BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404801.2.3
(1028 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN134509.1|CN134509 OX1_26_F12.g1_A002 Oxidatively-stres... 975 0.0
gb|DN551908.1|DN551908 pSPR-RT-MR-H2_E02_C027 pSPR Sorghum ... 743 0.0
gb|CF482007.1|CF482007 POL1_76_B05.b1_A002 Pollen Sorghum b... 628 e-178
gb|BG649190.1|BG649190 EM1_77_G11.g1_A002 Embryo 1 (EM1) So... 593 e-167
gb|BG948185.1|BG948185 IP1_10_D07.g1_A002 Immature pannicle... 543 e-152
gb|BG412421.1|BG412421 OV2_33_H08.g1_A002 Ovary 2 (OV2) Sor... 525 e-147
gb|BF587888.1|BF587888 FM1_34_C12.g1_A003 Floral-Induced Me... 517 e-145
gb|BI245776.1|BI245776 IP1_64_C06.g1_A002 Immature pannicle... 509 e-142
gb|CN134426.1|CN134426 OX1_26_F12.b1_A002 Oxidatively-stres... 509 e-142
gb|BG605739.1|BG605739 RHIZ2_80_H09.g1_A003 Rhizome2 (RHIZ2... 504 e-141
gb|CF485232.1|CF485232 POL1_30_F05.b1_A002 Pollen Sorghum b... 494 e-138
gb|BG103497.1|BG103497 RHIZ2_37_C08.g1_A003 Rhizome2 (RHIZ2... 488 e-136
gb|BI140650.1|BI140650 IP1_52_A07.b1_A002 Immature pannicle... 488 e-136
gb|BF585842.1|BF585842 FM1_25_B08.g1_A003 Floral-Induced Me... 482 e-134
gb|BM328689.1|BM328689 PIC1_25_D06.g1_A002 Pathogen-infecte... 470 e-130
gb|BG241626.1|BG241626 RHIZ2_17_H06.g1_A003 Rhizome2 (RHIZ2... 462 e-128
gb|BG052653.1|BG052653 RHIZ2_27_F12.g1_A003 Rhizome2 (RHIZ2... 458 e-127
gb|BI351076.1|BI351076 IP1_69_E06.g1_A002 Immature pannicle... 440 e-121
gb|BF655915.1|BF655915 FM1_42_D11.g1_A003 Floral-Induced Me... 416 e-114
gb|BG355831.1|BG355831 EM1_17_C03.g1_A002 Embryo 1 (EM1) So... 412 e-113
gb|BF422058.1|BF422058 FM1_12_D07.g1_A003 Floral-Induced Me... 375 e-102
gb|BF586992.1|BF586992 FM1_32_A01.g1_A003 Floral-Induced Me... 339 3e-091
gb|DN551859.1|DN551859 pSPR-RT-MR-H1_C07_C263 pSPR Sorghum ... 335 5e-090
gb|BI074812.1|BI074812 IP1_16_G03.b1_A002 Immature pannicle... 327 1e-087
gb|BF656879.1|BF656879 OV2_22_B07.g1_A002 Ovary 2 (OV2) Sor... 280 2e-073
gb|BF176662.1|BF176662 EM1_1_E11.g1_A002 Embryo 1 (EM1) Sor... 250 2e-064
gb|CW234191.1|CW234191 104_687_11213849_148_37382_067 Sorgh... 246 3e-063
gb|CW253695.1|CW253695 104_717_11225238_116_35111_023 Sorgh... 246 3e-063
gb|CW253696.1|CW253696 104_717_11225238_148_35107_023 Sorgh... 246 3e-063
gb|CW443602.1|CW443602 fsbb001f163m16f0 Sorghum methylation... 246 3e-063
gb|CW452021.1|CW452021 fsbb001f192f20f0 Sorghum methylation... 246 3e-063
gb|BF421511.1|BF421511 FM1_8_F10.g1_A003 Floral-Induced Mer... 240 2e-061
gb|BI211863.1|BI211863 IP1_62_D02.g1_A002 Immature pannicle... 228 8e-058
gb|CD228133.1|CD228133 CCC1_6_E11.b1_A007 Callus culture/ce... 222 5e-056
gb|BI140331.1|BI140331 IP1_52_A07.g1_A002 Immature pannicle... 212 5e-053
gb|BG051562.1|BG051562 FM1_58_A07.g1_A003 Floral-Induced Me... 198 7e-049
gb|BM324187.1|BM324187 PIC1_25_D06.b1_A002 Pathogen-infecte... 194 1e-047
gb|BF481845.1|BF481845 FM1_22_B03.g1_A003 Floral-Induced Me... 192 4e-047
gb|BG050659.1|BG050659 FM1_71_B03.g1_A003 Floral-Induced Me... 192 4e-047
gb|BG557100.1|BG557100 EM1_42_F06.g1_A002 Embryo 1 (EM1) So... 192 4e-047
gb|BG102640.1|BG102640 RHIZ2_35_E02.g1_A003 Rhizome2 (RHIZ2... 188 7e-046
gb|CF758348.1|CF758348 DSAF1_30_F09.g1_A011 Drought-stresse... 188 7e-046
gb|BF421769.1|BF421769 FM1_16_D05.g1_A003 Floral-Induced Me... 186 3e-045
gb|CF485311.1|CF485311 POL1_30_F05.g1_A002 Pollen Sorghum b... 161 2e-037
