BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404820.2.1
(830 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG464515.1|BG464515 EM1_70_F11.g1_A002 Embryo 1 (EM1) So... 496 e-138
gb|CW021618.1|CW021618 104_160_10431366_1_30004 Sorghum met... 333 2e-089
gb|CW414650.1|CW414650 fsbb001f114g15f0 Sorghum methylation... 333 2e-089
gb|CW414651.1|CW414651 fsbb001f114g15k0 Sorghum methylation... 268 8e-070
gb|BZ780368.1|BZ780368 ii39c04.g1 WGS-SbicolorF (DH5a methy... 159 5e-037
gb|CW232048.1|CW232048 104_681_11211451_148_37351_072 Sorgh... 113 3e-023
gb|BF656257.1|BF656257 FM1_44_A08.g1_A003 Floral-Induced Me... 107 2e-021
gb|CW021619.1|CW021619 104_160_10431366_5_30005 Sorghum met... 64 2e-008
gb|CL175625.1|CL175625 104_381_10892573_148_31764_173 Sorgh... 58 1e-006
gb|CW148277.1|CW148277 104_542_11140330_148_35005_033 Sorgh... 58 1e-006
gb|CW190177.1|CW190177 104_611_11174363_148_36746_036 Sorgh... 58 1e-006
gb|CW311756.1|CW311756 104_801_11470397_116_36281_025 Sorgh... 58 1e-006
gb|BM328497.1|BM328497 PIC1_29_H10.g1_A002 Pathogen-infecte... 58 1e-006
gb|BM329477.1|BM329477 PIC1_38_E07.g1_A002 Pathogen-infecte... 58 1e-006
gb|CD425420.1|CD425420 SA1_12_E03.b1_A002 Salicylic acid-tr... 58 1e-006
gb|CF073421.1|CF073421 FE1_10_A03.b1_A002 Iron-deficient se... 58 1e-006
gb|CN137452.1|CN137452 OX1_57_H05.b1_A002 Oxidatively-stres... 58 1e-006
gb|CF070793.1|CF070793 FE1_4_B07.g1_A002 Iron-deficient see... 42 0.080
gb|CL150354.1|CL150354 104_332_10778471_114_31357_023 Sorgh... 40 0.32
gb|CW299977.1|CW299977 104_783_11463402_116_36252_077 Sorgh... 40 0.32
gb|BE918255.1|BE918255 OV1_1_A10.g1_A002 Ovary 1 (OV1) Sorg... 40 0.32
gb|BE918364.1|BE918364 OV1_2_G01.g1_A002 Ovary 1 (OV1) Sorg... 40 0.32
gb|BE918448.1|BE918448 OV1_3_H04.g1_A002 Ovary 1 (OV1) Sorg... 40 0.32
gb|BE918460.1|BE918460 OV1_4_B02.g1_A002 Ovary 1 (OV1) Sorg... 40 0.32
gb|BF656415.1|BF656415 FM1_45_E11.g2_A003 Floral-Induced Me... 40 0.32
gb|BG054070.1|BG054070 OV2_3_A09.g1_A002 Ovary 2 (OV2) Sorg... 40 0.32
gb|BM330076.1|BM330076 PIC1_46_H07.g1_A002 Pathogen-infecte... 40 0.32
gb|CF758905.1|CF758905 DSAF1_38_A02.g1_A011 Drought-stresse... 40 0.32
gb|CF758940.1|CF758940 DSAF1_38_D04.g1_A011 Drought-stresse... 40 0.32
gb|CF771524.1|CF771524 DSBF1_20_E12.g1_A010 Drought-stresse... 40 0.32
>gb|BG464515.1|BG464515 EM1_70_F11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 423
Score = 496 bits (250), Expect = e-138
Identities = 283/294 (96%)
Strand = Plus / Minus
Query: 104 atcggctactcactccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacg 163
|||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||
Sbjct: 294 atcggctactcactccttgttccgtgcagccctgtcttttttgtgtccacctaggatacg 235
Query: 164 agaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaactccga 223
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 234 agaaatctgcagacctctactgaaggcctggttgaatagcatccttgtctggaactccga 175
Query: 224 aacaaacgggaaccaagcgaggaatgcgatcggggtgaacaacagcaagcccatgatgat 283
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 174 aacaaacgggaaccaagctaggaatgcgatcggggtgaacagcagcaagcccatgatgat 115
Query: 284 ctcatagcctcgggcaagcgccttgaccgatccccatagccccatatgtgaaatagctga 343
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 114 ctcatagcctcgggcaagcgctttgaccgatccccatagccccatatgtgaaatagctga 55
Query: 344 cctcatagtttgtgctatcagaagcaaaccccatccagttggcatgaacgcaag 397
||||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct: 54 cctcatagtttgtgctatcagaagcaaaccccacccactcggcatgaacgcaag 1
>gb|CW021618.1|CW021618 104_160_10431366_1_30004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431366, DNA
sequence
Length = 343
Score = 333 bits (168), Expect = 2e-089
Identities = 183/188 (97%)
Strand = Plus / Minus
Query: 362 cagaagcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaac 421
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cagaagcaaaccccacccagtcggcatgaacgcaaggatgcaaacaaagatgtcctgaac 224
Query: 422 tgtcatgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcag 481
