BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405110.2.1
(945 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF486234.1|CF486234 POL1_36_C03.g1_A002 Pollen Sorghum b... 906 0.0
gb|AW744784.1|AW744784 LG1_384_C09.b1_A002 Light Grown 1 (L... 890 0.0
gb|BE918962.1|BE918962 FM1_2_D02.b1_A003 Floral-Induced Mer... 882 0.0
gb|BG947288.1|BG947288 IP1_3_G03.b1_A002 Immature pannicle ... 803 0.0
gb|AW744816.1|AW744816 LG1_384_C09.g1_A002 Light Grown 1 (L... 646 0.0
gb|BE918818.1|BE918818 FM1_2_D02.g1_A003 Floral-Induced Mer... 632 e-179
gb|BI139854.1|BI139854 IP1_46_D07.b1_A002 Immature pannicle... 446 e-123
gb|CW284518.1|CW284518 104_761_11409830_148_35496_057 Sorgh... 436 e-120
gb|CW123334.1|CW123334 104_502_11111159_116_34687_086 Sorgh... 410 e-113
gb|BZ412886.1|BZ412886 165d4_ctg1 Subclones from BAC clones... 345 5e-093
gb|BG947201.1|BG947201 IP1_3_G03.g1_A002 Immature pannicle ... 210 2e-052
gb|CW284517.1|CW284517 104_761_11409830_116_35492_057 Sorgh... 155 9e-036
gb|BG322862.1|BG322862 EM1_15_A11.b1_A002 Embryo 1 (EM1) So... 74 3e-011
gb|BG323115.1|BG323115 EM1_15_A11.g1_A002 Embryo 1 (EM1) So... 74 3e-011
gb|CN132421.1|CN132421 OX1_6_C08.b1_A002 Oxidatively-stress... 60 4e-007
gb|CW258775.1|CW258775 104_724_11228060_148_35169_068 Sorgh... 58 2e-006
gb|CL173006.1|CL173006 104_376_10890577_116_31795_097 Sorgh... 50 4e-004
gb|CL186515.1|CL186515 104_401_10900261_114_32408_057 Sorgh... 40 0.36
gb|CW165554.1|CW165554 104_574_11152566_148_36479_031 Sorgh... 40 0.36
gb|CW449190.1|CW449190 fsbb001f183d12k0 Sorghum methylation... 40 0.36
gb|CW476194.1|CW476194 fsbb001f232p01f0 Sorghum methylation... 40 0.36
gb|CD204727.1|CD204727 HS1_9_G05.g1_A012 Heat-shocked seedl... 40 0.36
gb|CD226019.1|CD226019 CCC1_42_E04.g1_A007 Callus culture/c... 40 0.36
gb|CD229226.1|CD229226 CCC1_13_C04.g1_A007 Callus culture/c... 40 0.36
>gb|CF486234.1|CF486234 POL1_36_C03.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_36_C03_A002 5', mRNA sequence
Length = 626
Score = 906 bits (457), Expect = 0.0
Identities = 527/549 (95%), Gaps = 1/549 (0%)
Strand = Plus / Minus
Query: 382 ctcttccatgcccgttgatgcactcttcgcaaaggcctctgtccagtagcgagccgtagc 441
|||||||||||| ||||| |||||||| | |||||||||||||||||||||||||||||
Sbjct: 626 ctcttccatgccagttgacgcactctttgggaaggcctctgtccagtagcgagccgtagc 567
Query: 442 ggcaaatgttggatagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatc 501
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 566 agcaaatgttggatagtcacgcaggtacggttgtgcaacaacagcatcctgaggatcatc 507
Query: 502 aggtgcaggagaagaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggc 561
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 506 aggtgcaggagaagaaagcagagcttgaagggaaaggagtgccgtcttcaaggtaagggc 447
Query: 562 tgggctccactgatctttcagaatgtccaagcaaattgctccattttggctgctgatgtt 621
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 446 tgggctccactgatctttcagaatatccaagcaaattgctccattttggctgctgatgtt 387
Query: 622 agggtgccatactttggtgatgaactgcatcttcggaggctcaaagggatatccaccggg 681
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aggatgccatactttggtgacaaactgcatcttcggaggctcaaagggatatccaccggg 327
Query: 682 caggcggatatcgatgacgaacgtgccgccctcgtaggggctgtcggcgggcccggcgat 741
|||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 326 gaggcggatgtcgatgacgaaggtgccgccctcgtaggggctgtcagcgggcccggcgat 267
Query: 742 ggtgccggtgaggtgggagatgttggcgccgtcgtggagcgcgatggagacgcccgatac 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 266 ggtgccggtgaggtgggagatgttggcgccgtcgtggagcgcgatggagacgcccgacac 207
Query: 802 ctcccggtcgcggttgcactcggtgagctccttctgcacgcgcgagacgtccaccatcct 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ctcccggtcgcggttgcactcggtgagctccttctgcacgcgcgagacgtccaccatcct 147
