BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418861.2.2
(1617 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX611601.1|CX611601 ANR1_25_D05.g1_A002 Anaerobic roots ... 922 0.0
gb|CX617235.1|CX617235 GABR1_32_C02.g1_A002 GA- or brassino... 852 0.0
gb|CN145512.1|CN145512 WOUND1_33_H10.b1_A002 Wounded leaves... 757 0.0
gb|CX609668.1|CX609668 ANR1_14_B09.b1_A002 Anaerobic roots ... 757 0.0
gb|CF486612.1|CF486612 POL1_38_E10.g1_A002 Pollen Sorghum b... 743 0.0
gb|BI074628.1|BI074628 IP1_13_B09.b1_A002 Immature pannicle... 726 0.0
gb|CN146158.1|CN146158 WOUND1_38_C11.b1_A002 Wounded leaves... 595 e-168
gb|CF486524.1|CF486524 POL1_38_E10.b1_A002 Pollen Sorghum b... 591 e-167
gb|BG052086.1|BG052086 RHIZ2_5_H11.b1_A003 Rhizome2 (RHIZ2)... 537 e-150
gb|CN146201.1|CN146201 WOUND1_38_C11.g1_A002 Wounded leaves... 517 e-144
gb|CX617157.1|CX617157 GABR1_32_C02.b1_A002 GA- or brassino... 426 e-117
gb|CX609750.1|CX609750 ANR1_14_B09.g1_A002 Anaerobic roots ... 355 8e-096
gb|BG051876.1|BG051876 RHIZ2_5_H11.g1_A003 Rhizome2 (RHIZ2)... 343 3e-092
gb|CX611518.1|CX611518 ANR1_25_D05.b1_A002 Anaerobic roots ... 333 3e-089
gb|BG948190.1|BG948190 IP1_10_E01.g1_A002 Immature pannicle... 276 6e-072
gb|CW252312.1|CW252312 104_715_11224427_116_35094_042 Sorgh... 266 6e-069
gb|CW024829.1|CW024829 104_226_10487799_114_30497 Sorghum m... 260 4e-067
gb|BG948180.1|BG948180 IP1_10_D02.g1_A002 Immature pannicle... 260 4e-067
gb|BI141282.1|BI141282 IP1_53_F11.g1_A002 Immature pannicle... 252 9e-065
gb|CW391886.1|CW391886 fsbb001f078d24f0 Sorghum methylation... 242 8e-062
gb|CN145583.1|CN145583 WOUND1_33_H10.g1_A002 Wounded leaves... 240 3e-061
gb|BG948491.1|BG948491 IP1_10_D02.b1_A002 Immature pannicle... 200 3e-049
gb|CW097070.1|CW097070 104_463_11002253_148_34358_031 Sorgh... 180 3e-043
gb|CW294831.1|CW294831 104_775_11415393_116_35774_033 Sorgh... 180 3e-043
gb|CW477444.1|CW477444 fsbb001f234m15f0 Sorghum methylation... 180 3e-043
gb|CW477445.1|CW477445 fsbb001f234m15k0 Sorghum methylation... 180 3e-043
gb|CW491399.1|CW491399 fsbb001f281e01f0 Sorghum methylation... 180 3e-043
gb|AW287677.2|AW287677 LG1_271_A09.b1_A002 Light Grown 1 (L... 180 3e-043
gb|CD221282.1|CD221282 CCC1_74_C08.g1_A007 Callus culture/c... 180 3e-043
gb|CN130770.1|CN130770 RHOH1_43_E05.g1_A002 Acid- and alkal... 180 3e-043
gb|BG051067.1|BG051067 FM1_55_H09.b1_A003 Floral-Induced Me... 174 2e-041
gb|CL182361.1|CL182361 104_393_10897375_148_31921_367 Sorgh... 168 1e-039
gb|CW167063.1|CW167063 104_576_11153401_148_37468_013 Sorgh... 168 1e-039
gb|CW468212.1|CW468212 fsbb001f220e08f0 Sorghum methylation... 168 1e-039
gb|CW133418.1|CW133418 104_517_11116752_148_34815_094 Sorgh... 163 6e-038
gb|CW294832.1|CW294832 104_775_11415393_148_35775_033 Sorgh... 163 6e-038
gb|CW386868.1|CW386868 fsbb001f070p13f0 Sorghum methylation... 161 2e-037
gb|CW142834.1|CW142834 104_534_11137080_148_34945_090 Sorgh... 143 6e-032
gb|BG051066.1|BG051066 FM1_55_H08.b1_A003 Floral-Induced Me... 143 6e-032
gb|BZ691891.1|BZ691891 SP__Ba0013N22.r SP__Ba Sorghum propi... 141 2e-031
gb|CW785636.1|CW785636 SP__Ba0013N22.r SP__Ba Sorghum propi... 141 2e-031
gb|CF432357.1|CF432357 NIT1_13_H09.b1_A002 Nitrogen-deficie... 141 2e-031
gb|CW468213.1|CW468213 fsbb001f220e08k0 Sorghum methylation... 137 4e-030
gb|CL157010.1|CL157010 104_344_10783254_116_31374_198 Sorgh... 135 1e-029
gb|CW178024.1|CW178024 104_591_11159343_116_36607_054 Sorgh... 127 3e-027
gb|CW292408.1|CW292408 104_772_11414072_116_35578_024 Sorgh... 127 3e-027
gb|CW391887.1|CW391887 fsbb001f078d24k0 Sorghum methylation... 127 3e-027
gb|CW292409.1|CW292409 104_772_11414072_148_35582_024 Sorgh... 121 2e-025
gb|CW252313.1|CW252313 104_715_11224427_148_35090_042 Sorgh... 115 1e-023
gb|CW058559.1|CW058559 104_301_10518804_115_30164 Sorghum m... 113 5e-023
gb|CW178025.1|CW178025 104_591_11159343_148_36608_054 Sorgh... 113 5e-023
gb|CW142833.1|CW142833 104_534_11137080_116_34949_090 Sorgh... 111 2e-022
gb|CW231088.1|CW231088 104_680_11210941_116_37341_059 Sorgh... 111 2e-022
gb|CW450904.1|CW450904 fsbb001f189m03f0 Sorghum methylation... 107 3e-021
gb|CL157009.1|CL157009 104_344_10783254_114_31373_198 Sorgh... 100 8e-019
gb|CW176943.1|CW176943 104_590_11158755_148_36591_014 Sorgh... 96 1e-017
gb|CF484623.1|CF484623 POL1_26_B01.g1_A002 Pollen Sorghum b... 86 1e-014
gb|CW386869.1|CW386869 fsbb001f070p13k0 Sorghum methylation... 84 5e-014
gb|CW442312.1|CW442312 fsbb001f161o16f0 Sorghum methylation... 78 3e-012
gb|CW453085.1|CW453085 fsbb001f193o24f0 Sorghum methylation... 68 3e-009
gb|BF318031.1|BF318031 OV1_10_H12.b1_A002 Ovary 1 (OV1) Sor... 68 3e-009
gb|CN146194.1|CN146194 WOUND1_38_B11.g1_A002 Wounded leaves... 66 1e-008
gb|CW162418.1|CW162418 104_569_11150932_116_36441_004 Sorgh... 64 4e-008
gb|BG948501.1|BG948501 IP1_10_E01.b1_A002 Immature pannicle... 62 2e-007
gb|BI076120.1|BI076120 IP1_25_A09.b1_A002 Immature pannicle... 62 2e-007
gb|CL178986.1|CL178986 104_387_10894976_116_31906_272 Sorgh... 58 3e-006
gb|BZ423764.1|BZ423764 id53a11.g1 WGS-SbicolorF (DH5a methy... 52 2e-004
gb|BZ424019.1|BZ424019 id56a09.g1 WGS-SbicolorF (DH5a methy... 52 2e-004
gb|CW025249.1|CW025249 104_226_10488078_116_30523 Sorghum m... 52 2e-004
gb|BG464985.1|BG464985 EM1_34_F10.b1_A002 Embryo 1 (EM1) So... 52 2e-004
gb|CW483980.1|CW483980 fsbb001f245o03f0 Sorghum methylation... 50 6e-004
gb|BZ781678.1|BZ781678 ii30h03.g1 WGS-SbicolorF (DH5a methy... 46 0.010
gb|CW108786.1|CW108786 104_480_11097710_116_34494_053 Sorgh... 46 0.010
gb|CW108787.1|CW108787 104_480_11097710_148_34498_053 Sorgh... 46 0.010
gb|CW257775.1|CW257775 104_723_11227518_116_35161_025 Sorgh... 46 0.010
gb|CW479900.1|CW479900 fsbb001f238k14f0 Sorghum methylation... 46 0.010
gb|CW196811.1|CW196811 104_621_11181361_148_36818_015 Sorgh... 44 0.040
>gb|CX611601.1|CX611601 ANR1_25_D05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_25_D05_A002 5', mRNA sequence
Length = 804
Score = 922 bits (465), Expect = 0.0
Identities = 600/645 (93%)
Strand = Plus / Minus
Query: 771 ggatcatagtgatccgtaatgcaccactcgtacacggcaaagcactggccaggcttcaac 830
|||||||||||||| |||||||||||||| || || ||||||||||| || |||||||||
Sbjct: 803 ggatcatagtgatcagtaatgcaccactcatatacagcaaagcactgaccgggcttcaac 744
Query: 831 acacgatatatctccttgtagcaaccaactggatcaggtgcatgacatgttgcctcaatg 890
||||| |||||||| || ||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 743 acacggtatatctcgttatagcagccaaccggatcaggtgcatgacatgttgcctcaatt 684
Query: 891 gcgtaaacagcatcaaaagtgttgtcatcgaacggcatcttcatgaagtccgccttgaca 950
|| |||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||
Sbjct: 683 gcataaacagcatcaaaagtgttatcatcaaatggcatcttcatgaagtctgccttgaca 624
Query: 951 aaatcacatgttccactaattcctgctaaacggttgagctcctttcccctggttatctgg 1010
|||||||| |||||||||| |||||| || || |||||||||||||||||||||||||||
Sbjct: 623 aaatcacaggttccactaactcctgccaaccgattgagctcctttcccctggttatctgg 564
Query: 1011 tattcgttgttattcaatccggtaactgaagttgagctaaatcttgcaatttctctcagt 1070
||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct: 563 tattcattgttattcaatccagtaactgaagttgagctaaatctcgcaatctctctcagc 504
Query: 1071 ggtccacctattccacagcccacatctaaaaccttcattcctggtttcaaaccaagttgc 1130
|||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 503 ggtccacctattccgcagcccacatccaaaaccttcattcctggtttcaagccaagctgc 444
Query: 1131 agggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattctccattccatctg 1190
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 443 agggcaagaaaatgctcatgacgcttgatgctttcacgcaaggattctccattccatctg 384
Query: 1191 tgagcaaagtggaaggattcaccccaaccatactcatagaagctagtggcaagatcatag 1250
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgagcaaagtggaaggattcaccccaaccatactcatagaagctagtggcaagatcataa 324
Query: 1251 tatttattaaccatatcagtatagttggacttccttgcttcctccttccctccatagtat 1310
