BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404863.2.1
(672 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW379734.1|CW379734 fsbb001f059c14f0 Sorghum methylation... 547 e-154
gb|BM328918.1|BM328918 PIC1_31_C01.g1_A002 Pathogen-infecte... 521 e-146
gb|BI075102.1|BI075102 IP1_19_G10.g1_A002 Immature pannicle... 496 e-138
gb|BM328644.1|BM328644 PIC1_24_G06.g1_A002 Pathogen-infecte... 494 e-138
gb|CW448133.1|CW448133 fsbb001f181j18f0 Sorghum methylation... 488 e-136
gb|CN135824.1|CN135824 OX1_39_D11.b1_A002 Oxidatively-stres... 470 e-131
gb|BG049329.1|BG049329 OV1_18_E11.g1_A002 Ovary 1 (OV1) Sor... 468 e-130
gb|BM328738.1|BM328738 PIC1_26_A02.g1_A002 Pathogen-infecte... 424 e-117
gb|AW282841.2|AW282841 LG1_305_F08.g1_A002 Light Grown 1 (L... 242 3e-062
gb|CD210669.1|CD210669 HS1_49_C03.b1_A012 Heat-shocked seed... 100 3e-019
gb|CD219527.1|CD219527 CCC1_57_C08.b1_A007 Callus culture/c... 92 8e-017
gb|CD221819.1|CD221819 CCC1_71_E09.b1_A007 Callus culture/c... 92 8e-017
gb|CD424085.1|CD424085 SA1_3_E09.b1_A002 Salicylic acid-tre... 92 8e-017
gb|CX616870.1|CX616870 GABR1_30_H12.b1_A002 GA- or brassino... 92 8e-017
>gb|CW379734.1|CW379734 fsbb001f059c14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f059c14, DNA
sequence
Length = 722
Score = 547 bits (276), Expect = e-154
Identities = 434/485 (89%), Gaps = 10/485 (2%)
Strand = Plus / Minus
Query: 1 ggacctggatgtgtcgtggaggatggcgtgaggctttcccgctgcactgtcatgcgtggt 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ggacctggatgtgttgtggaggatggcgtgaggctttcccgctgcactgtcatgcgtggt 437
Query: 61 gtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggtggcactcaactgtt 120
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 436 gtgcgcatcaagaagcatgcttgcatctcaaacagcattatcgggtggcactcaactgtt 377
Query: 121 ggacaatgggcacggatagagaatatgaccatcctgggcgaggatgttcatgggggtgac 180
||| ||||||||||||||||||||||||| |||||||| ||||||||||||| | ||||
Sbjct: 376 ggaaaatgggcacggatagagaatatgactatcctgggggaggatgttcatgtgtgtgat 317
Query: 181 gaggtatacagcaatggcggtgttgttctcccacagaaagagatcaagtcaagcattttg 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 316 gaggtatacagcaatggcggtgttgttctcccacataaagagatcaagtcaagcattctg 257
Query: 241 aagcctgagatcgtcatgtgagagttctccagttttaactacagtacattcttaagttct 300
||||||||||||||||||| ||| |||||||||||| | ||||||||||||||||||||
Sbjct: 256 aagcctgagatcgtcatgt--gagctctccagttttagccacagtacattcttaagttct 199
Query: 301 tccactaagtgaggattgcagatccccttttataagtgatatctattggtatctttggcc 360
| || ||| ||||||| | |||||||||| ||| ||||| ||||||||| | ||
Sbjct: 198 ttgacaaagggaggatttgatatccccttttgtaaacgatattgcctggtatcttcgacc 139
Query: 361 taattcaaacagcttcagacatgtt-------cgcttgctaaactgttgacaatgtatcc 413
|||| |||||||||||| ||||||| | |||| |||||| ||||||||||||||
Sbjct: 138 taatgcaaacagcttcatacatgttctcttgactcttgttaaactattgacaatgtatcc 79
Query: 414 ttgttctttgttgaaaagttttgtacttgtagtgtcaatcatatttcacaagtggttgtc 473
||||||||||||||||||||| |||||| ||||||||| |||||| |||||||| ||||
Sbjct: 78 ttgttctttgttgaaaagtttagtactt-tagtgtcaaccatattccacaagtgattgtg 20
Query: 474 atata 478
|||||
Sbjct: 19 atata 15
>gb|BM328918.1|BM328918 PIC1_31_C01.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 584
Score = 521 bits (263), Expect = e-146
