BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405087.2.1
(737 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW435810.1|CW435810 fsbb001f152c06k0 Sorghum methylation... 529 e-148
gb|CL184321.1|CL184321 104_397_10898775_114_32360_056 Sorgh... 313 1e-083
gb|CW078961.1|CW078961 104_397_10898775_114_32380_056 Sorgh... 264 1e-068
gb|CX614951.1|CX614951 GABR1_17_F12.b1_A002 GA- or brassino... 198 5e-049
gb|BE364125.1|BE364125 PI1_11_D07.g1_A002 Pathogen induced ... 188 5e-046
gb|CN130960.1|CN130960 RHOH1_45_B03.b1_A002 Acid- and alkal... 176 2e-042
gb|BG463033.1|BG463033 EM1_46_F12.g1_A002 Embryo 1 (EM1) So... 143 3e-032
gb|BI099230.1|BI099230 IP1_40_A12.g1_A002 Immature pannicle... 129 4e-028
gb|BG050643.1|BG050643 FM1_70_H01.g1_A003 Floral-Induced Me... 107 1e-021
gb|BG462976.1|BG462976 EM1_46_A04.g1_A002 Embryo 1 (EM1) So... 86 5e-015
gb|BG050804.1|BG050804 FM1_70_H01.b1_A003 Floral-Induced Me... 82 8e-014
gb|BE598152.1|BE598152 PI1_66_C12.b1_A002 Pathogen induced ... 56 5e-006
gb|BF422126.1|BF422126 FM1_12_B10.b1_A003 Floral-Induced Me... 56 5e-006
gb|BI099139.1|BI099139 IP1_38_B12.g1_A002 Immature pannicle... 44 0.018
>gb|CW435810.1|CW435810 fsbb001f152c06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f152c06, DNA
sequence
Length = 735
Score = 529 bits (267), Expect = e-148
Identities = 312/327 (95%)
Strand = Plus / Minus
Query: 281 atatcagaaatacattcactgctactatctggaggcatgcttcccactgattttgatgct 340
|||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 734 atatcagagataaattcactgctattatctggtggcatgcttcccactgattttgatgct 675
Query: 341 ttcatctgcaatagtgggagtaacatttactatccttcacattccagagaaacgtcaaac 400
||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |||||
Sbjct: 674 ttcatctgcaatagtgggagtaacatttactatccttcatattccggtgaaacaccaaac 615
Query: 401 aactccaagattacatttgcattagatcaaaatcaccagtcacatattgagtatcgttgg 460
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 614 aactccaagattacatttgcattagatcaaaatcaccagtcacatatcgagtatcgttgg 555
Query: 461 ggaggagaaggcctaaggaaatatcttgtgaagtgggccacttcagtggtagaaagaaag 520
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ggaggagaaggactaaggaaatatcttgtgaagtgggccacttcagtggtagaaagaaag 495
Query: 521 ggaagaacagagagacaaattatttttgaagatccagagcactcttcggcgtattgtctt 580
|||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||||
Sbjct: 494 ggaagaacagagaggcaaattatttttgaagatccagaacactcttcagcctattgtctt 435
Query: 581 gcatttagagtggttaatcccaatcat 607
|||||||||||||||||||||||||||
Sbjct: 434 gcatttagagtggttaatcccaatcat 408
Score = 226 bits (114), Expect = 2e-057
Identities = 126/130 (96%)
Strand = Plus / Minus
Query: 608 cttcctcctttaaaggagttgaggaagttgatgagaatccaatctctccgttgcaatgca 667
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 cttcctcctttaaaggaattgaggaagttgatgagaatccaatctctccgttgcaatgca 222
Query: 668 ttatataaccacagcgctaccagattatctgtagtccctatccacgcatcacgctctcag 727
|| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 221 ttgtataaccacagcgctaccagattatctgtagtccctatccacgcatcaagatctcag 162
Query: 728 gctctaaggt 737
||||||||||
Sbjct: 161 gctctaaggt 152
>gb|CL184321.1|CL184321 104_397_10898775_114_32360_056 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898775, DNA
sequence
Length = 656
Score = 313 bits (158), Expect = 1e-083
Identities = 176/182 (96%)
Strand = Plus / Minus