||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct: 323 tatttgttaaccatatcagtgtagttggactttcttgcttcctccttccctccataatat 264
Query: 1311 ccatgatatttctcatactcatcgacggccgacttgacttccaccttgttgatcttccct 1370
|||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||
Sbjct: 263 ccatgatatttctcatactcatcgactgccgatttgacttcctccttgttgatcttccct 204
Query: 1371 ccgaggccagaagcaagatccagcgctcccgacttggacatcgtg 1415
||||||||||| ||||||||||| ||||||| ||| |||||||||
Sbjct: 203 ccgaggccagatgcaagatccagggctcccgccttcgacatcgtg 159
>gb|CX617235.1|CX617235 GABR1_32_C02.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_32_C02_A002 5', mRNA sequence
Length = 777
Score = 852 bits (430), Expect = 0.0
Identities = 502/526 (95%), Gaps = 5/526 (0%)
Strand = Plus / Minus
Query: 923 cggcatcttcatgaagtccgccttgacaaaatcacatgttccactaattcctgctaaacg 982
|||||| ||||||||||| |||| |||||||||||| ||||||||||||||||| |||||
Sbjct: 777 cggcattttcatgaagtctgcctggacaaaatcacaggttccactaattcctgccaaacg 718
Query: 983 gttgagctcctttcccctggttatctggtattcgttgttattcaatccggtaactgaagt 1042
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 717 attgagctcctttcccctggttatctggtactcattgttattcaatccggtaactgaagt 658
Query: 1043 tgagctaaatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaac 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tgagctaaatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaac 598
Query: 1103 cttcattcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgct 1162
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cttcattcctggcttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgct 538
Query: 1163 ttcacgtaaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccata 1222
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ttcgcgtaaggattctccattccatctgtgagcaaagtggaaggattcaccccaaccata 478
Query: 1223 ctcatagaagctagtggcaagatcatagtatttattaaccatatcagtatagttggactt 1282
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ctcatagaagctagtggctagatcatagtatttattaaccatatcagtatagttggactt 418
Query: 1283 ccttgcttcctccttccctccatagtatccatgatatttctcatactcatcgacggccga 1342
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 417 tcttgcttcctccttccctccatagtaaccatgatatttctcatactcatcgacggccga 358
Query: 1343 cttgacttccaccttgttgatcttccctccgaggccagaagcaagatccagcgctcccga 1402
||| ||| || |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cttcactccctccttgtcgatcttccctccgaggccagaagcaagatccagcgctcccga 298
Query: 1403 cttggacatc-----gtgtaggcggccgggacggatcaaatgcacc 1443
|||||||||| |||||||||||||| ||||||| ||||||||
Sbjct: 297 cttggacatcgtgtagtgtaggcggccggtacggatcgaatgcacc 252
>gb|CN145512.1|CN145512 WOUND1_33_H10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_33_H10_A002 3', mRNA sequence
Length = 858
Score = 757 bits (382), Expect = 0.0
Identities = 463/490 (94%)
Strand = Plus / Minus
Query: 364 gtgatccaagagctcattccagaagaggcttccgaacaagaaagaagtacattggcgtga 423
|||||||||||||||||||| || |||||| || ||||||||||||||||||| ||||
Sbjct: 490 gtgatccaagagctcattccgaaaccggcttctgagcaagaaagaagtacattggtgtga 431
Query: 424 agatctccttctttccgccctctaccagcccttctgcagccttctccaggaaattagaga 483
||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct: 430 agatctccttctttccgccctctacgagaccttctgcagccttctctaggaaattagaga 371
Query: 484 ccctctcactgccctgcggagcaagaccaacgtactccagggccttgaccattgtgcggg 543
|||||||||||||||| |||||||||||||| || |||| |||||||||||||||||| |
Sbjct: 370 ccctctcactgccctgtggagcaagaccaacatattccaaggccttgaccattgtgcgag 311
Query: 544 taatcatgcgtcccacagaggtcaaacggaagctactcagggagaatcggcttggatcca 603
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 310 taatcatgcgtcccacagaagtcaaacggaagctactcagggaaaatcggcttggatcca 251
Query: 604 agggcaagtaccaaggcaagggagaatcttcagcaagatccttatcccaaacaacctcaa 663
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 250 agggcaagtaccaaggcaagggggaatcttcagcaagatccttatcccaaacaacctcaa 191
Query: 664 acccggcgtcttttactgcctggagacattgccgagtgcttctgatatctggcaggccat 723
|||| || ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 190 acccagcatcttttactgcttgaagacattgccgagtgcttctgatatctggcaggccat 131
Query: 724 tgccaagctcaatttcatccttgatccttttgtgggttgcattgttaggatcatagtgat 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tgccaagctcaatttcatccttgatccttttgtgggttgcattgttaggatcatagtgat 71
Query: 784 ccgtaatgcaccactcgtacacggcaaagcactggccaggcttcaacacacgatatatct 843
| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 70 cagtaatgcaccactcatacacagcaaagcactgaccaggcttcaacacacgatatatct 11
Query: 844 ccttgtagca 853
|||| |||||
Sbjct: 10 ccttatagca 1
Score = 111 bits (56), Expect = 2e-022
Identities = 83/92 (90%)
Strand = Plus / Minus
Query: 191 cctagaaacgaataacctcaagcagcaaaacaactgaataaacacaaagctgaacagtta 250
|||| |||| ||||| ||||||||||||||||||| || |||||||||||| ||||||||
Sbjct: 664 cctaaaaaccaataatctcaagcagcaaaacaactaaacaaacacaaagcttaacagtta 605
Query: 251 ctacactgttcgttaactttcctcctacacag 282
|||||||| ||||||| |||| ||||||||||
Sbjct: 604 ctacactgatcgttaattttcttcctacacag 573
>gb|CX609668.1|CX609668 ANR1_14_B09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_14_B09_A002 3', mRNA sequence
Length = 864
Score = 757 bits (382), Expect = 0.0
Identities = 466/494 (94%)
Strand = Plus / Minus
Query: 364 gtgatccaagagctcattccagaagaggcttccgaacaagaaagaagtacattggcgtga 423
|||||||||||||||||||| || |||||| || ||||||||||||||||||| |||
Sbjct: 494 gtgatccaagagctcattccgaaaccggcttctgagcaagaaagaagtacattggtgtgg 435
Query: 424 agatctccttctttccgccctctaccagcccttctgcagccttctccaggaaattagaga 483
||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct: 434 agatctccttctttccgccctctacgagaccttctgcagccttctctaggaaattagaga 375
Query: 484 ccctctcactgccctgcggagcaagaccaacgtactccagggccttgaccattgtgcggg 543
|||||||||||||||| |||||||||||||| || |||| |||||||||||||||||| |
Sbjct: 374 ccctctcactgccctgtggagcaagaccaacatattccaaggccttgaccattgtgcgag 315
Query: 544 taatcatgcgtcccacagaggtcaaacggaagctactcagggagaatcggcttggatcca 603
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 314 taatcatgcgtcccacagaagtcaaacggaagctactcagggaaaatcggcttggatcca 255
Query: 604 agggcaagtaccaaggcaagggagaatcttcagcaagatccttatcccaaacaacctcaa 663
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 254 agggcaagtaccaaggcaagggggaatcttcagcaagatccttatcccaaacaacctcaa 195
Query: 664 acccggcgtcttttactgcctggagacattgccgagtgcttctgatatctggcaggccat 723
|||| || ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 194 acccagcatcttttactgcttgaagacattgccgagtgcttctgatatctggcaggccat 135
Query: 724 tgccaagctcaatttcatccttgatccttttgtgggttgcattgttaggatcatagtgat 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tgccaagctcaatttcatccttgatccttttgtgggttgcattgttaggatcatagtgat 75
Query: 784 ccgtaatgcaccactcgtacacggcaaagcactggccaggcttcaacacacgatatatct 843
| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 74 cagtaatgcaccactcatacacagcaaagcactgaccaggcttcaacacacgatatatct 15
Query: 844 ccttgtagcaacca 857
|||| |||||||||
Sbjct: 14 ccttatagcaacca 1
Score = 111 bits (56), Expect = 2e-022
Identities = 83/92 (90%)
Strand = Plus / Minus
Query: 191 cctagaaacgaataacctcaagcagcaaaacaactgaataaacacaaagctgaacagtta 250
|||| |||| ||||| ||||||||||||||||||| || |||||||||||| ||||||||
Sbjct: 668 cctaaaaaccaataatctcaagcagcaaaacaactaaacaaacacaaagcttaacagtta 609
Query: 251 ctacactgttcgttaactttcctcctacacag 282
|||||||| ||||||| |||| ||||||||||
Sbjct: 608 ctacactgatcgttaattttcttcctacacag 577
>gb|CF486612.1|CF486612 POL1_38_E10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_E10_A002 5', mRNA sequence
Length = 738
Score = 743 bits (375), Expect = 0.0
Identities = 436/455 (95%), Gaps = 6/455 (1%)
Strand = Plus / Minus
Query: 995 tcccctggttatctggtattcgttgttattcaatccggtaactgaagttgagctaaatct 1054
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tcccctggttatctggtactcattgttattcaatccggtaactgaagttgagctaaatct 679
Query: 1055 tgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcattcctgg 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tgcaatttctctcagtggtccacctattccacagcccacatctaaaaccttcattcctgg 619
