BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418946.2.1
(690 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF656257.1|BF656257 FM1_44_A08.g1_A003 Floral-Induced Me... 238 6e-061
gb|CW232048.1|CW232048 104_681_11211451_148_37351_072 Sorgh... 226 2e-057
gb|BZ780368.1|BZ780368 ii39c04.g1 WGS-SbicolorF (DH5a methy... 161 1e-037
gb|BG464515.1|BG464515 EM1_70_F11.g1_A002 Embryo 1 (EM1) So... 137 2e-030
gb|CW021618.1|CW021618 104_160_10431366_1_30004 Sorghum met... 70 3e-010
gb|CW414650.1|CW414650 fsbb001f114g15f0 Sorghum methylation... 70 3e-010
gb|CW178027.1|CW178027 104_591_11159344_148_36609_054 Sorgh... 54 2e-005
gb|CW299977.1|CW299977 104_783_11463402_116_36252_077 Sorgh... 54 2e-005
gb|BE918255.1|BE918255 OV1_1_A10.g1_A002 Ovary 1 (OV1) Sorg... 54 2e-005
gb|BE918364.1|BE918364 OV1_2_G01.g1_A002 Ovary 1 (OV1) Sorg... 54 2e-005
gb|BE918448.1|BE918448 OV1_3_H04.g1_A002 Ovary 1 (OV1) Sorg... 54 2e-005
gb|BE918460.1|BE918460 OV1_4_B02.g1_A002 Ovary 1 (OV1) Sorg... 54 2e-005
gb|BF656415.1|BF656415 FM1_45_E11.g2_A003 Floral-Induced Me... 54 2e-005
gb|BG054070.1|BG054070 OV2_3_A09.g1_A002 Ovary 2 (OV2) Sorg... 54 2e-005
gb|BM330076.1|BM330076 PIC1_46_H07.g1_A002 Pathogen-infecte... 54 2e-005
gb|CF758905.1|CF758905 DSAF1_38_A02.g1_A011 Drought-stresse... 54 2e-005
gb|CF758940.1|CF758940 DSAF1_38_D04.g1_A011 Drought-stresse... 54 2e-005
gb|CF771524.1|CF771524 DSBF1_20_E12.g1_A010 Drought-stresse... 54 2e-005
gb|CN147785.1|CN147785 WOUND1_52_D08.b1_A002 Wounded leaves... 52 7e-005
gb|CD226155.1|CD226155 CCC1_44_C07.b1_A007 Callus culture/c... 50 3e-004
gb|CW047497.1|CW047497 104_285_10512756_115_30217 Sorghum m... 44 0.017
gb|CW168326.1|CW168326 104_577_11154083_148_36496_034 Sorgh... 44 0.017
gb|BM325630.1|BM325630 PIC1_46_H07.b1_A002 Pathogen-infecte... 40 0.26
>gb|BF656257.1|BF656257 FM1_44_A08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 397
Score = 238 bits (120), Expect = 6e-061
Identities = 150/160 (93%)
Strand = Plus / Plus
Query: 197 tgatgggacttctcctgttcacgcccatcgccttcctcgcctggttcccgttcgtgtcgg 256
|||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |
Sbjct: 5 tgatgggacttctcctgttcacgcccattgccttccttgcctggttcccgttggtgtccg 64
Query: 257 aattccagaccaggatgctgttcaaccaggcgttcagcagaggtctgcagatctcccgta 316
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 65 aattccagaccaggatgctgttcaaccaggccttcagcagaggtctgcagatctcccgta 124
Query: 317 tcctgggaggacacaagaaagaccgagggacccggaacaa 356
|||| ||||| | ||||||||||||||| ||||||||||
Sbjct: 125 tcctcggaggccgcaagaaagaccgaggatcccggaacaa 164
>gb|CW232048.1|CW232048 104_681_11211451_148_37351_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11211451, DNA
sequence
Length = 580
Score = 226 bits (114), Expect = 2e-057
Identities = 132/138 (95%)
Strand = Plus / Plus
Query: 219 gcccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccaggatgctgtt 278
|||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 gcccattgccttccttgcctggttcccgttcgtgtccgaattccagaccaggatgctgtt 60
Query: 279 caaccaggcgttcagcagaggtctgcagatctcccgtatcctgggaggacacaagaaaga 338
||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 61 caaccaggccttcagcagaggtctgcagatctcccgtatcctcggaggccacaagaaaga 120
Query: 339 ccgagggacccggaacaa 356
||||||||||||||||||
Sbjct: 121 ccgagggacccggaacaa 138
>gb|BZ780368.1|BZ780368 ii39c04.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii39c04, DNA sequence
Length = 589
Score = 161 bits (81), Expect = 1e-037
Identities = 93/97 (95%)
Strand = Plus / Plus
Query: 14 cagccatcgtggtaatcctaatagcgatccctggcatgacggtgctggacatatttgttt 73
||||||||||||||||| ||||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 366 cagccatcgtggtaatcttaatagcaatccctggcatgacggttctggacatctttgttt 425
Query: 74 gcatccttgctttcatgcccactggatggggtttgct 110
|||||||||||||||||||||||||||||||||||||
Sbjct: 426 gcatccttgctttcatgcccactggatggggtttgct 462
