BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405010.2.1
(1644 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE357480.1|BE357480 DG1_20_C08.b2_A002 Dark Grown 1 (DG1... 967 0.0
gb|CD205706.1|CD205706 HS1_15_C10.g1_A012 Heat-shocked seed... 876 0.0
gb|AW922690.1|AW922690 DG1_45_F09.b1_A002 Dark Grown 1 (DG1... 829 0.0
gb|CX622737.1|CX622737 GABR1_65_E07.g1_A002 GA- or brassino... 817 0.0
gb|BE125379.1|BE125379 DG1_20_C08.b1_A002 Dark Grown 1 (DG1... 700 0.0
gb|BE361030.1|BE361030 DG1_69_A08.b1_A002 Dark Grown 1 (DG1... 700 0.0
gb|CD205594.1|CD205594 HS1_15_C10.b1_A012 Heat-shocked seed... 688 0.0
gb|BE355651.1|BE355651 DG1_115_B10.g1_A002 Dark Grown 1 (DG... 656 0.0
gb|BE355578.1|BE355578 DG1_115_A10.b1_A002 Dark Grown 1 (DG... 617 e-174
gb|BE355588.1|BE355588 DG1_115_B10.b1_A002 Dark Grown 1 (DG... 615 e-174
gb|BG462772.1|BG462772 EM1_45_D05.b1_A002 Embryo 1 (EM1) So... 613 e-173
gb|BG560112.1|BG560112 RHIZ2_69_E05.b1_A003 Rhizome2 (RHIZ2... 603 e-170
gb|BE125565.1|BE125565 DG1_28_C08.b1_A002 Dark Grown 1 (DG1... 585 e-165
gb|BE355648.1|BE355648 DG1_115_A10.g1_A002 Dark Grown 1 (DG... 585 e-165
gb|AW922573.1|AW922573 DG1_45_F09.g1_A002 Dark Grown 1 (DG1... 537 e-150
gb|BG462847.1|BG462847 EM1_45_D05.g1_A002 Embryo 1 (EM1) So... 502 e-140
gb|BF704800.1|BF704800 FM1_51_F11.b1_A003 Floral-Induced Me... 486 e-135
gb|CW167518.1|CW167518 104_576_11153646_148_36488_019 Sorgh... 452 e-125
gb|CX622653.1|CX622653 GABR1_65_E07.b1_A002 GA- or brassino... 418 e-115
gb|BF656569.1|BF656569 FM1_51_F11.g1_A003 Floral-Induced Me... 410 e-112
gb|AW922542.1|AW922542 DG1_20_C08.g1_A002 Dark Grown 1 (DG1... 396 e-108
gb|BG932924.1|BG932924 DG1_69_A08.g1_A002 Dark Grown 1 (DG1... 325 7e-087
gb|BI141578.1|BI141578 IP1_54_C03.b1_A002 Immature pannicle... 264 2e-068
gb|CW167517.1|CW167517 104_576_11153646_116_36487_019 Sorgh... 202 7e-050
gb|BZ412914.1|BZ412914 211e12_ctg8 Subclones from BAC clone... 180 3e-043
gb|BZ412913.1|BZ412913 211e12_ctg3 Subclones from BAC clone... 176 4e-042
gb|BZ412912.1|BZ412912 211e12_12 Subclones from BAC clones ... 133 6e-029
gb|CW492959.1|CW492959 fsbb001f283i04k0 Sorghum methylation... 129 9e-028
gb|CD207726.1|CD207726 HS1_34_A04.g1_A012 Heat-shocked seed... 86 1e-014
gb|CW205856.1|CW205856 104_634_11187289_148_36956_009 Sorgh... 48 0.003
gb|CW408711.1|CW408711 fsbb001f102l13k0 Sorghum methylation... 48 0.003
gb|BI141313.1|BI141313 IP1_54_C03.g1_A002 Immature pannicle... 48 0.003
gb|CF772741.1|CF772741 DSBF1_38_G10.g1_A010 Drought-stresse... 48 0.003
gb|CW788666.1|CW788666 SP__Ba0047L23.r SP__Ba Sorghum propi... 42 0.16
>gb|BE357480.1|BE357480 DG1_20_C08.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 639
Score = 967 bits (488), Expect = 0.0
Identities = 599/636 (94%)
Strand = Plus / Minus
Query: 603 tcattgttcggattcccaacattgaagatgtggccattggctcgagcaggattttcaatc 662
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 639 tcattgtcaggattcccaacattgaagatgtgaccattggctcgagcaggattttcaatc 580
Query: 663 atcagcactacagcttcgatagcatccttgatgtagacaaaggttctctgagactgaccc 722
|| ||||| ||||||||||| |||||||| ||||| ||||| |||||||||||||| |||
Sbjct: 579 attagcacaacagcttcgatggcatccttaatgtaaacaaaagttctctgagactggccc 520
Query: 723 ccatcaacaagcttcaagggctctctccggagcagattgttactgaagcaagccaaaacc 782
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 519 ccatcaacaagcttcaagggctctcggcggagcagattgttactgaagcaagccaaaacc 460
Query: 783 cgaggcacaccctcgctaggaccatcgacaccaggaatgaaatccatccttggcccaatc 842
|| || |||||||| ||||||||||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 459 cggggtacaccctcactaggaccatcaacaccaggaatgaagtccattcttgggccaatc 400
Query: 843 caattaaaaggtctcacgattgtgaattcaaggccattttctgcaccttcagcaaataca 902
||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||||| |
Sbjct: 399 caattgaaaggtctcacaatcgtgaattcaaggccattttctgcgccttcagcaaatata 340
Query: 903 agcctctcaataagttgcttcgcgcaagcataggaccatctttgtttcacgattggacca 962
|||||||||||||||||||| ||||| ||||||||||||| ||||||||| |||||||||
Sbjct: 339 agcctctcaataagttgctttgcgcatgcataggaccatcgttgtttcacaattggacca 280
Query: 963 aaaatacagggcgactcatcttctttaagaacataaaattcaggttccttgcggagcggg 1022
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 279 aaaatacagggtgactcatcttctttcagaacataaaattcaggttccttgcggagcggg 220
Query: 1023 tggtctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtgg 1082
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 219 tggtctttggggaggaagctgccgatggtcttgccatagacctcgcaggtggagaagtgg 160
Query: 1083 atgagacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagttg 1142
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 159 atgagacgcttgctgttctcggagcagtatttgaccactgggagtgcgtcgatgaagttg 100
Query: 1143 ctgtagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccagg 1202
|||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 99 ctgtagatggtgtcgagggggcgcgtgttgtagtccgccggcgtgcagatggccgccagg 40
Query: 1203 ttgatggtcagatcggccatcttgatgagcccctcg 1238
||||||||||||||||||||||||||||| ||||||
Sbjct: 39 ttgatggtcagatcggccatcttgatgaggccctcg 4
>gb|CD205706.1|CD205706 HS1_15_C10.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_15_C10_A012 5', mRNA sequence
Length = 684
Score = 876 bits (442), Expect = 0.0
Identities = 517/542 (95%)
Strand = Plus / Minus
Query: 961 caaaaatacagggcgactcatcttctttaagaacataaaattcaggttccttgcggagcg 1020
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 684 caaaaatacagggtgactcatcttctttcagaacataaaattcaggttccttgcggagcg 625
Query: 1021 ggtggtctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagt 1080
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 624 ggtggtctttggggaggaagctgccgacggtcttgccatagacctcgcaggtggagaagt 565
Query: 1081 ggatgagacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagt 1140
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 564 ggatgagacgcttgctgttctcggagcagtatttgaccactgggagtgcgtcgatgaagt 505
Query: 1141 tgctgtagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgcca 1200
|||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 504 tgctgtagatggtgtcgagggggcgcgtgttgtagtccgccggcgtgcagatggccgcca 445
Query: 1201 ggttgatggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgatgt 1260
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 444 ggttgatggtcagatcggccatcttgatgaggccctcgagcctggagtcgttcttgatgt 385
Query: 1261 taaggcggtggaaggagatgcgccccgcgaggtgcggcggcgcggggtcgacgaggtggc 1320
| ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 384 tgaggcggtggaaagagatgcggccggcgaggtgcggcggcgcggggtcgacgaggtggc 325
Query: 1321 ggatcttatcgcagtatacgtcgacggcgaggacgacatggcgcgtctcggccatgagct 1380
||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 324 ggatcttgtcgcagtagacgtcgacggcgaggacgacgtggcgcgtctcggccatgagct 265
Query: 1381 tctcgcagaggtgggagccgatgaagccgccggcgccaatcatgcagatggtgaggggcg 1440
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctcgcagaggtgggacccgatgaagccgccggcgccaatcatgcagatggtgaggggcg 205
Query: 1441 cgacggagttgccgtccagatccaggggcgcggctgccgccgctggagagagagacgacg 1500
||| || ||||||||||||||||||| ||||||| |||||||| |||||| |||||||||
Sbjct: 204 cgatggggttgccgtccagatccaggcgcgcggccgccgccgccggagagggagacgacg 145
Query: 1501 ac 1502
||
Sbjct: 144 ac 143
Score = 46.1 bits (23), Expect = 0.010
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1597 gtcgggttaagaggcgatgtcggtggc 1623
||||||||| |||||||||||||||||
Sbjct: 30 gtcgggttacgaggcgatgtcggtggc 4
>gb|AW922690.1|AW922690 DG1_45_F09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 510
Score = 829 bits (418), Expect = 0.0
Identities = 484/506 (95%)
Strand = Plus / Minus
Query: 902 aagcctctcaataagttgcttcgcgcaagcataggaccatctttgtttcacgattggacc 961
||||||||||||||||||||| ||||| ||||||||||||| ||||||||| ||||||||
Sbjct: 506 aagcctctcaataagttgctttgcgcatgcataggaccatcgttgtttcacaattggacc 447
Query: 962 aaaaatacagggcgactcatcttctttaagaacataaaattcaggttccttgcggagcgg 1021
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 446 aaaaatacagggtgactcatcttctttcagaacataaaattcaggttccttgcggagcgg 387
Query: 1022 gtggtctttggggaggaagctgccgatggtcttgccatagacctcgcacgtggagaagtg 1081
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 386 gtggtctttggggaggaagctgccgatggtcttgccatagacctcgcaggtggagaagtg 327
Query: 1082 gatgagacgcttgctgttctcggagcagtacttgaccactgggagtgcatcgatgaagtt 1141
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 326 gatgagacgcttgctgttctcggagcagtatttgaccactgggagtgcgtcgatgaagtt 267
Query: 1142 gctgtagatggtgtcaagggggcgagtgttgtagtccgccggcgtgcagatagccgccag 1201
||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 266 gctgtagatggtgtcgagggggcgcgtgttgtagtccgccggcgtgcagatggccgccag 207
Query: 1202 gttgatggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttgatgtt 1261
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 206 gttgatggtcagatcggccatcttgatgaggccctcgagcctggagtcgttcttgatgtt 147
Query: 1262 aaggcggtggaaggagatgcgccccgcgaggtgcggcggcgcggggtcgacgaggtggcg 1321
||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 146 gaggcggtggaaagagatgcggccggcgaggtgcggcggcgcggggtcgacgaggtggcg 87
Query: 1322 gatcttatcgcagtatacgtcgacggcgaggacgacatggcgcgtctcggccatgagctt 1381
|||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 86 gatcttgtcgcagtagacgtcgacggcgaggacgacgtggcgcgtctcggccatgagctt 27
Query: 1382 ctcgcagaggtgggagccgatgaagc 1407
||||||||||||||| ||||||||||
Sbjct: 26 ctcgcagaggtgggacccgatgaagc 1
>gb|CX622737.1|CX622737 GABR1_65_E07.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_65_E07_A002 5', mRNA sequence
Length = 727
Score = 817 bits (412), Expect = 0.0
Identities = 478/500 (95%)
Strand = Plus / Minus
Query: 1003 caggttccttgcggagcgggtggtctttggggaggaagctgccgatggtcttgccataga 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 caggttccttgcggagcgggtggtctttggggaggaagctgccgatggtcttgccataga 668
Query: 1063 cctcgcacgtggagaagtggatgagacgcttgctgttctcggagcagtacttgaccactg 1122
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 667 cctcgcaggtggagaagtggatgagacgcttgctgttctcggagcagtatttgaccactg 608
Query: 1123 ggagtgcatcgatgaagttgctgtagatggtgtcaagggggcgagtgttgtagtccgccg 1182
||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 607 ggagtgcgtcgatgaagttgctgtagatggtgtcgagggggcgcgtgttgtagtccgccg 548
Query: 1183 gcgtgcagatagccgccaggttgatggtcagatcggccatcttgatgagcccctcgagcc 1242
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 547 gcgtgcagatggccgccaggttgatggtcagatcggccatcttgatgaggccctcgagcc 488
Query: 1243 tggagtcattcttgatgttaaggcggtggaaggagatgcgccccgcgaggtgcggcggcg 1302
||||||| ||||||||||| ||||||||||| |||||||| || ||||||||||||||||
Sbjct: 487 tggagtcgttcttgatgttgaggcggtggaaagagatgcggccggcgaggtgcggcggcg 428
Query: 1303 cggggtcgacgaggtggcggatcttatcgcagtatacgtcgacggcgaggacgacatggc 1362
||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct: 427 cggggtcgacgaggtggcggatcttgtcgcagtagacgtcgacggcgaggacgacgtggc 368
Query: 1363 gcgtctcggccatgagcttctcgcagaggtgggagccgatgaagccgccggcgccaatca 1422
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 367 gcgtctcggccatgagcttctcgcagaggtgggacccgatgaagccgccggcgccaatca 308
Query: 1423 tgcagatggtgaggggcgcgacggagttgccgtccagatccaggggcgcggctgccgccg 1482
||||||||||||||||||||| || ||||||||||||||||||| ||||||| |||||||
Sbjct: 307 tgcagatggtgaggggcgcgatggggttgccgtccagatccaggcgcgcggccgccgccg 248
Query: 1483 ctggagagagagacgacgac 1502
| |||||| |||||||||||
Sbjct: 247 ccggagagggagacgacgac 228
Score = 46.1 bits (23), Expect = 0.010
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1597 gtcgggttaagaggcgatgtcggtggc 1623
||||||||| |||||||||||||||||
Sbjct: 115 gtcgggttacgaggcgatgtcggtggc 89
>gb|BE125379.1|BE125379 DG1_20_C08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 445
Score = 700 bits (353), Expect = 0.0
Identities = 419/441 (95%)
Strand = Plus / Minus
Query: 798 ctaggaccatcgacaccaggaatgaaatccatccttggcccaatccaattaaaaggtctc 857
||||||||||| |||||||||||||| ||||| ||||| ||||||||||| |||||||||
Sbjct: 444 ctaggaccatcaacaccaggaatgaagtccattcttgggccaatccaattgaaaggtctc 385
Query: 858 acgattgtgaattcaaggccattttctgcaccttcagcaaatacaagcctctcaataagt 917
|| || ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 384 acaatcgtgaattcaaggccattttctgcgccttcagcaaatataagcctctcaataagt 325
Query: 918 tgcttcgcgcaagcataggaccatctttgtttcacgattggaccaaaaatacagggcgac 977
||||| ||||| ||||||||||||| ||||||||| |||||||||||||||||||| |||
Sbjct: 324 tgctttgcgcatgcataggaccatcgttgtttcacaattggaccaaaaatacagggtgac 265
Query: 978 tcatcttctttaagaacataaaattcaggttccttgcggagcgggtggtctttggggagg 1037
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcatcttctttcagaacataaaattcaggttccttgcggagcgggtggtctttggggagg 205
Query: 1038 aagctgccgatggtcttgccatagacctcgcacgtggagaagtggatgagacgcttgctg 1097
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 204 aagctgccgatggtcttgccatagacctcgcaggtggagaagtggatgagacgcttgctg 145
Query: 1098 ttctcggagcagtacttgaccactgggagtgcatcgatgaagttgctgtagatggtgtca 1157