Query: 1115 tttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaagga 1174
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 618 cttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcgcgtaagga 559
Query: 1175 ttctccattccatctgtgagcaaagtggaaggattcaccccaa-ccatactcatagaagc 1233
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 558 ttctccattccatctgtgagcaaagtggaaggattcaccccaacccatactcatagaagc 499
Query: 1234 tagtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgcttcct 1293
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 498 tagtggctagatcatagtatttattaaccatatcagtatagttggactttcttgcttcct 439
Query: 1294 ccttccctccatagtatccatgatatttctcatactcatcgacggccgacttgacttcca 1353
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 438 ccttccctccatagtaaccatgatatttctcatactcatcgacggccgacttcactccct 379
Query: 1354 ccttgttgatcttccctccgaggccagaagcaagatccagcgctcccgacttggacatc- 1412
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ccttgtcgatcttccctccgaggccagaagcaagatccagcgctcccgacttggacatcg 319
Query: 1413 ----gtgtaggcggccgggacggatcaaatgcacc 1443
|||||||||||||| ||||||| ||||||||
Sbjct: 318 tgtagtgtaggcggccggtacggatcgaatgcacc 284
>gb|BI074628.1|BI074628 IP1_13_B09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 515
Score = 726 bits (366), Expect = 0.0
Identities = 447/474 (94%)
Strand = Plus / Minus
Query: 942 gccttgacaaaatcacatgttccactaattcctgctaaacggttgagctcctttcccctg 1001
||||||||||||||||| |||||||||| |||||| || || ||||||||||||||||||
Sbjct: 512 gccttgacaaaatcacaggttccactaactcctgccaaccgattgagctcctttcccctg 453
Query: 1002 gttatctggtattcgttgttattcaatccggtaactgaagttgagctaaatcttgcaatt 1061
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 452 gttatctggtattcattgttattcaatccagtaactgaagttgagctaaatcttgcaatc 393
Query: 1062 tctctcagtggtccacctattccacagcccacatctaaaaccttcattcctggtttcaaa 1121
|||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 392 tctctcagcggtccacctattccgcagcccacatccaaaaccttcattcctggtttcaag 333
Query: 1122 ccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggattctcca 1181
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 332 ccaagctgcagggcaagaaaatgctcatgacgcttgatgctttcacgcaaggattctcca 273
Query: 1182 ttccatctgtgagcaaagtggaaggattcaccccaaccatactcatagaagctagtggca 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ttccatctgtgagcaaagtggaaggattcaccccaaccatactcatagaagctagtggca 213
Query: 1242 agatcatagtatttattaaccatatcagtatagttggacttccttgcttcctccttccct 1301
|||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 212 agatcataatatttgttaaccatatcagtgtagttggactttcttgcttcctccttccct 153
Query: 1302 ccatagtatccatgatatttctcatactcatcgacggccgacttgacttccaccttgttg 1361
||||| ||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct: 152 ccataatatccatgatatttctcatactcatcgactgccgatttgacttcctccttgttg 93
Query: 1362 atcttccctccgaggccagaagcaagatccagcgctcccgacttggacatcgtg 1415
|||||||||||||||||||| ||||||||||| ||||||| ||| |||||||||
Sbjct: 92 atcttccctccgaggccagatgcaagatccagggctcccgccttcgacatcgtg 39
>gb|CN146158.1|CN146158 WOUND1_38_C11.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_38_C11_A002 3', mRNA sequence
Length = 755
Score = 595 bits (300), Expect = e-168
Identities = 379/404 (93%), Gaps = 1/404 (0%)
Strand = Plus / Minus
Query: 351 tctctctgaaaaggtgatccaagagctcattccagaagaggcttccgaacaagaaagaag 410
|||||||| |||| ||||||||||||||||||| || |||||| ||||||||||||||
Sbjct: 403 tctctctggaaag-tgatccaagagctcattccgaaaccggcttctgaacaagaaagaag 345
Query: 411 tacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagccttctcc 470
|||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 344 tacattggtgtgaagatctccttctttccgccctctacgaaaccttctgcagccttctct 285
Query: 471 aggaaattagagaccctctcactgccctgcggagcaagaccaacgtactccagggccttg 530
||||||||||||||||||||||||||||| |||||||||||||| || |||| |||||||
Sbjct: 284 aggaaattagagaccctctcactgccctgtggagcaagaccaacatattccaaggccttg 225
Query: 531 accattgtgcgggtaatcatgcgtcccacagaggtcaaacggaagctactcagggagaat 590
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 224 accattgtgcgagtaatcatgcgtcccacagaagtcaaacggaagctactcagggaaaat 165
Query: 591 cggcttggatccaagggcaagtaccaaggcaagggagaatcttcagcaagatccttatcc 650
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 164 cggcttggatccaagggcaagtaccaaggcaagggggaatcttcagcaagatccttatcc 105
Query: 651 caaacaacctcaaacccggcgtcttttactgcctggagacattgccgagtgcttctgata 710
||||||||||||||||| | ||||||||||| || ||||||||||||||||||||||||
Sbjct: 104 caaacaacctcaaacccaacatcttttactgcttgaagacattgccgagtgcttctgata 45
Query: 711 tctggcaggccattgccaagctcaatttcatccttgatcctttt 754
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 tctggcaggccattgccaagctcaatttcatccttgatcctttt 1
Score = 111 bits (56), Expect = 2e-022
Identities = 83/92 (90%)
Strand = Plus / Minus
Query: 191 cctagaaacgaataacctcaagcagcaaaacaactgaataaacacaaagctgaacagtta 250
|||| |||| ||||| ||||||||||||||||||| || |||||||||||| ||||||||
Sbjct: 558 cctaaaaaccaataatctcaagcagcaaaacaactaaacaaacacaaagcttaacagtta 499
Query: 251 ctacactgttcgttaactttcctcctacacag 282
|||||||| ||||||| |||| ||||||||||
Sbjct: 498 ctacactgatcgttaattttcttcctacacag 467
>gb|CF486524.1|CF486524 POL1_38_E10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_E10_A002 3', mRNA sequence
Length = 746
Score = 591 bits (298), Expect = e-167
Identities = 374/398 (93%), Gaps = 1/398 (0%)
Strand = Plus / Minus
Query: 351 tctctctgaaaaggtgatccaagagctcattccagaagaggcttccgaacaagaaagaag 410
|||||||| |||| ||||||||||||||||||| || |||||| || |||||||||||
Sbjct: 397 tctctctggaaag-tgatccaagagctcattccgaaaccggcttctgagcaagaaagaag 339
Query: 411 tacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagccttctcc 470
|||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 338 tacattggtgtgaagatctccttctttccgccctctacgagaccttctgcagccttctct 279
Query: 471 aggaaattagagaccctctcactgccctgcggagcaagaccaacgtactccagggccttg 530
||||||||||||||||||||||||||||| |||||||||||||| || |||| |||||||
Sbjct: 278 aggaaattagagaccctctcactgccctgtggagcaagaccaacatattccaaggccttg 219
Query: 531 accattgtgcgggtaatcatgcgtcccacagaggtcaaacggaagctactcagggagaat 590
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 218 accattgtgcgagtaatcatgcgtcccacagaagtcaaacggaagctactcagggaaaat 159
Query: 591 cggcttggatccaagggcaagtaccaaggcaagggagaatcttcagcaagatccttatcc 650
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 158 cggcttggatccaagggcaagtaccaaggcaagggggaatcttcagcaagatccttatcc 99
Query: 651 caaacaacctcaaacccggcgtcttttactgcctggagacattgccgagtgcttctgata 710
||||||||||||||||| || ||||||||||| || ||||||||||||||||||||||||
Sbjct: 98 caaacaacctcaaacccagcatcttttactgcttgaagacattgccgagtgcttctgata 39
Query: 711 tctggcaggccattgccaagctcaatttcatccttgat 748
||||||||||||||||||||||||||||||||||||||
Sbjct: 38 tctggcaggccattgccaagctcaatttcatccttgat 1
Score = 111 bits (56), Expect = 2e-022
Identities = 83/92 (90%)
Strand = Plus / Minus
Query: 191 cctagaaacgaataacctcaagcagcaaaacaactgaataaacacaaagctgaacagtta 250
|||| |||| ||||| ||||||||||||||||||| || |||||||||||| ||||||||
Sbjct: 552 cctaaaaaccaataatctcaagcagcaaaacaactaaacaaacacaaagcttaacagtta 493
Query: 251 ctacactgttcgttaactttcctcctacacag 282
|||||||| ||||||| |||| ||||||||||
Sbjct: 492 ctacactgatcgttaattttcttcctacacag 461
>gb|BG052086.1|BG052086 RHIZ2_5_H11.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 517
Score = 537 bits (271), Expect = e-150
Identities = 319/335 (95%), Gaps = 5/335 (1%)
Strand = Plus / Minus
Query: 1114 gtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaagg 1173
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 517 gtttcaatccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcgcgtaagg 458
Query: 1174 attctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatagaagc 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 attctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatagaagc 398
Query: 1234 tagtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgcttcct 1293