Query: 862 cgatcgatccc-tccttcctcgcggcgccgccgtcacctcctcctggctctcctcgggag 920
||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 146 cgatcgatcccttccttcctcgcggcgccgccgccacctcctcctggctctcgtcgggag 87
Query: 921 cggcgcgat 929
|||||||||
Sbjct: 86 cggcgcgat 78
>gb|AW744784.1|AW744784 LG1_384_C09.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 556
Score = 890 bits (449), Expect = 0.0
Identities = 501/517 (96%), Gaps = 1/517 (0%)
Strand = Plus / Minus
Query: 414 aggcctctgtccagtagcgagccgtagcggcaaatgttggatagtcacgcaggtactgtt 473
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 556 aggcctctgtccagtagcgagccgtagcagcaaatgttggatagtcacgcaggtactgtt 497
Query: 474 gggcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagcttgaaggg 533
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gtgcaacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagcttgaaggg 437
Query: 534 aaaggagagcagtcttcaaggtaagggctgggctccactgatctttcagaatgtccaagc 593
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 436 aaaggagtgccgtcttcaaggtaagggctgggctccactgatctttcagaatatccaagc 377
Query: 594 aaattgctccattttggctgctgatgttagggtgccatactttggtgatgaactgcatct 653
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 376 aaattgctccattttggctgctgatgttaggatgccatactttggtgacaaactgcatct 317
Query: 654 tcggaggctcaaagggatatccaccgggcaggcggatatcgatgacgaacgtgccgccct 713
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct: 316 tcggaggctcaaagggatatccaccggggaggcggatgtcgatgacgaaggtgccgccct 257
Query: 714 cgtaggggctgtcggcgggcccggcgatggtgccggtgaggtgggagatgttggcgccgt 773
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cgtaggggctgtcagcgggcccggcgatggtgccggtgaggtgggagatgttggcgccgt 197
Query: 774 cgtggagcgcgatggagacgcccgatacctcccggtcgcggttgcactcggtgagctcct 833
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 196 cgtggagcgcgatggagacgcccgacacctcccggtcgcggttgcactcggtgagctcct 137
Query: 834 tctgcacgcgcgagacgtccaccatcctcgatcgatccc-tccttcctcgcggcgccgcc 892
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 136 tctgcacgcgcgagacgtccaccatcctcgatcgatcccttccttcctcgcggcgccgcc 77
Query: 893 gtcacctcctcctggctctcctcgggagcggcgcgat 929
| |||||||||||||||||| ||||||||||||||||
Sbjct: 76 gccacctcctcctggctctcgtcgggagcggcgcgat 40
>gb|BE918962.1|BE918962 FM1_2_D02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 549
Score = 882 bits (445), Expect = 0.0
Identities = 497/513 (96%), Gaps = 1/513 (0%)
Strand = Plus / Minus
Query: 418 ctctgtccagtagcgagccgtagcggcaaatgttggatagtcacgcaggtactgttgggc 477
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 549 ctctgtccagtagcgagccgtagcagcaaatgttggatagtcacgcaggtactgttgtgc 490
Query: 478 aacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagcttgaagggaaag 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aacaacagcatcctgaggatcatcaggtgcaggagaagaaagcagagcttgaagggaaag 430
Query: 538 gagagcagtcttcaaggtaagggctgggctccactgatctttcagaatgtccaagcaaat 597
||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 429 gagtgccgtcttcaaggtaagggctgggctccactgatctttcagaatatccaagcaaat 370
Query: 598 tgctccattttggctgctgatgttagggtgccatactttggtgatgaactgcatcttcgg 657
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 369 tgctccattttggctgctgatgttaggatgccatactttggtgacaaactgcatcttcgg 310
Query: 658 aggctcaaagggatatccaccgggcaggcggatatcgatgacgaacgtgccgccctcgta 717
|||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 309 aggctcaaagggatatccaccggggaggcggatgtcgatgacgaaggtgccgccctcgta 250
Query: 718 ggggctgtcggcgggcccggcgatggtgccggtgaggtgggagatgttggcgccgtcgtg 777
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ggggctgtcagcgggcccggcgatggtgccggtgaggtgggagatgttggcgccgtcgtg 190