Identities = 402/448 (89%), Gaps = 9/448 (2%)
Strand = Plus / Plus
Query: 1 ggacctggatgtgtcgtggaggatggcgtgaggctttcccgctgcactgtcatgcgtggt 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ggacctggatgtgttgtggaggatggcgtgaggctttcccgctgcactgtcatgcgtggt 192
Query: 61 gtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggtggcactcaactgtt 120
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 193 gtgcgcatcaagaagcatgcttgcatctcaaacagcattatcgggtggcactcaactgtt 252
Query: 121 ggacaatgggcacggatagagaatatgaccatcctgggcgaggatgttcatgggggtgac 180
||| ||||||||||||||||||||||||| |||||||| ||||||||||||| | ||||
Sbjct: 253 ggaaaatgggcacggatagagaatatgactatcctgggggaggatgttcatgtgtgtgat 312
Query: 181 gaggtatacagcaatggcggtgttgttctcccacagaaagagatcaagtcaagcattttg 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 313 gaggtatacagcaatggcggtgttgttctcccacataaagagatcaagtcaagcattctg 372
Query: 241 aagcctgagatcgtcatgtgagagttctccagttttaactacagtacattcttaagttct 300
||||||||||||||||||| ||| |||||||||||| | ||||||||||||||||||||
Sbjct: 373 aagcctgagatcgtcatgt--gagctctccagttttagccacagtacattcttaagttct 430
Query: 301 tccactaagtgaggattgcagatccccttttataagtgatatctattggtatctttggcc 360
| || ||| ||||||| | |||||||||| ||| ||||| ||||||||| | ||
Sbjct: 431 ttgacaaagggaggatttgatatccccttttgtaaacgatattgcctggtatcttcgacc 490
Query: 361 taattcaaacagcttcagacatgtt-------cgcttgctaaactgttgacaatgtatcc 413
|||| |||||||||||| ||||||| | |||| |||||| ||||||||||||||
Sbjct: 491 taatgcaaacagcttcatacatgttctcttgactcttgttaaactattgacaatgtatcc 550
Query: 414 ttgttctttgttgaaaagttttgtactt 441
||||||||||||||||||||| ||||||
Sbjct: 551 ttgttctttgttgaaaagtttagtactt 578
>gb|BI075102.1|BI075102 IP1_19_G10.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 654
Score = 496 bits (250), Expect = e-138
Identities = 386/431 (89%), Gaps = 9/431 (2%)
Strand = Plus / Plus
Query: 1 ggacctggatgtgtcgtggaggatggcgtgaggctttcccgctgcactgtcatgcgtggt 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ggacctggatgtgttgtggaggatggcgtgaggctttcccgctgcactgtcatgcgtggt 284
Query: 61 gtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggtggcactcaactgtt 120
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 285 gtgcgcatcaagaagcatgcttgcatctcaaacagcattatcgggtggcactcaactgtt 344
Query: 121 ggacaatgggcacggatagagaatatgaccatcctgggcgaggatgttcatgggggtgac 180
||| ||||||||||||||||||||||||| |||||||| ||||||||||||| | ||||
Sbjct: 345 ggaaaatgggcacggatagagaatatgactatcctgggggaggatgttcatgtgtgtgat 404
Query: 181 gaggtatacagcaatggcggtgttgttctcccacagaaagagatcaagtcaagcattttg 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 405 gaggtatacagcaatggcggtgttgttctcccacataaagagatcaagtcaagcattctg 464
Query: 241 aagcctgagatcgtcatgtgagagttctccagttttaactacagtacattcttaagttct 300
||||||||||||||||||| ||| |||||||||||| | ||||||||||||||||||||
Sbjct: 465 aagcctgagatcgtcatgt--gagctctccagttttagccacagtacattcttaagttct 522
Query: 301 tccactaagtgaggattgcagatccccttttataagtgatatctattggtatctttggcc 360
| || ||| ||||||| | |||||||||| ||| ||||| ||||||||| | ||
Sbjct: 523 ttgacaaagggaggatttgatatccccttttgtaaacgatattgcctggtatcttcgacc 582
Query: 361 taattcaaacagcttcagacatgtt-------cgcttgctaaactgttgacaatgtatcc 413
|||| |||||||||||| ||||||| | |||| |||||| ||||||||||||||
Sbjct: 583 taatgcaaacagcttcatacatgttctcttgactcttgttaaactattgacaatgtatcc 642