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 397 tagtggctagatcatagtatttattaaccatatcagtatagttggactttcttgcttcct 338
Query: 1294 ccttccctccatagtatccatgatatttctcatactcatcgacggccgacttgacttcca 1353
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 337 ccttccctccatagtaaccatgatatttctcatactcatggacggccgacttgactccct 278
Query: 1354 ccttgttgatcttccctccgaggccagaagcaagatccagcgctcccgacttggacatcg 1413
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ccttgtcgatcttccctccgaggccagaagcaagatccagcgctcccgacttggacatcg 218
Query: 1414 t-----gtaggcggccgggacggatcaaatgcacc 1443
| |||||||||||| ||||||| ||||||||
Sbjct: 217 tgtagtgtaggcggccggtacggatcgaatgcacc 183
>gb|CN146201.1|CN146201 WOUND1_38_C11.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_38_C11_A002 5', mRNA sequence
Length = 607
Score = 517 bits (261), Expect = e-144
Identities = 315/333 (94%), Gaps = 5/333 (1%)
Strand = Plus / Minus
Query: 1116 ttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcacgtaaggat 1175
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 605 ttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatgctttcgcgtaaggat 546
Query: 1176 tctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatagaagcta 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tctccattccatctgtgagcaaagtggaaggattcaccccaaccatactcatagaagcta 486
Query: 1236 gtggcaagatcatagtatttattaaccatatcagtatagttggacttccttgcttcctcc 1295
|||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 485 gtggttagatcatagtatttattaaccatatctgtatagttggactttcttgcttcctcc 426
Query: 1296 ttccctccatagtatccatgatatttctcatactcatcgacggccgacttgacttccacc 1355
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||| || ||
Sbjct: 425 ttccctccatagtaaccatgatatttctcatactcatcgacggccgacttcactccctcc 366
Query: 1356 ttgttgatcttccctccgaggccagaagcaagatccagcgctcccgacttggacatc--- 1412
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ttgtcaatcttccctccgaggccagaagcaagatccagcgctcccgacttggacatcgtg 306
Query: 1413 --gtgtaggcggccgggacggatcaaatgcacc 1443
|||||||||||||| ||||||| ||||||||
Sbjct: 305 tagtgtaggcggccggtacggatcgaatgcacc 273
>gb|CX617157.1|CX617157 GABR1_32_C02.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_32_C02_A002 3', mRNA sequence
Length = 681
Score = 426 bits (215), Expect = e-117
Identities = 279/299 (93%), Gaps = 1/299 (0%)
Strand = Plus / Minus
Query: 351 tctctctgaaaaggtgatccaagagctcattccagaagaggcttccgaacaagaaagaag 410
|||||||| |||| ||||||||||||||||||| || |||||| || |||||||||||
Sbjct: 298 tctctctggaaag-tgatccaagagctcattccgaaaccggcttctgagcaagaaagaag 240
Query: 411 tacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagccttctcc 470
|||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 239 tacattggtgtgaagatctccttctttccgccctctacgagaccttctgcagccttctct 180
Query: 471 aggaaattagagaccctctcactgccctgcggagcaagaccaacgtactccagggccttg 530
||||||||||||||||||||||||||||| |||||||||||||| || |||| |||||||
Sbjct: 179 aggaaattagagaccctctcactgccctgtggagcaagaccaacatattccaaggccttg 120
Query: 531 accattgtgcgggtaatcatgcgtcccacagaggtcaaacggaagctactcagggagaat 590
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 119 accattgtgcgagtaatcatgcgtcccacagaagtcaaacggaagctactcagggaaaat 60
Query: 591 cggcttggatccaagggcaagtaccaaggcaagggagaatcttcagcaagatccttatc 649
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 59 cggcttggatccaagggcaagtaccaaggcaagggggaatcttcagcaagatccttatc 1
Score = 99.6 bits (50), Expect = 8e-019
Identities = 74/82 (90%)
Strand = Plus / Minus
Query: 201 aataacctcaagcagcaaaacaactgaataaacacaaagctgaacagttactacactgtt 260
||||| ||||||||||||||||||| || |||||||||||| |||||||||||||||| |
Sbjct: 443 aataatctcaagcagcaaaacaactaaacaaacacaaagcttaacagttactacactgat 384
Query: 261 cgttaactttcctcctacacag 282
|||||| |||| |||||||||
Sbjct: 383 cgttaattttctccctacacag 362
>gb|CX609750.1|CX609750 ANR1_14_B09.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_14_B09_A002 5', mRNA sequence
Length = 508
Score = 355 bits (179), Expect = 8e-096
Identities = 224/239 (93%), Gaps = 5/239 (2%)
Strand = Plus / Minus
Query: 1210 caccccaaccatactcatagaagctagtggcaagatcatagtatttattaaccatatcag 1269
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 508 caccccaaccatactcatagaagctagtggctagatcatagtatttattaaccatatcag 449
Query: 1270 tatagttggacttccttgcttcctccttccctccatagtatccatgatatttctcatact 1329
||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 448 tatagttggactttctcgcttcctccttccctccatagtaaccatgatatttctcatact 389
Query: 1330 catcgacggccgacttgacttccaccttgttgatcttccctccgaggccagaagcaagat 1389
|||||||||||||||| ||| || |||||| |||||||||||||||||||||||||||||
Sbjct: 388 catcgacggccgacttcactccctccttgtcgatcttccctccgaggccagaagcaagat 329
Query: 1390 ccagcgctcccgacttggacatcg-----tgtaggcggccgggacggatcaaatgcacc 1443
|||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||
Sbjct: 328 ccagcgctcccgacttggacatcgtgtagtgtaggcggccggtacggatcgaatgcacc 270
>gb|BG051876.1|BG051876 RHIZ2_5_H11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 469
Score = 343 bits (173), Expect = 3e-092
Identities = 240/261 (91%), Gaps = 1/261 (0%)
Strand = Plus / Minus
Query: 351 tctctctgaaaaggtgatccaagagctcattccagaagaggcttccgaacaagaaagaag 410
|||||||| |||| ||||||||||| |||||| || |||||| || |||||||||||
Sbjct: 260 tctctctggaaag-tgatccaagagatcattctgaaaccggcttctgagcaagaaagaag 202
Query: 411 tacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagccttctcc 470
|||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 201 tacattggtgtgaagatctccttctttccgccctctacgagaccttctgcagccttctct 142
Query: 471 aggaaattagagaccctctcactgccctgcggagcaagaccaacgtactccagggccttg 530
||||||||||||||||||||||||||||| |||||||||||||| || |||| |||||||
Sbjct: 141 aggaaattagagaccctctcactgccctgtggagcaagaccaacatattccaaggccttg 82
Query: 531 accattgtgcgggtaatcatgcgtcccacagaggtcaaacggaagctactcagggagaat 590
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 81 accattgtgcgagtaatcatgcgtcccacagaagtcaaacggaagctactcagggaaaat 22
Query: 591 cggcttggatccaagggcaag 611
|||||||||||||||||||||
Sbjct: 21 cggcttggatccaagggcaag 1
Score = 111 bits (56), Expect = 2e-022
Identities = 83/92 (90%)
Strand = Plus / Minus
Query: 191 cctagaaacgaataacctcaagcagcaaaacaactgaataaacacaaagctgaacagtta 250
|||| |||| ||||| ||||||||||||||||||| || |||||||||||| ||||||||
Sbjct: 417 cctaaaaaccaataatctcaagcagcaaaacaactaaacaaacacaaagcttaacagtta 358
Query: 251 ctacactgttcgttaactttcctcctacacag 282
|||||||| ||||||| |||| ||||||||||
Sbjct: 357 ctacactgatcgttaattttcttcctacacag 326
>gb|CX611518.1|CX611518 ANR1_25_D05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_25_D05_A002 3', mRNA sequence
Length = 808
Score = 333 bits (168), Expect = 3e-089
Identities = 267/300 (89%)
Strand = Plus / Minus
Query: 386 aagaggcttccgaacaagaaagaagtacattggcgtgaagatctccttctttccgccctc 445
||||||||||||| ||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct: 303 aagaggcttccgagcaagaaagaagtacattggtgtgaagatctccttcttcccaccctc 244
Query: 446 taccagcccttctgcagccttctccaggaaattagagaccctctcactgccctgcggagc 505
||| || ||||||||||||||||| |||||||| ||||||||||||||||| || || ||
Sbjct: 243 tacaagaccttctgcagccttctctaggaaattggagaccctctcactgccttgtggggc 184
Query: 506 aagaccaacgtactccagggccttgaccattgtgcgggtaatcatgcgtcccacagaggt 565
|||||||| ||| |||| ||||||||||| ||||| |||||||||||||||||||| ||
Sbjct: 183 aagaccaatgtattccaatgccttgaccatagtgcgagtaatcatgcgtcccacagacgt 124
Query: 566 caaacggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggcaaggg 625
||||||||| ||| ||| ||| |||||||| |||||||| ||||||||||| ||||||||
Sbjct: 123 caaacggaaactattcaaggaaaatcggctcggatccaaaggcaagtaccagggcaaggg 64
Query: 626 agaatcttcagcaagatccttatcccaaacaacctcaaacccggcgtcttttactgcctg 685
||||| ||||| ||||||||||||||| |||||||||| || || ||||| ||||||||
Sbjct: 63 ggaatcctcagctagatccttatcccaagcaacctcaaaacctgcatctttgactgcctg 4
>gb|BG948190.1|BG948190 IP1_10_E01.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 555
Score = 276 bits (139), Expect = 6e-072
Identities = 194/211 (91%), Gaps = 1/211 (0%)
Strand = Plus / Minus
