BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404858.2.1
(958 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW182784.1|CW182784 104_598_11164264_116_36670_058 Sorgh... 781 0.0
gb|CN138418.1|CN138418 OX1_63_E01.g1_A002 Oxidatively-stres... 771 0.0
gb|BG412301.1|BG412301 OV2_40_C07.b1_A002 Ovary 2 (OV2) Sor... 476 e-132
gb|CW158850.1|CW158850 104_564_11149046_148_36401_051 Sorgh... 337 1e-090
gb|CW182785.1|CW182785 104_598_11164264_148_36669_058 Sorgh... 319 3e-085
gb|BI141571.1|BI141571 IP1_54_B04.b1_A002 Immature pannicle... 248 8e-064
gb|CW499023.1|CW499023 fsbb001f293j08f0 Sorghum methylation... 210 2e-052
gb|CW158106.1|CW158106 104_561_11147878_116_36390_083 Sorgh... 208 7e-052
gb|CW158107.1|CW158107 104_561_11147878_148_36389_083 Sorgh... 145 9e-033
gb|BG054340.1|BG054340 OV2_3_A08.b1_A002 Ovary 2 (OV2) Sorg... 135 8e-030
gb|CW499024.1|CW499024 fsbb001f293j08k0 Sorghum methylation... 125 8e-027
gb|BG054069.1|BG054069 OV2_3_A08.g1_A002 Ovary 2 (OV2) Sorg... 111 1e-022
gb|BE917665.1|BE917665 OV1_6_F01.g1_A002 Ovary 1 (OV1) Sorg... 103 3e-020
gb|BE917743.1|BE917743 OV1_6_F01.b1_A002 Ovary 1 (OV1) Sorg... 103 3e-020
gb|BI141306.1|BI141306 IP1_54_B04.g1_A002 Immature pannicle... 80 4e-013
gb|CW313125.1|CW313125 104_803_11471123_148_35790_044 Sorgh... 50 4e-004
gb|CW338135.1|CW338135 104_838_11484582_116_36125_025 Sorgh... 50 4e-004
gb|BG241362.1|BG241362 RHIZ2_51_B01.g1_A003 Rhizome2 (RHIZ2... 50 4e-004
gb|BG465984.1|BG465984 RHIZ2_47_B01.g1_A003 Rhizome2 (RHIZ2... 50 4e-004
gb|CW260769.1|CW260769 104_727_11229143_116_35195_086 Sorgh... 46 0.006
gb|AW923985.1|AW923985 WS1_32_F10.b1_A002 Water-stressed 1 ... 46 0.006
gb|BE592617.1|BE592617 WS1_95_H02.b1_A002 Water-stressed 1 ... 46 0.006
gb|CW303507.1|CW303507 104_788_11465276_148_35698_080 Sorgh... 44 0.024
gb|CW045261.1|CW045261 104_281_10509453_114_30236 Sorghum m... 42 0.093
gb|BE367622.1|BE367622 PI1_9_A01.g1_A002 Pathogen induced 1... 42 0.093
gb|BG558119.1|BG558119 RHIZ2_67_A12.g1_A003 Rhizome2 (RHIZ2... 42 0.093
gb|CW092958.1|CW092958 104_455_10999481_116_33051_067 Sorgh... 40 0.37
gb|CW199664.1|CW199664 104_624_11183633_116_37058_065 Sorgh... 40 0.37
gb|CW199665.1|CW199665 104_624_11183633_148_36850_065 Sorgh... 40 0.37
gb|CW241893.1|CW241893 104_701_11219026_148_37557_043 Sorgh... 40 0.37
gb|CW303506.1|CW303506 104_788_11465276_116_35694_080 Sorgh... 40 0.37
gb|CW325782.1|CW325782 104_820_11477874_116_35926_065 Sorgh... 40 0.37
gb|CW325783.1|CW325783 104_820_11477874_148_35927_065 Sorgh... 40 0.37
gb|CW326303.1|CW326303 104_821_11478147_148_36063_006 Sorgh... 40 0.37
gb|CW360143.1|CW360143 fsbb001f028b16f0 Sorghum methylation... 40 0.37
gb|CW457734.1|CW457734 fsbb001f203k22k0 Sorghum methylation... 40 0.37
gb|AW679848.1|AW679848 WS1_32_F10.g1_A002 Water-stressed 1 ... 40 0.37
gb|BE592747.1|BE592747 WS1_95_H02.g1_A002 Water-stressed 1 ... 40 0.37
gb|BG357669.1|BG357669 OV2_32_G10.g1_A002 Ovary 2 (OV2) Sor... 40 0.37
gb|CD224131.1|CD224131 CCC1_32_B09.b1_A007 Callus culture/c... 40 0.37
gb|CD224241.1|CD224241 CCC1_32_B09.g1_A007 Callus culture/c... 40 0.37
>gb|CW182784.1|CW182784 104_598_11164264_116_36670_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164264, DNA
sequence
Length = 602
Score = 781 bits (394), Expect = 0.0
Identities = 511/550 (92%)
Strand = Plus / Minus
Query: 1 cgcgtctgcgccgatctcggcgcgggtgccgccagctacgtccactgcgacgtcaccagc 60
|||||||||||||| | |||||||| |||||||||||| ||||||||||||| ||||||
Sbjct: 550 cgcgtctgcgccgacgttggcgcgggcgccgccagctacttccactgcgacgtgaccagc 491
Query: 61 gaggacgacgtcgcggccgcggtggaccacgccgtggcgacgttcggcgcgctggacatc 120
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 490 gaggacgacgtcgctgccgcggtggaccacgccgtggcgacgttcggagcgctggatatc 431
Query: 121 atgttcaacaacgcgggcgtcagcgggccggcgtgctacagcgtccgggagagcggcaag 180