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 144 ttctcggagcagtatttgaccactgggagtgcgtcgatgaagttgctgtagatggtgtcg 85
Query: 1158 agggggcgagtgttgtagtccgccggcgtgcagatagccgccaggttgatggtcagatcg 1217
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 84 agggggcgcgtgttgtagtccgccggcgtgcagatggccgccaggttgatggtcagatcg 25
Query: 1218 gccatcttgatgagcccctcg 1238
|||||||||||||| ||||||
Sbjct: 24 gccatcttgatgaggccctcg 4
>gb|BE361030.1|BE361030 DG1_69_A08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 591
Score = 700 bits (353), Expect = 0.0
Identities = 422/445 (94%)
Strand = Plus / Minus
Query: 1058 atagacctcgcacgtggagaagtggatgagacgcttgctgttctcggagcagtacttgac 1117
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 591 atagacttcgcaggtggagaagtggatgagacgcttgctgttctcggagcagtatttgac 532
Query: 1118 cactgggagtgcatcgatgaagttgctgtagatggtgtcaagggggcgagtgttgtagtc 1177
|||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 531 cactgggagtgcgtcgatgaagttgctgtagatggtgtcgagggggcgcgtgttgtagtc 472
Query: 1178 cgccggcgtgcagatagccgccaggttgatggtcagatcggccatcttgatgagcccctc 1237
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 471 cgccggcgtgcagatggccgccaggttgatggtcagatcggccatcttgatgaggccctc 412
Query: 1238 gagcctggagtcattcttgatgttaaggcggtggaaggagatgcgccccgcgaggtgcgg 1297
|||||||||||| ||||||||||| ||||||||||| |||||||| || |||||||||||
Sbjct: 411 gagcctggagtcgttcttgatgttgaggcggtggaaagagatgcggccggcgaggtgcgg 352
Query: 1298 cggcgcggggtcgacgaggtggcggatcttatcgcagtatacgtcgacggcgaggacgac 1357
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 351 cggcgcggggtcgacgaggtggcggatcttgtcgcagtagacgtcgacggcgaggacgac 292
Query: 1358 atggcgcgtctcggccatgagcttctcgcagaggtgggagccgatgaagccgccggcgcc 1417
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 291 gtggcgcgtctcggccatgagcttctcgcagaggtgggacccgatgaagccgccggcgcc 232
Query: 1418 aatcatgcagatggtgaggggcgcgacggagttgccgtccagatccaggggcgcggctgc 1477
|||||||||||||||||||||||||| || ||||||||||||||||||| ||||||| ||
Sbjct: 231 aatcatgcagatggtgaggggcgcgatggggttgccgtccagatccaggcgcgcggccgc 172
Query: 1478 cgccgctggagagagagacgacgac 1502
|||||| |||||| |||||||||||
Sbjct: 171 cgccgccggagagggagacgacgac 147
Score = 46.1 bits (23), Expect = 0.010
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1597 gtcgggttaagaggcgatgtcggtggc 1623
||||||||| |||||||||||||||||
Sbjct: 34 gtcgggttacgaggcgatgtcggtggc 8
>gb|CD205594.1|CD205594 HS1_15_C10.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_15_C10_A012 3', mRNA sequence
Length = 663
Score = 688 bits (347), Expect = 0.0
Identities = 449/483 (92%)
Strand = Plus / Minus
Query: 326 tgaagcctgcgacatttgccttttcacagcttctttgtatgtcttgtgctgatacgtcag 385
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 487 tgaagcctgcgacatttgcctcttcacagcttctttgtatgtcttgtgctgatatgtcaa 428
Query: 386 cgttgtctccagcagatccttgagaggcgtctttgggttccaacctagctgcttgttgat 445
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 427 cgttgtctccagcagatccttgagaggagtctttgggttccaacctagctgcttgttgat 368
Query: 446 tatagtcatgtcggggatcctcttgtcgctatcatcgtatccttcgccgtagaactgact 505
||||||||||||||| || ||||| || || ||||| |||||||| || |||||||||||
Sbjct: 367 tatagtcatgtcgggaattctcttatcactgtcatcatatccttcaccatagaactgact 308
Query: 506 cgagctcacgtcaatcatgggctcatccagcggtgcctctcctgagacatttgcgtagac 565
||| || || |||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 307 cgaacttacatcaatcatgggctcatccagtggtgcctctcctgagacgtttgcatagac 248
Query: 566 ctctgtcatcatttgggccaactccctaacggtaacttcattgttcggattcccaacatt 625
|||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||
Sbjct: 247 ctctgtcatcatttgggccaactccctaacagtaacctcattgtcaggattcccaacatt 188
Query: 626 gaagatgtggccattggctcgagcaggattttcaatcatcagcactacagcttcgatagc 685
||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct: 187 gaagatgtgaccattggctcgagcaggattttcaatcattagcacaacagcttcgatggc 128
Query: 686 atccttgatgtagacaaaggttctctgagactgacccccatcaacaagcttcaagggctc 745
|||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 127 atccttaatgtaaacaaaggttctctgagactggcccccatcaacaagcttcaagggctc 68
Query: 746 tctccggagcagattgttactgaagcaagccaaaacccgaggcacaccctcgctaggacc 805
|| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct: 67 tcggcggagcagattgttactgaagcaagccaaaacccggggtacaccctcactaggacc 8
Query: 806 atc 808
|||
Sbjct: 7 atc 5
Score = 46.1 bits (23), Expect = 0.010
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 255 cttccgaaacaacttaacagctgcgactagg 285
||||||||||| | |||||||||||||||||
Sbjct: 586 cttccgaaacatcataacagctgcgactagg 556
>gb|BE355651.1|BE355651 DG1_115_B10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 656
Score = 656 bits (331), Expect = 0.0
Identities = 433/467 (92%)
Strand = Plus / Minus
Query: 516 tcaatcatgggctcatccagcggtgcctctcctgagacatttgcgtagacctctgtcatc 575
|||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct: 467 tcaatcatgggctcatccagtggtgcctctcctgagacgtttgcatagacctctgtcatc 408
Query: 576 atttgggccaactccctaacggtaacttcattgttcggattcccaacattgaagatgtgg 635
|||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||
Sbjct: 407 atttgggccaactccctaacagtaacctcattgtcaggattcccaacattgaagatgtga 348
Query: 636 ccattggctcgagcaggattttcaatcatcagcactacagcttcgatagcatccttgatg 695
||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||
Sbjct: 347 ccattggctcgagcaggattttcaatcattagcacaacagcttcgatggcatccttaatg 288
Query: 696 tagacaaaggttctctgagactgacccccatcaacaagcttcaagggctctctccggagc 755
|| ||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 287 taaacaaaagttctctgagactggcccccatcaacaagcttcaagggctctcggcggagc 228
Query: 756 agattgttactgaagcaagccaaaacccgaggcacaccctcgctaggaccatcgacacca 815
||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||
Sbjct: 227 agattgttactgaagcaagccaaaacccggggtacaccctcactaggaccatcaacacca 168
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcacgattgtgaattcaagg 875
|||||||| ||||| ||||| ||||||||||| ||||||||||| || ||||||||||||
Sbjct: 167 ggaatgaagtccattcttgggccaatccaattgaaaggtctcacaatcgtgaattcaagg 108
Query: 876 ccattttctgcaccttcagcaaatacaagcctctcaataagttgcttcgcgcaagcatag 935
||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct: 107 ccattttctgcgccttcagcaaatataagcctctcaataagttgctttgcgcatgcatag 48
Query: 936 gaccatctttgtttcacgattggaccaaaaatacagggcgactcatc 982
||||||| ||||||||| |||||||||||||||||||| ||||||||
Sbjct: 47 gaccatcgttgtttcacaattggaccaaaaatacagggtgactcatc 1
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 192 atctaacaacacggacatctagggcctc 219
||||||||||| ||||||||||||||||