Query: 778 gagcgcgatggagacgcccgatacctcccggtcgcggttgcactcggtgagctccttctg 837
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gagcgcgatggagacgcccgacacctcccggtcgcggttgcactcggtgagctccttctg 130
Query: 838 cacgcgcgagacgtccaccatcctcgatcgatccc-tccttcctcgcggcgccgccgtca 896
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 129 cacgcgcgagacgtccaccatcctcgatcgatcccttccttcctcgcggcgccgccgcca 70
Query: 897 cctcctcctggctctcctcgggagcggcgcgat 929
|||||||||||||||| ||||||||||||||||
Sbjct: 69 cctcctcctggctctcgtcgggagcggcgcgat 37
>gb|BG947288.1|BG947288 IP1_3_G03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 519
Score = 803 bits (405), Expect = 0.0
Identities = 460/476 (96%), Gaps = 2/476 (0%)
Strand = Plus / Minus
Query: 455 tagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaa 514
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 519 tagtcacgcaggtactgttgg-caacaacagcatcntgaggatcatcaggtgcaggagaa 461
Query: 515 gaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggctccactga 574
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 460 gaaagcagagcttgaagggaaaggagtgccgtcttcaaggtaagggctgggctccactga 401
Query: 575 tctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggtgccatact 634
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 400 tctttcagaatatccaagcaaattgctccattttggctgctgatgttaggatgccatact 341
Query: 635 ttggtgatgaactgcatcttcggaggctcaaagggatatccaccgggcaggcggatatcg 694
||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 340 ttggtgacaaactgcatcttcggaggctcaaagggatatccaccggggaggcggatgtcg 281
Query: 695 atgacgaacgtgccgccctcgtaggggctgtcggcgggcccggcgatggtgccggtgagg 754
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 280 atgacgaaggtgccgccctcgtaggggctgtcagcgggcccggcgatggtgccggtgagg 221
Query: 755 tgggagatgttggcgccgtcgtggagcgcgatggagacgcccgatacctcccggtcgcgg 814
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 220 tgggagatgttggcgccgtcgtggagcgcgatggagacgcccgacacctcccggtcgcgg 161
Query: 815 ttgcactcggtgagctccttctgcacgcgcgagacgtccaccatcctcgatcgatccc-t 873
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 160 ttgcactcggtgagctccttctgcacgcgcgagacgtccaccatcctcgatcgatccctt 101
Query: 874 ccttcctcgcggcgccgccgtcacctcctcctggctctcctcgggagcggcgcgat 929
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 100 ccttcctcgcggcgccgccgccacctcctcctggctctcgtcgggagcggcgcgat 45
>gb|AW744816.1|AW744816 LG1_384_C09.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 589
Score = 646 bits (326), Expect = 0.0
Identities = 380/398 (95%)
Strand = Plus / Minus
Query: 275 ccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcactt 334
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||| ||||
Sbjct: 398 ccagagcagagcttttcaagagccatgttctcatcgccatccacactcttcagggtactt 339
Query: 335 ctcacctgatcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgccc 394
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ctcaccaggtcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgcca 279
Query: 395 gttgatgcactcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttgga 454
||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 278 gttgacgcactctttgcgaaggcctctgtccagtagcgagccgtagcagcaaatgttgga 219
Query: 455 tagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaa 514
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tagtcacgcaggtactgttgtgcaacaacagcatcctgaggatcatcaggtgcaggagaa 159
Query: 515 gaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggctccactga 574
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 158 gaaagcagagcttgaagggaaaggagtgccgtcttcaaggtaagggctgggctccactga 99
Query: 575 tctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggtgccatact 634
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 98 tctttcagaatatccaagcaaattgctccattttggctgctgatgttaggatgccatact 39