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 114 gattgcccaagcgatccggcctgtgat 140
|||||||||||||||| ||||||||||
Sbjct: 558 gattgcccaagcgatcaggcctgtgat 584
>gb|BG464515.1|BG464515 EM1_70_F11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 423
Score = 137 bits (69), Expect = 2e-030
Identities = 159/189 (84%)
Strand = Plus / Plus
Query: 151 gggctctggggctcgatcaaggctcttgcccggggctacgagatcctgatgggacttctc 210
||||| ||||| ||| |||| || |||||||| ||||| |||||| | ||||| | ||
Sbjct: 73 gggctatggggatcggtcaaagcgcttgcccgaggctatgagatcatcatgggcttgctg 132
Query: 211 ctgttcacgcccatcgccttcctcgcctggttcccgttcgtgtcggaattccagaccagg 270
|||||||| || ||||| ||||| || ||||||||||| || ||||| |||||||| |||
Sbjct: 133 ctgttcaccccgatcgcattcctagcttggttcccgtttgtttcggagttccagacaagg 192
Query: 271 atgctgttcaaccaggcgttcagcagaggtctgcagatctcccgtatcctgggaggacac 330
||||| ||||||||||| ||||| |||||||||||||| || |||||||| || ||||||
Sbjct: 193 atgctattcaaccaggccttcagtagaggtctgcagatttctcgtatcctaggtggacac 252
Query: 331 aagaaagac 339
|| ||||||
Sbjct: 253 aaaaaagac 261
>gb|CW021618.1|CW021618 104_160_10431366_1_30004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431366, DNA
sequence
Length = 343
Score = 69.9 bits (35), Expect = 3e-010
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 60 ggacatatttgtttgcatccttgctttcatgcccactggatggggtttgct 110
|||||| ||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 229 ggacatctttgtttgcatccttgcgttcatgccgactgggtggggtttgct 279
>gb|CW414650.1|CW414650 fsbb001f114g15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f114g15, DNA
sequence
Length = 727
Score = 69.9 bits (35), Expect = 3e-010
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 60 ggacatatttgtttgcatccttgctttcatgcccactggatggggtttgct 110
|||||| ||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 191 ggacatctttgtttgcatccttgcgttcatgccgactgggtggggtttgct 141
>gb|CW178027.1|CW178027 104_591_11159344_148_36609_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159344, DNA
sequence
Length = 659
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 602 attaattcctaatggaaactgatttgtgaat 632
||||||||||||||||||||||||| |||||
Sbjct: 367 attaattcctaatggaaactgatttatgaat 397
>gb|CW299977.1|CW299977 104_783_11463402_116_36252_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463402, DNA
sequence
Length = 563
Score = 54.0 bits (27), Expect = 2e-005
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 274 ctgttcaaccaggcgttcagcagaggt 300
|||||||||||||||||||||||||||
Sbjct: 174 ctgttcaaccaggcgttcagcagaggt 148
>gb|BE918255.1|BE918255 OV1_1_A10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 352
Score = 54.0 bits (27), Expect = 2e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 274 ctgttcaaccaggcgttcagcagaggt 300
|||||||||||||||||||||||||||
Sbjct: 250 ctgttcaaccaggcgttcagcagaggt 276
>gb|BE918364.1|BE918364 OV1_2_G01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 651
Score = 54.0 bits (27), Expect = 2e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 274 ctgttcaaccaggcgttcagcagaggt 300
|||||||||||||||||||||||||||
Sbjct: 353 ctgttcaaccaggcgttcagcagaggt 379
>gb|BE918448.1|BE918448 OV1_3_H04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 508
Score = 54.0 bits (27), Expect = 2e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 274 ctgttcaaccaggcgttcagcagaggt 300
|||||||||||||||||||||||||||
Sbjct: 196 ctgttcaaccaggcgttcagcagaggt 222
>gb|BE918460.1|BE918460 OV1_4_B02.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 650
Score = 54.0 bits (27), Expect = 2e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 274 ctgttcaaccaggcgttcagcagaggt 300
|||||||||||||||||||||||||||
Sbjct: 341 ctgttcaaccaggcgttcagcagaggt 367
>gb|BF656415.1|BF656415 FM1_45_E11.g2_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 601
Score = 54.0 bits (27), Expect = 2e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 274 ctgttcaaccaggcgttcagcagaggt 300