Query: 1 cagagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaatta 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 182 cagagagaatggactgacaaatattcaccgattctcgtggcctgaacattgcaagaatta 123
Query: 61 cctgtcaaggatactaactcttggcccaaggtctcctgctattggtaacagagaggagcg 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 cctgtcaaggatattaactcttggcccaaggtctcctgctattggtaacagagaggagcg 63
Query: 121 gagtaatacacctatttcaggaaggaagaatatcattgttatttctgtagactctgttaa 180
|||||||||||||||||||||||||| | | ||||||||||| |||||||||||||||||
Sbjct: 62 gagtaatacacctatttcaggaaggaggcaaatcattgttatctctgtagactctgttaa 3
Query: 181 ca 182
||
Sbjct: 2 ca 1
>gb|CW078961.1|CW078961 104_397_10898775_114_32380_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898775, DNA
sequence
Length = 683
Score = 264 bits (133), Expect = 1e-068
Identities = 168/177 (94%), Gaps = 2/177 (1%)
Strand = Plus / Minus
Query: 1 cagagagaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaatta 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 178 cagagagaatggactgacaaatattcaccgattctcgtggcctgaacattgcaagaatta 119
Query: 61 cctgtcaaggatactaactcttggcccaaggtctcctgctattggtaacagagaggagcg 120
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 118 cctgtcaaggatattaactcttggcccaaggtctcctgctatt-gtaacagagaggagcg 60
Query: 121 gagtaatacacctatttcaggaaggaagaatatcattgttatttctgtagactctgt 177
|||||||||||||||||||||||||| | | |||| |||||| |||||||| |||||
Sbjct: 59 gagtaatacacctatttcaggaaggaggcaaatca-tgttatctctgtagaatctgt 4
>gb|CX614951.1|CX614951 GABR1_17_F12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_17_F12_A002 3', mRNA sequence
Length = 740
Score = 198 bits (100), Expect = 5e-049
Identities = 109/112 (97%)
Strand = Plus / Plus
Query: 626 ttgaggaagttgatgagaatccaatctctccgttgcaatgcattatataaccacagcgct 685
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 92 ttgaggaagttgatgagaatccaatctctccgttgcaatgcattgtataaccacagcgct 151
Query: 686 accagattatctgtagtccctatccacgcatcacgctctcaggctctaaggt 737
||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 152 accagattatctgtagtccctatccacgcatcaagatctcaggctctaaggt 203
Score = 135 bits (68), Expect = 6e-030
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 520 gggaagaacagagagacaaattatttttgaagatccagagcactcttcggcgtattgtct 579
||||||||||||||| ||||||||| ||||||||||||| |||||||| || ||||||||
Sbjct: 1 gggaagaacagagaggcaaattattcttgaagatccagaacactcttcagcctattgtct 60
Query: 580 tgcatttagagtggttaatcccaatcat 607
||||||||||||||||||||||||||||
Sbjct: 61 tgcatttagagtggttaatcccaatcat 88
>gb|BE364125.1|BE364125 PI1_11_D07.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 653
Score = 188 bits (95), Expect = 5e-046
Identities = 269/327 (82%)
Strand = Plus / Plus
Query: 411 ttacatttgcattagatcaaaatcaccagtcacatattgagtatcgttggggaggagaag 470
||||||||||||| || || || ||| |||||||| ||||||||||||||||||||||
Sbjct: 26 ttacatttgcattggaccataactaccgatcacatatcgagtatcgttggggaggagaag 85
Query: 471 gcctaaggaaatatcttgtgaagtgggccacttcagtggtagaaagaaagggaagaacag 530
| ||||||| || | || |||||||| ||||||| |||||||||| ||| |||||||
Sbjct: 86 gtttaaggaagtacttagttaagtgggcttcttcagtagtagaaagaagggggagaacag 145
Query: 531 agagacaaattatttttgaagatccagagcactcttcggcgtattgtcttgcatttagag 590
| | ||||| || ||||||||| |||| |||||||| | |||||||||||||||||||
Sbjct: 146 aaaagcaaatcatctttgaagattcagaacactcttcaacatattgtcttgcatttagag 205
Query: 591 tggttaatcccaatcatcttcctcctttaaaggagttgaggaagttgatgagaatccaat 650
