BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405117.2.2
(800 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE356553.1|BE356553 DG1_126_C05.b1_A002 Dark Grown 1 (DG... 270 2e-070
gb|CN139539.1|CN139539 OX1_22_E01.g1_A002 Oxidatively-stres... 264 1e-068
gb|CL157536.1|CL157536 104_345_10783651_114_31477_211 Sorgh... 262 4e-068
gb|CW118138.1|CW118138 104_494_11108040_148_34621_088 Sorgh... 262 4e-068
gb|AW672235.1|AW672235 LG1_358_E01.b1_A002 Light Grown 1 (L... 262 4e-068
gb|AW922582.1|AW922582 DG1_45_E11.g1_A002 Dark Grown 1 (DG1... 262 4e-068
gb|BE356646.1|BE356646 DG1_126_C05.g1_A002 Dark Grown 1 (DG... 262 4e-068
gb|BE357653.1|BE357653 DG1_21_E10.g1_A002 Dark Grown 1 (DG1... 262 4e-068
gb|BE357851.1|BE357851 DG1_22_E09.g1_A002 Dark Grown 1 (DG1... 262 4e-068
gb|BG052635.1|BG052635 RHIZ2_27_D08.g1_A003 Rhizome2 (RHIZ2... 262 4e-068
gb|BG947040.1|BG947040 IP1_2_G11.g1_A002 Immature pannicle ... 262 4e-068
gb|BI211637.1|BI211637 IP1_60_A09.g1_A002 Immature pannicle... 262 4e-068
gb|CN139453.1|CN139453 OX1_22_E01.b1_A002 Oxidatively-stres... 262 4e-068
gb|CD213475.1|CD213475 HS1_41_D06.b1_A012 Heat-shocked seed... 260 2e-067
gb|CD206211.1|CD206211 HS1_21_H12.b1_A012 Heat-shocked seed... 210 1e-052
gb|CN149618.1|CN149618 WOUND1_63_H04.g1_A002 Wounded leaves... 208 6e-052
gb|BI075604.1|BI075604 IP1_22_G09.g1_A002 Immature pannicle... 105 6e-021
gb|CW030005.1|CW030005 104_257_10499999_116_30402 Sorghum m... 103 2e-020
gb|CW143823.1|CW143823 104_535_11137619_116_34954_036 Sorgh... 103 2e-020
gb|CW143824.1|CW143824 104_535_11137619_148_34958_036 Sorgh... 103 2e-020
gb|CW205284.1|CW205284 104_633_11186988_148_36927_038 Sorgh... 103 2e-020
gb|BE362164.1|BE362164 DG1_84_F03.g1_A002 Dark Grown 1 (DG1... 103 2e-020
gb|BG487539.1|BG487539 EM1_67_C06.b1_A002 Embryo 1 (EM1) So... 103 2e-020
gb|DN552493.1|DN552493 pSHR-RT-A-H1_C07_C085 pSHR Sorghum h... 101 1e-019
gb|CW223045.1|CW223045 104_658_11202698_116_37184_003 Sorgh... 100 4e-019
gb|CL183819.1|CL183819 104_396_10898428_114_31923_268 Sorgh... 98 2e-018
gb|CW215159.1|CW215159 104_647_11194395_116_37165_010 Sorgh... 98 2e-018
gb|CW215160.1|CW215160 104_647_11194395_148_37166_010 Sorgh... 98 2e-018
gb|CW417037.1|CW417037 fsbb001f117n19f0 Sorghum methylation... 98 2e-018
gb|CW417038.1|CW417038 fsbb001f117n19k0 Sorghum methylation... 98 2e-018
gb|CW459733.1|CW459733 fsbb001f206j20k0 Sorghum methylation... 98 2e-018
gb|BG052636.1|BG052636 RHIZ2_27_D09.g1_A003 Rhizome2 (RHIZ2... 98 2e-018
gb|CD229132.1|CD229132 CCC1_13_B02.b1_A007 Callus culture/c... 98 2e-018
gb|CF433608.1|CF433608 NIT1_28_D06.b1_A002 Nitrogen-deficie... 98 2e-018
gb|CN136014.1|CN136014 OX1_40_F12.b1_A002 Oxidatively-stres... 98 2e-018
gb|CN141940.1|CN141940 WOUND1_2_G05.g1_A002 Wounded leaves ... 98 2e-018
gb|CN150879.1|CN150879 WOUND1_72_B09.b1_A002 Wounded leaves... 98 2e-018
gb|BG487912.1|BG487912 RHIZ2_60_H06.g1_A003 Rhizome2 (RHIZ2... 96 6e-018
gb|BG558117.1|BG558117 RHIZ2_67_A09.g1_A003 Rhizome2 (RHIZ2... 96 6e-018
gb|CD211738.1|CD211738 HS1_64_D02.b1_A012 Heat-shocked seed... 96 6e-018
gb|CW404685.1|CW404685 fsbb001f096o23k0 Sorghum methylation... 90 4e-016
gb|CL181053.1|CL181053 104_391_10896478_148_31927_238 Sorgh... 88 1e-015
gb|CW038952.1|CW038952 104_271_10505213_114_30387 Sorghum m... 88 1e-015
gb|CW396805.1|CW396805 fsbb001f085g15k0 Sorghum methylation... 88 1e-015
gb|CW410295.1|CW410295 fsbb001f104p18k0 Sorghum methylation... 88 1e-015
gb|AW678398.1|AW678398 WS1_15_E05.g1_A002 Water-stressed 1 ... 88 1e-015
gb|AW680192.1|AW680192 WS1_4_C09.g1_A002 Water-stressed 1 (... 88 1e-015
gb|AW923615.1|AW923615 DG1_56_H08.g1_A002 Dark Grown 1 (DG1... 88 1e-015
gb|BE355488.1|BE355488 DG1_114_G02.g1_A002 Dark Grown 1 (DG... 88 1e-015
gb|BE356481.1|BE356481 DG1_125_C07.g1_A002 Dark Grown 1 (DG... 88 1e-015
gb|BE356504.1|BE356504 DG1_125_G03.g1_A002 Dark Grown 1 (DG... 88 1e-015
gb|BE359733.1|BE359733 DG1_56_H08.g2_A002 Dark Grown 1 (DG1... 88 1e-015
gb|BE361712.1|BE361712 DG1_81_C11.g1_A002 Dark Grown 1 (DG1... 88 1e-015
gb|BE363177.1|BE363177 DG1_9_H02.g1_A002 Dark Grown 1 (DG1)... 88 1e-015
gb|BE593178.1|BE593178 WS1_98_E03.g1_A002 Water-stressed 1 ... 88 1e-015
gb|BG050374.1|BG050374 FM1_53_C07.g1_A003 Floral-Induced Me... 88 1e-015
gb|BG605888.1|BG605888 RHIZ2_82_G10.g1_A003 Rhizome2 (RHIZ2... 88 1e-015
gb|CD224909.1|CD224909 CCC1_37_A05.b1_A007 Callus culture/c... 88 1e-015
gb|CD225604.1|CD225604 CCC1_40_G02.b1_A007 Callus culture/c... 88 1e-015
gb|CD227391.1|CD227391 CCC1_51_H09.b1_A007 Callus culture/c... 88 1e-015
gb|CF427555.1|CF427555 PH1_16_E07.b1_A002 Phosphorous-defic... 88 1e-015
gb|CN131344.1|CN131344 RHOH1_47_H10.b1_A002 Acid- and alkal... 88 1e-015
gb|BF422100.1|BF422100 FM1_12_H05.g1_A003 Floral-Induced Me... 84 2e-014
gb|CW229299.1|CW229299 104_670_11207230_116_37262_087 Sorgh... 82 9e-014
gb|CW229300.1|CW229300 104_670_11207230_148_37261_087 Sorgh... 82 9e-014
gb|CW428512.1|CW428512 fsbb001f141e03k0 Sorghum methylation... 82 9e-014
gb|CL190655.1|CL190655 104_409_10906227_116_32496_016 Sorgh... 80 4e-013
gb|CW128842.1|CW128842 104_510_11114239_116_34758_022 Sorgh... 80 4e-013
gb|CW436489.1|CW436489 fsbb001f153b24f0 Sorghum methylation... 80 4e-013
gb|CW497689.1|CW497689 fsbb001f290j02k0 Sorghum methylation... 80 4e-013
gb|BE918392.1|BE918392 OV1_3_A07.g1_A002 Ovary 1 (OV1) Sorg... 80 4e-013
gb|BF586555.1|BF586555 FM1_29_F11.g1_A003 Floral-Induced Me... 80 4e-013
gb|BG103002.1|BG103002 RHIZ2_35_H06.b1_A003 Rhizome2 (RHIZ2... 80 4e-013
gb|BG487842.1|BG487842 RHIZ2_60_A07.g1_A003 Rhizome2 (RHIZ2... 80 4e-013
gb|CL177479.1|CL177479 104_384_10893857_116_31916_305 Sorgh... 76 6e-012
gb|CL177480.1|CL177480 104_384_10893857_148_31915_305 Sorgh... 76 6e-012
gb|BE355170.1|BE355170 DG1_10_F05.g1_A002 Dark Grown 1 (DG1... 76 6e-012
gb|CN136100.1|CN136100 OX1_40_F12.g1_A002 Oxidatively-stres... 76 6e-012
gb|CW111252.1|CW111252 104_484_11104205_116_34531_023 Sorgh... 74 2e-011
gb|CW111253.1|CW111253 104_484_11104205_148_34527_023 Sorgh... 74 2e-011
gb|CW218469.1|CW218469 104_652_11196207_116_37528_062 Sorgh... 74 2e-011
gb|CW368566.1|CW368566 fsbb001f042j11k0 Sorghum methylation... 74 2e-011
gb|AW282975.1|AW282975 LG1_206_D03.g1_A002 Light Grown 1 (L... 74 2e-011
gb|AW285132.1|AW285132 LG1_206_E11.g1_A002 Light Grown 1 (L... 74 2e-011
gb|AW676674.1|AW676674 DG1_13_H08.g1_A002 Dark Grown 1 (DG1... 74 2e-011
gb|BE352863.1|BE352863 LG1_267_G09.g1_A002 Light Grown 1 (L... 74 2e-011