Query: 635 ttggtgatgaactgcatcttcggaggctcaaagggata 672
||||||| |||||||||||||||||||||||||||||
Sbjct: 38 ttggtgacaaactgcatcttcggaggctcaaagggata 1
Score = 63.9 bits (32), Expect = 3e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 189 tgaaatggctgagcaggagcattagcaggcactgtg 224
||||||||||||||||||||||||||||||| ||||
Sbjct: 497 tgaaatggctgagcaggagcattagcaggcattgtg 462
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 152 tcactccagtcccatgggccatggcacg 179
|||||| |||||||||||||||||||||
Sbjct: 564 tcactcgagtcccatgggccatggcacg 537
>gb|BE918818.1|BE918818 FM1_2_D02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 605
Score = 632 bits (319), Expect = e-179
Identities = 373/391 (95%)
Strand = Plus / Minus
Query: 275 ccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcactt 334
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||| ||||
Sbjct: 391 ccagagcagagcttttcaagagccatgttctcatcgccatccacactcttcagggtactt 332
Query: 335 ctcacctgatcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgccc 394
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctcaccaggtcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgcca 272
Query: 395 gttgatgcactcttcgcaaaggcctctgtccagtagcgagccgtagcggcaaatgttgga 454
||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 271 gttgacgcactctttgcgaaggcctctgtccagtagcgagccgtagcagcaaatgttgga 212
Query: 455 tagtcacgcaggtactgttgggcaacaacagcatcctgaggatcatcaggtgcaggagaa 514
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tagtcacgcaggtactgttgtgcaacaacagcatcctgaggatcatcaggtgcaggagaa 152
Query: 515 gaaagcagagcttgaagggaaaggagagcagtcttcaaggtaagggctgggctccactga 574
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 151 gaaagcagagcttgaagggaaaggagtgccgtcttcaaggtaagggctgggctccactga 92
Query: 575 tctttcagaatgtccaagcaaattgctccattttggctgctgatgttagggtgccatact 634
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 91 tctttcagaatatccaagcaaattgctccattttggctgctgatgttaggatgccatact 32
Query: 635 ttggtgatgaactgcatcttcggaggctcaa 665
||||||| ||||||||||||||||||||||
Sbjct: 31 ttggtgacaaactgcatcttcggaggctcaa 1
Score = 63.9 bits (32), Expect = 3e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 189 tgaaatggctgagcaggagcattagcaggcactgtg 224
||||||||||||||||||||||||||||||| ||||
Sbjct: 490 tgaaatggctgagcaggagcattagcaggcattgtg 455
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 152 tcactccagtcccatgggccatggcacg 179
|||||| |||||||||||||||||||||
Sbjct: 557 tcactcgagtcccatgggccatggcacg 530
>gb|BI139854.1|BI139854 IP1_46_D07.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 306
Score = 446 bits (225), Expect = e-123
Identities = 262/273 (95%), Gaps = 1/273 (0%)
Strand = Plus / Minus
Query: 658 aggctcaaagggatatccaccgggcaggcggatatcgatgacgaacgtgccgccctcgta 717
|||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 306 aggctcaaagggatatccaccggggaggcggatgtcgatgacgaaggtgccgccctcgta 247
Query: 718 ggggctgtcggcgggcccggcgatggtgccggtgaggtgggagatgttggcgccgtcgtg 777
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 246 ggggctgtcagcgggcccggcgatggtgccggtgaggtgggagatgttggcaccgtcgtg 187
Query: 778 gagcgcgatggagacgcccgatacctcccggtcgcggttgcactcggtgagctccttctg 837
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 186 gagcgcgatggagacgcccgacacctcccggtcgcggttgcactcggtgagctccttctg 127
Query: 838 cacgcgcgagacgtccaccatcctcgatcgatccc-tccttcctcgcggcgccgccgtca 896
|||||||||||||||||||||| | |||||||||| ||||||||||||||||||||| ||
Sbjct: 126 cacgcgcgagacgtccaccatcgtagatcgatcccttccttcctcgcggcgccgccgcca 67
Query: 897 cctcctcctggctctcctcgggagcggcgcgat 929
|||||||||||||||| ||||||||||||||||
Sbjct: 66 cctcctcctggctctcgtcgggagcggcgcgat 34