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 430 atgttcaacaatgctggcgtcagcgggccggcgtgctacagcgtccgggacagcggcaag 371
Query: 181 gctgacttcgagcgcgtgctggccgtgaatctggtgggcccgttcctcggcaccaagcac 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 370 gctgacttcgagcgcgtgctggccgtgaacctggtgggcccgttcctcggcaccaagcac 311
Query: 241 gcggcgcgggtgatggtgccctcgcgccgcggtggctgcatcatagggacgtcgagcgtg 300
||||||||||||||||| ||| |||||||||| |||||||||||||||||||| ||||||
Sbjct: 310 gcggcgcgggtgatggtacccgcgcgccgcggcggctgcatcatagggacgtccagcgtg 251
Query: 301 gcggcggcagtgactggcgtgtcgtcgtacgcgtacgcgtgcgcgaagcgcgcgatggtg 360
|||||||| ||||| |||| ||| |||||||||||||||||||||||||||||| | |||
Sbjct: 250 gcggcggccgtgaccggcgcgtcctcgtacgcgtacgcgtgcgcgaagcgcgcgctcgtg 191
Query: 361 actctgacggagaacgcggctgcggagctcggccagcacggcattcgcgtgaactgcgtc 420
| |||||||||||||| || ||||||||||||| ||||||||| |||||||||||||||
Sbjct: 190 gcgctgacggagaacgccgcggcggagctcggccggcacggcatccgcgtgaactgcgtc 131
Query: 421 tcccccgcgggggtcgccacgccgctgaccatgaggtacatgggcctcgaggcggaggcg 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 130 tcccccgcgggggtcgccacgccgctgaccatgaggtacatgggcctcgaagcggaggcg 71
Query: 481 ttggagcaggcaatggagggcatggccaacctcaagggcgtgggcgcactgcgggtgcac 540
|| |||||||||||||||| ||| | |||||||||||||||||||| ||||| | | ||
Sbjct: 70 ttcgagcaggcaatggaggccatatcaaacctcaagggcgtgggcgccctgcgagcggac 11
Query: 541 gacgtcgccg 550
||||||||||
Sbjct: 10 gacgtcgccg 1
>gb|CN138418.1|CN138418 OX1_63_E01.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_63_E01_A002 5', mRNA sequence
Length = 709
Score = 771 bits (389), Expect = 0.0
Identities = 497/533 (93%)
Strand = Plus / Plus
Query: 1 cgcgtctgcgccgatctcggcgcgggtgccgccagctacgtccactgcgacgtcaccagc 60
|||||||||||||| | |||||||| |||||||||||| ||||||||||||| ||||||
Sbjct: 165 cgcgtctgcgccgacgttggcgcgggcgccgccagctacttccactgcgacgtgaccagc 224
Query: 61 gaggacgacgtcgcggccgcggtggaccacgccgtggcgacgttcggcgcgctggacatc 120
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 225 gaggacgacgtcgctgccgcggtggaccacgccgtggcgacgttcggagcgctggatatc 284
Query: 121 atgttcaacaacgcgggcgtcagcgggccggcgtgctacagcgtccgggagagcggcaag 180
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 285 atgttcaacaatgctggcgtcagcgggccggcgtgctacagcgtccgggacagcggcaag 344
Query: 181 gctgacttcgagcgcgtgctggccgtgaatctggtgggcccgttcctcggcaccaagcac 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 345 gctgacttcgagcgcgtgctggccgtgaacctggtgggcccgttcctcggcaccaagcac 404
Query: 241 gcggcgcgggtgatggtgccctcgcgccgcggtggctgcatcatagggacgtcgagcgtg 300
||||||||||||||||| ||| |||||||||| |||||||||||||||||||| ||||||
Sbjct: 405 gcggcgcgggtgatggtacccgcgcgccgcggcggctgcatcatagggacgtccagcgtg 464
Query: 301 gcggcggcagtgactggcgtgtcgtcgtacgcgtacgcgtgcgcgaagcgcgcgatggtg 360
|||||||| ||||| |||| ||| |||||||||||||||||||||||||||||| | |||
Sbjct: 465 gcggcggccgtgaccggcgcgtcctcgtacgcgtacgcgtgcgcgaagcgcgcgctcgtg 524
Query: 361 actctgacggagaacgcggctgcggagctcggccagcacggcattcgcgtgaactgcgtc 420
| |||||||||||||| || ||||||||||||| ||||||||| |||||||||||||||
Sbjct: 525 gcgctgacggagaacgccgcggcggagctcggccggcacggcatccgcgtgaactgcgtc 584
Query: 421 tcccccgcgggggtcgccacgccgctgaccatgaggtacatgggcctcgaggcggaggcg 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 585 tcccccgcgggggtcgccacgccgctgaccatgaggtacatgggcctcgaagcggaggcg 644
Query: 481 ttggagcaggcaatggagggcatggccaacctcaagggcgtgggcgcactgcg 533
|| |||||||||||||||| ||| | |||||||||||||||||||| |||||
Sbjct: 645 ttcgagcaggcaatggaggccatatcaaacctcaagggcgtgggcgccctgcg 697
>gb|BG412301.1|BG412301 OV2_40_C07.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 485
Score = 476 bits (240), Expect = e-132
Identities = 291/308 (94%)
Strand = Plus / Plus
Query: 1 cgcgtctgcgccgatctcggcgcgggtgccgccagctacgtccactgcgacgtcaccagc 60
|||||||||||||| | |||||||| |||||||||||| ||||||||||||| ||||||
Sbjct: 175 cgcgtctgcgccgacgttggcgcgggcgccgccagctacttccactgcgacgtgaccagc 234