gb|BE352864.1|BE352864 LG1_267_G10.g1_A002 Light Grown 1 (L... 74 2e-011
gb|BE356755.1|BE356755 DG1_12_C08.g1_A002 Dark Grown 1 (DG1... 74 2e-011
gb|BG605826.1|BG605826 RHIZ2_81_H11.g1_A003 Rhizome2 (RHIZ2... 74 2e-011
gb|CD235852.1|CD235852 SS1_24_D08.b1_A012 Salt-stressed see... 74 2e-011
gb|CD236573.1|CD236573 SS1_35_F07.b1_A012 Salt-stressed see... 74 2e-011
gb|CN146426.1|CN146426 WOUND1_41_D07.b1_A002 Wounded leaves... 74 2e-011
gb|CX618502.1|CX618502 GABR1_40_B04.b1_A002 GA- or brassino... 74 2e-011
gb|BG558983.1|BG558983 RHIZ2_53_B08.g1_A003 Rhizome2 (RHIZ2... 72 9e-011
gb|CX621250.1|CX621250 GABR1_57_A12.b1_A002 GA- or brassino... 66 5e-009
gb|CW169284.1|CW169284 104_579_11154593_116_36499_075 Sorgh... 64 2e-008
gb|CW169285.1|CW169285 104_579_11154593_148_36500_075 Sorgh... 64 2e-008
gb|CL171167.1|CL171167 104_372_10889229_148_31778_285 Sorgh... 62 8e-008
gb|CW105400.1|CW105400 104_474_11012877_148_34448_085 Sorgh... 62 8e-008
gb|CD235680.1|CD235680 SS1_37_G02.b1_A012 Salt-stressed see... 60 3e-007
gb|CL154550.1|CL154550 104_339_10781491_114_31371_355 Sorgh... 58 1e-006
gb|CL190997.1|CL190997 104_409_10906473_114_32488_037 Sorgh... 58 1e-006
gb|CL190998.1|CL190998 104_409_10906473_116_32496_037 Sorgh... 58 1e-006
gb|CW163520.1|CW163520 104_571_11151505_116_36453_011 Sorgh... 58 1e-006
gb|CW171234.1|CW171234 104_581_11155631_148_36522_082 Sorgh... 58 1e-006
gb|CW183379.1|CW183379 104_599_11164586_148_36677_011 Sorgh... 58 1e-006
gb|CW382993.1|CW382993 fsbb001f065e16f0 Sorghum methylation... 58 1e-006
gb|AW672311.1|AW672311 LG1_358_E01.g1_A002 Light Grown 1 (L... 58 1e-006
gb|CN146506.1|CN146506 WOUND1_41_D07.g1_A002 Wounded leaves... 58 1e-006
gb|BZ336934.1|BZ336934 ia84b04.b1 WGS-SbicolorF (JM107 adap... 56 5e-006
gb|CW360174.1|CW360174 fsbb001f028c08k0 Sorghum methylation... 56 5e-006
gb|CW370182.1|CW370182 fsbb001f044p12f0 Sorghum methylation... 56 5e-006
gb|CW370183.1|CW370183 fsbb001f044p12k0 Sorghum methylation... 56 5e-006
gb|CW183415.1|CW183415 104_599_11164604_148_36677_076 Sorgh... 52 8e-005
gb|CW410294.1|CW410294 fsbb001f104p18f0 Sorghum methylation... 48 0.001
gb|CD211530.1|CD211530 HS1_60_G11.g1_A012 Heat-shocked seed... 48 0.001
gb|CW477350.1|CW477350 fsbb001f234k14f0 Sorghum methylation... 46 0.005
gb|CL699163.2|CL699163 SP__Ba0042P13.r SP__Ba Sorghum propi... 46 0.005
gb|BE598895.1|BE598895 PI1_83_B04.b1_A002 Pathogen induced ... 46 0.005
gb|BG159065.1|BG159065 RHIZ2_17_D03.b1_A003 Rhizome2 (RHIZ2... 46 0.005
gb|BG241925.1|BG241925 RHIZ2_17_D03.b2_A003 Rhizome2 (RHIZ2... 46 0.005
gb|BG462993.1|BG462993 EM1_46_C02.g1_A002 Embryo 1 (EM1) So... 46 0.005
gb|BG355958.2|BG355958 EM1_18_F11.g1_A002 Embryo 1 (EM1) So... 46 0.005
gb|CD204106.1|CD204106 HS1_3_A03.g1_A012 Heat-shocked seedl... 46 0.005
gb|CD209899.1|CD209899 HS1_55_E09.g1_A012 Heat-shocked seed... 46 0.005
gb|CD223416.1|CD223416 CCC1_27_H12.g1_A007 Callus culture/c... 46 0.005
gb|CF487567.1|CF487567 POL1_44_C11.g1_A002 Pollen Sorghum b... 46 0.005
gb|CN125710.1|CN125710 RHOH1_12_F08.g1_A002 Acid- and alkal... 46 0.005
gb|CX606238.1|CX606238 ANR1_1_H07.g1_A002 Anaerobic roots S... 46 0.005
gb|CX609645.1|CX609645 ANR1_13_H09.g1_A002 Anaerobic roots ... 46 0.005
gb|BZ780113.1|BZ780113 ii37d04.b1 WGS-SbicolorF (DH5a methy... 44 0.020
gb|CL186925.1|CL186925 104_402_10900532_114_32431_078 Sorgh... 44 0.020
gb|CW029076.1|CW029076 104_256_10499469_114_30399 Sorghum m... 44 0.020
gb|CW029077.1|CW029077 104_256_10499469_116_30400 Sorghum m... 44 0.020
gb|CW030004.1|CW030004 104_257_10499999_114_30401 Sorghum m... 44 0.020
gb|CW038403.1|CW038403 104_270_10504906_114_30385 Sorghum m... 44 0.020
gb|CW068156.1|CW068156 104_316_10524949_115_30145 Sorghum m... 44 0.020
gb|CW166931.1|CW166931 104_575_11153323_148_36767_066 Sorgh... 44 0.020
gb|CW180484.1|CW180484 104_595_11162970_148_36646_079 Sorgh... 44 0.020
gb|CW350844.1|CW350844 fsbb001f012f16f0 Sorghum methylation... 44 0.020
gb|CW422103.1|CW422103 fsbb001f131d16f0 Sorghum methylation... 44 0.020
gb|CW451850.1|CW451850 fsbb001f192b22f0 Sorghum methylation... 44 0.020
gb|BE358975.1|BE358975 DG1_37_E12.g1_A002 Dark Grown 1 (DG1... 44 0.020
gb|BG556223.1|BG556223 EM1_67_C06.g1_A002 Embryo 1 (EM1) So... 44 0.020
gb|BM326416.1|BM326416 PIC1_56_G06.b1_A002 Pathogen-infecte... 44 0.020
gb|CD224818.1|CD224818 CCC1_36_C08.g1_A007 Callus culture/c... 44 0.020
gb|CD235723.1|CD235723 SS1_37_G03.b1_A012 Salt-stressed see... 44 0.020
gb|CF431595.1|CF431595 NIT1_8_D06.g1_A002 Nitrogen-deficien... 44 0.020
gb|CF434179.1|CF434179 NIT1_32_A05.g1_A002 Nitrogen-deficie... 44 0.020
gb|CX622346.1|CX622346 GABR1_63_A06.g2_A002 GA- or brassino... 44 0.020
gb|CW032388.1|CW032388 104_261_10501349_115_30364 Sorghum m... 42 0.077
gb|CW090017.1|CW090017 104_435_10949040_116_32599_086 Sorgh... 42 0.077
gb|CW129597.1|CW129597 104_511_11114651_148_34760_036 Sorgh... 42 0.077
gb|CW145536.1|CW145536 104_538_11138519_148_34980_094 Sorgh... 42 0.077
gb|BE592773.1|BE592773 WS1_90_C01.b1_A002 Water-stressed 1 ... 42 0.077
gb|BG673886.1|BG673886 EM1_60_H03.g1_A002 Embryo 1 (EM1) So... 42 0.077
gb|CF072087.1|CF072087 FE1_20_E03.g2_A002 Iron-deficient se... 42 0.077
gb|CN131440.1|CN131440 RHOH1_48_D01.b1_A002 Acid- and alkal... 42 0.077
gb|BZ696302.1|BZ696302 SP__Ba0077D23.r SP__Ba Sorghum propi... 40 0.31
gb|CL151344.1|CL151344 104_333_10779180_114_31359_348 Sorgh... 40 0.31
gb|CL152256.1|CL152256 104_335_10779831_114_31363_231 Sorgh... 40 0.31
gb|CL152257.1|CL152257 104_335_10779831_116_31364_231 Sorgh... 40 0.31
gb|CL156815.1|CL156815 104_344_10783131_114_31373_075 Sorgh... 40 0.31
gb|CL178085.1|CL178085 104_385_10894305_148_31913_369 Sorgh... 40 0.31
gb|CL192610.1|CL192610 104_415_10940369_116_32260_069 Sorgh... 40 0.31
gb|CW030232.1|CW030232 104_258_10500133_116_30404 Sorghum m... 40 0.31
gb|CW046790.1|CW046790 104_284_10512353_115_30220 Sorghum m... 40 0.31
gb|CW090763.1|CW090763 104_436_10949461_114_32606_051 Sorgh... 40 0.31
gb|CW102380.1|CW102380 104_470_11011307_116_34416_038 Sorgh... 40 0.31
gb|CW114602.1|CW114602 104_489_11106079_116_34571_026 Sorgh... 40 0.31
gb|CW124694.1|CW124694 104_504_11111923_116_34705_070 Sorgh... 40 0.31
gb|CW149954.1|CW149954 104_549_11142773_148_36300_027 Sorgh... 40 0.31
gb|CW182244.1|CW182244 104_597_11163965_116_36659_021 Sorgh... 40 0.31
gb|CW312871.1|CW312871 104_802_11470988_148_35779_066 Sorgh... 40 0.31
