BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2418946.2.2
         (710 letters)

Database: Sorghum_nucl_with_EST.fasta 
           832,831 sequences; 491,359,669 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BZ780368.1|BZ780368  ii39c04.g1 WGS-SbicolorF (DH5a methy...   297   7e-079
gb|BF656257.1|BF656257  FM1_44_A08.g1_A003 Floral-Induced Me...   178   5e-043
gb|CW232048.1|CW232048  104_681_11211451_148_37351_072 Sorgh...   145   6e-033
gb|CW021618.1|CW021618  104_160_10431366_1_30004 Sorghum met...   109   4e-022
gb|CW414650.1|CW414650  fsbb001f114g15f0 Sorghum methylation...   109   4e-022
gb|BG464515.1|BG464515  EM1_70_F11.g1_A002 Embryo 1 (EM1) So...    96   5e-018
gb|CN137452.1|CN137452  OX1_57_H05.b1_A002 Oxidatively-stres...    52   7e-005
gb|CW299977.1|CW299977  104_783_11463402_116_36252_077 Sorgh...    48   0.001
gb|BE918255.1|BE918255  OV1_1_A10.g1_A002 Ovary 1 (OV1) Sorg...    48   0.001
gb|BE918364.1|BE918364  OV1_2_G01.g1_A002 Ovary 1 (OV1) Sorg...    48   0.001
gb|BE918448.1|BE918448  OV1_3_H04.g1_A002 Ovary 1 (OV1) Sorg...    48   0.001
gb|BE918460.1|BE918460  OV1_4_B02.g1_A002 Ovary 1 (OV1) Sorg...    48   0.001
gb|BF656415.1|BF656415  FM1_45_E11.g2_A003 Floral-Induced Me...    48   0.001
gb|BG054070.1|BG054070  OV2_3_A09.g1_A002 Ovary 2 (OV2) Sorg...    48   0.001
gb|BM330076.1|BM330076  PIC1_46_H07.g1_A002 Pathogen-infecte...    48   0.001
gb|CF758905.1|CF758905  DSAF1_38_A02.g1_A011 Drought-stresse...    48   0.001
gb|CF758940.1|CF758940  DSAF1_38_D04.g1_A011 Drought-stresse...    48   0.001
gb|CF771524.1|CF771524  DSBF1_20_E12.g1_A010 Drought-stresse...    48   0.001
gb|CN147785.1|CN147785  WOUND1_52_D08.b1_A002 Wounded leaves...    46   0.004
gb|DV162820.1|DV162820  P3-G6 Sorghum bicolor greenbug-respo...    42   0.068
gb|CF675626.1|CF675626  THAU2 Subtractive cDNA library from ...    40   0.27 
gb|CF675675.1|CF675675  RUBISCO Subtractive cDNA library fro...    40   0.27 
gb|DR831561.1|DR831561  MT14 Sorghum bicolor greenbug-respon...    40   0.27 
gb|DV162795.1|DV162795  P1-M15 Sorghum bicolor greenbug-resp...    40   0.27 
gb|DV162819.1|DV162819  P5-B11 Sorghum bicolor greenbug-resp...    40   0.27 
gb|DV162819.2|DV162819  P5-B11 Sorghum bicolor greenbug-resp...    40   0.27 
>gb|BZ780368.1|BZ780368 ii39c04.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
           genomic clone ii39c04, DNA sequence
          Length = 589

 Score =  297 bits (150), Expect = 7e-079
 Identities = 174/182 (95%)
 Strand = Plus / Plus

                                                                       
Query: 130 agaccgtatcagtgggcaggagaaggttcagtgcagagttccagctagtgttccggttga 189
           |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 279 agaccgtatcagtgggcaggaggaggttcagtgcagagttccagctcgtgttccggttga 338

                                                                       
Query: 190 tcaagggtctgatatttataacatttacagccatcgtggtaatcctaatagcgatccctg 249
           |||||||||| ||||||||||| ||||||||||||||||||||| ||||||| |||||||
Sbjct: 339 tcaagggtctcatatttataacttttacagccatcgtggtaatcttaatagcaatccctg 398