>gb|CW284518.1|CW284518 104_761_11409830_148_35496_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11409830, DNA
sequence
Length = 588
Score = 436 bits (220), Expect = e-120
Identities = 248/256 (96%), Gaps = 1/256 (0%)
Strand = Plus / Minus
Query: 675 caccgggcaggcggatatcgatgacgaacgtgccgccctcgtaggggctgtcggcgggcc 734
||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 518 caccggggaggcggatgtcgatgacgaaggtgccgccctcgtaggggctgtcagcgggcc 459
Query: 735 cggcgatggtgccggtgaggtgggagatgttggcgccgtcgtggagcgcgatggagacgc 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cggcgatggtgccggtgaggtgggagatgttggcgccgtcgtggagcgcgatggagacgc 399
Query: 795 ccgatacctcccggtcgcggttgcactcggtgagctccttctgcacgcgcgagacgtcca 854
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ccgacacctcccggtcgcggttgcactcggtgagctccttctgcacgcgcgagacgtcca 339
Query: 855 ccatcctcgatcgatccc-tccttcctcgcggcgccgccgtcacctcctcctggctctcc 913
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 338 ccatcctcgatcgatcccttccttcctcgcggcgccgccgccacctcctcctggctctcg 279
Query: 914 tcgggagcggcgcgat 929
||||||||||||||||
Sbjct: 278 tcgggagcggcgcgat 263
>gb|CW123334.1|CW123334 104_502_11111159_116_34687_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11111159, DNA
sequence
Length = 460
Score = 410 bits (207), Expect = e-113
Identities = 232/239 (97%), Gaps = 1/239 (0%)
Strand = Plus / Plus
Query: 675 caccgggcaggcggatatcgatgacgaacgtgccgccctcgtaggggctgtcggcgggcc 734
||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 219 caccggggaggcggatgtcgatgacgaaggtgccgccctcgtaggggctgtcagcgggcc 278
Query: 735 cggcgatggtgccggtgaggtgggagatgttggcgccgtcgtggagcgcgatggagacgc 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cggcgatggtgccggtgaggtgggagatgttggcgccgtcgtggagcgcgatggagacgc 338
Query: 795 ccgatacctcccggtcgcggttgcactcggtgagctccttctgcacgcgcgagacgtcca 854
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ccgacacctcccggtcgcggttgcactcggtgagctccttctgcacgcgcgagacgtcca 398
Query: 855 ccatcctcgatcgatccc-tccttcctcgcggcgccgccgtcacctcctcctggctctc 912
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 399 ccatcctcgatcgatcccttccttcctcgcggcgccgccgccacctcctcctggctctc 457
>gb|BZ412886.1|BZ412886 165d4_ctg1 Subclones from BAC clones mapped to Sorghum bicolor
chromosome 3 Sorghum bicolor genomic clone 165d4, DNA
sequence
Length = 659
Score = 345 bits (174), Expect = 5e-093
Identities = 236/255 (92%), Gaps = 2/255 (0%)
Strand = Plus / Minus
Query: 677 ccgggcaggcggatatcgatgacgaacgtgccgccctcgtaggggctgtcggcgggccc- 735
||||| ||||| || |||||||| || |||||||| |||||||||||| ||||||||
Sbjct: 490 ccggggaggcgaatgtcgatgaccaagtcgccgcccttgtaggggctgtcagcgggcccc 431
Query: 736 ggcgatggtgccggtgaggtgggagatgttggcgccgtcgtggagcgcgatggagacgcc 795
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 430 ggcgatggtgccggtgaggtggaagatgttggccccgtcgtggagcgcgatggagacgcc 371
Query: 796 cgatacctcccggtcgcggttgcactcggtgagctccttctgcacgcgcgagacgtccac 855
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cgacacctcccggtcgcggttgcactcggtgagctccttctgcacgcgcgagacgtccac 311
Query: 856 catcctcgatcgatccc-tccttcctcgcggcgccgccgtcacctcctcctggctctcct 914
||||||||||||||||| |||||||| | || ||||||| |||||||||||||||||| |
Sbjct: 310 catcctcgatcgatcccttccttcctngnggngccgccgccacctcctcctggctctcgt 251
Query: 915 cgggagcggcgcgat 929
|||||||||||||||
Sbjct: 250 cgggagcggcgcgat 236
>gb|BG947201.1|BG947201 IP1_3_G03.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 508
Score = 210 bits (106), Expect = 2e-052
Identities = 133/142 (93%)
Strand = Plus / Minus
Query: 275 ccagagcagagcttttcgagagccatgttctcgtcgccatccacgctcttcagggcactt 334
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||| ||||
Sbjct: 142 ccagagcagagcttttcaagagccatgttctcatcgccatccacactcttcagggtactt 83