Query: 351 tctctctgaaaaggtgatccaagagctcattccagaagaggcttccgaacaagaaagaag 410
|||||||| |||| ||||||||||||||||||| || |||||| || |||||||||||
Sbjct: 210 tctctctggaaag-tgatccaagagctcattccgaaaccggcttctgagcaagaaagaag 152
Query: 411 tacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagccttctcc 470
|||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 151 tacattggtgtgaagatctccttctttccgccctctacgagaccttctgcagccttctct 92
Query: 471 aggaaattagagaccctctcactgccctgcggagcaagaccaacgtactccagggccttg 530
||||||||||||||||||||||||||||| |||||||||||||| || |||| |||||||
Sbjct: 91 aggaaattagagaccctctcactgccctgtggagcaagaccaacatattccaaggccttg 32
Query: 531 accattgtgcgggtaatcatgcgtcccacag 561
||||||||||| |||||||||||||||||||
Sbjct: 31 accattgtgcgagtaatcatgcgtcccacag 1
Score = 111 bits (56), Expect = 2e-022
Identities = 83/92 (90%)
Strand = Plus / Minus
Query: 191 cctagaaacgaataacctcaagcagcaaaacaactgaataaacacaaagctgaacagtta 250
|||| |||| ||||| ||||||||||||||||||| || |||||||||||| ||||||||
Sbjct: 365 cctaaaaaccaataatctcaagcagcaaaacaactaaacaaacacaaagcttaacagtta 306
Query: 251 ctacactgttcgttaactttcctcctacacag 282
|||||||| ||||||| |||| ||||||||||
Sbjct: 305 ctacactgatcgttaattttcttcctacacag 274
>gb|CW252312.1|CW252312 104_715_11224427_116_35094_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224427, DNA
sequence
Length = 663
Score = 266 bits (134), Expect = 6e-069
Identities = 149/154 (96%)
Strand = Plus / Plus
Query: 706 tgatatctggcaggccattgccaagctcaatttcatccttgatccttttgtgggttgcat 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgatatctggcaggccattgccaagctcaatttcatccttgatccttttgtgggttgcat 60
Query: 766 tgttaggatcatagtgatccgtaatgcaccactcgtacacggcaaagcactggccaggct 825
||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 61 tgttaggatcatagtgatcagtaatgcaccactcatacacagcaaagcactgaccaggct 120
Query: 826 tcaacacacgatatatctccttgtagcaaccaac 859
|||||||||||||||||||||| |||||||||||
Sbjct: 121 tcaacacacgatatatctccttatagcaaccaac 154
Score = 135 bits (68), Expect = 1e-029
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 858 actggatcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtca 917
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct: 255 actggatcaggtgcatgacatgtcgcctcaatggcataaacagcatcgaaagtgttgtca 314
Query: 918 tcgaacggcatcttcatgaagtccgcct 945
||||||||||| ||||||||||| ||||
Sbjct: 315 tcgaacggcattttcatgaagtctgcct 342
>gb|CW024829.1|CW024829 104_226_10487799_114_30497 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10487799, DNA
sequence
Length = 584
Score = 260 bits (131), Expect = 4e-067
Identities = 152/159 (95%)
Strand = Plus / Minus
Query: 657 acctcaaacccggcgtcttttactgcctggagacattgccgagtgcttctgatatctggc 716
||||||||||| || ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 159 acctcaaacccagcatcttttactgcttgaagacattgccgagtgcttctgatatctggc 100
Query: 717 aggccattgccaagctcaatttcatccttgatccttttgtgggttgcattgttaggatca 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 aggccattgccaagctcaatttcatccttgatccttttgtgggttgcattgttaggatca 40
Query: 777 tagtgatccgtaatgcaccactcgtacacggcaaagcac 815
|||||||| |||||||||||||| ||||| |||||||||
Sbjct: 39 tagtgatcagtaatgcaccactcatacacagcaaagcac 1
Score = 226 bits (114), Expect = 5e-057
Identities = 126/130 (96%)
Strand = Plus / Minus
Query: 531 accattgtgcgggtaatcatgcgtcccacagaggtcaaacggaagctactcagggagaat 590
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 463 accattgtgcgagtaatcatgcgtcccacagaagtcaaacggaagctactcagggaaaat 404
Query: 591 cggcttggatccaagggcaagtaccaaggcaagggagaatcttcagcaagatccttatcc 650
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 403 cggcttggatccaagggcaagtaccaaggcaagggggaatcttcagcaagatccttatcc 344
Query: 651 caaacaacct 660
||||||||||
Sbjct: 343 caaacaacct 334
>gb|BG948180.1|BG948180 IP1_10_D02.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 553
Score = 260 bits (131), Expect = 4e-067
Identities = 186/203 (91%), Gaps = 1/203 (0%)
Strand = Plus / Minus
Query: 351 tctctctgaaaaggtgatccaagagctcattccagaagaggcttccgaacaagaaagaag 410
|||||||| |||| ||||||||||||||||||| || |||||| || |||||||||||
Sbjct: 202 tctctctggaaag-tgatccaagagctcattccgaaaccggcttctgagcaagaaagaag 144
Query: 411 tacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagccttctcc 470
|||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 143 tacattggtgtgaagatctccttctttccgccctctacgagaccttctgcagccttctct 84
Query: 471 aggaaattagagaccctctcactgccctgcggagcaagaccaacgtactccagggccttg 530
||||||||||||||||||||||||||||| |||||||||||||| || |||| |||||||
Sbjct: 83 aggaaattagagaccctctcactgccctgtggagcaagaccaacatattccaaggccttg 24
Query: 531 accattgtgcgggtaatcatgcg 553
||||||||||| |||||||||||
Sbjct: 23 accattgtgcgagtaatcatgcg 1
Score = 111 bits (56), Expect = 2e-022
Identities = 83/92 (90%)
Strand = Plus / Minus
Query: 191 cctagaaacgaataacctcaagcagcaaaacaactgaataaacacaaagctgaacagtta 250
|||| |||| ||||| ||||||||||||||||||| || |||||||||||| ||||||||
Sbjct: 357 cctaaaaaccaataatctcaagcagcaaaacaactaaacaaacacaaagcttaacagtta 298
Query: 251 ctacactgttcgttaactttcctcctacacag 282
|||||||| ||||||| |||| ||||||||||
Sbjct: 297 ctacactgatcgttaattttcttcctacacag 266
>gb|BI141282.1|BI141282 IP1_53_F11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 400
Score = 252 bits (127), Expect = 9e-065
Identities = 192/211 (90%), Gaps = 2/211 (0%)
Strand = Plus / Minus
Query: 351 tctctctgaaaaggtgatccaagagctcattccagaagaggcttccgaacaagaaagaag 410
|||||||| |||| ||||||||||||||||||| || |||||| || |||||||||||
Sbjct: 213 tctctctggaaag-tgatccaagagctcattccgaaaccggcttctgagcaagaaagaag 155
Query: 411 tacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagccttctcc 470
|||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 154 tacattggtgtgaagatctccttctttccgccctctacgagaccttctgcagccttctct 95
Query: 471 aggaaattagaga-ccctctcactgccctgcggagcaagaccaacgtactccagggcctt 529
||||||||||||| |||||||||||||||| |||||||||||||| || |||| ||||||
Sbjct: 94 aggaaattagagacccctctcactgccctgtggagcaagaccaacatattccaaggcctt 35
Query: 530 gaccattgtgcgggtaatcatgcgtcccaca 560
|||||||||||| |||||||||| |||||||
Sbjct: 34 gaccattgtgcgagtaatcatgcctcccaca 4
Score = 111 bits (56), Expect = 2e-022
Identities = 83/92 (90%)
Strand = Plus / Minus
Query: 191 cctagaaacgaataacctcaagcagcaaaacaactgaataaacacaaagctgaacagtta 250
|||| |||| ||||| ||||||||||||||||||| || |||||||||||| ||||||||
Sbjct: 368 cctaaaaaccaataatctcaagcagcaaaacaactaaacaaacacaaagcttaacagtta 309
Query: 251 ctacactgttcgttaactttcctcctacacag 282
|||||||| ||||||| |||| ||||||||||
Sbjct: 308 ctacactgatcgttaattttcttcctacacag 277
>gb|CW391886.1|CW391886 fsbb001f078d24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f078d24, DNA
sequence
Length = 735
Score = 242 bits (122), Expect = 8e-062
Identities = 167/182 (91%)
Strand = Plus / Plus
Query: 678 actgcctggagacattgccgagtgcttctgatatctggcaggccattgccaagctcaatt 737
|||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 54 actgcctgaagacattgcctagtgcttctgatatctggtaggccattgccaagctcaatt 113
Query: 738 tcatccttgatccttttgtgggttgcattgttaggatcatagtgatccgtaatgcaccac 797
||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 114 tcatccttgatccttttatgggttgcgttgtttggatcatagtgatcagtaatgcaccac 173
Query: 798 tcgtacacggcaaagcactggccaggcttcaacacacgatatatctccttgtagcaacca 857
|| || || ||||||||||| || |||||||||||||| ||||||||||| ||||| |||
Sbjct: 174 tcatatacagcaaagcactgaccgggcttcaacacacggtatatctccttatagcagcca 233
Query: 858 ac 859
||
Sbjct: 234 ac 235
Score = 121 bits (61), Expect = 2e-025
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 861 ggatcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtcatcg 920
||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct: 343 ggatcaggtgcatgacatgttgcctcaattgcataaacagcatcaaaagtgttatcatca 402
Query: 921 aacggcatcttcatgaagtccgcct 945
|| ||||||||||||||||| ||||
Sbjct: 403 aatggcatcttcatgaagtctgcct 427
>gb|CN145583.1|CN145583 WOUND1_33_H10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_33_H10_A002 5', mRNA sequence