                                                                       
Query: 250 gcatgacggtgctggacatatttgtttgcatccttgctttcatgcccactggatggggtt 309
           |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gcatgacggttctggacatctttgtttgcatccttgctttcatgcccactggatggggtt 458

             
Query: 310 tg 311
           ||
Sbjct: 459 tg 460
>gb|BF656257.1|BF656257 FM1_44_A08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
           propinquum cDNA, mRNA sequence
          Length = 397

 Score =  178 bits (90), Expect = 5e-043
 Identities = 113/122 (92%)
 Strand = Plus / Plus

                                                                       
Query: 400 tgatgggacttctcctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcgg 459
           |||||||||||||||||||||||||||| |||||||| ||||| ||  |||| ||||| |
Sbjct: 5   tgatgggacttctcctgttcacgcccattgccttccttgcctggttcccgttggtgtccg 64

                                                                       
Query: 460 aattccagaccaggatgctgttcaaccaggcgttcagcagnggtctgcagatctcccgta 519
           ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 65  aattccagaccaggatgctgttcaaccaggccttcagcagaggtctgcagatctcccgta 124

             
Query: 520 tc 521
           ||
Sbjct: 125 tc 126
>gb|CW232048.1|CW232048 104_681_11211451_148_37351_072 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11211451, DNA
           sequence
          Length = 580

 Score =  145 bits (73), Expect = 6e-033
 Identities = 118/138 (85%)
 Strand = Plus / Plus

                                                                       
Query: 422 gcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccaggatgctgtt 481
           |||||| |||||||| ||||| ||  |||||||||| |||||||||||||||||||||||
Sbjct: 1   gcccattgccttccttgcctggttcccgttcgtgtccgaattccagaccaggatgctgtt 60

                                                                       
Query: 482 caaccaggcgttcagcagnggtctgcagatctcccgtatcnnnnnnggacacaagaaaga 541
           ||||||||| |||||||| |||||||||||||||||||||      || |||||||||||
Sbjct: 61  caaccaggccttcagcagaggtctgcagatctcccgtatcctcggaggccacaagaaaga 120

                             
Query: 542 cngagnnacnnggaacaa 559
           | |||  ||  |||||||
Sbjct: 121 ccgagggacccggaacaa 138
>gb|CW021618.1|CW021618 104_160_10431366_1_30004 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 10431366, DNA
           sequence
          Length = 343

 Score =  109 bits (55), Expect = 4e-022
 Identities = 79/87 (90%)
 Strand = Plus / Plus

                                                                       
Query: 130 agaccgtatcagtgggcaggagaaggttcagtgcagagttccagctagtgttccggttga 189
           |||| |||||||| |||||||| |  |||||||||||||||||||| |||||||||||||
Sbjct: 96  agactgtatcagttggcaggaggaaattcagtgcagagttccagcttgtgttccggttga 155

                                      
Query: 190 tcaagggtctgatatttataacattta 216
           |||||||||||||||| ||||| ||||
Sbjct: 156 tcaagggtctgatattcataacgttta 182

 Score = 65.9 bits (33), Expect = 5e-009
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                            
Query: 263 ggacatatttgtttgcatccttgctttcatgcccactggatggggtttg 311
           |||||| ||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 229 ggacatctttgtttgcatccttgcgttcatgccgactgggtggggtttg 277
>gb|CW414650.1|CW414650 fsbb001f114g15f0 Sorghum methylation filtered library (LibID: 104)
           Sorghum bicolor genomic clone fsbb001f114g15, DNA
           sequence
          Length = 727

 Score =  109 bits (55), Expect = 4e-022
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                       
Query: 130 agaccgtatcagtgggcaggagaaggttcagtgcagagttccagctagtgttccggttga 189
           |||| |||||||| |||||||| |  |||||||||||||||||||| |||||||||||||
Sbjct: 324 agactgtatcagttggcaggaggaaattcagtgcagagttccagcttgtgttccggttga 265

                                      
Query: 190 tcaagggtctgatatttataacattta 216
           |||||||||||||||| ||||| ||||
Sbjct: 264 tcaagggtctgatattcataacgttta 238