gb|CW350291.1|CW350291 fsbb001f011i09k0 Sorghum methylation... 40 0.31
gb|CW362628.1|CW362628 fsbb001f033m07f0 Sorghum methylation... 40 0.31
gb|CW362629.1|CW362629 fsbb001f033m07k0 Sorghum methylation... 40 0.31
gb|CW387612.1|CW387612 fsbb001f072a13k0 Sorghum methylation... 40 0.31
gb|CW409073.1|CW409073 fsbb001f103d19k0 Sorghum methylation... 40 0.31
gb|CW490608.1|CW490608 fsbb001f280c01f0 Sorghum methylation... 40 0.31
gb|CW495157.1|CW495157 fsbb001f286m18k0 Sorghum methylation... 40 0.31
gb|CW496951.1|CW496951 fsbb001f289h06k0 Sorghum methylation... 40 0.31
gb|CW791205.1|CW791205 SP__Ba0077D23.r SP__Ba Sorghum propi... 40 0.31
gb|AW746290.1|AW746290 WS1_40_H02.g1_A002 Water-stressed 1 ... 40 0.31
gb|BE356098.1|BE356098 DG1_122_A06.b1_A002 Dark Grown 1 (DG... 40 0.31
gb|BE363351.1|BE363351 WS1_62_D12.b1_A002 Water-stressed 1 ... 40 0.31
gb|BE600558.1|BE600558 PI1_94_F06.b1_A002 Pathogen induced ... 40 0.31
gb|CD230817.1|CD230817 SS1_9_C04.g1_A012 Salt-stressed seed... 40 0.31
gb|CN126995.1|CN126995 RHOH1_20_A02.g1_A002 Acid- and alkal... 40 0.31
gb|CN136666.1|CN136666 OX1_44_D01.g1_A002 Oxidatively-stres... 40 0.31
gb|CN139510.1|CN139510 OX1_22_B06.g1_A002 Oxidatively-stres... 40 0.31
gb|CN140903.1|CN140903 OX1_47_H07.g1_A002 Oxidatively-stres... 40 0.31
gb|CN141883.1|CN141883 WOUND1_2_B01.g1_A002 Wounded leaves ... 40 0.31
gb|CX607792.1|CX607792 ANR1_30_F06.g1_A002 Anaerobic roots ... 40 0.31
gb|CX609799.1|CX609799 ANR1_14_G02.g1_A002 Anaerobic roots ... 40 0.31
gb|CX612855.1|CX612855 GABR1_4_G11.g1_A002 GA- or brassinol... 40 0.31
gb|CX618472.1|CX618472 GABR1_39_G06.g1_A002 GA- or brassino... 40 0.31
>gb|BE356553.1|BE356553 DG1_126_C05.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 454
Score = 270 bits (136), Expect = 2e-070
Identities = 196/215 (91%), Gaps = 1/215 (0%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 211 gatcagggacttccggaacctggagagcaagggggtggcgttccccaagaaccagccgat 270
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaa 120
|||||||||||||||||||| |||||| |||||||||||||| |||||||| ||||||||
Sbjct: 271 gcggctctactccagcctgtggaacgccgacgactgggcgacacagggcggccgcgtcaa 330
Query: 121 gacggactggtcccacgcccccttctccgcctcctaccgcgggttcaaggccgacgcttg 180
|||||||||||||||||| |||||||||||||| ||||| || |||| ||||||||| ||
Sbjct: 331 gacggactggtcccacgcgcccttctccgcctcgtaccggggattcagggccgacgcctg 390
Query: 181 cnt-gccgtcgcgggcggccggacccgctgcggcg 214
| | || ||||| |||||| ||| ||||||||||
Sbjct: 391 cgtcgcagtcgccggcggcaagacgcgctgcggcg 425
>gb|CN139539.1|CN139539 OX1_22_E01.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_22_E01_A002 5', mRNA sequence
Length = 705
Score = 264 bits (133), Expect = 1e-068
Identities = 166/177 (93%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 526 gatcagggacttccggaacctggagagcaagggggtggcgttccccaagaaccagccgat 585
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaa 120
|||||||||||||||||||| |||||| |||||||||||||| |||||||| ||||||||
Sbjct: 586 gcggctctactccagcctgtggaacgccgacgactgggcgacacagggcggccgcgtcaa 645
Query: 121 gacggactggtcccacgcccccttctccgcctcctaccgcgggttcaaggccgacgc 177
|||||||||||||||||| |||||||||||||| ||||| || |||| |||||||||
Sbjct: 646 gacggactggtcccacgcgcccttctccgcctcgtaccggggattcagggccgacgc 702
>gb|CL157536.1|CL157536 104_345_10783651_114_31477_211 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10783651, DNA
sequence
Length = 783
Score = 262 bits (132), Expect = 4e-068
Identities = 195/215 (90%), Gaps = 1/215 (0%)
Strand = Plus / Minus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 732 gatcagggacttccggaacctggagagcaagggggtggcgttccccaagaaccagccgat 673
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaa 120
|||||| ||||||||||||| |||||| |||||||||||||| |||||||| ||||||||
Sbjct: 672 gcggctttactccagcctgtggaacgccgacgactgggcgacacagggcggccgcgtcaa 613
Query: 121 gacggactggtcccacgcccccttctccgcctcctaccgcgggttcaaggccgacgcttg 180
|||||||||||||||||| |||||||||||||| ||||| || |||| ||||||||| ||
Sbjct: 612 gacggactggtcccacgcgcccttctccgcctcgtaccggggattcagggccgacgcctg 553
Query: 181 cnt-gccgtcgcgggcggccggacccgctgcggcg 214
| | || ||||| |||||| ||| ||||||||||
Sbjct: 552 cgtcgcagtcgccggcggcaagacgcgctgcggcg 518
Score = 262 bits (132), Expect = 4e-068
Identities = 141/144 (97%)
Strand = Plus / Minus
Query: 262 gccggggactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtg 321
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 464 gccggggactggtacaaccaggagctggacctcacgctgcagcagcggatgcggtgggtg 405
Query: 322 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctc 381
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 404 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctacccgcagggcctc 345
Query: 382 cccgccgagtgctccatgcagtag 405
||||||||||||||||||||||||
Sbjct: 344 cccgccgagtgctccatgcagtag 321
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 209 gcggcgccaccgtcggcaccgagggcaccggcgc 242
|||||| | ||||||||||||||||| |||||||
Sbjct: 508 gcggcggcgccgtcggcaccgagggcgccggcgc 475
>gb|CW118138.1|CW118138 104_494_11108040_148_34621_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11108040, DNA
sequence
Length = 442
Score = 262 bits (132), Expect = 4e-068
Identities = 141/144 (97%)
Strand = Plus / Minus
Query: 262 gccggggactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtg 321
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 266 gccggggactggtacaaccaggagctggacctcacgctgcagcagcggatgcggtgggtg 207
Query: 322 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctc 381
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 206 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctacccgcagggcctc 147
Query: 382 cccgccgagtgctccatgcagtag 405
||||||||||||||||||||||||
Sbjct: 146 cccgccgagtgctccatgcagtag 123
Score = 119 bits (60), Expect = 4e-025
Identities = 108/123 (87%), Gaps = 1/123 (0%)
Strand = Plus / Minus
Query: 93 actgggcgacgcagggcgggcgcgtcaagacggactggtcccacgcccccttctccgcct 152
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 442 actgggcgacacagggcggccgcgtcaagacggactggtcccacgcgcccttctccgcct 383
Query: 153 cctaccgcgggttcaaggccgacgcttgcnt-gccgtcgcgggcggccggacccgctgcg 211
| ||||| || |||| ||||||||| ||| | || ||||| |||||| ||| |||||||
Sbjct: 382 cgtaccggggattcagggccgacgcctgcgtcgcagtcgccggcggcaagacgcgctgcg 323
Query: 212 gcg 214
|||
Sbjct: 322 gcg 320
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 209 gcggcgccaccgtcggcaccgagggcaccggcgc 242
|||||| | ||||||||||||||||| |||||||
Sbjct: 310 gcggcggcgccgtcggcaccgagggcgccggcgc 277