Query: 414 ttgttctttgt 424
|||||||||||
Sbjct: 643 ttgttctttgt 653
>gb|BM328644.1|BM328644 PIC1_24_G06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 585
Score = 494 bits (249), Expect = e-138
Identities = 407/458 (88%), Gaps = 10/458 (2%)
Strand = Plus / Plus
Query: 1 ggacctggatgtgtcgtggaggatggcgtgaggctttcccgctgcactgtcatgcgtggt 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ggacctggatgtgttgtggaggatggcgtgaggctttcccgctgcactgtcatgcgtggt 190
Query: 61 gtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggtggcactcaactgtt 120
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 191 gtgcgcatcaagaagcatgcttgcatctcaaacagcattatcgggtggcactcaactgtt 250
Query: 121 ggacaatgggcacggatagagaatatgaccatcctgggcgaggatgttcatgggggtgac 180
||| ||||||||||||||||||||||||| |||||||| ||||||||| ||| | ||||
Sbjct: 251 ggaaaatgggcacggatagagaatatgactatcctgggggaggatgttaatgtgtgtgat 310
Query: 181 gaggtatacagcaatggcggtgttgttctcccacagaaagagatcaagtcaagcattttg 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 311 gaggtatacagcaatggcggtgttgttctcccacataaagagatcaagtcaagcattctg 370
Query: 241 aagcctgagatcgtcatgtgagagttctccagttttaactacagtacattcttaagttct 300
||||||||||||||||||| ||| |||||||||||| | ||||||||||||||||||||
Sbjct: 371 aagcctgagatcgtcatgt--gagctctccagttttagccacagtacattcttaagttct 428
Query: 301 tccactaagtgaggattgcagatccccttttataagtgatatctattggtatctttggcc 360
| || ||| ||||||| | |||||||||| ||| ||||| ||||||||| | ||
Sbjct: 429 ttgacaaagggaggatttgatatccccttttgtaaacgatattgcctggtatcttcgacc 488
Query: 361 taattcaaacagcttcagacatgtt-------cgcttgctaaactgttgacaatgtatcc 413
|||| |||||||||||| ||||||| | |||| |||||| ||||||||||||||
Sbjct: 489 taatgcaaacagcttcatacatgttctcttgactcttgttaaactattgacaatgtatcc 548
Query: 414 ttgttctttgttgaaaagttttgtacttgtagtgtcaa 451
||||||||||| | | ||||| |||||| |||||||||
Sbjct: 549 ttgttctttgtgggatagtttagtactt-tagtgtcaa 585
>gb|CW448133.1|CW448133 fsbb001f181j18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f181j18, DNA
sequence
Length = 524
Score = 488 bits (246), Expect = e-136
Identities = 382/427 (89%), Gaps = 9/427 (2%)
Strand = Plus / Minus
Query: 1 ggacctggatgtgtcgtggaggatggcgtgaggctttcccgctgcactgtcatgcgtggt 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ggacctggatgtgttgtggaggatggcgtgaggctttcccgctgcactgtcatgcgtggt 366
Query: 61 gtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggtggcactcaactgtt 120
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 365 gtgcgcatcaagaagcatgcttgcatctcaaacagcattatcgggtggcactcaactgtt 306
Query: 121 ggacaatgggcacggatagagaatatgaccatcctgggcgaggatgttcatgggggtgac 180
||| ||||||||||||||||||||||||| |||||||| ||||||||||||| | ||||
Sbjct: 305 ggaaaatgggcacggatagagaatatgactatcctgggggaggatgttcatgtgtgtgat 246
Query: 181 gaggtatacagcaatggcggtgttgttctcccacagaaagagatcaagtcaagcattttg 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 245 gaggtatacagcaatggcggtgttgttctcccacataaagagatcaagtcaagcattctg 186
Query: 241 aagcctgagatcgtcatgtgagagttctccagttttaactacagtacattcttaagttct 300
||||||||||||||||||| ||| |||||||||||| | ||||||||||||||||||||
Sbjct: 185 aagcctgagatcgtcatgt--gagctctccagttttagccacagtacattcttaagttct 128
Query: 301 tccactaagtgaggattgcagatccccttttataagtgatatctattggtatctttggcc 360