Query: 61 gaggacgacgtcgcggccgcggtggaccacgccgtggcgacgttcggcgcgctggacatc 120
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 235 gaggacgacgtcgctgccgcggtggaccacgccgtggcgacgttcggagcgctggatatc 294
Query: 121 atgttcaacaacgcgggcgtcagcgggccggcgtgctacagcgtccgggagagcggcaag 180
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 295 atgttcaacaatgctggcgtcagcgggccggcgtgctacagcgtccgggacagcggcaag 354
Query: 181 gctgacttcgagcgcgtgctggccgtgaatctggtgggcccgttcctcggcaccaagcac 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 355 gctgacttcgagcgcgtgctggccgtgaacctggtgggcccgttcctcggcaccaagcac 414
Query: 241 gcggcgcgggtgatggtgccctcgcgccgcggtggctgcatcatagggacgtcgagcgtg 300
||||||||||||||||| ||| |||||||||| |||||||||||||||||||| ||||||
Sbjct: 415 gcggcgcgggtgatggtacccgcgcgccgcggcggctgcatcatagggacgtccagcgtg 474
Query: 301 gcggcggc 308
||||||||
Sbjct: 475 gcggcggc 482
>gb|CW158850.1|CW158850 104_564_11149046_148_36401_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149046, DNA
sequence
Length = 686
Score = 337 bits (170), Expect = 1e-090
Identities = 484/588 (82%), Gaps = 3/588 (0%)
Strand = Plus / Minus
Query: 30 cgccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggacca 89
|||||||||||| ||||||||||||||| ||||| |||||||||||| || ||||||||
Sbjct: 661 cgccagctacgtgcactgcgacgtcaccgtcgaggccgacgtcgcggcggccgtggacca 602
Query: 90 cgccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggcc 149
||||||||| ||||||||||||||||||||||||||||||||||||| || |||| |
Sbjct: 601 cgccgtggcccggttcggcgcgctggacatcatgttcaacaacgcgggcatcggcggcgc 542
Query: 150 ggcgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtgaa 209
||| ||| ||||| ||||||||||| ||||| ||||||||||||||||| |||| ||
Sbjct: 541 ggcttgccacagcatccgggagagcaccaaggaggacttcgagcgcgtgctctccgtcaa 482
Query: 210 tctggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgccg 269
|| ||||| |||||||| ||||||||||||||||||||||| ||||| ||| || ||||
Sbjct: 481 cctcgtgggaccgttcctgggcaccaagcacgcggcgcgggtcatggtccccgcgggccg 422
Query: 270 cggtggctgcatcatagggacgtcgagcgtggcggcggcagtgactggcgtgtcgtcgta 329
||| ||||||||||| || ||||| ||| | || | || ||| | |||| ||||| |
Sbjct: 421 cggcggctgcatcatcggcacgtccagcctcgcctccgcggtggccggcgccgcgtcgca 362
Query: 330 cgcgtacgcgtgcgcgaagcgcgcgatggtgactctgacggagaacgcggctgcggagct 389
||| ||| ||||||| ||||||| | ||| | || ||||||||||| || ||||||||
Sbjct: 361 cgcctacacgtgcgccaagcgcggcctcgtggcgctcacggagaacgccgccgcggagct 302
Query: 390 cggccagcacggcattcgcgtgaactgcgtctcccccgcgggggtcgccacgccgctgac 449
|| | ||||| || || || ||||||||||| ||||| | || ||||||||||| |
Sbjct: 301 gggtcgccacgggatccgggtcaactgcgtctcgcccgccgcggctgccacgccgctcgc 242
Query: 450 catgaggtacatgggcctcgaggcggaggcgttggagcaggcaatggagggcatggccaa 509
|| | |||| |||| || |||| ||||||||| |||||||| ||||||| | | || ||
Sbjct: 241 cacggcgtacgtgggactggagggggaggcgttcgagcaggccatggaggccgtcgctaa 182
Query: 510 cctcaagggcgtgggcgcactgcgggtgcacgacgtcgccgccgccgtgcgcttcctggc 569
|||||||||||| || ||||||||| ||| ||||||||||||||| || ||| ||
Sbjct: 181 cctcaagggcgttcgc---ctgcgggtggcggacatcgccgccgccgtgctctacctcgc 125
Query: 570 cagcgatgacgcgaggtacatcagcggccacaacctgttcgtcgacgg 617
|||||| |||||| ||||||||||||| ||||||||| || |||||||
Sbjct: 124 cagcgacgacgcgcggtacatcagcgggcacaacctgctcctcgacgg 77
>gb|CW182785.1|CW182785 104_598_11164264_148_36669_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164264, DNA
sequence
Length = 704
Score = 319 bits (161), Expect = 3e-085
Identities = 197/209 (94%)
Strand = Plus / Plus
Query: 1 cgcgtctgcgccgatctcggcgcgggtgccgccagctacgtccactgcgacgtcaccagc 60
|||||||||||||| | |||||||| |||||||||||| ||||||||||||| ||||||
Sbjct: 492 cgcgtctgcgccgacgttggcgcgggcgccgccagctacttccactgcgacgtgaccagc 551
Query: 61 gaggacgacgtcgcggccgcggtggaccacgccgtggcgacgttcggcgcgctggacatc 120
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 552 gaggacgacgtcgctgccgcggtggaccacgccgtggcgacgttcggagcgctggatatc 611
Query: 121 atgttcaacaacgcgggcgtcagcgggccggcgtgctacagcgtccgggagagcggcaag 180