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 223 tgtcatgtgtgggattgctatcaatattatgataatagagataaacgttatgaatatcag 164
Query: 482 ccccttgatcagccggaacacaagctggaactctgcactgaatttcctcctgccaactga 541
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 acccttgatcaaccggaacacaagctggaactctgcactgaatttcctcctgccaactga 104
Query: 542 tacagtct 549
||||||||
Sbjct: 103 tacagtct 96
>gb|CW414650.1|CW414650 fsbb001f114g15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f114g15, DNA
sequence
Length = 727
Score = 333 bits (168), Expect = 2e-089
Identities = 183/188 (97%)
Strand = Plus / Plus
Query: 362 cagaagcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaac 421
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 137 cagaagcaaaccccacccagtcggcatgaacgcaaggatgcaaacaaagatgtcctgaac 196
Query: 422 tgtcatgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcag 481
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 197 tgtcatgtgtgggattgctatcaatattatgataatagagataaacgttatgaatatcag 256
Query: 482 ccccttgatcagccggaacacaagctggaactctgcactgaatttcctcctgccaactga 541
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 acccttgatcaaccggaacacaagctggaactctgcactgaatttcctcctgccaactga 316
Query: 542 tacagtct 549
||||||||
Sbjct: 317 tacagtct 324
Score = 81.8 bits (41), Expect = 9e-014
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 322 gccccatatgtgaaatagctgacctcatagtttgtgctatc 362
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 gccccatatgtgaaatagctgacctcatagtttgtgctatc 57
>gb|CW414651.1|CW414651 fsbb001f114g15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f114g15, DNA
sequence
Length = 636
Score = 268 bits (135), Expect = 8e-070
Identities = 157/166 (94%)
Strand = Plus / Minus
Query: 597 accagaacgctcttcgtgtgagtggtgatgttcaaatgataaacaagaccatactggtaa 656
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 accagaacgctctttgtgtgagtggtgatgttcaaatgataaacaagaccatactggtag 529
Query: 657 ataaagaagcgcaacgaaagcactatttcaagaacagtgccacgctttccagaatgccta 716
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ataaagaagcgcaatgcaagcactatttcaagaacagtgccacgctttccagaatgccta 469
Query: 717 agannctcctgctctttttcccaccatgactnncancttttctctg 762
||| |||||||||||||||||||||||||| || ||||||||||
Sbjct: 468 agaggctcctgctctttttcccaccatgactcccaacttttctctg 423
>gb|BZ780368.1|BZ780368 ii39c04.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii39c04, DNA sequence
Length = 589
Score = 159 bits (80), Expect = 5e-037
Identities = 158/184 (85%)
Strand = Plus / Minus
Query: 366 agcaaaccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctgaactgtc 425
||||||||||||||||| |||||||| |||||||||||||||||||||||| |||| |||
Sbjct: 462 agcaaaccccatccagtgggcatgaaagcaaggatgcaaacaaagatgtccagaaccgtc 403
Query: 426 atgtgtgggattgctatcaagattatgataatagagataaacgttatgaatatcagcccc 485
||| ||||||||||| ||||||| | || | |||| ||||| ||||| || |||
Sbjct: 402 atgccagggattgctattaagattaccacgatggctgtaaaagttataaatatgagaccc 343
Query: 486 ttgatcagccggaacacaagctggaactctgcactgaatttcctcctgccaactgataca 545
||||||| ||||||||| |||||||||||||||||||| |||||||||| ||||||||
Sbjct: 342 ttgatcaaccggaacacgagctggaactctgcactgaacctcctcctgcccactgatacg 283
Query: 546 gtct 549
||||
Sbjct: 282 gtct 279
>gb|CW232048.1|CW232048 104_681_11211451_148_37351_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11211451, DNA
sequence
Length = 580
Score = 113 bits (57), Expect = 3e-023
Identities = 114/133 (85%)
Strand = Plus / Minus
Query: 115 actccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgca 174
||||||||||||| | | |||||||||||||| || || |||||||| || |||||||
Sbjct: 143 actccttgttccgggtccctcggtctttcttgtggcctccgaggatacgggagatctgca 84
Query: 175 gacctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacggga 234
||||||| |||||||||||||||||||||||||| | |||||| || || || |||||||
Sbjct: 83 gacctctgctgaaggcctggttgaacagcatcctggtctggaattcggacacgaacggga 24
Query: 235 accaagcgaggaa 247
|||| || |||||
Sbjct: 23 accaggcaaggaa 11
>gb|BF656257.1|BF656257 FM1_44_A08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 397