| || ||| ||||||| | |||||||||| ||| ||||| ||||||||| | ||
Sbjct: 127 ttgacaaagggaggatttgatatccccttttgtaaacgatattgcctggtatcttcgacc 68
Query: 361 taattcaaacagcttcagacatgtt-------cgcttgctaaactgttgacaatgtatcc 413
|||| |||||||||||| ||||||| | |||| |||||| ||||||||||||||
Sbjct: 67 taatgcaaacagcttcatacatgttctcttgactcttgttaaactattgacaatgtatcc 8
Query: 414 ttgttct 420
|||||||
Sbjct: 7 ttgttct 1
>gb|CN135824.1|CN135824 OX1_39_D11.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_39_D11_A002 3', mRNA sequence
Length = 763
Score = 470 bits (237), Expect = e-131
Identities = 342/376 (90%), Gaps = 2/376 (0%)
Strand = Plus / Plus
Query: 1 ggacctggatgtgtcgtggaggatggcgtgaggctttcccgctgcactgtcatgcgtggt 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ggacctggatgtgttgtggaggatggcgtgaggctttcccgctgcactgtcatgcgtggt 449
Query: 61 gtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggtggcactcaactgtt 120
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 450 gtgcgcatcaagaagcatgcttgcatctcaaacagcattatcgggtggcactcaactgtt 509
Query: 121 ggacaatgggcacggatagagaatatgaccatcctgggcgaggatgttcatgggggtgac 180
||| ||||||||||||||||||||||||| |||||||| ||||||||||||| | ||||
Sbjct: 510 ggaaaatgggcacggatagagaatatgactatcctgggggaggatgttcatgtgtgtgat 569
Query: 181 gaggtatacagcaatggcggtgttgttctcccacagaaagagatcaagtcaagcattttg 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 570 gaggtatacagcaatggcggtgttgttctcccacataaagagatcaagtcaagcattctg 629
Query: 241 aagcctgagatcgtcatgtgagagttctccagttttaactacagtacattcttaagttct 300
||||||||||||||||||| ||| |||||||||||| | ||||||||||||||||||||
Sbjct: 630 aagcctgagatcgtcatgt--gagctctccagttttagccacagtacattcttaagttct 687
Query: 301 tccactaagtgaggattgcagatccccttttataagtgatatctattggtatctttggcc 360
| || ||| ||||||| | |||||||||| ||| ||||| ||||||||| | ||
Sbjct: 688 ttgacaaagggaggatttgatatccccttttgtaaacgatattgcctggtatcttcgacc 747
Query: 361 taattcaaacagcttc 376
|||| |||||||||||
Sbjct: 748 taatgcaaacagcttc 763
>gb|BG049329.1|BG049329 OV1_18_E11.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 694
Score = 468 bits (236), Expect = e-130
Identities = 351/387 (90%), Gaps = 3/387 (0%)
Strand = Plus / Plus
Query: 1 ggacctggatgtgtcgtggaggatggcgtgaggctttcccgctgcactgtcatgcgtggt 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ggacctggatgtgttgtggaggatggcgtgaggctttcccgctgcactgtcatgcgtggt 366
Query: 61 gtgcgtatcaagaagcatgcctgcatctcgaacagcattatcgggtggcactcaactgtt 120
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 367 gtgcgcatcaagaagcatgcttgcatctcaaacagcattatcgggtggcactcaactgtt 426
Query: 121 ggacaatgggcacggatagagaatatgaccatcctgggcgaggatgttcatgggggtgac 180
||| ||||||||||||||||||||||||| |||||||| ||||||||||||| | ||||
Sbjct: 427 ggaaaatgggcacggatagagaatatgactatcctgggggaggatgttcatgtgtgtgat 486
Query: 181 gaggtatacagcaatggcggtgttgttctcccacagaaagagatcaagtcaagcattttg 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 487 gaggtatacagcaatggcggtgttgttctcccacataaagagatcaagtcaagcattctg 546
Query: 241 aagcctgagatcgtcatgtgagagttctccagttttaactacagtacattcttaagttct 300
||||||||||||||||||| ||| |||||||||||| | ||||||||||||||||||||
Sbjct: 547 aagcctgagatcgtcatgt--gagctctccagttttagccacagtacattcttaagttct 604
Query: 301 tccactaagtgaggattgcagatccccttttataagtgatatctattggtatctttg-gc 359