Sbjct: 569 atctaacaacatggacatctagggcctc 542
Score = 46.1 bits (23), Expect = 0.010
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 255 cttccgaaacaacttaacagctgcgactagg 285
||||||||||| | |||||||||||||||||
Sbjct: 511 cttccgaaacatcataacagctgcgactagg 481
>gb|BE355578.1|BE355578 DG1_115_A10.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 553
Score = 617 bits (311), Expect = e-174
Identities = 374/395 (94%)
Strand = Plus / Minus
Query: 1108 agtacttgaccactgggagtgcatcgatgaagttgctgtagatggtgtcaagggggcgag 1167
|||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct: 553 agtatttgaccactgggagtgcgtcgatgaagttgctgtagatggtgtcgagggggcgcg 494
Query: 1168 tgttgtagtccgccggcgtgcagatagccgccaggttgatggtcagatcggccatcttga 1227
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 493 tgttgtagtccgccggcgtgcagatggccgccaggttgatggtcagatcggccatcttga 434
Query: 1228 tgagcccctcgagcctggagtcattcttgatgttaaggcggtggaaggagatgcgccccg 1287
|||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||| || |
Sbjct: 433 tgaggccctcgagcctggagtcgttcttgatgttgaggcggtggaaagagatgcggccgg 374
Query: 1288 cgaggtgcggcggcgcggggtcgacgaggtggcggatcttatcgcagtatacgtcgacgg 1347
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 373 cgaggtgcggcggcgcggggtcgacgaggtggcggatcttgtcgcagtagacgtcgacgg 314
Query: 1348 cgaggacgacatggcgcgtctcggccatgagcttctcgcagaggtgggagccgatgaagc 1407
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 313 cgaggacgacgtggcgcgtctcggccatgagcttctcgcagaggtgggacccgatgaagc 254
Query: 1408 cgccggcgccaatcatgcagatggtgaggggcgcgacggagttgccgtccagatccaggg 1467
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 253 cgccggcgccaatcatgcagatggtgaggggcgcgatggggttgccgtccagatccaggc 194
Query: 1468 gcgcggctgccgccgctggagagagagacgacgac 1502
||||||| |||||||| |||||| |||||||||||
Sbjct: 193 gcgcggccgccgccgccggagagggagacgacgac 159
Score = 46.1 bits (23), Expect = 0.010
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1597 gtcgggttaagaggcgatgtcggtggc 1623
||||||||| |||||||||||||||||
Sbjct: 46 gtcgggttacgaggcgatgtcggtggc 20
>gb|BE355588.1|BE355588 DG1_115_B10.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 552
Score = 615 bits (310), Expect = e-174
Identities = 370/390 (94%)
Strand = Plus / Minus
Query: 1113 ttgaccactgggagtgcatcgatgaagttgctgtagatggtgtcaagggggcgagtgttg 1172
||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 548 ttgaccactgggagtgcgtcgatgaagttgctgtagatggtgtcgagggggcgcgtgttg 489
Query: 1173 tagtccgccggcgtgcagatagccgccaggttgatggtcagatcggccatcttgatgagc 1232
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tagtccgccggcgtgcagatggccgccaggttgatggtcagatcggccatcttgatgagg 429
Query: 1233 ccctcgagcctggagtcattcttgatgttaaggcggtggaaggagatgcgccccgcgagg 1292
||||||||||||||||| ||||||||||| ||||||||||| |||||||| || ||||||
Sbjct: 428 ccctcgagcctggagtcgttcttgatgttgaggcggtggaaagagatgcggccggcgagg 369
Query: 1293 tgcggcggcgcggggtcgacgaggtggcggatcttatcgcagtatacgtcgacggcgagg 1352
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 368 tgcggcggcgcggggtcgacgaggtggcggatcttgtcgcagtagacgtcgacggcgagg 309
Query: 1353 acgacatggcgcgtctcggccatgagcttctcgcagaggtgggagccgatgaagccgccg 1412
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 308 acgacgtggcgcgtctcggccatgagcttctcgcagaggtgggacccgatgaagccgccg 249
Query: 1413 gcgccaatcatgcagatggtgaggggcgcgacggagttgccgtccagatccaggggcgcg 1472
||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct: 248 gcgccaatcatgcagatggtgaggggcgcgatggggttgccgtccagatccaggcgcgcg 189
Query: 1473 gctgccgccgctggagagagagacgacgac 1502
|| |||||||| |||||| |||||||||||
Sbjct: 188 gccgccgccgccggagagggagacgacgac 159
Score = 46.1 bits (23), Expect = 0.010
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1597 gtcgggttaagaggcgatgtcggtggc 1623
||||||||| |||||||||||||||||
Sbjct: 46 gtcgggttacgaggcgatgtcggtggc 20
>gb|BG462772.1|BG462772 EM1_45_D05.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 534
Score = 613 bits (309), Expect = e-173
Identities = 369/389 (94%)
Strand = Plus / Minus
Query: 1114 tgaccactgggagtgcatcgatgaagttgctgtagatggtgtcaagggggcgagtgttgt 1173
|||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 534 tgaccactgggagtgcgtcgatgaagttgctgtagatggtgtcgagggggcgcgtgttgt 475
Query: 1174 agtccgccggcgtgcagatagccgccaggttgatggtcagatcggccatcttgatgagcc 1233
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 474 agtccgccggcgtgcagatggccgccaggttgatggtcagatcggccatcttgatgaggc 415
Query: 1234 cctcgagcctggagtcattcttgatgttaaggcggtggaaggagatgcgccccgcgaggt 1293
|||||||||||||||| ||||||||||| ||||||||||| |||||||| || |||||||
Sbjct: 414 cctcgagcctggagtcgttcttgatgttgaggcggtggaaagagatgcggccggcgaggt 355
Query: 1294 gcggcggcgcggggtcgacgaggtggcggatcttatcgcagtatacgtcgacggcgagga 1353
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 354 gcggcggcgcggggtcgacgaggtggcggatcttgtcgcagtagacgtcgacggcgagga 295
Query: 1354 cgacatggcgcgtctcggccatgagcttctcgcagaggtgggagccgatgaagccgccgg 1413
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 294 cgacgtggcgcgtctcggccatgagcttctcgcagaggtgggacccgatgaagccgccgg 235
Query: 1414 cgccaatcatgcagatggtgaggggcgcgacggagttgccgtccagatccaggggcgcgg 1473
|||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct: 234 cgccaatcatgcagatggtgaggggcgcgatggggttgccgtccagatccaggcgcgcgg 175
Query: 1474 ctgccgccgctggagagagagacgacgac 1502
| |||||||| |||||| |||||||||||
Sbjct: 174 ccgccgccgccggagagggagacgacgac 146
Score = 42.1 bits (21), Expect = 0.16
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1597 gtcgggttaagaggcgatgtcggtg 1621
||||||||| |||||||||||||||
Sbjct: 33 gtcgggttacgaggcgatgtcggtg 9
>gb|BG560112.1|BG560112 RHIZ2_69_E05.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 539
Score = 603 bits (304), Expect = e-170
Identities = 361/380 (95%)
Strand = Plus / Minus
Query: 1123 ggagtgcatcgatgaagttgctgtagatggtgtcaagggggcgagtgttgtagtccgccg 1182
||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 539 ggagtgcgtcgatgaagttgctgtagatggtgtcgagggggcgcgtgttgtagtccgccg 480
Query: 1183 gcgtgcagatagccgccaggttgatggtcagatcggccatcttgatgagcccctcgagcc 1242
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 479 gcgtgcagatggccgccaggttgatggtcagatcggccatcttgatgaggccctcgagcc 420
Query: 1243 tggagtcattcttgatgttaaggcggtggaaggagatgcgccccgcgaggtgcggcggcg 1302
||||||| ||||||||||| ||||||||||| |||||||| || ||||||||||||||||
Sbjct: 419 tggagtcgttcttgatgttgaggcggtggaaagagatgcggccggcgaggtgcggcggcg 360
Query: 1303 cggggtcgacgaggtggcggatcttatcgcagtatacgtcgacggcgaggacgacatggc 1362