>gb|AW672235.1|AW672235 LG1_358_E01.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 549
Score = 262 bits (132), Expect = 4e-068
Identities = 141/144 (97%)
Strand = Plus / Plus
Query: 262 gccggggactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtg 321
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 263 gccggggactggtacaaccaggagctggacctcacgctgcagcagcggatgcggtgggtg 322
Query: 322 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctc 381
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 323 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctacccgcagggcctc 382
Query: 382 cccgccgagtgctccatgcagtag 405
||||||||||||||||||||||||
Sbjct: 383 cccgccgagtgctccatgcagtag 406
Score = 246 bits (124), Expect = 3e-063
Identities = 181/199 (90%), Gaps = 1/199 (0%)
Strand = Plus / Plus
Query: 17 aacctggagagcaagggggtggcgttccccaagagccagccgatgcggctctactccagc 76
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 11 aacctggagagcaagggggtggcgttccccaagaaccagccgatgcggctctactccagc 70
Query: 77 ctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtcccac 136
|||| |||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 71 ctgtggaacgccgacgactgggcgacacagggcggccgcgtcaagacggactggtcccac 130
Query: 137 gcccccttctccgcctcctaccgcgggttcaaggccgacgcttgcnt-gccgtcgcgggc 195
|| |||||||||||||| ||||| || |||| ||||||||| ||| | || ||||| |||
Sbjct: 131 gcgcccttctccgcctcgtaccggggattcagggccgacgcctgcgtcgcagtcgccggc 190
Query: 196 ggccggacccgctgcggcg 214
||| ||| ||||||||||
Sbjct: 191 ggcaagacgcgctgcggcg 209
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 209 gcggcgccaccgtcggcaccgagggcaccggcgc 242
|||||| | ||||||||||||||||| |||||||
Sbjct: 219 gcggcggcgccgtcggcaccgagggcgccggcgc 252
>gb|AW922582.1|AW922582 DG1_45_E11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 459
Score = 262 bits (132), Expect = 4e-068
Identities = 141/144 (97%)
Strand = Plus / Plus
Query: 262 gccggggactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtg 321
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 52 gccggggactggtacaaccaggagctggacctcacgctgcagcagcggatgcggtgggtg 111
Query: 322 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctc 381
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 112 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctacccgcagggcctc 171
Query: 382 cccgccgagtgctccatgcagtag 405
||||||||||||||||||||||||
Sbjct: 172 cccgccgagtgctccatgcagtag 195
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 209 gcggcgccaccgtcggcaccgagggcaccggcgc 242
|||||| | ||||||||||||||||| |||||||
Sbjct: 8 gcggcggcgccgtcggcaccgagggcgccggcgc 41
>gb|BE356646.1|BE356646 DG1_126_C05.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 564
Score = 262 bits (132), Expect = 4e-068
Identities = 141/144 (97%)
Strand = Plus / Plus
Query: 262 gccggggactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtg 321
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 147 gccggggactggtacaaccaggagctggacctcacgctgcagcagcggatgcggtgggtg 206
Query: 322 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctc 381
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 207 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctacccgcagggcctc 266
Query: 382 cccgccgagtgctccatgcagtag 405
||||||||||||||||||||||||
Sbjct: 267 cccgccgagtgctccatgcagtag 290
Score = 75.8 bits (38), Expect = 6e-012
Identities = 80/93 (86%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 123 cggactggtcccacgcccccttctccgcctcctaccgcgggttcaaggccgacgcttgcn 182
|||||||||||||||| |||||||||||||| ||||| || |||| ||||||||| |||
Sbjct: 1 cggactggtcccacgcgcccttctccgcctcgtaccggggattcagggccgacgcctgcg 60
Query: 183 t-gccgtcgcgggcggccggacccgctgcggcg 214
| || ||||| |||||| ||| ||||||||||
Sbjct: 61 tcgcagtcgccggcggcaagacgcgctgcggcg 93
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 209 gcggcgccaccgtcggcaccgagggcaccggcgc 242
|||||| | ||||||||||||||||| |||||||
Sbjct: 103 gcggcggcgccgtcggcaccgagggcgccggcgc 136
>gb|BE357653.1|BE357653 DG1_21_E10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 554
Score = 262 bits (132), Expect = 4e-068
Identities = 141/144 (97%)
Strand = Plus / Plus
Query: 262 gccggggactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtg 321
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 119 gccggggactggtacaaccaggagctggacctcacgctgcagcagcggatgcggtgggtg 178
Query: 322 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctc 381
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 179 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctacccgcagggcctc 238
Query: 382 cccgccgagtgctccatgcagtag 405
||||||||||||||||||||||||
Sbjct: 239 cccgccgagtgctccatgcagtag 262
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 209 gcggcgccaccgtcggcaccgagggcaccggcgc 242
|||||| | ||||||||||||||||| |||||||
Sbjct: 75 gcggcggcgccgtcggcaccgagggcgccggcgc 108
>gb|BE357851.1|BE357851 DG1_22_E09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 569
Score = 262 bits (132), Expect = 4e-068
Identities = 141/144 (97%)
Strand = Plus / Plus
Query: 262 gccggggactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtg 321
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 133 gccggggactggtacaaccaggagctggacctcacgctgcagcagcggatgcggtgggtg 192
Query: 322 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctc 381
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 193 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctacccgcagggcctc 252
Query: 382 cccgccgagtgctccatgcagtag 405
||||||||||||||||||||||||
Sbjct: 253 cccgccgagtgctccatgcagtag 276
Score = 50.1 bits (25), Expect = 3e-004
Identities = 64/76 (84%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 140 cccttctccgcctcctaccgcgggttcaaggccgacgcttgcnt-gccgtcgcgggcggc 198
|||||||||||||| ||||| || |||| ||||||||| ||| | || ||||| ||||||
Sbjct: 4 cccttctccgcctcgtaccggggattcagggccgacgcctgcgtcgcagtcgccggcggc 63
Query: 199 cggacccgctgcggcg 214
||| ||||||||||
Sbjct: 64 aagacgcgctgcggcg 79
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 209 gcggcgccaccgtcggcaccgagggcaccggcgc 242
|||||| | ||||||||||||||||| |||||||
Sbjct: 89 gcggcggcgccgtcggcaccgagggcgccggcgc 122
>gb|BG052635.1|BG052635 RHIZ2_27_D08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 491
Score = 262 bits (132), Expect = 4e-068
Identities = 141/144 (97%)
Strand = Plus / Plus
Query: 262 gccggggactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtg 321
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 51 gccggggactggtacaaccaggagctggacctcacgctgcagcagcggatgcggtgggtg 110