Score = 107 bits (54), Expect = 2e-021
Identities = 126/150 (84%)
Strand = Plus / Minus
Query: 115 actccttgttccgtgcagcccggtctttcttgtgtccgcctaggatacgagaaatctgca 174
||||||||||||| | | |||||||||||| | || || |||||||| || |||||||
Sbjct: 169 actccttgttccgggatcctcggtctttcttgcggcctccgaggatacgggagatctgca 110
Query: 175 gacctctactgaaggcctggttgaacagcatccttggctggaactccgaaacaaacggga 234
||||||| |||||||||||||||||||||||||| | |||||| || || || |||||||
Sbjct: 109 gacctctgctgaaggcctggttgaacagcatcctggtctggaattcggacaccaacggga 50
Query: 235 accaagcgaggaatgcgatcggggtgaaca 264
|||| || ||||| || || || |||||||
Sbjct: 49 accaggcaaggaaggcaatgggcgtgaaca 20
>gb|CW021619.1|CW021619 104_160_10431366_5_30005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431366, DNA
sequence
Length = 602
Score = 63.9 bits (32), Expect = 2e-008
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 104 atcggctactcactccttgttccgtgcagccc 135
||||||||||||||||||||||||||||||||
Sbjct: 570 atcggctactcactccttgttccgtgcagccc 601
Score = 42.1 bits (21), Expect = 0.080
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 74 tgtaggtcagcactaccaggc 94
|||||||||||||||||||||
Sbjct: 319 tgtaggtcagcactaccaggc 339
Score = 40.1 bits (20), Expect = 0.32
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 27 aataaccagtacaagtataatgccacgtgggg 58
|||||||| ||| | |||||||||||||||||
Sbjct: 271 aataaccaatactactataatgccacgtgggg 302
>gb|CL175625.1|CL175625 104_381_10892573_148_31764_173 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892573, DNA
sequence
Length = 745
Score = 58.0 bits (29), Expect = 1e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 162 cgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaactcc 221
|||||||| ||||| ||||||||||| || || || |||||||||| | |||||||||
Sbjct: 538 cgagaaatttgcagtcctctactgaacgcttgattaaacagcatccgcgtctggaactcg 479
Query: 222 gaaacaaacgggaacca 238
|| ||||| ||||||||
Sbjct: 478 gacacaaaggggaacca 462
Score = 40.1 bits (20), Expect = 0.32
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 485 cttgatcagccggaacacaagctggaactctgcactgaat 524
||||||||| ||||| | |||||||| ||||||||||||
Sbjct: 109 cttgatcagacggaagaatagctggaaatctgcactgaat 70
>gb|CW148277.1|CW148277 104_542_11140330_148_35005_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11140330, DNA
sequence
Length = 721
Score = 58.0 bits (29), Expect = 1e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 162 cgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaactcc 221
|||||||| ||||| ||||||||||| || || || |||||||||| | |||||||||
Sbjct: 329 cgagaaatttgcagtcctctactgaacgcttgattaaacagcatccgcgtctggaactcg 270
Query: 222 gaaacaaacgggaacca 238
|| ||||| ||||||||
Sbjct: 269 gacacaaaggggaacca 253
>gb|CW190177.1|CW190177 104_611_11174363_148_36746_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174363, DNA
sequence
Length = 703
Score = 58.0 bits (29), Expect = 1e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 162 cgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaactcc 221
|||||||| ||||| ||||||||||| || || || |||||||||| | |||||||||
Sbjct: 620 cgagaaatttgcagtcctctactgaacgcttgattaaacagcatccgcgtctggaactcg 561
Query: 222 gaaacaaacgggaacca 238
|| ||||| ||||||||
Sbjct: 560 gacacaaaggggaacca 544
Score = 40.1 bits (20), Expect = 0.32
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 485 cttgatcagccggaacacaagctggaactctgcactgaat 524
||||||||| ||||| | |||||||| ||||||||||||
Sbjct: 191 cttgatcagacggaagaatagctggaaatctgcactgaat 152
>gb|CW311756.1|CW311756 104_801_11470397_116_36281_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470397, DNA
sequence
Length = 730
Score = 58.0 bits (29), Expect = 1e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 162 cgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaactcc 221
|||||||| ||||| ||||||||||| || || || |||||||||| | |||||||||
Sbjct: 269 cgagaaatttgcagtcctctactgaacgcttgattaaacagcatccgcgtctggaactcg 210
Query: 222 gaaacaaacgggaacca 238
|| ||||| ||||||||
Sbjct: 209 gacacaaaggggaacca 193