gb|BE366757.1|BE366757 PI1_3_G03.g1_A002 Pathogen induced 1... 157 2e-036
gb|CW452022.1|CW452022 fsbb001f192f20k0 Sorghum methylation... 147 2e-033
gb|CD228245.1|CD228245 CCC1_6_E11.g1_A007 Callus culture/ce... 133 4e-029
gb|CL153692.1|CL153692 104_338_10780894_114_31369_142 Sorgh... 117 2e-024
gb|CL174610.1|CL174610 104_379_10891763_116_31769_131 Sorgh... 113 3e-023
gb|CW041427.1|CW041427 104_274_10506544_114_30470 Sorghum m... 113 3e-023
gb|CW083676.1|CW083676 104_426_10945316_114_32375_080 Sorgh... 113 3e-023
gb|CW168693.1|CW168693 104_578_11154280_148_36605_058 Sorgh... 113 3e-023
gb|CW280850.1|CW280850 104_756_11407852_116_35452_012 Sorgh... 111 1e-022
gb|CL153693.1|CL153693 104_338_10780894_116_31370_142 Sorgh... 107 2e-021
gb|BF656320.1|BF656320 FM1_49_A08.g1_A003 Floral-Induced Me... 107 2e-021
gb|BG412718.1|BG412718 OV2_33_H08.b1_A002 Ovary 2 (OV2) Sor... 105 8e-021
gb|CF757039.1|CF757039 DSAF1_12_H07.g1_A011 Drought-stresse... 103 3e-020
gb|BG465193.1|BG465193 EM1_73_A03.g1_A002 Embryo 1 (EM1) So... 94 3e-017
gb|CW041428.1|CW041428 104_274_10506544_116_30434 Sorghum m... 86 7e-015
gb|CW041429.1|CW041429 104_274_10506544_116_30484 Sorghum m... 86 7e-015
gb|CW083677.1|CW083677 104_426_10945316_116_32439_080 Sorgh... 86 7e-015
gb|BF421433.1|BF421433 FM1_8_F10.b1_A003 Floral-Induced Mer... 84 3e-014
gb|BG933280.1|BG933280 WS1_92_E05.g1_A002 Water-stressed 1 ... 76 7e-012
gb|BI351222.1|BI351222 IP1_71_E08.g1_A002 Immature pannicle... 70 4e-010
gb|CF772019.1|CF772019 DSBF1_28_A01.g9_A010 Drought-stresse... 70 4e-010
gb|BI099442.1|BI099442 IP1_42_B10.g1_A002 Immature pannicle... 66 7e-009
gb|BG049795.1|BG049795 FM1_65_F04.g1_A003 Floral-Induced Me... 62 1e-007
gb|BG051751.1|BG051751 FM1_60_H01.g1_A003 Floral-Induced Me... 62 1e-007
gb|CW288541.1|CW288541 104_767_11412007_148_35537_030 Sorgh... 60 4e-007
gb|CW234190.1|CW234190 104_687_11213849_116_37381_067 Sorgh... 54 3e-005
gb|CW272375.1|CW272375 104_744_11403400_148_36227_054 Sorgh... 52 1e-004
gb|CW039680.1|CW039680 104_272_10505636_114_30389 Sorghum m... 50 4e-004
gb|CW265715.1|CW265715 104_735_11232033_148_35267_045 Sorgh... 50 4e-004
gb|CW382183.1|CW382183 fsbb001f063p06k0 Sorghum methylation... 48 0.002
gb|CW455091.1|CW455091 fsbb001f199n06f0 Sorghum methylation... 48 0.002
gb|AI724751.1|AI724751 RHIZ1_26_F08.y2_A001 Rhizome1 (RHIZ1... 48 0.002
gb|BI074493.1|BI074493 IP1_16_G03.g1_A002 Immature pannicle... 48 0.002
gb|BZ336052.1|BZ336052 hz28d11.b1 WGS-SbicolorF (JM107 adap... 42 0.100
gb|CW066457.1|CW066457 104_313_10523697_114_30148 Sorghum m... 42 0.100
gb|CW222309.1|CW222309 104_657_11202307_148_37174_068 Sorgh... 42 0.100
gb|CW257089.1|CW257089 104_722_11227151_148_35148_090 Sorgh... 42 0.100
gb|CW288849.1|CW288849 104_767_11412169_148_35539_007 Sorgh... 42 0.100
gb|BG052557.1|BG052557 RHIZ2_26_G11.g1_A003 Rhizome2 (RHIZ2... 42 0.100
gb|CN143600.1|CN143600 WOUND1_17_F09.b1_A002 Wounded leaves... 42 0.100
gb|CW066458.1|CW066458 104_313_10523697_115_30147 Sorghum m... 40 0.39
gb|CW066459.1|CW066459 104_313_10523697_115_30149 Sorghum m... 40 0.39
gb|CW102127.1|CW102127 104_470_11011172_116_34417_076 Sorgh... 40 0.39
gb|CW140518.1|CW140518 104_531_11135826_116_34925_077 Sorgh... 40 0.39
gb|CW257088.1|CW257088 104_722_11227151_116_35152_090 Sorgh... 40 0.39
>gb|CN134509.1|CN134509 OX1_26_F12.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_F12_A002 5', mRNA sequence
Length = 723