 Score = 65.9 bits (33), Expect = 5e-009
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                            
Query: 263 ggacatatttgtttgcatccttgctttcatgcccactggatggggtttg 311
           |||||| ||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 191 ggacatctttgtttgcatccttgcgttcatgccgactgggtggggtttg 143
>gb|BG464515.1|BG464515 EM1_70_F11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
           sequence
          Length = 423

 Score = 95.6 bits (48), Expect = 5e-018
 Identities = 137/168 (81%)
 Strand = Plus / Plus

                                                                       
Query: 354 gggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctc 413
           ||||| ||||| ||| |||| || |||||||| ||||| |||||| | |||||  | || 
Sbjct: 73  gggctatggggatcggtcaaagcgcttgcccgaggctatgagatcatcatgggcttgctg 132

                                                                       
Query: 414 ctgttcacgcccatcgccttcctcgcctgnttnncgttcgtgtcggaattccagaccagg 473
           |||||||| || ||||| ||||| || || ||  |||| || ||||| |||||||| |||
Sbjct: 133 ctgttcaccccgatcgcattcctagcttggttcccgtttgtttcggagttccagacaagg 192

                                                           
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgcagatctcccgtatc 521
           ||||| ||||||||||| ||||| || ||||||||||| || ||||||
Sbjct: 193 atgctattcaaccaggccttcagtagaggtctgcagatttctcgtatc 240
>gb|CN137452.1|CN137452 OX1_57_H05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
           bicolor cDNA clone OX1_57_H05_A002 3', mRNA sequence
          Length = 732

 Score = 52.0 bits (26), Expect = 7e-005
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                       
Query: 121 tcgttatgaagaccgtatcagtgggcaggagaaggttcagtgcagagttccagctagtgt 180
           ||||||||||||| || || ||||| ||| |||  ||||||||||| ||||||||| | |
Sbjct: 180 tcgttatgaagacagtgtcggtgggaaggcgaacattcagtgcagatttccagctattct 239

                         
Query: 181 tccggttgatcaag 194
           ||||  ||||||||
Sbjct: 240 tccgtctgatcaag 253
>gb|CW299977.1|CW299977 104_783_11463402_116_36252_077 Sorghum methylation filtered library
           (LibID: 104) Sorghum bicolor genomic clone 11463402, DNA
           sequence
          Length = 563

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
           ||||||||||||||||||||||| |||
Sbjct: 174 ctgttcaaccaggcgttcagcagaggt 148
>gb|BE918255.1|BE918255 OV1_1_A10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
          Length = 352

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
           ||||||||||||||||||||||| |||
Sbjct: 250 ctgttcaaccaggcgttcagcagaggt 276
>gb|BE918364.1|BE918364 OV1_2_G01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
          Length = 651

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
           ||||||||||||||||||||||| |||
Sbjct: 353 ctgttcaaccaggcgttcagcagaggt 379
>gb|BE918448.1|BE918448 OV1_3_H04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
          Length = 508

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
           ||||||||||||||||||||||| |||
Sbjct: 196 ctgttcaaccaggcgttcagcagaggt 222
>gb|BE918460.1|BE918460 OV1_4_B02.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
          Length = 650

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
           ||||||||||||||||||||||| |||
Sbjct: 341 ctgttcaaccaggcgttcagcagaggt 367
>gb|BF656415.1|BF656415 FM1_45_E11.g2_A003 Floral-Induced Meristem 1 (FM1) Sorghum
           propinquum cDNA, mRNA sequence
          Length = 601

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
           ||||||||||||||||||||||| |||
Sbjct: 283 ctgttcaaccaggcgttcagcagaggt 309
>gb|BG054070.1|BG054070 OV2_3_A09.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
          Length = 590

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
           ||||||||||||||||||||||| |||
Sbjct: 287 ctgttcaaccaggcgttcagcagaggt 313
>gb|BM330076.1|BM330076 PIC1_46_H07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
           bicolor cDNA, mRNA sequence
          Length = 612

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
           ||||||||||||||||||||||| |||
Sbjct: 285 ctgttcaaccaggcgttcagcagaggt 311
>gb|CF758905.1|CF758905 DSAF1_38_A02.g1_A011 Drought-stressed after flowering Sorghum
           bicolor cDNA clone DSAF1_38_A02_A011 3', mRNA sequence
          Length = 344