Length = 433
Score = 240 bits (121), Expect = 3e-061
Identities = 160/173 (92%), Gaps = 5/173 (2%)
Strand = Plus / Minus
Query: 1276 tggacttccttgcttcctccttccctccatagtatccatgatatttctcatactcatcga 1335
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 433 tggactttcttgcttcctccttccctccatagtaaccatgatatttctcatactcatcga 374
Query: 1336 cggccgacttgacttccaccttgttgatcttccctccgaggccagaagcaagatccagcg 1395
|||||||||| ||| || |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 373 cggccgacttcactccctccttgtcgatcttccctccgaggccagaagcaagatccagcg 314
Query: 1396 ctcccgacttggacatc-----gtgtaggcggccgggacggatcaaatgcacc 1443
||||||||||||||||| |||||||||||||| ||||||| ||||||||
Sbjct: 313 ctcccgacttggacatcgtgtagtgtaggcggccggtacggatcgaatgcacc 261
>gb|BG948491.1|BG948491 IP1_10_D02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 421
Score = 200 bits (101), Expect = 3e-049
Identities = 137/149 (91%), Gaps = 5/149 (3%)
Strand = Plus / Minus
Query: 1300 ctccatagtatccatgatatttctcatactcatcgacggccgacttgacttccaccttgt 1359
|||||||||| ||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct: 421 ctccatagtaaccatgatatttctcatactcatcgacggccgacttcactccctccttgt 362
Query: 1360 tgatcttccctccgaggccagaagcaagatccagcgctcccgacttggacatc-----gt 1414
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 361 cgatcttccctccgaggccagaagcaagatccagcgctcccgacttggacatcgtgtagt 302
Query: 1415 gtaggcggccgggacggatcaaatgcacc 1443
|||||||||||| ||||||| ||||||||
Sbjct: 301 gtaggcggccggtacggatcgaatgcacc 273
>gb|CW097070.1|CW097070 104_463_11002253_148_34358_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002253, DNA
sequence
Length = 662
Score = 180 bits (91), Expect = 3e-043
Identities = 132/145 (91%), Gaps = 3/145 (2%)
Strand = Plus / Minus
Query: 1453 ggcgtgttgcagtgcgaggagcggcgaattcggcggggcgcgtcccgggacgccgcgggc 1512
|||||| ||||| ||||||||||| |||| ||||||||||||||||||| ||| |||||
Sbjct: 290 ggcgtgctgcagcgcgaggagcggtgaatccggcggggcgcgtcccggggcgcaacgggc 231
Query: 1513 ggcgggatctggtgcctgccgccggctagatcgggctagggctcgcgctcggcggtggtg 1572
|||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 230 ggcgggatctggcgcctgccgccggcgagatcgggctagggctcgcgcgcggcggtggtg 171
Query: 1573 ggagacgacgaggtggaggtggtgg 1597
||| |||||||||||||||||||
Sbjct: 170 gga---gacgaggtggaggtggtgg 149
>gb|CW294831.1|CW294831 104_775_11415393_116_35774_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11415393, DNA
sequence
Length = 704
Score = 180 bits (91), Expect = 3e-043
Identities = 132/145 (91%), Gaps = 3/145 (2%)
Strand = Plus / Minus
Query: 1453 ggcgtgttgcagtgcgaggagcggcgaattcggcggggcgcgtcccgggacgccgcgggc 1512
|||||| ||||| ||||||||||| |||| ||||||||||||||||||| ||| |||||
Sbjct: 512 ggcgtgctgcagcgcgaggagcggtgaatccggcggggcgcgtcccggggcgcaacgggc 453
Query: 1513 ggcgggatctggtgcctgccgccggctagatcgggctagggctcgcgctcggcggtggtg 1572
|||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 452 ggcgggatctggcgcctgccgccggcgagatcgggctagggctcgcgcgcggcggtggtg 393
Query: 1573 ggagacgacgaggtggaggtggtgg 1597
|||| ||||||||||||||||||
Sbjct: 392 ggag---acgaggtggaggtggtgg 371
>gb|CW477444.1|CW477444 fsbb001f234m15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f234m15, DNA
sequence
Length = 673
Score = 180 bits (91), Expect = 3e-043
Identities = 132/145 (91%), Gaps = 3/145 (2%)
Strand = Plus / Minus
Query: 1453 ggcgtgttgcagtgcgaggagcggcgaattcggcggggcgcgtcccgggacgccgcgggc 1512
|||||| ||||| ||||||||||| |||| ||||||||||||||||||| ||| |||||
Sbjct: 542 ggcgtgctgcagcgcgaggagcggtgaatccggcggggcgcgtcccggggcgcaacgggc 483
Query: 1513 ggcgggatctggtgcctgccgccggctagatcgggctagggctcgcgctcggcggtggtg 1572
|||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 482 ggcgggatctggcgcctgccgccggcgagatcgggctagggctcgcgcgcggcggtggtg 423
Query: 1573 ggagacgacgaggtggaggtggtgg 1597
||| |||||||||||||||||||
Sbjct: 422 gga---gacgaggtggaggtggtgg 401
>gb|CW477445.1|CW477445 fsbb001f234m15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f234m15, DNA
sequence
Length = 711
Score = 180 bits (91), Expect = 3e-043
Identities = 132/145 (91%), Gaps = 3/145 (2%)
Strand = Plus / Plus
Query: 1453 ggcgtgttgcagtgcgaggagcggcgaattcggcggggcgcgtcccgggacgccgcgggc 1512
|||||| ||||| ||||||||||| |||| ||||||||||||||||||| ||| |||||
Sbjct: 351 ggcgtgctgcagcgcgaggagcggtgaatccggcggggcgcgtcccggggcgcaacgggc 410
Query: 1513 ggcgggatctggtgcctgccgccggctagatcgggctagggctcgcgctcggcggtggtg 1572
|||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 411 ggcgggatctggcgcctgccgccggcgagatcgggctagggctcgcgcgcggcggtggtg 470
Query: 1573 ggagacgacgaggtggaggtggtgg 1597
||| |||||||||||||||||||
Sbjct: 471 gga---gacgaggtggaggtggtgg 492
>gb|CW491399.1|CW491399 fsbb001f281e01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f281e01, DNA
sequence
Length = 268
Score = 180 bits (91), Expect = 3e-043
Identities = 132/145 (91%), Gaps = 3/145 (2%)
Strand = Plus / Minus
Query: 1453 ggcgtgttgcagtgcgaggagcggcgaattcggcggggcgcgtcccgggacgccgcgggc 1512
|||||| ||||| ||||||||||| |||| ||||||||||||||||||| ||| |||||
Sbjct: 238 ggcgtgctgcagcgcgaggagcggtgaatccggcggggcgcgtcccggggcgcaacgggc 179
Query: 1513 ggcgggatctggtgcctgccgccggctagatcgggctagggctcgcgctcggcggtggtg 1572
|||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 178 ggcgggatctggcgcctgccgccggcgagatcgggctagggctcgcgcgcggcggtggtg 119
Query: 1573 ggagacgacgaggtggaggtggtgg 1597
||| |||||||||||||||||||
Sbjct: 118 gga---gacgaggtggaggtggtgg 97
>gb|AW287677.2|AW287677 LG1_271_A09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 393
Score = 180 bits (91), Expect = 3e-043
Identities = 132/145 (91%), Gaps = 3/145 (2%)
Strand = Plus / Minus
Query: 1453 ggcgtgttgcagtgcgaggagcggcgaattcggcggggcgcgtcccgggacgccgcgggc 1512
|||||| ||||| ||||||||||| |||| ||||||||||||||||||| ||| |||||
Sbjct: 151 ggcgtgctgcagcgcgaggagcggtgaatccggcggggcgcgtcccggggcgcaacgggc 92
Query: 1513 ggcgggatctggtgcctgccgccggctagatcgggctagggctcgcgctcggcggtggtg 1572
|||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 91 ggcgggatctggcgcctgccgccggcgagatcgggctagggctcgcgcgcggcggtggtg 32
Query: 1573 ggagacgacgaggtggaggtggtgg 1597
||| |||||||||||||||||||
Sbjct: 31 gga---gacgaggtggaggtggtgg 10
>gb|CD221282.1|CD221282 CCC1_74_C08.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_74_C08_A007 5', mRNA sequence
Length = 721
Score = 180 bits (91), Expect = 3e-043
Identities = 132/145 (91%), Gaps = 3/145 (2%)
Strand = Plus / Minus
Query: 1453 ggcgtgttgcagtgcgaggagcggcgaattcggcggggcgcgtcccgggacgccgcgggc 1512
|||||| ||||| ||||||||||| |||| ||||||||||||||||||| ||| |||||
Sbjct: 150 ggcgtgctgcagcgcgaggagcggtgaatccggcggggcgcgtcccggggcgcgacgggc 91
Query: 1513 ggcgggatctggtgcctgccgccggctagatcgggctagggctcgcgctcggcggtggtg 1572
|||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 90 ggcgggatctggcgcctgccgccggcgagatcgggctagggctcgcgcgcggcggtggtg 31
Query: 1573 ggagacgacgaggtggaggtggtgg 1597
||| |||||||||||||||||||
Sbjct: 30 gga---gacgaggtggaggtggtgg 9
>gb|CN130770.1|CN130770 RHOH1_43_E05.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_43_E05_A002 5', mRNA sequence
Length = 884
Score = 180 bits (91), Expect = 3e-043
Identities = 132/145 (91%), Gaps = 3/145 (2%)
Strand = Plus / Minus
Query: 1453 ggcgtgttgcagtgcgaggagcggcgaattcggcggggcgcgtcccgggacgccgcgggc 1512
|||||| ||||| ||||||||||| |||| ||||||||||||||||||| ||| |||||
Sbjct: 151 ggcgtgctgcagcgcgaggagcggtgaatccggcggggcgcgtcccggggcgcaacgggc 92
Query: 1513 ggcgggatctggtgcctgccgccggctagatcgggctagggctcgcgctcggcggtggtg 1572
|||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 91 ggcgggatctggcgcctgccgccggcgagatcgggctagggctcgcgcgcggcggtggtg 32
Query: 1573 ggagacgacgaggtggaggtggtgg 1597
||| |||||||||||||||||||
Sbjct: 31 gga---gacgaggtggaggtggtgg 10
>gb|BG051067.1|BG051067 FM1_55_H09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 565
Score = 174 bits (88), Expect = 2e-041
Identities = 118/128 (92%)
Strand = Plus / Minus
Query: 1453 ggcgtgttgcagtgcgaggagcggcgaattcggcggggcgcgtcccgggacgccgcgggc 1512