||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct: 359 cggggtcgacgaggtggcggatcttgtcgcagtagacgtcgacggcgaggacgacgtggc 300
Query: 1363 gcgtctcggccatgagcttctcgcagaggtgggagccgatgaagccgccggcgccaatca 1422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gcgtctcggccatgagcttctcgcagaggtgggagccgatgaagccgccggcgccaatca 240
Query: 1423 tgcagatggtgaggggcgcgacggagttgccgtccagatccaggggcgcggctgccgccg 1482
||||||||||||||||||||| || ||||||||||||||||||| ||||||| |||||||
Sbjct: 239 tgcagatggtgaggggcgcgatggggttgccgtccagatccaggcgcgcggccgccgccg 180
Query: 1483 ctggagagagagacgacgac 1502
| |||||| |||||||||||
Sbjct: 179 ccggagagggagacgacgac 160
Score = 46.1 bits (23), Expect = 0.010
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1597 gtcgggttaagaggcgatgtcggtggc 1623
||||||||| |||||||||||||||||
Sbjct: 46 gtcgggttacgaggcgatgtcggtggc 20
>gb|BE125565.1|BE125565 DG1_28_C08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 358
Score = 585 bits (295), Expect = e-165
Identities = 337/351 (96%)
Strand = Plus / Minus
Query: 888 ccttcagcaaatacaagcctctcaataagttgcttcgcgcaagcataggaccatctttgt 947
||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| ||||
Sbjct: 354 ccttcagcaaatataagcctctcaataagttgctttgcgcatgcataggaccatcgttgt 295
Query: 948 ttcacgattggaccaaaaatacagggcgactcatcttctttaagaacataaaattcaggt 1007
||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 294 ttcacaattggaccaaaaatacagggtgactcatcttctttcagaacataaaattcaggt 235
Query: 1008 tccttgcggagcgggtggtctttggggaggaagctgccgatggtcttgccatagacctcg 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 tccttgcggagcgggtggtctttggggaggaagctgccgatggtcttgccatagacctcg 175
Query: 1068 cacgtggagaagtggatgagacgcttgctgttctcggagcagtacttgaccactgggagt 1127
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 174 caggtggagaagtggatgagacgcttgctgttctcggagcagtatttgaccactgggagt 115
Query: 1128 gcatcgatgaagttgctgtagatggtgtcaagggggcgagtgttgtagtccgccggcgtg 1187
|| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 114 gcgtcgatgaagttgctgtagatggtgtcgagggggcgcgtgttgtagtccgccggcgtg 55
Query: 1188 cagatagccgccaggttgatggtcagatcggccatcttgatgagcccctcg 1238
||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 54 cagatggccgccaggttgatggtcagatcggccatcttgatgaggccctcg 4
>gb|BE355648.1|BE355648 DG1_115_A10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 432
Score = 585 bits (295), Expect = e-165
Identities = 388/419 (92%)
Strand = Plus / Minus
Query: 516 tcaatcatgggctcatccagcggtgcctctcctgagacatttgcgtagacctctgtcatc 575
|||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct: 419 tcaatcatgggctcatccagtggtgcctctcctgagacgtttgcatagacctctgtcatc 360
Query: 576 atttgggccaactccctaacggtaacttcattgttcggattcccaacattgaagatgtgg 635
|||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||
Sbjct: 359 atttgggccaactccctaacagtaacctcattgtcaggattcccaacattgaagatgtga 300
Query: 636 ccattggctcgagcaggattttcaatcatcagcactacagcttcgatagcatccttgatg 695
||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||
Sbjct: 299 ccattggctcgagcaggattttcaatcattagcacaacagcttcgatggcatccttaatg 240
Query: 696 tagacaaaggttctctgagactgacccccatcaacaagcttcaagggctctctccggagc 755
|| ||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 239 taaacaaaagttctctgagactggcccccatcaacaagcttcaagggctctcggcggagc 180
Query: 756 agattgttactgaagcaagccaaaacccgaggcacaccctcgctaggaccatcgacacca 815
||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||
Sbjct: 179 agattgttactgaagcaagccaaaacccggggtacaccctcactaggaccatcaacacca 120
Query: 816 ggaatgaaatccatccttggcccaatccaattaaaaggtctcacgattgtgaattcaagg 875
|||||||| ||||| ||||| ||||||||||| ||||||||||| || ||||||||||||
Sbjct: 119 ggaatgaagtccattcttgggccaatccaattgaaaggtctcacaatcgtgaattcaagg 60
Query: 876 ccattttctgcaccttcagcaaatacaagcctctcaataagttgcttcgcgcaagcata 934
||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 59 ccattttctgcgccttcagcaaatataagcctctcaataagttgctttgcgcatgcata 1
>gb|AW922573.1|AW922573 DG1_45_F09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 733
Score = 537 bits (271), Expect = e-150
Identities = 358/387 (92%)
Strand = Plus / Minus
Query: 326 tgaagcctgcgacatttgccttttcacagcttctttgtatgtcttgtgctgatacgtcag 385
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 387 tgaagcctgcgacatttgcctcttcacagcttctttgtatgtcttgtgctgatatgtcaa 328
Query: 386 cgttgtctccagcagatccttgagaggcgtctttgggttccaacctagctgcttgttgat 445
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 327 cgttgtctccagcagatccttgagaggagtctttgggttccaacctagctgcttgttgat 268
Query: 446 tatagtcatgtcggggatcctcttgtcgctatcatcgtatccttcgccgtagaactgact 505
||||||||||||||| || ||||| || || ||||| |||||||| || |||||||||||
Sbjct: 267 tatagtcatgtcgggaattctcttatcactgtcatcatatccttcaccatagaactgact 208
Query: 506 cgagctcacgtcaatcatgggctcatccagcggtgcctctcctgagacatttgcgtagac 565
||| || || |||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 207 cgaacttacatcaatcatgggctcatccagtggtgcctctcctgagacgtttgcatagac 148
Query: 566 ctctgtcatcatttgggccaactccctaacggtaacttcattgttcggattcccaacatt 625
|||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||
Sbjct: 147 ctctgtcatcatttgggccaactccctaacagtaacctcattgtcaggattcccaacatt 88
Query: 626 gaagatgtggccattggctcgagcaggattttcaatcatcagcactacagcttcgatagc 685
||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct: 87 gaagatgtgaccattggctcgagcaggattttcaatcattagcacaacagcttcgatggc 28
Query: 686 atccttgatgtagacaaaggttctctg 712
|||||| ||||| ||||| ||||||||
Sbjct: 27 atccttaatgtaaacaaaagttctctg 1
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 192 atctaacaacacggacatctagggcctc 219
||||||||||| ||||||||||||||||
Sbjct: 544 atctaacaacatggacatctagggcctc 517
Score = 46.1 bits (23), Expect = 0.010
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 255 cttccgaaacaacttaacagctgcgactagg 285
||||||||||| | |||||||||||||||||
Sbjct: 486 cttccgaaacatcataacagctgcgactagg 456
>gb|BG462847.1|BG462847 EM1_45_D05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 643
Score = 502 bits (253), Expect = e-140
Identities = 331/357 (92%)
Strand = Plus / Minus
Query: 326 tgaagcctgcgacatttgccttttcacagcttctttgtatgtcttgtgctgatacgtcag 385
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 361 tgaagcctgcgacatttgcctcttcacagcttctttgtatgtcttgtgctgatatgtcaa 302
Query: 386 cgttgtctccagcagatccttgagaggcgtctttgggttccaacctagctgcttgttgat 445
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 301 cgttgtctccagcagatccttgagaggagtctttgggttccaacctagctgcttgttgat 242