Query: 322 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctc 381
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 111 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctacccgcagggcctc 170
Query: 382 cccgccgagtgctccatgcagtag 405
||||||||||||||||||||||||
Sbjct: 171 cccgccgagtgctccatgcagtag 194
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 209 gcggcgccaccgtcggcaccgagggcaccggcgc 242
|||||| | ||||||||||||||||| |||||||
Sbjct: 7 gcggcggcgccgtcggcaccgagggcgccggcgc 40
>gb|BG947040.1|BG947040 IP1_2_G11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 588
Score = 262 bits (132), Expect = 4e-068
Identities = 141/144 (97%)
Strand = Plus / Plus
Query: 262 gccggggactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtg 321
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 118 gccggggactggtacaaccaggagctggacctcacgctgcagcagcggatgcggtgggtg 177
Query: 322 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctc 381
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 178 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctacccgcagggcctc 237
Query: 382 cccgccgagtgctccatgcagtag 405
||||||||||||||||||||||||
Sbjct: 238 cccgccgagtgctccatgcagtag 261
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 209 gcggcgccaccgtcggcaccgagggcaccggcgc 242
|||||| | ||||||||||||||||| |||||||
Sbjct: 74 gcggcggcgccgtcggcaccgagggcgccggcgc 107
>gb|BI211637.1|BI211637 IP1_60_A09.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 493
Score = 262 bits (132), Expect = 4e-068
Identities = 141/144 (97%)
Strand = Plus / Plus
Query: 262 gccggggactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtg 321
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 24 gccggggactggtacaaccaggagctggacctcacgctgcagcagcggatgcggtgggtg 83
Query: 322 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctc 381
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 84 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctacccgcagggcctc 143
Query: 382 cccgccgagtgctccatgcagtag 405
||||||||||||||||||||||||
Sbjct: 144 cccgccgagtgctccatgcagtag 167
>gb|CN139453.1|CN139453 OX1_22_E01.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_22_E01_A002 3', mRNA sequence
Length = 731
Score = 262 bits (132), Expect = 4e-068
Identities = 141/144 (97%)
Strand = Plus / Plus
Query: 262 gccggggactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtg 321
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 273 gccggggactggtacaaccaggagctggacctcacgctgcagcagcggatgcggtgggtg 332
Query: 322 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctc 381
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 333 cagcgcaagtacatgatctacaactactgcaccgaccccaagcgctacccgcagggcctc 392
Query: 382 cccgccgagtgctccatgcagtag 405
||||||||||||||||||||||||
Sbjct: 393 cccgccgagtgctccatgcagtag 416
Score = 262 bits (132), Expect = 4e-068
Identities = 195/215 (90%), Gaps = 1/215 (0%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 5 gatcagggacttccggaacctggagagcaagggggtggcgttccccaagaaccagccgat 64
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaa 120
|||||||||||||||||||| |||||| |||||||||||||| |||||||| ||||||||
Sbjct: 65 gcggctctactccagcctgtggaacgccgacgactgggcgacacagggcggccgcgtcaa 124
Query: 121 gacggactggtcccacgcccccttctccgcctcctaccgcgggttcaaggccgacgcttg 180
|||||||||||||||||| || ||||||||||| ||||| || |||| ||||||||| ||
Sbjct: 125 gacggactggtcccacgcgcctttctccgcctcgtaccggggattcagggccgacgcctg 184
Query: 181 cnt-gccgtcgcgggcggccggacccgctgcggcg 214
| | || ||||| |||||| ||| ||||||||||
Sbjct: 185 cgtcgcagtcgccggcggcaagacgcgctgcggcg 219
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 209 gcggcgccaccgtcggcaccgagggcaccggcgc 242
|||||| | ||||||||||||||||| |||||||
Sbjct: 229 gcggcggcgccgtcggcaccgagggcgccggcgc 262
>gb|CD213475.1|CD213475 HS1_41_D06.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_41_D06_A012 3', mRNA sequence
Length = 509
Score = 260 bits (131), Expect = 2e-067
Identities = 140/143 (97%)
Strand = Plus / Plus
Query: 263 ccggggactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtgc 322
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 42 ccggggactggtacaaccaggagctggacctcacgctgcagcagcggatgcggtgggtgc 101
Query: 323 agcgcaagtacatgatctacaactactgcaccgaccccaagcgctaccagcagggcctcc 382
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 102 agcgcaagtacatgatctacaactactgcaccgaccccaagcgctacccgcagggcctcc 161
Query: 383 ccgccgagtgctccatgcagtag 405
|||||||||||||||||||||||
Sbjct: 162 ccgccgagtgctccatgcagtag 184
>gb|CD206211.1|CD206211 HS1_21_H12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_21_H12_A012 3', mRNA sequence
Length = 431
Score = 210 bits (106), Expect = 1e-052
Identities = 115/118 (97%)
Strand = Plus / Plus
Query: 288 ggacctcaccctgcagcagcggatgcgctgggtgcagcgcaagtacatgatctacaacta 347
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 ggacctcacgctgcagcagcggatgcggtgggtgcagcgcaagtacatgatctacaacta 60
Query: 348 ctgcaccgaccccaagcgctaccagcagggcctccccgccgagtgctccatgcagtag 405
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgcaccgaccccaagcgctacccgcagggcctccccgccgagtgctccatgcagtag 118
>gb|CN149618.1|CN149618 WOUND1_63_H04.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_63_H04_A002 5', mRNA sequence
Length = 793
Score = 208 bits (105), Expect = 6e-052
Identities = 123/129 (95%)
Strand = Plus / Plus
Query: 1 gatcagggacttccgcaacctggagagcaagggggtggcgttccccaagagccagccgat 60
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 665 gatcagggacttccggaacctggagagcaagggggtggcgttccccaagaaccagccgat 724
Query: 61 gcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaa 120
|||||||||||||||||||| |||||| |||||||||||||| |||||||| ||||||||
Sbjct: 725 gcggctctactccagcctgtggaacgccgacgactgggcgacacagggcggccgcgtcaa 784
Query: 121 gacggactg 129
|||||||||
Sbjct: 785 gacggactg 793
>gb|BI075604.1|BI075604 IP1_22_G09.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 294
Score = 105 bits (53), Expect = 6e-021
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 349 tgcaccgaccccaagcgctaccagcagggcctccccgccgagtgctccatgcagtag 405
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaccgaccccaagcgctacccgcagggcctccccgccgagtgctccatgcagtag 57
>gb|CW030005.1|CW030005 104_257_10499999_116_30402 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499999, DNA
sequence
Length = 839
Score = 103 bits (52), Expect = 2e-020
Identities = 94/108 (87%)
Strand = Plus / Plus
Query: 50 agccagccgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggc 109