| || ||| ||||||| | |||||||||| ||| ||||| ||||||||| | |
Sbjct: 605 ttgacaaagggaggatttgatatccccttttgtaaacgatattgcctggtatcttcgacc 664
Query: 360 ctaattcaaacagcttcagacatgttc 386
||||| |||||||||||| ||||||||
Sbjct: 665 ctaatgcaaacagcttcatacatgttc 691
>gb|BM328738.1|BM328738 PIC1_26_A02.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 575
Score = 424 bits (214), Expect = e-117
Identities = 434/503 (86%), Gaps = 22/503 (4%)
Strand = Plus / Plus
Query: 127 tgggcacggatagagaatatgaccatcctgggcgaggatgttcatgggggtgacgaggta 186
||||||||||||||||||||||| |||||||| ||||||||||||| | |||| ||||||
Sbjct: 1 tgggcacggatagagaatatgactatcctgggggaggatgttcatgtgtgtgatgaggta 60
Query: 187 tacagcaatggcggtgttgttctcccacagaaagagatcaagtcaagcattttgaagcct 246
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 61 tacagcaatggcggtgttgttctcccacataaagagatcaagtcaagcattctgaagcct 120
Query: 247 gagatcgtcatgtgagagttctccagttttaactacagtacattcttaagttcttccact 306
||||||||||||| ||| |||||||||||| | ||||||||||||||||||||| ||
Sbjct: 121 gagatcgtcatgt--gagctctccagttttagccacagtacattcttaagttctttgaca 178
Query: 307 aagtgaggattgcagatccccttttataagtgatatctattggtatctttggcctaattc 366
||| ||||||| | |||||||||| ||| ||||| ||||||||| | |||||| |
Sbjct: 179 aagggaggatttgatatccccttttgtaaacgatattgcctggtatcttcgacctaatgc 238
Query: 367 aaacagcttcagacatgtt-------cgcttgctaaactgttgacaatgtatccttgttc 419
||||||||||| ||||||| | |||| |||||| ||||||||||||||||||||
Sbjct: 239 aaacagcttcatacatgttctcttgactcttgttaaactattgacaatgtatccttgttc 298
Query: 420 tttgttgaaaagttttgtacttgtagtgtcaatcatatttcacaagtggttgtcatataa 479
||||||||||||||| |||||| ||||||||| |||||| |||||||| |||| || |
Sbjct: 299 tttgttgaaaagtttagtactt-tagtgtcaaccatattccacaagtgattgtgat---a 354
Query: 480 tactgag---ggaggttttggacccttgatctgcagaagttcaataccatagtagcaaga 536
||||||| ||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 355 tactgagcttggaggttttggacccttgatctgcagaagttcaatgc---aatagcaaga 411
Query: 537 ataagtttatttttaaatgttgtccaatgtaactttcagcagtaatgtttgtgtgctaaa 596
|||||| | |||||| |||||| ||||||||||| |||||||||||||||| |||
Sbjct: 412 gtaagttaa---aaaaatgtggtccaaggtaactttcagtagtaatgtttgtgtgccaaa 468
Query: 597 tgctctcccggagaaatgtacac 619
|||||| ||||||||||||||||
Sbjct: 469 tgctcttccggagaaatgtacac 491
>gb|AW282841.2|AW282841 LG1_305_F08.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 498
Score = 242 bits (122), Expect = 3e-062
Identities = 269/315 (85%), Gaps = 16/315 (5%)
Strand = Plus / Plus
Query: 217 aaagagatcaagtcaagcattttgaagcctgagatcgtcatgtgagagttctccagtttt 276
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 1 aaagagatcaagtcaagcattctgaagcctgagatcgtcatgtgagc--tctccagtttt 58
Query: 277 aactacagtacattcttaagttcttccactaagtgaggattgcagatccccttttataag 336
| | ||||||||||||||||||||| || ||| ||||||| | |||||||||| |||
Sbjct: 59 agccacagtacattcttaagttctttgacaaagggaggatttgatatccccttttgtaaa 118
Query: 337 tgatatctattggtatctttggcctaattcaaacagcttcagacatgttcgcttgc---- 392
||||| ||||||||| | |||||| |||||||||||| |||||||| ||||
Sbjct: 119 cgatattgcctggtatcttcgacctaatgcaaacagcttcatacatgttctcttgactct 178
Query: 393 ---taaactgttgacaatgtatccttgttctttgttgaaaagttttgtacttgtagtgtc 449
|||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 179 tgttaaactattgacaatgtatccttgttctttgttgaaaagtttagtactt-tagtgtc 237