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 612 atgttcaacaatgctggcgtcagcgggccggcgtgctacagcgtccgggacagcggcaag 671
Query: 181 gctgacttcgagcgcgtgctggccgtgaa 209
|||||||||||||||||||||||||||||
Sbjct: 672 gctgacttcgagcgcgtgctggccgtgaa 700
>gb|BI141571.1|BI141571 IP1_54_B04.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 359
Score = 248 bits (125), Expect = 8e-064
Identities = 158/169 (93%)
Strand = Plus / Plus
Query: 1 cgcgtctgcgccgatctcggcgcgggtgccgccagctacgtccactgcgacgtcaccagc 60
|||||||||||||| | |||||||| |||||||||||| ||||||||||||| ||||||
Sbjct: 191 cgcgtctgcgccgacgttggcgcgggcgccgccagctacttccactgcgacgtgaccagc 250
Query: 61 gaggacgacgtcgcggccgcggtggaccacgccgtggcgacgttcggcgcgctggacatc 120
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 251 gaggacgacgtcgctgccgcggtggaccacgccgtggcgacgttcggagcgctggatatc 310
Query: 121 atgttcaacaacgcgggcgtcagcgggccggcgtgctacagcgtccggg 169
||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 311 atgttcaacaatgctggcgtcagcgggccggcgtgctacagcgtccggg 359
>gb|CW499023.1|CW499023 fsbb001f293j08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f293j08, DNA
sequence
Length = 616
Score = 210 bits (106), Expect = 2e-052
Identities = 468/588 (79%), Gaps = 3/588 (0%)
Strand = Plus / Minus
Query: 30 cgccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggacca 89
|||||| ||||| || |||||||||||| ||| |||||||||||| || ||||||||
Sbjct: 614 cgccagatacgtgcagtgcgacgtcaccgtagagtccgacgtcgcggcggccgtggacca 555
Query: 90 cgccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggcc 149
| ||| ||| ||||||||||||||||||||||||||||| ||||||| || ||| |
Sbjct: 554 ctccgaggcccggttcggcgcgctggacatcatgttcaacaccgcgggcatcggcgacgc 495
Query: 150 ggcgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtgaa 209
| | ||| ||||| ||||||||||| ||||| ||||||||||||||| | |||| ||
Sbjct: 494 gtcttgccacagcatccgggagagcaccaaggaggacttcgagcgcgtgatctccgtcaa 435
Query: 210 tctggtgggcccgttcctcggcaccaagcacgcggcgcgggtgatggtgccctcgcgccg 269
|| ||||| |||||| | ||||||||||||||||||||||| ||||| ||| || ||||
Sbjct: 434 cctcgtgggaccgttcatgggcaccaagcacgcggcgcgggtcatggtccccgcgggccg 375
Query: 270 cggtggctgcatcatagggacgtcgagcgtggcggcggcagtgactggcgtgtcgtcgta 329
||| || |||||||| || ||||| ||| | || | || ||| | |||| ||||| |
Sbjct: 374 cggcggatgcatcatcggcacgtccagcctcgcctccgcggtggccggcgccgcgtcgca 315
Query: 330 cgcgtacgcgtgcgcgaagcgcgcgatggtgactctgacggagaacgcggctgcggagct 389
||| ||| ||||||| ||||||| | ||| | || ||||||||||| | ||||||||
Sbjct: 314 cgcctacacgtgcgccaagcgcggcctcgtggcgctcacggagaacgcctccgcggagct 255
Query: 390 cggccagcacggcattcgcgtgaactgcgtctcccccgcgggggtcgccacgccgctgac 449
|| | ||||| || || || ||||||||||| ||||| | || ||||||||||| |
Sbjct: 254 gggtcgccacgggatccgggtcaactgcgtctcgcccgccgcggctgccacgccgctcgc 195
Query: 450 catgaggtacatgggcctcgaggcggaggcgttggagcaggcaatggagggcatggccaa 509
|| | |||| |||| || |||| ||||||||| |||||||| ||||||| | | || ||
Sbjct: 194 cacggcgtacgtgggactggagggggaggcgttcgagcaggccatggaggccgtcgctaa 135
Query: 510 cctcaagggcgtgggcgcactgcgggtgcacgacgtcgccgccgccgtgcgcttcctggc 569
|||||||||||| || ||||||||| ||| ||||||||||||||| | | | ||
Sbjct: 134 cctcaagggcgttcgc---ctgcgggtggcggacatcgccgccgccgtgctgtacatcgc 78
Query: 570 cagcgatgacgcgaggtacatcagcggccacaacctgttcgtcgacgg 617
||| || |||||| ||||||||||||| ||||||||| || |||||||
Sbjct: 77 cagagacgacgcgcggtacatcagcgggcacaacctgctcctcgacgg 30
>gb|CW158106.1|CW158106 104_561_11147878_116_36390_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11147878, DNA
sequence
Length = 659
Score = 208 bits (105), Expect = 7e-052
Identities = 186/213 (87%)
Strand = Plus / Minus
Query: 30 cgccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggacca 89
|||||||||||| ||||||||||||||| ||||| |||||||||||| || ||||||||
Sbjct: 213 cgccagctacgtgcactgcgacgtcaccgtcgaggccgacgtcgcggcggccgtggacca 154
Query: 90 cgccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggcgtcagcgggcc 149