|||||||||||| ||||||||||||||||| |||||| |||||||||||||| | |||
Sbjct: 394 agccagccgatgaagctctactccagcctgtggaacgccgacgactgggcgacccgcggc 453
Query: 110 gggcgcgtcaagacggactggtcccacgcccccttctccgcctcctac 157
||||| | ||||||||||||||| |||| |||||| ||||||||||
Sbjct: 454 gggcgggagaagacggactggtccaacgcgcccttcgtcgcctcctac 501
Score = 44.1 bits (22), Expect = 0.020
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 337 atctacaactactgcaccgacc 358
||||||||||||||||||||||
Sbjct: 649 atctacaactactgcaccgacc 670
>gb|CW143823.1|CW143823 104_535_11137619_116_34954_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137619, DNA
sequence
Length = 601
Score = 103 bits (52), Expect = 2e-020
Identities = 94/108 (87%)
Strand = Plus / Plus
Query: 50 agccagccgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggc 109
|||||||||||| ||||||||||||||||| |||||| |||||||||||||| | |||
Sbjct: 254 agccagccgatgaagctctactccagcctgtggaacgccgacgactgggcgacccgcggc 313
Query: 110 gggcgcgtcaagacggactggtcccacgcccccttctccgcctcctac 157
||||| | ||||||||||||||| |||| |||||| ||||||||||
Sbjct: 314 gggcgggagaagacggactggtccaacgcgcccttcgtcgcctcctac 361
Score = 44.1 bits (22), Expect = 0.020
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 337 atctacaactactgcaccgacc 358
||||||||||||||||||||||
Sbjct: 509 atctacaactactgcaccgacc 530
>gb|CW143824.1|CW143824 104_535_11137619_148_34958_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137619, DNA
sequence
Length = 563
Score = 103 bits (52), Expect = 2e-020
Identities = 94/108 (87%)
Strand = Plus / Minus
Query: 50 agccagccgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggc 109
|||||||||||| ||||||||||||||||| |||||| |||||||||||||| | |||
Sbjct: 486 agccagccgatgaagctctactccagcctgtggaacgccgacgactgggcgacccgcggc 427
Query: 110 gggcgcgtcaagacggactggtcccacgcccccttctccgcctcctac 157
||||| | ||||||||||||||| |||| |||||| ||||||||||
Sbjct: 426 gggcgggagaagacggactggtccaacgcgcccttcgtcgcctcctac 379
Score = 44.1 bits (22), Expect = 0.020
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 337 atctacaactactgcaccgacc 358
||||||||||||||||||||||
Sbjct: 231 atctacaactactgcaccgacc 210
>gb|CW205284.1|CW205284 104_633_11186988_148_36927_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186988, DNA
sequence
Length = 705
Score = 103 bits (52), Expect = 2e-020
Identities = 94/108 (87%)
Strand = Plus / Minus
Query: 50 agccagccgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggc 109
|||||||||||| ||||||||||||||||| |||||| |||||||||||||| | |||
Sbjct: 471 agccagccgatgaagctctactccagcctgtggaacgccgacgactgggcgacccgcggc 412
Query: 110 gggcgcgtcaagacggactggtcccacgcccccttctccgcctcctac 157
||||| | ||||||||||||||| |||| |||||| ||||||||||
Sbjct: 411 gggcgggagaagacggactggtccaacgcgcccttcgtcgcctcctac 364
Score = 44.1 bits (22), Expect = 0.020
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 337 atctacaactactgcaccgacc 358
||||||||||||||||||||||
Sbjct: 216 atctacaactactgcaccgacc 195
>gb|BE362164.1|BE362164 DG1_84_F03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 658
Score = 103 bits (52), Expect = 2e-020
Identities = 94/108 (87%)
Strand = Plus / Plus
Query: 50 agccagccgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggc 109
|||||||||||| ||||||||||||||||| |||||| |||||||||||||| | |||
Sbjct: 62 agccagccgatgaagctctactccagcctgtggaacgccgacgactgggcgacccgcggc 121
Query: 110 gggcgcgtcaagacggactggtcccacgcccccttctccgcctcctac 157
||||| | ||||||||||||||| |||| |||||| ||||||||||
Sbjct: 122 gggcgggagaagacggactggtccaacgcgcccttcgtcgcctcctac 169
Score = 44.1 bits (22), Expect = 0.020
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 337 atctacaactactgcaccgacc 358
||||||||||||||||||||||
Sbjct: 317 atctacaactactgcaccgacc 338
>gb|BG487539.1|BG487539 EM1_67_C06.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 524
Score = 103 bits (52), Expect = 2e-020
Identities = 94/108 (87%)
Strand = Plus / Plus
Query: 50 agccagccgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggc 109
|||||||||||| ||||||||||||||||| |||||| |||||||||||||| | |||
Sbjct: 287 agccagccgatgaagctctactccagcctgtggaacgccgacgactgggcgacccgcggc 346
Query: 110 gggcgcgtcaagacggactggtcccacgcccccttctccgcctcctac 157
||||| | ||||||||||||||| |||| |||||| ||||||||||
Sbjct: 347 gggcgggagaagacggactggtccaacgcgcccttcgtcgcctcctac 394
>gb|DN552493.1|DN552493 pSHR-RT-A-H1_C07_C085 pSHR Sorghum halepense cDNA, mRNA sequence
Length = 655
Score = 101 bits (51), Expect = 1e-019
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 307 cggatgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgc 366
|||||||||||||||||| | |||| ||||||||||||||||||||||||| |||||||
Sbjct: 410 cggatgcgctgggtgcagaggaagttcatgatctacaactactgcaccgacgccaagcgg 351
Query: 367 taccagcagggcctccccgccgagtgc 393
| || ||||||| | ||||||||||||
Sbjct: 350 ttcccgcagggcgtgcccgccgagtgc 324
Score = 67.9 bits (34), Expect = 1e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 57 cgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcgggcgcg 116
|||||||||| ||| | || || | |||||| ||||||||||| ||||||||||| ||||
Sbjct: 655 cgatgcggctgtacgcgagtctctggaacgccgacgactgggccacgcagggcggccgcg 596
Query: 117 tcaagacggactgg 130
||||| ||||||||
Sbjct: 595 tcaaggcggactgg 582
>gb|CW223045.1|CW223045 104_658_11202698_116_37184_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202698, DNA
sequence
Length = 606
Score = 99.6 bits (50), Expect = 4e-019
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 74 agcctgttgaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtcc 133
||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 104 agcctgtggaacgccgacgagtgggcgacgcagggcgggcgcgtcaagacggactggacg 163
Query: 134 cacgcccccttctccgcctcctaccg 159
|| || ||||||| ||||| ||||||
Sbjct: 164 caggcgcccttctacgcctactaccg 189
>gb|CL183819.1|CL183819 104_396_10898428_114_31923_268 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898428, DNA
sequence
Length = 656
Score = 97.6 bits (49), Expect = 2e-018
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtcccacgc 138
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 495 gaacgcggacgactgggcgacgcagggcgggcgcgtgaagacggactggtcgcacgc 551
>gb|CW215159.1|CW215159 104_647_11194395_116_37165_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194395, DNA
sequence
Length = 663
Score = 97.6 bits (49), Expect = 2e-018
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtcccacgc 138
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 372 gaacgcggacgactgggcgacgcagggcgggcgcgtgaagacggactggtcgcacgc 428