Query: 450 aatcatatttcacaagtggttgtcatataatactgag---ggaggttttggacccttgat 506
|| |||||| |||||||| |||| ||||| ||||| ||||||||||||||||||||
Sbjct: 238 aaccatattccacaagtgattgtgatata---ctgagcttggaggttttggacccttgat 294
Query: 507 ctgcagaagttcaat 521
|||||||||||||||
Sbjct: 295 ctgcagaagttcaat 309
Score = 97.6 bits (49), Expect = 1e-018
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 551 aaatgttgtccaatgtaactttcagcagtaatgtttgtgtgctaaatgctctcccggaga 610
|||||| |||||| ||||||||||| |||||||||||||||| ||||||||| |||||||
Sbjct: 333 aaatgtggtccaaggtaactttcagtagtaatgtttgtgtgccaaatgctcttccggaga 392
Query: 611 aatgtacac 619
|||||||||
Sbjct: 393 aatgtacac 401
>gb|CD210669.1|CD210669 HS1_49_C03.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_49_C03_A012 3', mRNA sequence
Length = 589
Score = 99.6 bits (50), Expect = 3e-019
Identities = 185/230 (80%)
Strand = Plus / Plus
Query: 32 ggctttcccgctgcactgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcga 91
|||| ||||||||||| |||||||| || | ||| | ||| |||| |||||| |||| |
Sbjct: 118 ggctgtcccgctgcaccgtcatgcgcggcgcgcgcgtgaagcagcacgcctgcgtctcca 177
Query: 92 acagcattatcgggtggcactcaactgttggacaatgggcacggatagagaatatgacca 151
|||||| ||||| |||||||| || |||||| | |||||||| | ||||| |||||||
Sbjct: 178 gcagcatcatcggatggcactccaccgttggaaagtgggcacgcgtggagaacatgacca 237
Query: 152 tcctgggcgaggatgttcatgggggtgacgaggtatacagcaatggcggtgttgttctcc 211
|||| || ||||| || || | |||||||| | |||||||| ||||| || || ||||
Sbjct: 238 tccttggggaggacgtgcacgtctgtgacgagatctacagcaacggcggcgtcgtgctcc 297
Query: 212 cacagaaagagatcaagtcaagcattttgaagcctgagatcgtcatgtga 261
| || || ||||||||||| ||||| | ||||| |||||||||||||||
Sbjct: 298 cgcacaaggagatcaagtccagcatcctcaagcccgagatcgtcatgtga 347
>gb|CD219527.1|CD219527 CCC1_57_C08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_57_C08_A007 3', mRNA sequence
Length = 630
Score = 91.7 bits (46), Expect = 8e-017
Identities = 184/230 (80%)
Strand = Plus / Plus
Query: 32 ggctttcccgctgcactgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcga 91
|||| ||||||||||| |||||||| || | ||| | ||| |||| |||||| |||| |
Sbjct: 166 ggctgtcccgctgcaccgtcatgcgcggcgcgcgcgtgaagcagcacgcctgcgtctcca 225
Query: 92 acagcattatcgggtggcactcaactgttggacaatgggcacggatagagaatatgacca 151
|||||| ||||| |||||||| || |||||| | |||||||| | ||||| |||||||
Sbjct: 226 gcagcatcatcggatggcactccaccgttggaaagtgggcacgcgtggagaacatgacca 285
Query: 152 tcctgggcgaggatgttcatgggggtgacgaggtatacagcaatggcggtgttgttctcc 211
|||| || ||||| || || | | |||||| | |||||||| ||||| || || ||||
Sbjct: 286 tccttggggaggacgtgcacgtctgcgacgagatctacagcaacggcggcgtcgtgctcc 345
Query: 212 cacagaaagagatcaagtcaagcattttgaagcctgagatcgtcatgtga 261
| || || ||||||||||| ||||| | ||||| |||||||||||||||
Sbjct: 346 cgcacaaggagatcaagtccagcatcctcaagcccgagatcgtcatgtga 395
>gb|CD221819.1|CD221819 CCC1_71_E09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_71_E09_A007 3', mRNA sequence
Length = 604
Score = 91.7 bits (46), Expect = 8e-017
Identities = 184/230 (80%)
Strand = Plus / Plus
Query: 32 ggctttcccgctgcactgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcga 91
|||| ||||||||||| |||||||| || | ||| | ||| |||| |||||| |||| |
Sbjct: 102 ggctgtcccgctgcaccgtcatgcgcggcgcgcgcgtgaagcagcacgcctgcgtctcca 161