||||||||| ||||||||||||||||||||||||||||||||||||| || |||| |
Sbjct: 153 cgccgtggcccggttcggcgcgctggacatcatgttcaacaacgcgggcatcggcggcgc 94
Query: 150 ggcgtgctacagcgtccgggagagcggcaaggctgacttcgagcgcgtgctggccgtgaa 209
||| ||| ||||| ||||||||||| ||||| ||||||||||||||||| |||| ||
Sbjct: 93 ggcttgccacagcatccgggagagcaccaaggaggacttcgagcgcgtgctctccgtcaa 34
Query: 210 tctggtgggcccgttcctcggcaccaagcacgc 242
|| ||||| |||||||| ||||||||||||||
Sbjct: 33 cctcgtgggaccgttcctgggcaccaagcacgc 1
>gb|CW158107.1|CW158107 104_561_11147878_148_36389_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11147878, DNA
sequence
Length = 694
Score = 145 bits (73), Expect = 9e-033
Identities = 100/109 (91%)
Strand = Plus / Plus
Query: 30 cgccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggacca 89
|||||||||||| ||||||||||||||| ||||| |||||||||||| || ||||||||
Sbjct: 576 cgccagctacgtgcactgcgacgtcaccgtcgaggccgacgtcgcggcggccgtggacca 635
Query: 90 cgccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcgggc 138
||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 636 cgccgtggcccggttcggcgcgctggacatcatgttcaacaacgcgggc 684
>gb|BG054340.1|BG054340 OV2_3_A08.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 397
Score = 135 bits (68), Expect = 8e-030
Identities = 98/108 (90%)
Strand = Plus / Plus
Query: 30 cgccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggacca 89
|||||||||||| ||||||||||||||| ||||| |||||||||||| || ||||||||
Sbjct: 290 cgccagctacgtgcactgcgacgtcaccgtcgaggccgacgtcgcggcggccgtggacca 349
Query: 90 cgccgtggcgacgttcggcgcgctggacatcatgttcaacaacgcggg 137
||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 350 cgccgtggcccgggtcggcgcgctggacatcatgttcaacaacgcggg 397
>gb|CW499024.1|CW499024 fsbb001f293j08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f293j08, DNA
sequence
Length = 618
Score = 125 bits (63), Expect = 8e-027
Identities = 90/99 (90%)
Strand = Plus / Plus
Query: 30 cgccagctacgtccactgcgacgtcaccagcgaggacgacgtcgcggccgcggtggacca 89
|||||||||||| ||||||||||||||| || ||| |||||||||||| || ||||||||
Sbjct: 520 cgccagctacgtgcactgcgacgtcaccggcaaggccgacgtcgcggcggccgtggacca 579
Query: 90 cgccgtggcgacgttcggcgcgctggacatcatgttcaa 128
||||||||| |||||||||||||||||||||||||||
Sbjct: 580 cgccgtggcccggttcggcgcgctggacatcatgttcaa 618
>gb|BG054069.1|BG054069 OV2_3_A08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 415
Score = 111 bits (56), Expect = 1e-022
Identities = 169/206 (82%), Gaps = 3/206 (1%)
Strand = Plus / Plus
Query: 412 aactgcgtctcccccgcgggggtcgccacgccgctgaccatgaggtacatgggcctcgag 471
||||||||||| ||||| | || ||||||||||| ||| | |||| |||| || |||
Sbjct: 28 aactgcgtctcgcccgccgcggctgccacgccgctcgccacggcgtacgtgggactggag 87
Query: 472 gcggaggcgttggagcaggcaatggagggcatggccaacctcaagggcgtgggcgcactg 531
| ||||||||| |||||||| ||||||| | | || |||||||||||||| || |||
Sbjct: 88 ggggaggcgttcgagcaggccatggaggccgtcgctaacctcaagggcgttcgc---ctg 144
Query: 532 cgggtgcacgacgtcgccgccgccgtgcgcttcctggccagcgatgacgcgaggtacatc 591
|||||| ||| ||||||||||||||| || ||| |||||||| |||||| ||||||||
Sbjct: 145 cgggtggcggacatcgccgccgccgtgctctacctcgccagcgacgacgcgcggtacatc 204
Query: 592 agcggccacaacctgttcgtcgacgg 617
||||| ||||||||| || |||||||
Sbjct: 205 agcgggcacaacctgctcctcgacgg 230
>gb|BE917665.1|BE917665 OV1_6_F01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 404
Score = 103 bits (52), Expect = 3e-020
Identities = 150/182 (82%), Gaps = 3/182 (1%)
Strand = Plus / Plus
Query: 436 gccacgccgctgaccatgaggtacatgggcctcgaggcggaggcgttggagcaggcaatg 495
||||||||||| ||| | |||| |||| || |||| ||||||||| |||||||| |||
Sbjct: 19 gccacgccgctcgccacggcgtacgtgggactggagggggaggcgttcgagcaggccatg 78
Query: 496 gagggcatggccaacctcaagggcgtgggcgcactgcgggtgcacgacgtcgccgccgcc 555
|||| | | || |||||||||||||| || ||||||||| ||| |||||||||||
Sbjct: 79 gaggccgtcgctaacctcaagggcgttcgc---ctgcgggtggcggacatcgccgccgcc 135