Query: 335 ctcacctgatcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgccc 394
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 ctcaccaggtcctctgggaagcccatctcaaccagcttctgcaccttctcttccatgcca 23
Query: 395 gttgatgcactcttcgcaaagg 416
||||| |||||||| |||||||
Sbjct: 22 gttgacgcactctttgcaaagg 1
Score = 83.8 bits (42), Expect = 3e-014
Identities = 80/92 (86%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 29 atgtcaacctcatgtttcctttgcatcagatattaccagggttccatggtccaagagt-- 86
||||||| || ||||||| |||||||||||||||||||| ||||||||| | ||||||
Sbjct: 451 atgtcaatctgatgtttcttttgcatcagatattaccagagttccatgggcaaagagttg 392
Query: 87 -cgattcagcctaccagacacaacagcaaaag 117
||||||| ||||||||||||| ||||||||
Sbjct: 391 atgattcaggctaccagacacaaaagcaaaag 360
Score = 63.9 bits (32), Expect = 3e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 189 tgaaatggctgagcaggagcattagcaggcactgtg 224
||||||||||||||||||||||||||||||| ||||
Sbjct: 241 tgaaatggctgagcaggagcattagcaggcattgtg 206
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 152 tcactccagtcccatgggccatggcacg 179
|||||| |||||||||||||||||||||
Sbjct: 308 tcactcgagtcccatgggccatggcacg 281
>gb|CW284517.1|CW284517 104_761_11409830_116_35492_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11409830, DNA
sequence
Length = 647
Score = 155 bits (78), Expect = 9e-036
Identities = 90/94 (95%)
Strand = Plus / Plus
Query: 675 caccgggcaggcggatatcgatgacgaacgtgccgccctcgtaggggctgtcggcgggcc 734
||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 554 caccggggaggcggatgtcgatgacgaaggtgccgccctcgtaggggctgtcagcgggcc 613
Query: 735 cggcgatggtgccggtgaggtgggagatgttggc 768
||||||||||||||||||||||||||||||||||
Sbjct: 614 cggcgatggtgccggtgaggtgggagatgttggc 647
>gb|BG322862.1|BG322862 EM1_15_A11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 592
Score = 73.8 bits (37), Expect = 3e-011
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 321 tcttcagggcacttctcacctgatcctctgggaagcccatctcaaccagcttctgcacct 380
||||||||||||| |||| | |||||||| | ||||||||| |||||| |||| |||||
Sbjct: 488 tcttcagggcactgctcatcggatcctctagaaagcccatcacaaccaacttcaacacct 429
Query: 381 tctcttccatgcc 393
|||||||||||||
Sbjct: 428 tctcttccatgcc 416
>gb|BG323115.1|BG323115 EM1_15_A11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 652
Score = 73.8 bits (37), Expect = 3e-011
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 321 tcttcagggcacttctcacctgatcctctgggaagcccatctcaaccagcttctgcacct 380
||||||||||||| |||| | |||||||| | ||||||||| |||||| |||| |||||
Sbjct: 182 tcttcagggcactgctcatcggatcctctagaaagcccatcacaaccaacttcaacacct 123
Query: 381 tctcttccatgcc 393
|||||||||||||
Sbjct: 122 tctcttccatgcc 110
>gb|CN132421.1|CN132421 OX1_6_C08.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_6_C08_A002 3', mRNA sequence
Length = 454
Score = 60.0 bits (30), Expect = 4e-007
Identities = 77/92 (83%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 29 atgtcaacctcatgtttcctttgcatcagatattaccagggttccatggtccaagagt-- 86
||||||| || ||||||| |||||||||||||||||||| |||||||| | || |||
Sbjct: 310 atgtcaatctgatgtttcttttgcatcagatattaccagaattccatgggcaaaaagttg 251
Query: 87 -cgattcagcctaccagacacaacagcaaaag 117
||||||| |||||||||||| ||||||||
Sbjct: 250 atgattcagggtaccagacacaaaagcaaaag 219
Score = 56.0 bits (28), Expect = 6e-006
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 152 tcactccagtcccatgggccatggcacg 179
||||||||||||||||||||||||||||
Sbjct: 167 tcactccagtcccatgggccatggcacg 140
Score = 56.0 bits (28), Expect = 6e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 189 tgaaatggctgagcaggagcattagcaggcactgtg 224
|||||||||||| |||||||||||||||||| ||||
Sbjct: 100 tgaaatggctgaacaggagcattagcaggcattgtg 65
>gb|CW258775.1|CW258775 104_724_11228060_148_35169_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228060, DNA