|||||||||| |||||| | |||||||| |||||| || ||||||||||||||||| |
Sbjct: 206 tggttaatccaaatcatttgcctcctttgaaggagctgcaaaagttgatgagaatccagt 265
Query: 651 ctctccgttgcaatgcattatataaccacagcgctaccagattatctgtagtccctatcc 710
| || ||||| |||| | |||||||| |||| ||||| |||||||| | || || |
Sbjct: 266 cactgcgttgtcatgctctgtataaccatggcgccaccaggctatctgtaattccaattc 325
Query: 711 acgcatcacgctctcaggctctaaggt 737
| ||||| || ||||||||||||||||
Sbjct: 326 atgcatcgcgatctcaggctctaaggt 352
>gb|CN130960.1|CN130960 RHOH1_45_B03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_45_B03_A002 3', mRNA sequence
Length = 836
Score = 176 bits (89), Expect = 2e-042
Identities = 341/425 (80%)
Strand = Plus / Plus
Query: 313 aggcatgcttcccactgattttgatgctttcatctgcaatagtgggagtaacatttacta 372
||||||||| || ||||| |||||||| || || ||||||||||||||| | || || ||
Sbjct: 11 aggcatgctccctactgactttgatgcctttatatgcaatagtgggagtgatatatatta 70
Query: 373 tccttcacattccagagaaacgtcaaacaactccaagattacatttgcattagatcaaaa 432
||| ||||| || || || | ||| ||| ||| ||||||||||||| || || ||
Sbjct: 71 tccatcacaatctagtgatgtgccaagcaattcccgtgttacatttgcattggaccataa 130
Query: 433 tcaccagtcacatattgagtatcgttggggaggagaaggcctaaggaaatatcttgtgaa 492
||| |||||||| ||||||||||||||||||||||| ||||||| || | || ||
Sbjct: 131 ctaccgatcacatatcgagtatcgttggggaggagaaggtttaaggaagtacttagttaa 190
Query: 493 gtgggccacttcagtggtagaaagaaagggaagaacagagagacaaattatttttgaaga 552
|||||| ||||||| |||||||||| ||| |||||||| | ||||| || ||||||||
Sbjct: 191 gtgggcttcttcagtagtagaaagaagggggagaacagaaaagcaaatcatctttgaaga 250
Query: 553 tccagagcactcttcggcgtattgtcttgcatttagagtggttaatcccaatcatcttcc 612
| |||| |||||||| | ||| ||||||||||||||||||||||||| |||||| | ||
Sbjct: 251 ttcagaacactcttcaacatatcgtcttgcatttagagtggttaatccaaatcatttgcc 310
Query: 613 tcctttaaaggagttgaggaagttgatgagaatccaatctctccgttgcaatgcattata 672
|||||| |||||| || ||||||||||||||||| || || ||||| |||| | ||
Sbjct: 311 tcctttgaaggagctgcaaaagttgatgagaatccagtcactgcgttgtcatgctctgta 370
Query: 673 taaccacagcgctaccagattatctgtagtccctatccacgcatcacgctctcaggctct 732
|||||| |||| |||| |||||||| | || || || ||||| || |||||||||||
Sbjct: 371 taaccatggcgccgccaggctatctgtaattccaattcatgcatcgcgatctcaggctct 430
Query: 733 aaggt 737
|||||
Sbjct: 431 aaggt 435
>gb|BG463033.1|BG463033 EM1_46_F12.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 648
Score = 143 bits (72), Expect = 3e-032
Identities = 81/84 (96%)
Strand = Plus / Plus
Query: 654 tccgttgcaatgcattatataaccacagcgctaccagattatctgtagtccctatccacg 713
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccgttgcaatgcattgtataaccacagcgctaccagattatctgtagtccctatccacg 60
Query: 714 catcacgctctcaggctctaaggt 737
||||| | ||||||||||||||||
Sbjct: 61 catcaagatctcaggctctaaggt 84
>gb|BI099230.1|BI099230 IP1_40_A12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 630
Score = 129 bits (65), Expect = 4e-028
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 661 caatgcattatataaccacagcgctaccagattatctgtagtccctatccacgcatcacg 720
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1 caatgcattgtataaccacagcgctaccagattatctgtagtccctatccacgcatcaag 60
Query: 721 ctctcaggctctaaggt 737
||||||||||||||||
Sbjct: 61 atctcaggctctaaggt 77
>gb|BG050643.1|BG050643 FM1_70_H01.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 461
Score = 107 bits (54), Expect = 1e-021
Identities = 138/166 (83%)
Strand = Plus / Plus
Query: 572 tattgtcttgcatttagagtggttaatcccaatcatcttcctcctttaaaggagttgagg 631