|||||| ||||| ||||||||||| |||| ||||||||||||||||||| ||| |||||
Sbjct: 129 ggcgtgctgcagcgcgaggagcggtgaatccggcggggcgcgtcccggggcgcaacgggc 70
Query: 1513 ggcgggatctggtgcctgccgccggctagatcgggctagggctcgcgctcggcggtggtg 1572
|||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 69 ggcgggatctggcgcctgccgccggcgagatcgggctagggctcgcgcgcggcggtggtg 10
Query: 1573 ggagacga 1580
||||||||
Sbjct: 9 ggagacga 2
>gb|CL182361.1|CL182361 104_393_10897375_148_31921_367 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10897375, DNA
sequence
Length = 694
Score = 168 bits (85), Expect = 1e-039
Identities = 118/129 (91%), Gaps = 5/129 (3%)
Strand = Plus / Plus
Query: 1326 tactcatcgacggccgacttgacttccaccttgttgatcttccctccgaggccagaagca 1385
|||||||||||||||||||| ||| || |||||| |||||||||||||||||||||||||
Sbjct: 425 tactcatcgacggccgacttcactccctccttgtcgatcttccctccgaggccagaagca 484
Query: 1386 agatccagcgctcccgacttggacatc-----gtgtaggcggccgggacggatcaaatgc 1440
||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||
Sbjct: 485 agatccagcgctcccgacttggacatcgtgtagtgtaggcggccggtacggatcgaatgc 544
Query: 1441 acctgcaat 1449
|||||||||
Sbjct: 545 acctgcaat 553
>gb|CW167063.1|CW167063 104_576_11153401_148_37468_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153401, DNA
sequence
Length = 658
Score = 168 bits (85), Expect = 1e-039
Identities = 118/129 (91%), Gaps = 5/129 (3%)
Strand = Plus / Plus
Query: 1326 tactcatcgacggccgacttgacttccaccttgttgatcttccctccgaggccagaagca 1385
|||||||||||||||||||| ||| || |||||| |||||||||||||||||||||||||
Sbjct: 432 tactcatcgacggccgacttcactccctccttgtcgatcttccctccgaggccagaagca 491
Query: 1386 agatccagcgctcccgacttggacatc-----gtgtaggcggccgggacggatcaaatgc 1440
||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||
Sbjct: 492 agatccagcgctcccgacttggacatcgtgtagtgtaggcggccggtacggatcgaatgc 551
Query: 1441 acctgcaat 1449
|||||||||
Sbjct: 552 acctgcaat 560
>gb|CW468212.1|CW468212 fsbb001f220e08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f220e08, DNA
sequence
Length = 658
Score = 168 bits (85), Expect = 1e-039
Identities = 118/129 (91%), Gaps = 5/129 (3%)
Strand = Plus / Minus
Query: 1326 tactcatcgacggccgacttgacttccaccttgttgatcttccctccgaggccagaagca 1385
|||||||||||||||||||| ||| || |||||| |||||||||||||||||||||||||
Sbjct: 386 tactcatcgacggccgacttcactccctccttgtcgatcttccctccgaggccagaagca 327
Query: 1386 agatccagcgctcccgacttggacatc-----gtgtaggcggccgggacggatcaaatgc 1440
||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||
Sbjct: 326 agatccagcgctcccgacttggacatcgtgtagtgtaggcggccggtacggatcgaatgc 267
Query: 1441 acctgcaat 1449
|||||||||
Sbjct: 266 acctgcaat 258
>gb|CW133418.1|CW133418 104_517_11116752_148_34815_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116752, DNA
sequence
Length = 493
Score = 163 bits (82), Expect = 6e-038
Identities = 112/122 (91%)
Strand = Plus / Plus
Query: 1453 ggcgtgttgcagtgcgaggagcggcgaattcggcggggcgcgtcccgggacgccgcgggc 1512
|||||| ||||| ||||||||||| |||| ||||||||||||||||||| ||| |||||
Sbjct: 372 ggcgtgctgcagcgcgaggagcggtgaatccggcggggcgcgtcccggggcgcaacgggc 431
Query: 1513 ggcgggatctggtgcctgccgccggctagatcgggctagggctcgcgctcggcggtggtg 1572
|||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 432 ggcgggatctggcgcctgccgccggcgagatcgggctagggctcgcgcgcggcggtggtg 491
Query: 1573 gg 1574
||
Sbjct: 492 gg 493
>gb|CW294832.1|CW294832 104_775_11415393_148_35775_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11415393, DNA
sequence
Length = 656
Score = 163 bits (82), Expect = 6e-038
Identities = 112/122 (91%)
Strand = Plus / Plus
Query: 1453 ggcgtgttgcagtgcgaggagcggcgaattcggcggggcgcgtcccgggacgccgcgggc 1512
|||||| ||||| ||||||||||| |||| ||||||||||||||||||| ||| |||||
Sbjct: 535 ggcgtgctgcagcgcgaggagcggtgaatccggcggggcgcgtcccggggcgcaacgggc 594
Query: 1513 ggcgggatctggtgcctgccgccggctagatcgggctagggctcgcgctcggcggtggtg 1572
|||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 595 ggcgggatctggcgcctgccgccggcgagatcgggctagggctcgcgcgcggcggtggtg 654
Query: 1573 gg 1574
||
Sbjct: 655 gg 656
>gb|CW386868.1|CW386868 fsbb001f070p13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f070p13, DNA
sequence
Length = 695
Score = 161 bits (81), Expect = 2e-037
Identities = 87/89 (97%)
Strand = Plus / Minus
Query: 1101 accttcattcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatg 1160
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 accttcattcctggcttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatg 376
Query: 1161 ctttcacgtaaggattctccattccatct 1189
||||| |||||||||||||||||||||||
Sbjct: 375 ctttcgcgtaaggattctccattccatct 347
Score = 141 bits (71), Expect = 2e-031
Identities = 74/75 (98%)
Strand = Plus / Minus
Query: 1188 ctgtgagcaaagtggaaggattcaccccaaccatactcatagaagctagtggcaagatca 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 181 ctgtgagcaaagtggaaggattcaccccaaccatactcatagaagctagtggctagatca 122
Query: 1248 tagtatttattaacc 1262
|||||||||||||||
Sbjct: 121 tagtatttattaacc 107
Score = 105 bits (53), Expect = 1e-020
Identities = 56/57 (98%)
Strand = Plus / Minus
Query: 1048 taaatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaacct 1104
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 575 taaatcttgcaatttctctcagtggtccacgtattccacagcccacatctaaaacct 519
>gb|CW142834.1|CW142834 104_534_11137080_148_34945_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137080, DNA
sequence
Length = 582
Score = 143 bits (72), Expect = 6e-032
Identities = 93/100 (93%)
Strand = Plus / Minus
Query: 434 ctttccgccctctaccagcccttctgcagccttctccaggaaattagagaccctctcact 493
||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 172 ctttccgccctctacgagaccttctgcagccttctctaggaaattagagaccctctcact 113
Query: 494 gccctgcggagcaagaccaacgtactccagggccttgacc 533
|||||| |||||||||||||| || |||| ||||||||||
Sbjct: 112 gccctgtggagcaagaccaacatattccaaggccttgacc 73
Score = 85.7 bits (43), Expect = 1e-014
Identities = 64/71 (90%)
Strand = Plus / Minus
Query: 364 gtgatccaagagctcattccagaagaggcttccgaacaagaaagaagtacattggcgtga 423
|||||||||||||||||||| || |||||| || ||||||||||||||||||| ||||
Sbjct: 369 gtgatccaagagctcattccgaaaccggcttctgagcaagaaagaagtacattggtgtga 310
Query: 424 agatctccttc 434
|||||||||||
Sbjct: 309 agatctccttc 299
Score = 63.9 bits (32), Expect = 4e-008
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 235 caaagctgaacagttactacactgttcgttaactttcctcctacacag 282
||||||| |||||||||||||||| ||||||| |||| ||||||||||
Sbjct: 582 caaagcttaacagttactacactgatcgttaattttcttcctacacag 535
>gb|BG051066.1|BG051066 FM1_55_H08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 457
Score = 143 bits (72), Expect = 6e-032
Identities = 114/128 (89%)
Strand = Plus / Minus
Query: 1453 ggcgtgttgcagtgcgaggagcggcgaattcggcggggcgcgtcccgggacgccgcgggc 1512
|||||| ||||| ||||||| ||| |||| ||||||||||||||||||| ||| |||||
Sbjct: 129 ggcgtgctgcagcgcgaggaccggtgaatccggcggggcgcgtcccggggcgcaacgggc 70
Query: 1513 ggcgggatctggtgcctgccgccggctagatcgggctagggctcgcgctcggcggtggtg 1572
|||||||||||| |||| |||||||| ||||||||||||||||||||| || ||| ||||
Sbjct: 69 ggcgggatctggcgcctaccgccggcgagatcgggctagggctcgcgcgcgccggcggtg 10
Query: 1573 ggagacga 1580
||||||||
Sbjct: 9 ggagacga 2
>gb|BZ691891.1|BZ691891 SP__Ba0013N22.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0013N22 3', DNA sequence
Length = 884
Score = 141 bits (71), Expect = 2e-031
Identities = 89/95 (93%)
Strand = Plus / Plus
Query: 566 caaacggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggcaaggg 625
|||||||| | |||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 110 caaacggagggtactgagggaaaatcggcttggatccaagggcaagtaccaaggtaaggg 169
Query: 626 agaatcttcagcaagatccttatcccaaacaacct 660
||||||||||||||||||||||||||||||||||
Sbjct: 170 ggaatcttcagcaagatccttatcccaaacaacct 204
>gb|CW785636.1|CW785636 SP__Ba0013N22.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0013N22 3', DNA sequence
Length = 674
Score = 141 bits (71), Expect = 2e-031
Identities = 89/95 (93%)
Strand = Plus / Plus