|||||||||||||||||||||||||||
Sbjct: 283 ctgttcaaccaggcgttcagcagaggt 309
>gb|BG054070.1|BG054070 OV2_3_A09.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 590
Score = 54.0 bits (27), Expect = 2e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 274 ctgttcaaccaggcgttcagcagaggt 300
|||||||||||||||||||||||||||
Sbjct: 287 ctgttcaaccaggcgttcagcagaggt 313
>gb|BM330076.1|BM330076 PIC1_46_H07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 612
Score = 54.0 bits (27), Expect = 2e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 274 ctgttcaaccaggcgttcagcagaggt 300
|||||||||||||||||||||||||||
Sbjct: 285 ctgttcaaccaggcgttcagcagaggt 311
>gb|CF758905.1|CF758905 DSAF1_38_A02.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_38_A02_A011 3', mRNA sequence
Length = 344
Score = 54.0 bits (27), Expect = 2e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 274 ctgttcaaccaggcgttcagcagaggt 300
|||||||||||||||||||||||||||
Sbjct: 28 ctgttcaaccaggcgttcagcagaggt 54
>gb|CF758940.1|CF758940 DSAF1_38_D04.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_38_D04_A011 3', mRNA sequence
Length = 345
Score = 54.0 bits (27), Expect = 2e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 274 ctgttcaaccaggcgttcagcagaggt 300
|||||||||||||||||||||||||||
Sbjct: 28 ctgttcaaccaggcgttcagcagaggt 54
>gb|CF771524.1|CF771524 DSBF1_20_E12.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_20_E12_A010 3', mRNA sequence
Length = 634
Score = 54.0 bits (27), Expect = 2e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 274 ctgttcaaccaggcgttcagcagaggt 300
|||||||||||||||||||||||||||
Sbjct: 290 ctgttcaaccaggcgttcagcagaggt 316
>gb|CN147785.1|CN147785 WOUND1_52_D08.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_52_D08_A002 3', mRNA sequence
Length = 735
Score = 52.0 bits (26), Expect = 7e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 275 tgttcaaccaggcgttcagcagaggt 300
||||||||||||||||||||||||||
Sbjct: 435 tgttcaaccaggcgttcagcagaggt 460
>gb|CD226155.1|CD226155 CCC1_44_C07.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_44_C07_A007 3', mRNA sequence
Length = 647
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 602 attaattcctaatggaaactgattt 626
|||||||||||||||||||||||||
Sbjct: 623 attaattcctaatggaaactgattt 647
>gb|CW047497.1|CW047497 104_285_10512756_115_30217 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512756, DNA
sequence
Length = 421
Score = 44.1 bits (22), Expect = 0.017
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 238 tggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggc 287
|||||||| ||||| || ||||||||||| || ||||||| ||||||||
Sbjct: 117 tggttccccttcgtctctgaattccagacacggctgctgtttaaccaggc 166
>gb|CW168326.1|CW168326 104_577_11154083_148_36496_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154083, DNA
sequence
Length = 690
Score = 44.1 bits (22), Expect = 0.017
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 238 tggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggc 287
|||||||| ||||| || ||||||||||| || ||||||| ||||||||
Sbjct: 374 tggttccccttcgtctctgaattccagacacggctgctgtttaaccaggc 325
>gb|BM325630.1|BM325630 PIC1_46_H07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 588
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 281 accaggcgttcagcagaggt 300
||||||||||||||||||||
Sbjct: 536 accaggcgttcagcagaggt 555
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 153,411
Number of Sequences: 832831
Number of extensions: 153411
Number of successful extensions: 41785
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41755
Number of HSP's gapped (non-prelim): 30
length of query: 690
length of database: 491,359,669
effective HSP length: 19
effective length of query: 671
effective length of database: 475,535,880
effective search space: 319084575480
effective search space used: 319084575480
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)