sequence
Length = 591
Score = 58.0 bits (29), Expect = 2e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 320 ctcttcagggcacttctcacctgatcctctgggaagcccatctcaaccagcttctgcacc 379
|||||||||||| | |||| | |||||||||| |||||||||||| ||| |||| |||||
Sbjct: 103 ctcttcagggcattgctcatcagatcctctggaaagcccatctcagccaacttcagcacc 162
Query: 380 t 380
|
Sbjct: 163 t 163
Score = 56.0 bits (28), Expect = 6e-006
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 377 accttctcttccatgcccgttgatgcactcttcgcaaaggcctctgtccagtagcgagcc 436
||||||||||||||||| || || ||||||| | ||| || |||||| |||| |||
Sbjct: 254 accttctcttccatgccagtggacacactctttgtgaagaccaatgtccattagctagct 313
Query: 437 gtagcggcaaatgttggatagtcacgcaggta 468
||||| || ||||||||||||| |||||||||
Sbjct: 314 gtagcagcgaatgttggatagttacgcaggta 345
>gb|CL173006.1|CL173006 104_376_10890577_116_31795_097 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890577, DNA
sequence
Length = 760
Score = 50.1 bits (25), Expect = 4e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 321 tcttcagggcacttctcacctgatcctctgggaagcccatctcaaccagcttc 373
||||||||||||| |||| | |||||||| | ||||||||| |||||| ||||
Sbjct: 34 tcttcagggcactgctcatcggatcctctagaaagcccatcacaaccaacttc 86
>gb|CL186515.1|CL186515 104_401_10900261_114_32408_057 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900261, DNA
sequence
Length = 343
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 886 cgccgccgtcacctcctcct 905
||||||||||||||||||||
Sbjct: 80 cgccgccgtcacctcctcct 99
>gb|CW165554.1|CW165554 104_574_11152566_148_36479_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152566, DNA
sequence
Length = 684
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 886 cgccgccgtcacctcctcct 905
||||||||||||||||||||
Sbjct: 557 cgccgccgtcacctcctcct 576
>gb|CW449190.1|CW449190 fsbb001f183d12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f183d12, DNA
sequence
Length = 470
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 886 cgccgccgtcacctcctcct 905
||||||||||||||||||||
Sbjct: 459 cgccgccgtcacctcctcct 440
>gb|CW476194.1|CW476194 fsbb001f232p01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f232p01, DNA
sequence
Length = 543
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 304 ctcgtcgccatccacgctct 323
||||||||||||||||||||
Sbjct: 308 ctcgtcgccatccacgctct 327
>gb|CD204727.1|CD204727 HS1_9_G05.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_9_G05_A012 5', mRNA sequence
Length = 608
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 886 cgccgccgtcacctcctcct 905
||||||||||||||||||||
Sbjct: 192 cgccgccgtcacctcctcct 211
>gb|CD226019.1|CD226019 CCC1_42_E04.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_42_E04_A007 5', mRNA sequence
Length = 663
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 886 cgccgccgtcacctcctcct 905
||||||||||||||||||||
Sbjct: 161 cgccgccgtcacctcctcct 180
>gb|CD229226.1|CD229226 CCC1_13_C04.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_13_C04_A007 5', mRNA sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 886 cgccgccgtcacctcctcct 905
||||||||||||||||||||
Sbjct: 244 cgccgccgtcacctcctcct 263
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 275,124
Number of Sequences: 832831
Number of extensions: 275124
Number of successful extensions: 78512
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78458
Number of HSP's gapped (non-prelim): 42
length of query: 945
length of database: 491,359,669
effective HSP length: 20
effective length of query: 925
effective length of database: 474,703,049
effective search space: 439100320325
effective search space used: 439100320325
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)