Query: 566 caaacggaagctactcagggagaatcggcttggatccaagggcaagtaccaaggcaaggg 625
|||||||| | |||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 21 caaacggagggtactgagggaaaatcggcttggatccaagggcaagtaccaaggtaaggg 80
Query: 626 agaatcttcagcaagatccttatcccaaacaacct 660
||||||||||||||||||||||||||||||||||
Sbjct: 81 ggaatcttcagcaagatccttatcccaaacaacct 115
>gb|CF432357.1|CF432357 NIT1_13_H09.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_13_H09_A002 3', mRNA sequence
Length = 471
Score = 141 bits (71), Expect = 2e-031
Identities = 108/119 (90%), Gaps = 1/119 (0%)
Strand = Plus / Minus
Query: 351 tctctctgaaaaggtgatccaagagctcattccagaagaggcttccgaacaagaaagaag 410
|||||||| |||| ||||||||||||||||||| || |||||| || |||||||||||
Sbjct: 119 tctctctggaaag-tgatccaagagctcattccgaaaccggcttctgagcaagaaagaag 61
Query: 411 tacattggcgtgaagatctccttctttccgccctctaccagcccttctgcagccttctc 469
|||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 60 tacattggtgtgaagatctccttctttccgccctctacgagaccttctgcagccttctc 2
Score = 111 bits (56), Expect = 2e-022
Identities = 83/92 (90%)
Strand = Plus / Minus
Query: 191 cctagaaacgaataacctcaagcagcaaaacaactgaataaacacaaagctgaacagtta 250
|||| |||| ||||| ||||||||||||||||||| || |||||||||||| ||||||||
Sbjct: 274 cctaaaaaccaataatctcaagcagcaaaacaactaaacaaacacaaagcttaacagtta 215
Query: 251 ctacactgttcgttaactttcctcctacacag 282
|||||||| ||||||| |||| ||||||||||
Sbjct: 214 ctacactgatcgttaattttcttcctacacag 183
>gb|CW468213.1|CW468213 fsbb001f220e08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f220e08, DNA
sequence
Length = 580
Score = 137 bits (69), Expect = 4e-030
Identities = 84/89 (94%)
Strand = Plus / Plus
Query: 1326 tactcatcgacggccgacttgacttccaccttgttgatcttccctccgaggccagaagca 1385
|||||||||||||||||||| ||| || ||||| |||||||||||||||||||||||||
Sbjct: 492 tactcatcgacggccgacttcactccctccttggcgatcttccctccgaggccagaagca 551
Query: 1386 agatccagcgctcccgacttggacatcgt 1414
|||||||||||||||||||||||||||||
Sbjct: 552 agatccagcgctcccgacttggacatcgt 580
>gb|CL157010.1|CL157010 104_344_10783254_116_31374_198 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10783254, DNA
sequence
Length = 749
Score = 135 bits (68), Expect = 1e-029
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 858 actggatcaggtgcatgacatgttgcctcaatggcgtaaacagcatcaaaagtgttgtca 917
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct: 70 actggatcaggtgcatgacatgtcgcctcaatggcataaacagcatcgaaagtgttgtca 129
Query: 918 tcgaacggcatcttcatgaagtccgcct 945
||||||||||| ||||||||||| ||||
Sbjct: 130 tcgaacggcattttcatgaagtctgcct 157
Score = 99.6 bits (50), Expect = 8e-019
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 991 cctttcccctggttatctggtattcgttgttattcaatccggtaactgaagttgagct 1048
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 652 cctttcccctggttatctggtactcattgttattcaatccggtaactgaagttgagct 709
Score = 77.8 bits (39), Expect = 3e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 943 ccttgacaaaatcacatgttccactaattcctgctaaacggttgagctcct 993
|||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct: 518 ccttgacaaaatcacaggttccactaattcctgccaaacgattgagctcct 568
>gb|CW178024.1|CW178024 104_591_11159343_116_36607_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159343, DNA
sequence
Length = 634
Score = 127 bits (64), Expect = 3e-027
Identities = 85/92 (92%)
Strand = Plus / Minus
Query: 1324 catactcatcgacggccgacttgacttccaccttgttgatcttccctccgaggccagaag 1383
||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||| |
Sbjct: 479 catactcatcgactgccgatttgacttcctccttgttgatcttccctccgaggccagatg 420
Query: 1384 caagatccagcgctcccgacttggacatcgtg 1415
|||||||||| ||||||| ||| |||||||||
Sbjct: 419 caagatccagggctcccgccttcgacatcgtg 388
>gb|CW292408.1|CW292408 104_772_11414072_116_35578_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11414072, DNA
sequence
Length = 671
Score = 127 bits (64), Expect = 3e-027
Identities = 85/92 (92%)
Strand = Plus / Minus
Query: 1324 catactcatcgacggccgacttgacttccaccttgttgatcttccctccgaggccagaag 1383
||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||| |
Sbjct: 505 catactcatcgactgccgatttgacttcctccttgttgatcttccctccgaggccagatg 446
Query: 1384 caagatccagcgctcccgacttggacatcgtg 1415
|||||||||| ||||||| ||| |||||||||
Sbjct: 445 caagatccagggctcccgccttcgacatcgtg 414
>gb|CW391887.1|CW391887 fsbb001f078d24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f078d24, DNA
sequence
Length = 725
Score = 127 bits (64), Expect = 3e-027
Identities = 67/68 (98%)
Strand = Plus / Minus
Query: 1188 ctgtgagcaaagtggaaggattcaccccaaccatactcatagaagctagtggcaagatca 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 ctgtgagcaaagtggaaggattcaccccaaccatactcatagaagctagtggcaagatca 68
Query: 1248 tagtattt 1255
|| |||||
Sbjct: 67 taatattt 60
Score = 117 bits (59), Expect = 3e-024
Identities = 71/75 (94%)
Strand = Plus / Minus
Query: 1101 accttcattcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatg 1160
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct: 370 accttcattcctggtttcaagccaagctgcagggcaagaaaatgctcatgacgcttgatg 311
Query: 1161 ctttcacgtaaggat 1175
|||||||| ||||||
Sbjct: 310 ctttcacgcaaggat 296
Score = 83.8 bits (42), Expect = 5e-014
Identities = 54/58 (93%)
Strand = Plus / Minus
Query: 1047 ctaaatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaacct 1104
|||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||
Sbjct: 513 ctaaatcttgcaatctctctcagcggtccacctattccgcagcccacatccaaaacct 456
>gb|CW292409.1|CW292409 104_772_11414072_148_35582_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11414072, DNA
sequence
Length = 619
Score = 121 bits (61), Expect = 2e-025
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 1324 catactcatcgacggccgacttgacttccaccttgttgatcttccctccgaggccagaag 1383
||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||| |
Sbjct: 531 catactcatcgactgccgatttgacttcctccttgttgatcttccctccgaggccagatg 590
Query: 1384 caagatccagcgctcccgacttggacatc 1412
|||||||||| ||||||| ||| ||||||
Sbjct: 591 caagatccagggctcccgccttcgacatc 619
>gb|CW252313.1|CW252313 104_715_11224427_148_35090_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224427, DNA
sequence
Length = 724
Score = 115 bits (58), Expect = 1e-023
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 1047 ctaaatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaacct 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ctaaatcttgcaatttctctcagtggtccacctattccacagcccacatctaaaacct 79
Score = 69.9 bits (35), Expect = 7e-010
Identities = 55/59 (93%), Gaps = 2/59 (3%)
Strand = Plus / Minus
Query: 991 cctttcccctggttatctggtattcgttgttattcaa-tccggtaactgaagttgagct 1048
|||||||||||||||||||||| || | ||||||||| |||||||||||||||||||||
Sbjct: 709 cctttcccctggttatctggtactcat-gttattcaaatccggtaactgaagttgagct 652
>gb|CW058559.1|CW058559 104_301_10518804_115_30164 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518804, DNA
sequence
Length = 618
Score = 113 bits (57), Expect = 5e-023
Identities = 81/89 (91%)
Strand = Plus / Minus
Query: 1101 accttcattcctggtttcaaaccaagttgcagggcaagaaaatgctcatgtcgcttgatg 1160
|||||||||||| ||||||| ||||| ||||| |||||||||||||||| |||||||||
Sbjct: 170 accttcattccttgtttcaagccaagctgcagtacaagaaaatgctcatgccgcttgatg 111
Query: 1161 ctttcacgtaaggattctccattccatct 1189
| |||| ||||||||||||||||||||||
Sbjct: 110 cattcaagtaaggattctccattccatct 82
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 430,128
Number of Sequences: 832831
Number of extensions: 430128
Number of successful extensions: 120396
Number of sequences better than 0.5: 77
Number of HSP's better than 0.5 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120222
Number of HSP's gapped (non-prelim): 149
length of query: 1617
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1597
effective length of database: 474,703,049
effective search space: 758100769253
effective search space used: 758100769253
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)