Query: 446 tatagtcatgtcggggatcctcttgtcgctatcatcgtatccttcgccgtagaactgact 505
||||||||||||||| || ||||| || || ||||| |||||||| || |||||||||||
Sbjct: 241 tatagtcatgtcgggaattctcttatcactgtcatcatatccttcaccatagaactgact 182
Query: 506 cgagctcacgtcaatcatgggctcatccagcggtgcctctcctgagacatttgcgtagac 565
||| || || |||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 181 cgaacttacatcaatcatgggctcatccagtggtgcctctcctgagacgtttgcatagac 122
Query: 566 ctctgtcatcatttgggccaactccctaacggtaacttcattgttcggattcccaacatt 625
|||||||| ||||||||||||||||||||| ||||| ||||||| ||||||||||||||
Sbjct: 121 ctctgtcagcatttgggccaactccctaacagtaacctcattgtcaggattcccaacatt 62
Query: 626 gaagatgtggccattggctcgagcaggattttcaatcatcagcactacagcttcgat 682
||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 61 gaagatgtgaccattggctcgagcaggattttcaatcattagcacaacagcttcgat 5
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 192 atctaacaacacggacatctagggcctc 219
||||||||||| ||||||||||||||||
Sbjct: 518 atctaacaacatggacatctagggcctc 491
Score = 46.1 bits (23), Expect = 0.010
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 255 cttccgaaacaacttaacagctgcgactagg 285
||||||||||| | |||||||||||||||||
Sbjct: 460 cttccgaaacatcataacagctgcgactagg 430
>gb|BF704800.1|BF704800 FM1_51_F11.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 505
Score = 486 bits (245), Expect = e-135
Identities = 290/305 (95%)
Strand = Plus / Minus
Query: 1198 ccaggttgatggtcagatcggccatcttgatgagcccctcgagcctggagtcattcttga 1257
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 505 ccaggttgatggtcagatcggccatcttgatgaggccctcgagcctggagtcgttcttga 446
Query: 1258 tgttaaggcggtggaaggagatgcgccccgcgaggtgcggcggcgcggggtcgacgaggt 1317
|||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct: 445 tgttgaggcggtggaaagagatgcggccggcgaggtgcggcggcgcggggtcgacgaggt 386
Query: 1318 ggcggatcttatcgcagtatacgtcgacggcgaggacgacatggcgcgtctcggccatga 1377
|||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 ggcggatcttgtcgcagtagacgtcgacggcgaggacgacgtggcgcgtctcggccatga 326
Query: 1378 gcttctcgcagaggtgggagccgatgaagccgccggcgccaatcatgcagatggtgaggg 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcttctcgcagaggtgggagccgatgaagccgccggcgccaatcatgcagatggtgaggg 266
Query: 1438 gcgcgacggagttgccgtccagatccaggggcgcggctgccgccgctggagagagagacg 1497
|||||| || ||||||||||||||||||| ||||||| |||||||| |||||| ||||||
Sbjct: 265 gcgcgatggggttgccgtccagatccaggcgcgcggccgccgccgccggagagggagacg 206
Query: 1498 acgac 1502
|||||
Sbjct: 205 acgac 201
Score = 46.1 bits (23), Expect = 0.010
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1597 gtcgggttaagaggcgatgtcggtggc 1623
||||||||| |||||||||||||||||
Sbjct: 87 gtcgggttacgaggcgatgtcggtggc 61
>gb|CW167518.1|CW167518 104_576_11153646_148_36488_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153646, DNA
sequence
Length = 721
Score = 452 bits (228), Expect = e-125
Identities = 276/292 (94%)
Strand = Plus / Minus
Query: 1211 cagatcggccatcttgatgagcccctcgagcctggagtcattcttgatgttaaggcggtg 1270
||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct: 491 cagatcggccatcttgatgaggccctcgagcctggagtcgttcttgatgttgaggcggtg 432
Query: 1271 gaaggagatgcgccccgcgaggtgcggcggcgcggggtcgacgaggtggcggatcttatc 1330
||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 431 gaaagagatgcggccggcgaggtgcggcggcgcggggtcgacgaggtggcggatcttgtc 372
Query: 1331 gcagtatacgtcgacggcgaggacgacatggcgcgtctcggccatgagcttctcgcagag 1390
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 371 gcagtagacgtcgacggcgaggacgacgtggcgcgtctcggccatgagcttctcgcagag 312
Query: 1391 gtgggagccgatgaagccgccggcgccaatcatgcagatggtgaggggcgcgacggagtt 1450
|||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 311 gtgggacccgatgaagccgccggcgccaatcatgcagatggtgaggggcgcgatggggtt 252
Query: 1451 gccgtccagatccaggggcgcggctgccgccgctggagagagagacgacgac 1502
|||||||||||||||| ||||||| |||||||| |||||| |||||||||||
Sbjct: 251 gccgtccagatccaggcgcgcggccgccgccgccggagagggagacgacgac 200
Score = 58.0 bits (29), Expect = 3e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 1179 gccggcgtgcagatagccgccaggttgatggtc 1211
|||||||||||||| ||||||||||||||||||
Sbjct: 721 gccggcgtgcagatggccgccaggttgatggtc 689
Score = 46.1 bits (23), Expect = 0.010
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1597 gtcgggttaagaggcgatgtcggtggc 1623
||||||||| |||||||||||||||||
Sbjct: 87 gtcgggttacgaggcgatgtcggtggc 61
>gb|CX622653.1|CX622653 GABR1_65_E07.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_65_E07_A002 3', mRNA sequence
Length = 674
Score = 418 bits (211), Expect = e-115
Identities = 292/319 (91%)
Strand = Plus / Minus
Query: 326 tgaagcctgcgacatttgccttttcacagcttctttgtatgtcttgtgctgatacgtcag 385
||||||||||||||||||||| |||||||||||||||||||||||| ||||| | ||||
Sbjct: 319 tgaagcctgcgacatttgcctcttcacagcttctttgtatgtcttgggctgaaatgtcaa 260
Query: 386 cgttgtctccagcagatccttgagaggcgtctttgggttccaacctagctgcttgttgat 445
|||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 259 cgttgtctccagcaaatccttgagaggagtctttgggttccaacctaactgcttgttgat 200
Query: 446 tatagtcatgtcggggatcctcttgtcgctatcatcgtatccttcgccgtagaactgact 505
||||||||||||||| || ||||| || || ||||| |||||||| || |||||||||||
Sbjct: 199 tatagtcatgtcgggaattctcttatcactgtcatcatatccttcaccatagaactgact 140
Query: 506 cgagctcacgtcaatcatgggctcatccagcggtgcctctcctgagacatttgcgtagac 565
||| || || |||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 139 cgaacttacatcaatcatgggctcatccagtggtgcctctcctgagacgtttgcatagac 80
Query: 566 ctctgtcatcatttgggccaactccctaacggtaacttcattgttcggattcccaacatt 625
|||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||
Sbjct: 79 ctctgtcatcatttgggccaactccctaacagtaacctcattgtcaggattcccaacatt 20
Query: 626 gaagatgtggccattggct 644
||||||||| |||||||||
Sbjct: 19 gaagatgtgaccattggct 1
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 192 atctaacaacacggacatctagggcctc 219
||||||||||| ||||||||||||||||
Sbjct: 476 atctaacaacatggacatctagggcctc 449
Score = 46.1 bits (23), Expect = 0.010
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 255 cttccgaaacaacttaacagctgcgactagg 285
||||||||||| | |||||||||||||||||
Sbjct: 418 cttccgaaacatcataacagctgcgactagg 388
>gb|BF656569.1|BF656569 FM1_51_F11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 578
Score = 410 bits (207), Expect = e-112
Identities = 276/299 (92%)
Strand = Plus / Minus
Query: 326 tgaagcctgcgacatttgccttttcacagcttctttgtatgtcttgtgctgatacgtcag 385
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 299 tgaagcctgcgacatttgcctcttcacagcttctttgtatgtcttgtgctgatatgtcaa 240