>gb|CW215160.1|CW215160 104_647_11194395_148_37166_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194395, DNA
sequence
Length = 673
Score = 97.6 bits (49), Expect = 2e-018
Identities = 55/57 (96%)
Strand = Plus / Minus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtcccacgc 138
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 615 gaacgcggacgactgggcgacgcagggcgggcgcgtgaagacggactggtcgcacgc 559
>gb|CW417037.1|CW417037 fsbb001f117n19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f117n19, DNA
sequence
Length = 477
Score = 97.6 bits (49), Expect = 2e-018
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtcccacgc 138
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 419 gaacgcggacgactgggcgacgcagggcgggcgcgtgaagacggactggtcgcacgc 475
>gb|CW417038.1|CW417038 fsbb001f117n19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f117n19, DNA
sequence
Length = 525
Score = 97.6 bits (49), Expect = 2e-018
Identities = 55/57 (96%)
Strand = Plus / Minus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtcccacgc 138
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 444 gaacgcggacgactgggcgacgcagggcgggcgcgtgaagacggactggtcgcacgc 388
>gb|CW459733.1|CW459733 fsbb001f206j20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f206j20, DNA
sequence
Length = 380
Score = 97.6 bits (49), Expect = 2e-018
Identities = 55/57 (96%)
Strand = Plus / Minus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtcccacgc 138
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 221 gaacgcggacgactgggcgacgcagggcgggcgcgtgaagacggactggtcgcacgc 165
>gb|BG052636.1|BG052636 RHIZ2_27_D09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 130
Score = 97.6 bits (49), Expect = 2e-018
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 353 ccgaccccaagcgctaccagcagggcctccccgccgagtgctccatgcagtag 405
|||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3 ccgaccccaagcgctacccgcagggcctccccgccgagtgctccatgcagtag 55
>gb|CD229132.1|CD229132 CCC1_13_B02.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_13_B02_A007 3', mRNA sequence
Length = 661
Score = 97.6 bits (49), Expect = 2e-018
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtcccacgc 138
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 1 gaacgcggacgactgggcgacgcagggcgggcgcgtgaagacggactggtcgcacgc 57
>gb|CF433608.1|CF433608 NIT1_28_D06.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_28_D06_A002 3', mRNA sequence
Length = 686
Score = 97.6 bits (49), Expect = 2e-018
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtcccacgc 138
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 51 gaacgcggacgactgggcgacgcagggcgggcgcgtgaagacggactggtcgcacgc 107
>gb|CN136014.1|CN136014 OX1_40_F12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_40_F12_A002 3', mRNA sequence
Length = 732
Score = 97.6 bits (49), Expect = 2e-018
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtcccacgc 138
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 51 gaacgcggacgactgggcgacgcagggcgggcgcgtgaagacggactggtcgcacgc 107
>gb|CN141940.1|CN141940 WOUND1_2_G05.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_2_G05_A002 5', mRNA sequence
Length = 688
Score = 97.6 bits (49), Expect = 2e-018
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtcccacgc 138
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 618 gaacgcggacgactgggcgacgcagggcgggcgcgtgaagacggactggtcgcacgc 674
>gb|CN150879.1|CN150879 WOUND1_72_B09.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_72_B09_A002 3', mRNA sequence
Length = 738
Score = 97.6 bits (49), Expect = 2e-018
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtcccacgc 138
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 78 gaacgcggacgactgggcgacgcagggcgggcgcgtgaagacggactggtcgcacgc 134
>gb|BG487912.1|BG487912 RHIZ2_60_H06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 559
Score = 95.6 bits (48), Expect = 6e-018
Identities = 75/84 (89%)
Strand = Plus / Plus
Query: 310 atgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgctac 369
||||||||||||||| | |||| ||||||||||||||||||||||||| ||||||| | |
Sbjct: 198 atgcgctgggtgcagaggaagttcatgatctacaactactgcaccgacgccaagcggttc 257
Query: 370 cagcagggcctccccgccgagtgc 393
| ||||||| | ||||||||||||
Sbjct: 258 ccgcagggcgtgcccgccgagtgc 281
>gb|BG558117.1|BG558117 RHIZ2_67_A09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 247
Score = 95.6 bits (48), Expect = 6e-018
Identities = 75/84 (89%)
Strand = Plus / Plus
Query: 310 atgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgctac 369
||||||||||||||| | |||| ||||||||||||||||||||||||| ||||||| | |
Sbjct: 84 atgcgctgggtgcagaggaagttcatgatctacaactactgcaccgacgccaagcggttc 143
Query: 370 cagcagggcctccccgccgagtgc 393
| ||||||| | ||||||||||||
Sbjct: 144 ccgcagggcgtgcccgccgagtgc 167
>gb|CD211738.1|CD211738 HS1_64_D02.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_64_D02_A012 3', mRNA sequence
Length = 370
Score = 95.6 bits (48), Expect = 6e-018
Identities = 51/52 (98%)
Strand = Plus / Plus
Query: 354 cgaccccaagcgctaccagcagggcctccccgccgagtgctccatgcagtag 405
||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 cgaccccaagcgctacccgcagggcctccccgccgagtgctccatgcagtag 52
>gb|CW404685.1|CW404685 fsbb001f096o23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f096o23, DNA
sequence
Length = 367
Score = 89.7 bits (45), Expect = 4e-016
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 84 acgcggacgactgggcgacgcagggcgggcgcgtcaagacggactggtcccacgccccct 143
|||| |||||||||||||||||||||||||||||||||||||||||| |||| || || |
Sbjct: 172 acgccgacgactgggcgacgcagggcgggcgcgtcaagacggactggacccaggcgccgt 231
Query: 144 tctccgcct 152
|| ||||||
Sbjct: 232 tcaccgcct 240
>gb|CL181053.1|CL181053 104_391_10896478_148_31927_238 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896478, DNA
sequence
Length = 580
Score = 87.7 bits (44), Expect = 1e-015
Identities = 74/84 (88%)
Strand = Plus / Minus
Query: 310 atgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgctac 369
||||||||||||||| | |||| ||||||||||||||||||||||||| ||||||| | |
Sbjct: 267 atgcgctgggtgcagaggaagttcatgatctacaactactgcaccgacgccaagcggttc 208
Query: 370 cagcagggcctccccgccgagtgc 393
| |||||| | ||||||||||||
Sbjct: 207 ccgcagggggtgcccgccgagtgc 184
Score = 75.8 bits (38), Expect = 6e-012
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 53 cagccgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcggg 112
|||||||||||||| ||| | || || | |||||| ||||||||||| |||||||||||
Sbjct: 519 cagccgatgcggctgtacgcgagtctctggaacgccgacgactgggccacgcagggcggc 460
