||||| ||||| ||||||| |||||||| |||||| ||||||| |||| ||| |
Sbjct: 111 cgagaagctggagcagatcggcgagggcacctacgggcaagtgtacatggcgaaggagac 170
Query: 313 ggccaccaacgagacgatcgcgctcaagaagatccgc 349
|| ||||||||||| ||||||||||||||||||||
Sbjct: 171 gggcaccaacgagatcgtcgcgctcaagaagatccgc 207
>gb|BG103891.1|BG103891 RHIZ2_38_H09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 574
Score = 65.9 bits (33), Expect = 9e-009
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 253 cgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggcgctggacaa 312
||||||| ||||| ||||||| |||||||| |||||| ||||||| |||| ||| |
Sbjct: 124 cgagaagctggagcagatcggcgagggcacctacgggcaagtgtacatggcgaaggagac 183
Query: 313 ggccaccaacgagacgatcgcgctcaagaagatccgc 349
|| ||||||||||| ||||||||||||||||||||
Sbjct: 184 gggcaccaacgagatcgtcgcgctcaagaagatccgc 220
>gb|BG104113.1|BG104113 RHIZ2_40_F09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 444
Score = 65.9 bits (33), Expect = 9e-009
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 253 cgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggcgctggacaa 312
||||||| ||||| ||||||| |||||||| |||||| ||||||| |||| ||| |
Sbjct: 124 cgagaagctggagcagatcggcgagggcacctacgggcaagtgtacatggcgaaggagac 183
Query: 313 ggccaccaacgagacgatcgcgctcaagaagatccgc 349
|| ||||||||||| ||||||||||||||||||||
Sbjct: 184 gggcaccaacgagatcgtcgcgctcaagaagatccgc 220
>gb|CD209450.1|CD209450 HS1_42_F03.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_42_F03_A012 5', mRNA sequence
Length = 666
Score = 65.9 bits (33), Expect = 9e-009
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 253 cgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggcgctggacaa 312
||||||| ||||| ||||||| |||||||| |||||| ||||||| |||| ||| |
Sbjct: 136 cgagaagctggagcagatcggcgagggcacctacgggcaagtgtacatggcgaaggagac 195
Query: 313 ggccaccaacgagacgatcgcgctcaagaagatccgc 349
|| ||||||||||| ||||||||||||||||||||
Sbjct: 196 gggcaccaacgagatcgtcgcgctcaagaagatccgc 232
>gb|CD213102.1|CD213102 HS1_28_F05.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_28_F05_A012 5', mRNA sequence
Length = 693
Score = 65.9 bits (33), Expect = 9e-009
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 253 cgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggcgctggacaa 312
||||||| ||||| ||||||| |||||||| |||||| ||||||| |||| ||| |
Sbjct: 105 cgagaagctggagcagatcggcgagggcacctacgggcaagtgtacatggcgaaggagac 164
Query: 313 ggccaccaacgagacgatcgcgctcaagaagatccgc 349
|| ||||||||||| ||||||||||||||||||||
Sbjct: 165 gggcaccaacgagatcgtcgcgctcaagaagatccgc 201
>gb|CF434357.1|CF434357 NIT1_29_B06.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_29_B06_A002 5', mRNA sequence
Length = 790
Score = 65.9 bits (33), Expect = 9e-009
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 253 cgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggcgctggacaa 312
||||||| ||||| ||||||| |||||||| |||||| ||||||| |||| ||| |
Sbjct: 141 cgagaagctggagcagatcggcgagggcacctacgggcaagtgtacatggcgaaggagac 200
Query: 313 ggccaccaacgagacgatcgcgctcaagaagatccgc 349
|| ||||||||||| ||||||||||||||||||||
Sbjct: 201 gggcaccaacgagatcgtcgcgctcaagaagatccgc 237
>gb|CX621364.1|CX621364 GABR1_57_E08.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_57_E08_A002 5', mRNA sequence
Length = 610
Score = 65.9 bits (33), Expect = 9e-009
Identities = 81/97 (83%)
Strand = Plus / Plus
Query: 253 cgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggcgctggacaa 312
||||||| ||||| ||||||| |||||||| |||||| ||||||| |||| ||| |
Sbjct: 305 cgagaagctggagcagatcggcgagggcacctacgggcaagtgtacatggcgaaggagac 364
Query: 313 ggccaccaacgagacgatcgcgctcaagaagatccgc 349
|| ||||||||||| ||||||||||||||||||||
Sbjct: 365 gggcaccaacgagatcgtcgcgctcaagaagatccgc 401
>gb|CW171851.1|CW171851 104_582_11155960_148_36531_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155960, DNA
sequence
Length = 555
Score = 60.0 bits (30), Expect = 6e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 250 gtacgagaaggtggagaagatcggggagggcacgtacggggtggtgtacaaggc 303
|||||||||| ||||||| || ||||||||||||||||| ||||||||||||
Sbjct: 404 gtacgagaagctggagaaagtccgggagggcacgtacgggaaggtgtacaaggc 457
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 358,857
Number of Sequences: 832831
Number of extensions: 358857
Number of successful extensions: 102097
Number of sequences better than 0.5: 96
Number of HSP's better than 0.5 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101774
Number of HSP's gapped (non-prelim): 297
length of query: 1354
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1334
effective length of database: 474,703,049
effective search space: 633253867366
effective search space used: 633253867366
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)