>gb|BM328497.1|BM328497 PIC1_29_H10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 437
Score = 58.0 bits (29), Expect = 1e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 162 cgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaactcc 221
|||||||| ||||| ||||||||||| || || || |||||||||| | |||||||||
Sbjct: 173 cgagaaatttgcagtcctctactgaacgcttgattaaacagcatccgcgtctggaactcg 114
Query: 222 gaaacaaacgggaacca 238
|| ||||| ||||||||
Sbjct: 113 gacacaaaggggaacca 97
>gb|BM329477.1|BM329477 PIC1_38_E07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 511
Score = 58.0 bits (29), Expect = 1e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 162 cgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaactcc 221
|||||||| ||||| ||||||||||| || || || |||||||||| | |||||||||
Sbjct: 242 cgagaaatttgcagtcctctactgaacgcttgattaaacagcatccgcgtctggaactcg 183
Query: 222 gaaacaaacgggaacca 238
|| ||||| ||||||||
Sbjct: 182 gacacaaaggggaacca 166
>gb|CD425420.1|CD425420 SA1_12_E03.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_12_E03_A002 3', mRNA sequence
Length = 555
Score = 58.0 bits (29), Expect = 1e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 162 cgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaactcc 221
|||||||| ||||| ||||||||||| || || || |||||||||| | |||||||||
Sbjct: 316 cgagaaatttgcagtcctctactgaacgcttgattaaacagcatccgcgtctggaactcg 257
Query: 222 gaaacaaacgggaacca 238
|| ||||| ||||||||
Sbjct: 256 gacacaaaggggaacca 240
>gb|CF073421.1|CF073421 FE1_10_A03.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_10_A03_A002 3', mRNA sequence
Length = 417
Score = 58.0 bits (29), Expect = 1e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 162 cgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaactcc 221
|||||||| ||||| ||||||||||| || || || |||||||||| | |||||||||
Sbjct: 177 cgagaaatttgcagtcctctactgaacgcttgattaaacagcatccgcgtctggaactcg 118
Query: 222 gaaacaaacgggaacca 238
|| ||||| ||||||||
Sbjct: 117 gacacaaaggggaacca 101
>gb|CN137452.1|CN137452 OX1_57_H05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_H05_A002 3', mRNA sequence
Length = 732
Score = 58.0 bits (29), Expect = 1e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 162 cgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaactcc 221
|||||||| ||||| ||||||||||| || || || |||||||||| | |||||||||
Sbjct: 576 cgagaaatttgcagtcctctactgaacgcttgattaaacagcatccgcgtctggaactcg 517
Query: 222 gaaacaaacgggaacca 238
|| ||||| ||||||||
Sbjct: 516 gacacaaaggggaacca 500
Score = 40.1 bits (20), Expect = 0.32
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 485 cttgatcagccggaacacaagctggaactctgcactgaat 524
||||||||| ||||| | |||||||| ||||||||||||
Sbjct: 253 cttgatcagacggaagaatagctggaaatctgcactgaat 214
>gb|CF070793.1|CF070793 FE1_4_B07.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_4_B07_A002 5', mRNA sequence
Length = 585
Score = 42.1 bits (21), Expect = 0.080
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 74 tgtaggtcagcactaccaggc 94
|||||||||||||||||||||
Sbjct: 334 tgtaggtcagcactaccaggc 354
Score = 40.1 bits (20), Expect = 0.32
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 27 aataaccagtacaagtataatgccacgtgggg 58
|||||||| ||| | |||||||||||||||||
Sbjct: 286 aataaccaatactactataatgccacgtgggg 317
>gb|CL150354.1|CL150354 104_332_10778471_114_31357_023 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778471, DNA
sequence
Length = 534
Score = 40.1 bits (20), Expect = 0.32
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 485 cttgatcagccggaacacaagctggaactctgcactgaat 524
||||||||| ||||| | |||||||| ||||||||||||
Sbjct: 277 cttgatcagacggaagaatagctggaaatctgcactgaat 238
>gb|CW299977.1|CW299977 104_783_11463402_116_36252_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463402, DNA
sequence
Length = 563
Score = 40.1 bits (20), Expect = 0.32
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 163 gagaaatctgcagacctctactgaaggcctggttgaacag 202
|||| |||| || |||||| ||||| ||||||||||||||
Sbjct: 135 gagatatctccaaacctctgctgaacgcctggttgaacag 174