Query: 113 cgcgtcaagacggactgg 130
||||||||| ||||||||
Sbjct: 459 cgcgtcaaggcggactgg 442
>gb|CW038952.1|CW038952 104_271_10505213_114_30387 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505213, DNA
sequence
Length = 612
Score = 87.7 bits (44), Expect = 1e-015
Identities = 74/84 (88%)
Strand = Plus / Minus
Query: 310 atgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgctac 369
||||||||||||||| | |||| ||||||||||||||||||||||||| ||||||| | |
Sbjct: 433 atgcgctgggtgcagaggaagttcatgatctacaactactgcaccgacgccaagcggttc 374
Query: 370 cagcagggcctccccgccgagtgc 393
| |||||| | ||||||||||||
Sbjct: 373 ccgcagggggtgcccgccgagtgc 350
>gb|CW396805.1|CW396805 fsbb001f085g15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f085g15, DNA
sequence
Length = 775
Score = 87.7 bits (44), Expect = 1e-015
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 310 atgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgctac 369
||||||||||||||| | |||| ||||||||||||||||||||||||| ||||||| | |
Sbjct: 30 atgcgctgggtgcagaggaagttcatgatctacaactactgcaccgacgccaagcggttc 89
Query: 370 cagcagggcctccccgccgagtgc 393
| |||||| | ||||||||||||
Sbjct: 90 ccgcagggggtgcccgccgagtgc 113
>gb|CW410295.1|CW410295 fsbb001f104p18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f104p18, DNA
sequence
Length = 150
Score = 87.7 bits (44), Expect = 1e-015
Identities = 63/68 (92%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 262 gccggggactggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtg 321
||||||||||||| |||||||||| |||||||||| ||||||||||||||||| | ||||
Sbjct: 67 gccggggactggtccaaccaggaggtggacctcacgctgcagcagcggatgcggt-ggtg 9
Query: 322 cagcgcaa 329
||||||||
Sbjct: 8 cagcgcaa 1
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 209 gcggcgccaccgtcggcaccgagggcaccggcgc 242
|||||| | ||||||||||||||||| |||||||
Sbjct: 111 gcggcggcgccgtcggcaccgagggcgccggcgc 78
>gb|AW678398.1|AW678398 WS1_15_E05.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 567
Score = 87.7 bits (44), Expect = 1e-015
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 310 atgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgctac 369
||||||||||||||| | |||| ||||||||||||||||||||||||| ||||||| | |
Sbjct: 278 atgcgctgggtgcagaggaagttcatgatctacaactactgcaccgacgccaagcggttc 337
Query: 370 cagcagggcctccccgccgagtgc 393
| |||||| | ||||||||||||
Sbjct: 338 ccgcagggggtgcccgccgagtgc 361
Score = 75.8 bits (38), Expect = 6e-012
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 53 cagccgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcggg 112
|||||||||||||| ||| | || || | |||||| ||||||||||| |||||||||||
Sbjct: 26 cagccgatgcggctgtacgcgagtctctggaacgccgacgactgggccacgcagggcggc 85
Query: 113 cgcgtcaagacggactgg 130
||||||||| ||||||||
Sbjct: 86 cgcgtcaaggcggactgg 103
>gb|AW680192.1|AW680192 WS1_4_C09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 613
Score = 87.7 bits (44), Expect = 1e-015
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 310 atgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgctac 369
||||||||||||||| | |||| ||||||||||||||||||||||||| ||||||| | |
Sbjct: 246 atgcgctgggtgcagaggaagttcatgatctacaactactgcaccgacgccaagcggttc 305
Query: 370 cagcagggcctccccgccgagtgc 393
| |||||| | ||||||||||||
Sbjct: 306 ccgcagggggtgcccgccgagtgc 329
Score = 65.9 bits (33), Expect = 5e-009
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 82 gaacgcggacgactgggcgacgcagggcgggcgcgtcaagacggactgg 130
|||||| ||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct: 23 gaacgccgacgactgggccacgcagggcggccgcgtcaaggcggactgg 71
>gb|AW923615.1|AW923615 DG1_56_H08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 456
Score = 87.7 bits (44), Expect = 1e-015
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 310 atgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgctac 369
||||||||||||||| | |||| ||||||||||||||||||||||||| ||||||| | |
Sbjct: 156 atgcgctgggtgcagaggaagttcatgatctacaactactgcaccgacgccaagcggttc 215
Query: 370 cagcagggcctccccgccgagtgc 393
| |||||| | ||||||||||||
Sbjct: 216 ccgcagggggtgcccgccgagtgc 239
>gb|BE355488.1|BE355488 DG1_114_G02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 660
Score = 87.7 bits (44), Expect = 1e-015
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 310 atgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgctac 369
||||||||||||||| | |||| ||||||||||||||||||||||||| ||||||| | |
Sbjct: 318 atgcgctgggtgcagaggaagttcatgatctacaactactgcaccgacgccaagcggttc 377
Query: 370 cagcagggcctccccgccgagtgc 393
| |||||| | ||||||||||||
Sbjct: 378 ccgcagggggtgcccgccgagtgc 401
Score = 75.8 bits (38), Expect = 6e-012
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 53 cagccgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcggg 112
|||||||||||||| ||| | || || | |||||| ||||||||||| |||||||||||
Sbjct: 66 cagccgatgcggctgtacgcgagtctctggaacgccgacgactgggccacgcagggcggc 125
Query: 113 cgcgtcaagacggactgg 130
||||||||| ||||||||
Sbjct: 126 cgcgtcaaggcggactgg 143
>gb|BE356481.1|BE356481 DG1_125_C07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 588
Score = 87.7 bits (44), Expect = 1e-015
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 310 atgcgctgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgctac 369
||||||||||||||| | |||| ||||||||||||||||||||||||| ||||||| | |
Sbjct: 310 atgcgctgggtgcagaggaagttcatgatctacaactactgcaccgacgccaagcggttc 369
Query: 370 cagcagggcctccccgccgagtgc 393
| |||||| | ||||||||||||
Sbjct: 370 ccgcagggggtgcccgccgagtgc 393
Score = 75.8 bits (38), Expect = 6e-012
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 53 cagccgatgcggctctactccagcctgttgaacgcggacgactgggcgacgcagggcggg 112
|||||||||||||| ||| | || || | |||||| ||||||||||| |||||||||||
Sbjct: 58 cagccgatgcggctgtacgcgagtctctggaacgccgacgactgggccacgcagggcggc 117
Query: 113 cgcgtcaagacggactgg 130
||||||||| ||||||||
Sbjct: 118 cgcgtcaaggcggactgg 135
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 270,124
Number of Sequences: 832831
Number of extensions: 270124
Number of successful extensions: 95598
Number of sequences better than 0.5: 197
Number of HSP's better than 0.5 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95274
Number of HSP's gapped (non-prelim): 321
length of query: 800
length of database: 491,359,669
effective HSP length: 20
effective length of query: 780
effective length of database: 474,703,049
effective search space: 370268378220
effective search space used: 370268378220
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)