Query: 386 cgttgtctccagcagatccttgagaggcgtctttgggttccaacctagctgcttgttgat 445
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 239 cgttgtctccagcagatccttgagaggagtctttgggttccaacctagctgcttgttgat 180
Query: 446 tatagtcatgtcggggatcctcttgtcgctatcatcgtatccttcgccgtagaactgact 505
||||||||||||||| || ||||| || || ||||| |||||||| || |||||||||||
Sbjct: 179 tatagtcatgtcgggaattctcttatcactgtcatcatatccttcaccatagaactgact 120
Query: 506 cgagctcacgtcaatcatgggctcatccagcggtgcctctcctgagacatttgcgtagac 565
||| || || |||||||| ||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 119 cgaacttacatcaatcataggctcatccagtggtgcctctcctgagacgtttgcatagac 60
Query: 566 ctctgtcatcatttgggccaactccctaacggtaacttcattgttcggattcccaacat 624
|||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||
Sbjct: 59 ctctgtcatcatttgggccaactccctaacagtaacctcattgtcaggattcccaacat 1
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 192 atctaacaacacggacatctagggcctc 219
||||||||||| ||||||||||||||||
Sbjct: 456 atctaacaacatggacatctagggcctc 429
Score = 46.1 bits (23), Expect = 0.010
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 255 cttccgaaacaacttaacagctgcgactagg 285
||||||||||| | |||||||||||||||||
Sbjct: 398 cttccgaaacatcataacagctgcgactagg 368
>gb|AW922542.1|AW922542 DG1_20_C08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 538
Score = 396 bits (200), Expect = e-108
Identities = 257/276 (93%)
Strand = Plus / Minus
Query: 326 tgaagcctgcgacatttgccttttcacagcttctttgtatgtcttgtgctgatacgtcag 385
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 280 tgaagcctgcgacatttgcctcttcacagcttctttgtatgtcttgtgctgatatgtcaa 221
Query: 386 cgttgtctccagcagatccttgagaggcgtctttgggttccaacctagctgcttgttgat 445
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 220 cgttgtctccagcagatccttgagaggagtctttgggttccaacctagctgcttgttgat 161
Query: 446 tatagtcatgtcggggatcctcttgtcgctatcatcgtatccttcgccgtagaactgact 505
||||||||||||||| || ||||| || || ||||| |||||||| || |||||||||||
Sbjct: 160 tatagtcatgtcgggaattctcttatcactgtcatcatatccttcaccatagaactgact 101
Query: 506 cgagctcacgtcaatcatgggctcatccagcggtgcctctcctgagacatttgcgtagac 565
||| || || |||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 100 cgaacttacatcaatcatgggctcatccagtggtgcctctcctgagacgtttgcatagac 41
Query: 566 ctctgtcatcatttgggccaactccctaacggtaac 601
|||||||||||||||||||||||||||||| |||||
Sbjct: 40 ctctgtcatcatttgggccaactccctaacagtaac 5
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 192 atctaacaacacggacatctagggcctc 219
||||||||||| ||||||||||||||||
Sbjct: 437 atctaacaacatggacatctagggcctc 410
Score = 46.1 bits (23), Expect = 0.010
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 255 cttccgaaacaacttaacagctgcgactagg 285
||||||||||| | |||||||||||||||||
Sbjct: 379 cttccgaaacatcataacagctgcgactagg 349
>gb|BG932924.1|BG932924 DG1_69_A08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 509
Score = 325 bits (164), Expect = 7e-087
Identities = 212/228 (92%)
Strand = Plus / Minus
Query: 326 tgaagcctgcgacatttgccttttcacagcttctttgtatgtcttgtgctgatacgtcag 385
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 231 tgaagcctgcgacatttgcctcttcacagcttctttgtatgtcttgtgctgatatgtcaa 172
Query: 386 cgttgtctccagcagatccttgagaggcgtctttgggttccaacctagctgcttgttgat 445
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 171 cgttgtctccagcagatccttgagaggagtctttgggttccaacctagctgcttgttgat 112
Query: 446 tatagtcatgtcggggatcctcttgtcgctatcatcgtatccttcgccgtagaactgact 505
||||||||||||||| || ||||| || || ||||| |||||||| || |||||||||||
Sbjct: 111 tatagtcatgtcgggaattctcttatcactgtcatcatatccttcaccatagaactgact 52
Query: 506 cgagctcacgtcaatcatgggctcatccagcggtgcctctcctgagac 553
||| || || |||||||||||||||||||| |||||||||||||||||
Sbjct: 51 cgaacttacatcaatcatgggctcatccagtggtgcctctcctgagac 4
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 192 atctaacaacacggacatctagggcctc 219
||||||||||| ||||||||||||||||
Sbjct: 388 atctaacaacatggacatctagggcctc 361
Score = 46.1 bits (23), Expect = 0.010
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 255 cttccgaaacaacttaacagctgcgactagg 285
||||||||||| | |||||||||||||||||
Sbjct: 330 cttccgaaacatcataacagctgcgactagg 300
>gb|BI141578.1|BI141578 IP1_54_C03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 318
Score = 264 bits (133), Expect = 2e-068
Identities = 157/165 (95%)
Strand = Plus / Minus
Query: 1338 acgtcgacggcgaggacgacatggcgcgtctcggccatgagcttctcgcagaggtgggag 1397
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 318 acgtcgacggcgaggacgacgtggcgcgtctcggccatgagcttctcgcagaggtgggac 259
Query: 1398 ccgatgaagccgccggcgccaatcatgcagatggtgaggggcgcgacggagttgccgtcc 1457
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 258 ccgatgaagccgccggcgccaatcatgcagatggtgaggggcgcgatggggttgccgtcc 199
Query: 1458 agatccaggggcgcggctgccgccgctggagagagagacgacgac 1502
||||||||| ||||||| |||||||| |||||| |||||||||||
Sbjct: 198 agatccaggcgcgcggccgccgccgccggagagggagacgacgac 154
Score = 46.1 bits (23), Expect = 0.010
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1597 gtcgggttaagaggcgatgtcggtggc 1623
||||||||| |||||||||||||||||
Sbjct: 41 gtcgggttacgaggcgatgtcggtggc 15
>gb|CW167517.1|CW167517 104_576_11153646_116_36487_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153646, DNA
sequence
Length = 703
Score = 202 bits (102), Expect = 7e-050
Identities = 108/110 (98%)
Strand = Plus / Plus
Query: 1009 ccttgcggagcgggtggtctttggggaggaagctgccgatggtcttgccatagacctcgc 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ccttgcggagcgggtggtctttggggaggaagctgccgatggtcttgccatagacctcgc 317
Query: 1069 acgtggagaagtggatgagacgcttgctgttctcggagcagtacttgacc 1118
| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 318 aggtggagaagtggatgagacgcttgctgttctcggagcagtatttgacc 367
Score = 161 bits (81), Expect = 3e-037
Identities = 93/97 (95%)
Strand = Plus / Plus
Query: 1115 gaccactgggagtgcatcgatgaagttgctgtagatggtgtcaagggggcgagtgttgta 1174
||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 477 gaccactgggagtgcgtcgatgaagttgctgtagatggtgtcgagggggcgcgtgttgta 536
Query: 1175 gtccgccggcgtgcagatagccgccaggttgatggtc 1211
|||||||||||||||||| ||||||||||||||||||
Sbjct: 537 gtccgccggcgtgcagatggccgccaggttgatggtc 573
>gb|BZ412914.1|BZ412914 211e12_ctg8 Subclones from BAC clones mapped to Sorghum bicolor
chromosome 3 Sorghum bicolor genomic clone 211e12, DNA
sequence
Length = 846
Score = 180 bits (91), Expect = 3e-043
Identities = 103/107 (96%)