Query: 556 gtgcgcttcctggccagcgatgacgcgaggtacatcagcggccacaacctgttcgtcgac 615
|||| || ||| |||||||| |||||| ||||||||||||| ||||||||| || |||||
Sbjct: 136 gtgctctacctcgccagcgacgacgcgcggtacatcagcgggcacaacctgctcctcgac 195
Query: 616 gg 617
||
Sbjct: 196 gg 197
>gb|BE917743.1|BE917743 OV1_6_F01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 475
Score = 103 bits (52), Expect = 3e-020
Identities = 150/182 (82%), Gaps = 3/182 (1%)
Strand = Plus / Plus
Query: 436 gccacgccgctgaccatgaggtacatgggcctcgaggcggaggcgttggagcaggcaatg 495
||||||||||| ||| | |||| |||| || |||| ||||||||| |||||||| |||
Sbjct: 19 gccacgccgctcgccacggcgtacgtgggactggagggggaggcgttcgagcaggccatg 78
Query: 496 gagggcatggccaacctcaagggcgtgggcgcactgcgggtgcacgacgtcgccgccgcc 555
|||| | | || |||||||||||||| || ||||||||| ||| |||||||||||
Sbjct: 79 gaggccgtcgctaacctcaagggcgttcgc---ctgcgggtggcggacatcgccgccgcc 135
Query: 556 gtgcgcttcctggccagcgatgacgcgaggtacatcagcggccacaacctgttcgtcgac 615
|||| || ||| |||||||| |||||| ||||||||||||| ||||||||| || |||||
Sbjct: 136 gtgctctacctcgccagcgacgacgcgcggtacatcagcgggcacaacctgctcctcgac 195
Query: 616 gg 617
||
Sbjct: 196 gg 197
>gb|BI141306.1|BI141306 IP1_54_B04.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 272
Score = 79.8 bits (40), Expect = 4e-013
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 818 cggctttgtaaggtccgcccgtcgcccttcggttttctaaactaaaaataaatgtacctc 877
|||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 77 cggctttgtaagctccgcccgttacccttcaattttctaaactaaaaataaatgtacctc 136
>gb|CW313125.1|CW313125 104_803_11471123_148_35790_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11471123, DNA
sequence
Length = 682
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 585 gtacatcagcggccacaacctgttcgtcgacggcggg 621
|||| ||| ||||||||||||| ||||||||||||||
Sbjct: 324 gtacgtcaacggccacaacctgctcgtcgacggcggg 360
>gb|CW338135.1|CW338135 104_838_11484582_116_36125_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11484582, DNA
sequence
Length = 727
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 585 gtacatcagcggccacaacctgttcgtcgacggcggg 621
|||| ||| ||||||||||||| ||||||||||||||
Sbjct: 123 gtacgtcaacggccacaacctgctcgtcgacggcggg 87
>gb|BG241362.1|BG241362 RHIZ2_51_B01.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 452
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 585 gtacatcagcggccacaacctgttcgtcgacggcggg 621
|||| ||| ||||||||||||| ||||||||||||||
Sbjct: 289 gtacgtcaacggccacaacctgctcgtcgacggcggg 325
>gb|BG465984.1|BG465984 RHIZ2_47_B01.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 282
Score = 50.1 bits (25), Expect = 4e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 585 gtacatcagcggccacaacctgttcgtcgacggcggg 621
|||| ||| ||||||||||||||| ||||||||||||
Sbjct: 90 gtacgtcaacggccacaacctgtttgtcgacggcggg 126
>gb|CW260769.1|CW260769 104_727_11229143_116_35195_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229143, DNA
sequence
Length = 597
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 35 gctacgtccactgcgacgtcacc 57
|||||||||||||||||||||||
Sbjct: 194 gctacgtccactgcgacgtcacc 216
>gb|AW923985.1|AW923985 WS1_32_F10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 488
Score = 46.1 bits (23), Expect = 0.006
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 102 gttcggcgcgctggacatcatgttcaacaacgcgggcgt 140
|||||||||||||||| | ||| | ||||||||||||||
Sbjct: 366 gttcggcgcgctggacgtgatggtgaacaacgcgggcgt 404
>gb|BE592617.1|BE592617 WS1_95_H02.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 547
Score = 46.1 bits (23), Expect = 0.006
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 102 gttcggcgcgctggacatcatgttcaacaacgcgggcgt 140
|||||||||||||||| | ||| | ||||||||||||||
Sbjct: 367 gttcggcgcgctggacgtgatggtgaacaacgcgggcgt 405
>gb|CW303507.1|CW303507 104_788_11465276_148_35698_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465276, DNA
sequence
Length = 563