Query: 92 acagcattatcgggtggcactcaactgttggacaatgggcacggatagagaatatgacca 151
|||||| ||||| |||||||| || |||||| | |||||||| | ||||| |||||||
Sbjct: 162 gcagcatcatcggatggcactccaccgttggaaagtgggcacgcgtggagaacatgacca 221
Query: 152 tcctgggcgaggatgttcatgggggtgacgaggtatacagcaatggcggtgttgttctcc 211
|||| || ||||| || || | | |||||| | |||||||| ||||| || || ||||
Sbjct: 222 tccttggggaggacgtgcacgtctgcgacgagatctacagcaacggcggcgtcgtgctcc 281
Query: 212 cacagaaagagatcaagtcaagcattttgaagcctgagatcgtcatgtga 261
| || || ||||||||||| ||||| | ||||| |||||||||||||||
Sbjct: 282 cgcacaaggagatcaagtccagcatcctcaagcccgagatcgtcatgtga 331
>gb|CD424085.1|CD424085 SA1_3_E09.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_3_E09_A002 3', mRNA sequence
Length = 634
Score = 91.7 bits (46), Expect = 8e-017
Identities = 184/230 (80%)
Strand = Plus / Plus
Query: 32 ggctttcccgctgcactgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcga 91
|||| ||||||||||| |||||||| || | ||| | ||| |||| |||||| |||| |
Sbjct: 160 ggctgtcccgctgcaccgtcatgcgcggcgcgcgcgtgaagcagcacgcctgcgtctcca 219
Query: 92 acagcattatcgggtggcactcaactgttggacaatgggcacggatagagaatatgacca 151
|||||| ||||| |||||||| || |||||| | |||||||| | ||||| |||||||
Sbjct: 220 gcagcatcatcggatggcactccaccgttggaaagtgggcacgcgtggagaacatgacca 279
Query: 152 tcctgggcgaggatgttcatgggggtgacgaggtatacagcaatggcggtgttgttctcc 211
|||| || ||||| || || | | |||||| | |||||||| ||||| || || ||||
Sbjct: 280 tccttggggaggacgtgcacgtctgcgacgagatctacagcaacggcggcgtcgtgctcc 339
Query: 212 cacagaaagagatcaagtcaagcattttgaagcctgagatcgtcatgtga 261
| || || ||||||||||| ||||| | ||||| |||||||||||||||
Sbjct: 340 cgcacaaggagatcaagtccagcatcctcaagcccgagatcgtcatgtga 389
>gb|CX616870.1|CX616870 GABR1_30_H12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_30_H12_A002 3', mRNA sequence
Length = 771
Score = 91.7 bits (46), Expect = 8e-017
Identities = 184/230 (80%)
Strand = Plus / Plus
Query: 32 ggctttcccgctgcactgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcga 91
|||| ||||||||||| |||||||| || | ||| | ||| |||| |||||| |||| |
Sbjct: 306 ggctgtcccgctgcaccgtcatgcgcggcgcgcgcgtgaagcagcacgcctgcgtctcca 365
Query: 92 acagcattatcgggtggcactcaactgttggacaatgggcacggatagagaatatgacca 151
|||||| ||||| |||||||| || |||||| | |||||||| | ||||| |||||||
Sbjct: 366 gcagcatcatcggatggcactccaccgttggaaagtgggcacgcgtggagaacatgacca 425
Query: 152 tcctgggcgaggatgttcatgggggtgacgaggtatacagcaatggcggtgttgttctcc 211
|||| || ||||| || || | | |||||| | |||||||| ||||| || || ||||
Sbjct: 426 tccttggggaggacgtgcacgtctgcgacgagatctacagcaacggcggcgtcgtgctcc 485
Query: 212 cacagaaagagatcaagtcaagcattttgaagcctgagatcgtcatgtga 261
| || || ||||||||||| ||||| | ||||| |||||||||||||||
Sbjct: 486 cgcacaaggagatcaagtccagcatcctcaagcccgagatcgtcatgtga 535
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 171,703
Number of Sequences: 832831
Number of extensions: 171703
Number of successful extensions: 46989
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46939
Number of HSP's gapped (non-prelim): 27
length of query: 672
length of database: 491,359,669
effective HSP length: 19
effective length of query: 653
effective length of database: 475,535,880
effective search space: 310524929640
effective search space used: 310524929640
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)