>gb|BE918255.1|BE918255 OV1_1_A10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 352
Score = 40.1 bits (20), Expect = 0.32
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 163 gagaaatctgcagacctctactgaaggcctggttgaacag 202
|||| |||| || |||||| ||||| ||||||||||||||
Sbjct: 289 gagatatctccaaacctctgctgaacgcctggttgaacag 250
>gb|BE918364.1|BE918364 OV1_2_G01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 651
Score = 40.1 bits (20), Expect = 0.32
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 163 gagaaatctgcagacctctactgaaggcctggttgaacag 202
|||| |||| || |||||| ||||| ||||||||||||||
Sbjct: 392 gagatatctccaaacctctgctgaacgcctggttgaacag 353
>gb|BE918448.1|BE918448 OV1_3_H04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 508
Score = 40.1 bits (20), Expect = 0.32
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 163 gagaaatctgcagacctctactgaaggcctggttgaacag 202
|||| |||| || |||||| ||||| ||||||||||||||
Sbjct: 235 gagatatctccaaacctctgctgaacgcctggttgaacag 196
>gb|BE918460.1|BE918460 OV1_4_B02.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 650
Score = 40.1 bits (20), Expect = 0.32
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 163 gagaaatctgcagacctctactgaaggcctggttgaacag 202
|||| |||| || |||||| ||||| ||||||||||||||
Sbjct: 380 gagatatctccaaacctctgctgaacgcctggttgaacag 341
>gb|BF656415.1|BF656415 FM1_45_E11.g2_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 601
Score = 40.1 bits (20), Expect = 0.32
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 163 gagaaatctgcagacctctactgaaggcctggttgaacag 202
|||| |||| || |||||| ||||| ||||||||||||||
Sbjct: 322 gagatatctccaaacctctgctgaacgcctggttgaacag 283
>gb|BG054070.1|BG054070 OV2_3_A09.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 590
Score = 40.1 bits (20), Expect = 0.32
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 163 gagaaatctgcagacctctactgaaggcctggttgaacag 202
|||| |||| || |||||| ||||| ||||||||||||||
Sbjct: 326 gagatatctccaaacctctgctgaacgcctggttgaacag 287
>gb|BM330076.1|BM330076 PIC1_46_H07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 612
Score = 40.1 bits (20), Expect = 0.32
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 163 gagaaatctgcagacctctactgaaggcctggttgaacag 202
|||| |||| || |||||| ||||| ||||||||||||||
Sbjct: 324 gagatatctccaaacctctgctgaacgcctggttgaacag 285
>gb|CF758905.1|CF758905 DSAF1_38_A02.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_38_A02_A011 3', mRNA sequence
Length = 344
Score = 40.1 bits (20), Expect = 0.32
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 163 gagaaatctgcagacctctactgaaggcctggttgaacag 202
|||| |||| || |||||| ||||| ||||||||||||||
Sbjct: 67 gagatatctccaaacctctgctgaacgcctggttgaacag 28
>gb|CF758940.1|CF758940 DSAF1_38_D04.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_38_D04_A011 3', mRNA sequence
Length = 345
Score = 40.1 bits (20), Expect = 0.32
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 163 gagaaatctgcagacctctactgaaggcctggttgaacag 202
|||| |||| || |||||| ||||| ||||||||||||||
Sbjct: 67 gagatatctccaaacctctgctgaacgcctggttgaacag 28
>gb|CF771524.1|CF771524 DSBF1_20_E12.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_20_E12_A010 3', mRNA sequence
Length = 634
Score = 40.1 bits (20), Expect = 0.32
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 163 gagaaatctgcagacctctactgaaggcctggttgaacag 202
|||| |||| || |||||| ||||| ||||||||||||||
Sbjct: 329 gagatatctccaaacctctgctgaacgcctggttgaacag 290
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 157,940
Number of Sequences: 832831
Number of extensions: 157940
Number of successful extensions: 40783
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40735
Number of HSP's gapped (non-prelim): 48
length of query: 830
length of database: 491,359,669
effective HSP length: 20
effective length of query: 810
effective length of database: 474,703,049
effective search space: 384509469690
effective search space used: 384509469690
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)