||||||||||||||||||||||||||||| |||||| | |||||||| |||||| ||
Sbjct: 8 tattgtcttgcatttagagtggttaatccaaatcatttgcctcctttgaaggagctgcaa 67
Query: 632 aagttgatgagaatccaatctctccgttgcaatgcattatataaccacagcgctaccaga 691
||||||||||||||||| || || ||||| |||| | |||||||| |||| |||||
Sbjct: 68 aagttgatgagaatccagtcactgcgttgtcatgctctgtataaccatggcgccaccagg 127
Query: 692 ttatctgtagtccctatccacgcatcacgctctcaggctctaaggt 737
|||||||| | || || || ||||| || ||||||||||||||||
Sbjct: 128 ctatctgtaattccaattcatgcatcgcgatctcaggctctaaggt 173
>gb|BG462976.1|BG462976 EM1_46_A04.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 613
Score = 85.7 bits (43), Expect = 5e-015
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 687 ccagattatctgtagtccctatccacgcatcacgctctcaggctctaaggt 737
|||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 1 ccagattatctgtagtccctatccacgcatcaagatctcaggctctaaggt 51
>gb|BG050804.1|BG050804 FM1_70_H01.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 438
Score = 81.8 bits (41), Expect = 8e-014
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 26 caccaattctcgtggcctgaacattgcaagaattacctgtcaaggatactaactcttggc 85
|||||||| || |||||||||||||||||||||||| ||||||||||| ||||||| ||
Sbjct: 12 caccaattttcttggcctgaacattgcaagaattacttgtcaaggatattaactctgggt 71
Query: 86 ccaag 90
|||||
Sbjct: 72 ccaag 76
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 143 aggaagaatatcattgttatttctgtagactctgttaacaaggaag 188
|||||| |||| |||||||| |||||||||| |||||||||||||
Sbjct: 126 aggaagcatatatttgttattgctgtagactccgttaacaaggaag 171
Score = 50.1 bits (25), Expect = 3e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 313 aggcatgcttcccactgattttgatgctttcatctgcaatagtgggagt 361
||||||||| || ||||| |||||||| || || |||||||||||||||
Sbjct: 296 aggcatgctccctactgactttgatgcctttatatgcaatagtgggagt 344
>gb|BE598152.1|BE598152 PI1_66_C12.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 517
Score = 56.0 bits (28), Expect = 5e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 6 agaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaa 57
||||||| |||| ||| || || ||||| |||||||||||||||||||||||
Sbjct: 132 agaatggtctgaaaaacatccatcaattttcgtggcctgaacattgcaagaa 183
>gb|BF422126.1|BF422126 FM1_12_B10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 492
Score = 56.0 bits (28), Expect = 5e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 6 agaatggactgacaaatattcaccaattctcgtggcctgaacattgcaagaa 57
||||||| |||| ||| || || ||||| |||||||||||||||||||||||
Sbjct: 107 agaatggtctgaaaaacatccatcaattttcgtggcctgaacattgcaagaa 158
>gb|BI099139.1|BI099139 IP1_38_B12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 583
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 708 tccacgcatcacgctctcaggctctaaggt 737
||||||||||| | ||||||||||||||||
Sbjct: 1 tccacgcatcaagatctcaggctctaaggt 30
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 195,180
Number of Sequences: 832831
Number of extensions: 195180
Number of successful extensions: 50953
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50927
Number of HSP's gapped (non-prelim): 22
length of query: 737
length of database: 491,359,669
effective HSP length: 20
effective length of query: 717
effective length of database: 474,703,049
effective search space: 340362086133
effective search space used: 340362086133
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)