Strand = Plus / Minus
Query: 326 tgaagcctgcgacatttgccttttcacagcttctttgtatgtcttgtgctgatacgtcag 385
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 225 tgaagcctgcgacatttgcctcttcacagcttctttgtatgtcttgtgctgatatgtcaa 166
Query: 386 cgttgtctccagcagatccttgagaggcgtctttgggttccaaccta 432
||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 165 cgttgtctccagcagatccttgagaggagtctttgggttccaaccta 119
Score = 63.9 bits (32), Expect = 4e-008
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 428 acctagctgcttgttgattatagtcatgtcgg 459
||||||||||||||||||||||||||||||||
Sbjct: 32 acctagctgcttgttgattatagtcatgtcgg 1
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 192 atctaacaacacggacatctagggcctc 219
||||||||||| ||||||||||||||||
Sbjct: 382 atctaacaacatggacatctagggcctc 355
Score = 46.1 bits (23), Expect = 0.010
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 255 cttccgaaacaacttaacagctgcgactagg 285
||||||||||| | |||||||||||||||||
Sbjct: 324 cttccgaaacatcataacagctgcgactagg 294
>gb|BZ412913.1|BZ412913 211e12_ctg3 Subclones from BAC clones mapped to Sorghum bicolor
chromosome 3 Sorghum bicolor genomic clone 211e12, DNA
sequence
Length = 839
Score = 176 bits (89), Expect = 4e-042
Identities = 110/117 (94%)
Strand = Plus / Plus
Query: 895 caaatacaagcctctcaataagttgcttcgcgcaagcataggaccatctttgtttcacga 954
|||||| ||||||||||||||||||||| ||||| ||||||||||||| ||||||||| |
Sbjct: 125 caaatataagcctctcaataagttgctttgcgcatgcataggaccatcgttgtttcacaa 184
Query: 955 ttggaccaaaaatacagggcgactcatcttctttaagaacataaaattcaggttcct 1011
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 185 ttggaccaaaaatacagggtgactcatcttctttcagaacataaaattcaggttcct 241
>gb|BZ412912.1|BZ412912 211e12_12 Subclones from BAC clones mapped to Sorghum bicolor
chromosome 3 Sorghum bicolor genomic clone 211e12, DNA
sequence
Length = 404
Score = 133 bits (67), Expect = 6e-029
Identities = 94/103 (91%)
Strand = Plus / Minus
Query: 658 caatcatcagcactacagcttcgatagcatccttgatgtagacaaaggttctctgagact 717
||||||| ||||| ||||||||||| |||||||| ||||| ||||| |||||||||||||
Sbjct: 301 caatcattagcacaacagcttcgatggcatccttaatgtaaacaaaagttctctgagact 242
Query: 718 gacccccatcaacaagcttcaagggctctctccggagcagatt 760
| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 241 ggcccccatcaacaagcttcaagggctctcggcggagcagatt 199
Score = 133 bits (67), Expect = 6e-029
Identities = 91/99 (91%)
Strand = Plus / Minus
Query: 761 gttactgaagcaagccaaaacccgaggcacaccctcgctaggaccatcgacaccaggaat 820
|||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||
Sbjct: 105 gttactgaagcaagccaaaacccggggtacaccctcactaggaccatcaacaccaggaat 46
Query: 821 gaaatccatccttggcccaatccaattaaaaggtctcac 859
||| ||||| ||||| ||||||||||| |||||||||||
Sbjct: 45 gaagtccattcttgggccaatccaattgaaaggtctcac 7
>gb|CW492959.1|CW492959 fsbb001f283i04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f283i04, DNA
sequence
Length = 725
Score = 129 bits (65), Expect = 9e-028
Identities = 92/101 (91%)
Strand = Plus / Minus
Query: 906 ctctcaataagttgcttcgcgcaagcataggaccatctttgtttcacgattggaccaaaa 965
||||| ||||| ||||| ||||| ||||||||||||| |||| |||||||||||||||||
Sbjct: 254 ctctcgataagctgctttgcgcatgcataggaccatcgttgtatcacgattggaccaaaa 195
Query: 966 atacagggcgactcatcttctttaagaacataaaattcagg 1006
||| |||| |||||||||||||| |||||||||||||||||
Sbjct: 194 ataaagggtgactcatcttctttcagaacataaaattcagg 154
Score = 91.7 bits (46), Expect = 2e-016
Identities = 67/74 (90%)
Strand = Plus / Minus
Query: 809 gacaccaggaatgaaatccatccttggcccaatccaattaaaaggtctcacgattgtgaa 868
||||||| |||| || ||||| ||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 449 gacaccacgaattaagtccattcttgggccaatccaattgaaaggtctcgcgattgtgaa 390
Query: 869 ttcaaggccatttt 882
||||||||||||||
Sbjct: 389 ttcaaggccatttt 376
>gb|CD207726.1|CD207726 HS1_34_A04.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_34_A04_A012 5', mRNA sequence
Length = 551
Score = 85.7 bits (43), Expect = 1e-014
Identities = 64/71 (90%)
Strand = Plus / Minus
Query: 825 tccatccttggcccaatccaattaaaaggtctcacgattgtgaattcaaggccattttct 884
||||| ||||| ||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 272 tccattcttgggccaatccaattgaaaggtctcgcgattgtgaattcaaggccatttttc 213
Query: 885 gcaccttcagc 895
|| ||||||||
Sbjct: 212 gcgccttcagc 202
>gb|CW205856.1|CW205856 104_634_11187289_148_36956_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187289, DNA
sequence
Length = 659
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 192 atctaacaacacggacatctagggcctc 219
||||||||||| ||||||||||||||||
Sbjct: 66 atctaacaacatggacatctagggcctc 39
>gb|CW408711.1|CW408711 fsbb001f102l13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102l13, DNA
sequence
Length = 762
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1394 ggagccgatgaagccgccggcgcc 1417
||||||||||||||||||||||||
Sbjct: 112 ggagccgatgaagccgccggcgcc 89
>gb|BI141313.1|BI141313 IP1_54_C03.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 270
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 192 atctaacaacacggacatctagggcctc 219
||||||||||| ||||||||||||||||
Sbjct: 140 atctaacaacatggacatctagggcctc 113
Score = 46.1 bits (23), Expect = 0.010
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 255 cttccgaaacaacttaacagctgcgactagg 285
||||||||||| | |||||||||||||||||
Sbjct: 82 cttccgaaacatcataacagctgcgactagg 52
>gb|CF772741.1|CF772741 DSBF1_38_G10.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_38_G10_A010 3', mRNA sequence
Length = 217
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 192 atctaacaacacggacatctagggcctc 219
||||||||||| ||||||||||||||||
Sbjct: 81 atctaacaacatggacatctagggcctc 54
>gb|CW788666.1|CW788666 SP__Ba0047L23.r SP__Ba Sorghum propinquum genomic clone SP__Ba0047L23
3', DNA sequence
Length = 773
Score = 42.1 bits (21), Expect = 0.16
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1392 tgggagccgatgaagccgccg 1412
|||||||||||||||||||||
Sbjct: 220 tgggagccgatgaagccgccg 240
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 432,580
Number of Sequences: 832831
Number of extensions: 432580
Number of successful extensions: 122687
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122594
Number of HSP's gapped (non-prelim): 93
length of query: 1644
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1624
effective length of database: 474,703,049
effective search space: 770917751576
effective search space used: 770917751576
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)