Score = 44.1 bits (22), Expect = 0.024
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 102 gttcggcgcgctggacatcatgttcaacaacgcgggcg 139
|||||||||||||||| | ||| | |||||||||||||
Sbjct: 526 gttcggcgcgctggacgtgatggtgaacaacgcgggcg 563
>gb|CW045261.1|CW045261 104_281_10509453_114_30236 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509453, DNA
sequence
Length = 505
Score = 42.1 bits (21), Expect = 0.093
Identities = 60/73 (82%)
Strand = Plus / Minus
Query: 371 agaacgcggctgcggagctcggccagcacggcattcgcgtgaactgcgtctcccccgcgg 430
||||||||||| ||||||||| ||||||||| ||||| |||||||| || ||| |
Sbjct: 458 agaacgcggcttgcgagctcggcgcgcacggcatccgcgtcaactgcgtgtcgcccttcg 399
Query: 431 gggtcgccacgcc 443
| |||||||||||
Sbjct: 398 gcgtcgccacgcc 386
>gb|BE367622.1|BE367622 PI1_9_A01.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 238
Score = 42.1 bits (21), Expect = 0.093
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 585 gtacatcagcggccacaacctgttcgtcgacggcggg 621
|||| ||| ||| ||||||||| ||||||||||||||
Sbjct: 112 gtacgtcaacggacacaacctggtcgtcgacggcggg 148
>gb|BG558119.1|BG558119 RHIZ2_67_A12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 348
Score = 42.1 bits (21), Expect = 0.093
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 585 gtacatcagcggccacaacctgttcgtcgacggcggg 621
|||| ||| ||||||||||||| | ||||||||||||
Sbjct: 189 gtacgtcaacggccacaacctgcttgtcgacggcggg 225
>gb|CW092958.1|CW092958 104_455_10999481_116_33051_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10999481, DNA
sequence
Length = 327
Score = 40.1 bits (20), Expect = 0.37
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 564 cctggccagcgatgacgcgaggtacatcagcg 595
|||||||||||| || ||||||||| ||||||
Sbjct: 263 cctggccagcgacgaggcgaggtacgtcagcg 232
>gb|CW199664.1|CW199664 104_624_11183633_116_37058_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183633, DNA
sequence
Length = 504
Score = 40.1 bits (20), Expect = 0.37
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 397 cacggcattcgcgtgaactgcgtctcccccgcgggggtcgccacgccgctga 448
|||||| | ||||| |||||||| ||||||| || ||||||||||| ||||
Sbjct: 415 cacggcgtgcgcgtcaactgcgtgtcccccggcggcgtcgccacgcccctga 466
Score = 40.1 bits (20), Expect = 0.37
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 235 aagcacgcggcgcgggtgatggtg 258
|||||||||||||||| |||||||
Sbjct: 244 aagcacgcggcgcgggcgatggtg 267
>gb|CW199665.1|CW199665 104_624_11183633_148_36850_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183633, DNA
sequence
Length = 712
Score = 40.1 bits (20), Expect = 0.37
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 235 aagcacgcggcgcgggtgatggtg 258
|||||||||||||||| |||||||
Sbjct: 476 aagcacgcggcgcgggcgatggtg 453
Score = 40.1 bits (20), Expect = 0.37
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 397 cacggcattcgcgtgaactgcgtctcccccgcgggggtcgccacgccgctga 448
|||||| | ||||| |||||||| ||||||| || ||||||||||| ||||
Sbjct: 305 cacggcgtgcgcgtcaactgcgtgtcccccggcggcgtcgccacgcccctga 254
>gb|CW241893.1|CW241893 104_701_11219026_148_37557_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219026, DNA
sequence
Length = 649
Score = 40.1 bits (20), Expect = 0.37
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 564 cctggccagcgatgacgcgaggtacatcagcg 595
|||||||||||| || ||||||||| ||||||
Sbjct: 497 cctggccagcgacgaggcgaggtacgtcagcg 466
>gb|CW303506.1|CW303506 104_788_11465276_116_35694_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465276, DNA
sequence
Length = 571
Score = 40.1 bits (20), Expect = 0.37
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 564 cctggccagcgatgacgcgaggtacatcagcg 595
|||||||||||| || ||||||||| ||||||
Sbjct: 416 cctggccagcgacgaggcgaggtacgtcagcg 385
>gb|CW325782.1|CW325782 104_820_11477874_116_35926_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477874, DNA
sequence
Length = 613
Score = 40.1 bits (20), Expect = 0.37