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
           ||||||||||||||||||||||| |||
Sbjct: 28  ctgttcaaccaggcgttcagcagaggt 54
>gb|CF758940.1|CF758940 DSAF1_38_D04.g1_A011 Drought-stressed after flowering Sorghum
           bicolor cDNA clone DSAF1_38_D04_A011 3', mRNA sequence
          Length = 345

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
           ||||||||||||||||||||||| |||
Sbjct: 28  ctgttcaaccaggcgttcagcagaggt 54
>gb|CF771524.1|CF771524 DSBF1_20_E12.g1_A010 Drought-stressed before flowering Sorghum
           bicolor cDNA clone DSBF1_20_E12_A010 3', mRNA sequence
          Length = 634

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 477 ctgttcaaccaggcgttcagcagnggt 503
           ||||||||||||||||||||||| |||
Sbjct: 290 ctgttcaaccaggcgttcagcagaggt 316
>gb|CN147785.1|CN147785 WOUND1_52_D08.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
           WOUND1_52_D08_A002 3', mRNA sequence
          Length = 735

 Score = 46.1 bits (23), Expect = 0.004
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 478 tgttcaaccaggcgttcagcagnggt 503
           |||||||||||||||||||||| |||
Sbjct: 435 tgttcaaccaggcgttcagcagaggt 460
>gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-responsive cDNA library Sorghum
           bicolor cDNA 5', mRNA sequence
          Length = 223

 Score = 42.1 bits (21), Expect = 0.068
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   gcggccgcccgggcaggtacg 21
           |||||||||||||||||||||
Sbjct: 119 gcggccgcccgggcaggtacg 99
>gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from sorghum infested by greenbug
           aphids Sorghum bicolor cDNA clone THAU2 similar to
           Thaumatin-like protein, mRNA sequence
          Length = 747

 Score = 40.1 bits (20), Expect = 0.27
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 204 gcggccgcccgggcaggtac 223

 Score = 40.1 bits (20), Expect = 0.27
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 211 gcggccgcccgggcaggtac 192
>gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library from sorghum infested by greenbug
           aphids Sorghum bicolor cDNA clone RUBISCO similar to
           Ribulose 1,5-biphosphate carboxylase, mRNA sequence
          Length = 638

 Score = 40.1 bits (20), Expect = 0.27
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   gcggccgcccgggcaggtac 20
           ||||||||||||||||||||
Sbjct: 225 gcggccgcccgggcaggtac 244
>gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-responsive cDNA library Sorghum
          bicolor cDNA 5', mRNA sequence
          Length = 112

 Score = 40.1 bits (20), Expect = 0.27
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  gcggccgcccgggcaggtac 20
          ||||||||||||||||||||
Sbjct: 2  gcggccgcccgggcaggtac 21
>gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-responsive cDNA library Sorghum
          bicolor cDNA 5', mRNA sequence
          Length = 282

 Score = 40.1 bits (20), Expect = 0.27
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  gcggccgcccgggcaggtac 20
          ||||||||||||||||||||
Sbjct: 32 gcggccgcccgggcaggtac 51
>gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
          bicolor cDNA 5', mRNA sequence
          Length = 234

 Score = 40.1 bits (20), Expect = 0.27
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 1  gcggccgcccgggcaggtac 20
          ||||||||||||||||||||
Sbjct: 84 gcggccgcccgggcaggtac 65
>gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
          bicolor cDNA 5', mRNA sequence
          Length = 172

 Score = 40.1 bits (20), Expect = 0.27
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 1  gcggccgcccgggcaggtac 20
          ||||||||||||||||||||
Sbjct: 21 gcggccgcccgggcaggtac 2
  Database: Sorghum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:54 PM
  Number of letters in database: 491,359,669
  Number of sequences in database:  832,831
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 107,373
Number of Sequences: 832831
Number of extensions: 107373
Number of successful extensions: 30464
Number of sequences better than  0.5: 26
Number of HSP's better than  0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30431
Number of HSP's gapped (non-prelim): 32
length of query: 710
length of database: 491,359,669
effective HSP length: 20
effective length of query: 690
effective length of database: 474,703,049
effective search space: 327545103810
effective search space used: 327545103810
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)