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 234 caagcacgcggcgcgggtgatggtgccc 261
||||||||||||||| || |||||||||
Sbjct: 426 caagcacgcggcgcgcgtcatggtgccc 399
>gb|CW325783.1|CW325783 104_820_11477874_148_35927_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477874, DNA
sequence
Length = 630
Score = 40.1 bits (20), Expect = 0.37
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 234 caagcacgcggcgcgggtgatggtgccc 261
||||||||||||||| || |||||||||
Sbjct: 473 caagcacgcggcgcgcgtcatggtgccc 500
>gb|CW326303.1|CW326303 104_821_11478147_148_36063_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478147, DNA
sequence
Length = 627
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 537 gcacgacgtcgccgccgccg 556
||||||||||||||||||||
Sbjct: 179 gcacgacgtcgccgccgccg 160
>gb|CW360143.1|CW360143 fsbb001f028b16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f028b16, DNA
sequence
Length = 626
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 537 gcacgacgtcgccgccgccg 556
||||||||||||||||||||
Sbjct: 366 gcacgacgtcgccgccgccg 385
>gb|CW457734.1|CW457734 fsbb001f203k22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f203k22, DNA
sequence
Length = 502
Score = 40.1 bits (20), Expect = 0.37
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 564 cctggccagcgatgacgcgaggtacatcagcg 595
|||||||||||| || ||||||||| ||||||
Sbjct: 255 cctggccagcgacgaggcgaggtacgtcagcg 224
>gb|AW679848.1|AW679848 WS1_32_F10.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 582
Score = 40.1 bits (20), Expect = 0.37
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 564 cctggccagcgatgacgcgaggtacatcagcg 595
|||||||||||| || ||||||||| ||||||
Sbjct: 269 cctggccagcgacgaggcgaggtacgtcagcg 300
>gb|BE592747.1|BE592747 WS1_95_H02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 268
Score = 40.1 bits (20), Expect = 0.37
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 564 cctggccagcgatgacgcgaggtacatcagcg 595
|||||||||||| || ||||||||| ||||||
Sbjct: 117 cctggccagcgacgaggcgaggtacgtcagcg 148
>gb|BG357669.1|BG357669 OV2_32_G10.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 660
Score = 40.1 bits (20), Expect = 0.37
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 564 cctggccagcgatgacgcgaggtacatcagcg 595
|||||||||||| || ||||||||| ||||||
Sbjct: 455 cctggccagcgacgaggcgaggtacgtcagcg 486
>gb|CD224131.1|CD224131 CCC1_32_B09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_32_B09_A007 3', mRNA sequence
Length = 681
Score = 40.1 bits (20), Expect = 0.37
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 397 cacggcattcgcgtgaactgcgtctcccccgcgggggtcgccacgccgctga 448
|||||| | ||||| |||||||| ||||||| || ||||||||||| ||||
Sbjct: 269 cacggcgtgcgcgtcaactgcgtgtcccccggcggcgtcgccacgcccctga 320
Score = 40.1 bits (20), Expect = 0.37
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 235 aagcacgcggcgcgggtgatggtg 258
|||||||||||||||| |||||||
Sbjct: 98 aagcacgcggcgcgggcgatggtg 121
>gb|CD224241.1|CD224241 CCC1_32_B09.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_32_B09_A007 5', mRNA sequence
Length = 460
Score = 40.1 bits (20), Expect = 0.37
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 235 aagcacgcggcgcgggtgatggtg 258
|||||||||||||||| |||||||
Sbjct: 408 aagcacgcggcgcgggcgatggtg 431
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 362,142
Number of Sequences: 832831
Number of extensions: 362142
Number of successful extensions: 101502
Number of sequences better than 0.5: 41
Number of HSP's better than 0.5 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101394
Number of HSP's gapped (non-prelim): 100
length of query: 958
length of database: 491,359,669
effective HSP length: 20
effective length of query: 938
effective length of database: 474,703,049
effective search space: 445271459962
effective search space used: 445271459962
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)