Score = 975 bits (492), Expect = 0.0
Identities = 630/676 (93%)
Strand = Plus / Plus
Query: 3 tctcctggacattctgatgtaccgtctgttgctgctgttgttagttctcgtgaatggcct 62
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 48 tctcctggacattctgatgtaccgtccattgctgctgttgttagttctcgtgaatggcct 107
Query: 63 cttatctcgaaatacagagcatctgtccgcacccaatcaccaaaaatggaaatgattgac 122
|||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||||
Sbjct: 108 cttatctcgaaatatagagcttctgtccgcacccaatcacctaagatggaaatgattgac 167
Query: 123 tcattgtttaagccacgggaagctgaagatgatggtctgatccgggagtgtctgattgac 182
|| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 168 tctttgtttaagccacgggaaactgaagatgatagtctgatccgggagtgtctgattgac 227
Query: 183 ttctacaccagttctgggaagagaaagcctgaccaagttatcatattcagggacggtgtt 242
|||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||
Sbjct: 228 ttctacaccagttctgggaagaagaagcctgaccaagtcatcatcttcagggatggtgtt 287
Query: 243 agcgaaagtcagtttaatcaggtgctgaacattgagttgcaacaaatcatcgaggcttgc 302
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 agtgaaagtcagtttaatcaggtgctgaacattgagttgcaacaaatcatcgaggcttgc 347
Query: 303 aaatttcttgatgagaaatggaatcccaagttcacgttgattattgcccagaagaatcat 362
|| ||| | ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 348 aagtttttggatgaaaaatggaatccaaagttcacgttgattattgcccagaagaatcac 407
Query: 363 cacactaaatttttcattcctggaaagccagataatgtcccaccaggaactgtggtggac 422
|||||||||||||| |||||||||||| |||| ||||| ||| | |||||||| ||||||
Sbjct: 408 cacactaaattttttattcctggaaagacagaaaatgttccagctggaactgttgtggac 467
Query: 423 aacaaagtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatgatc 482
|||||||| || ||||||| |||||| || |||||||||||| | |||||||||||||||
Sbjct: 468 aacaaagtttgtcatccaaggaactttgacttctacatgtgttcacatgctggaatgatc 527
Query: 483 gggactacgaggccaactcactaccacatcctgcatgatgagataggcttcagtcctgat 542
|||||||||||||||||||| || || || |||||||||||||||||||||| |||||||
Sbjct: 528 gggactacgaggccaactcattatcatatactgcatgatgagataggcttcaatcctgat 587
Query: 543 gatctgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccata 602
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 588 gatctgcaggagctggtgcattcgctctcttacgtgtaccaaaggagcacaacagccata 647
Query: 603 tcagtcgttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcata 662
||||| ||||||||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct: 648 tcagttgttgctcccatctgctatgcacatctggcagcagctcaggtcggccagttcatt 707
Query: 663 aagttcgatgagatgt 678
||||||||||||||||
Sbjct: 708 aagttcgatgagatgt 723
>gb|DN551908.1|DN551908 pSPR-RT-MR-H2_E02_C027 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 871
Score = 743 bits (375), Expect = 0.0
Identities = 501/543 (92%)
Strand = Plus / Minus
Query: 246 gaaagtcagtttaatcaggtgctgaacattgagttgcaacaaatcatcgaggcttgcaaa 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 gaaagtcagtttaatcaggtgctgaacattgagttgcaacaaatcatcgaggcttgcaag 809
Query: 306 tttcttgatgagaaatggaatcccaagttcacgttgattattgcccagaagaatcatcac 365
||| | ||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct: 808 tttttggatgaaaaatggaatccgaagttcacgttgattattgcgcagaagaatcaccac 749
Query: 366 actaaatttttcattcctggaaagccagataatgtcccaccaggaactgtggtggacaac 425
|||||||||||||||||||||||| |||| ||||| ||| | |||||||| |||||||||
Sbjct: 748 actaaatttttcattcctggaaagacagaaaatgttccagctggaactgttgtggacaac 689
Query: 426 aaagtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatgatcggg 485
||||| || ||||||| |||||| || |||||||||||| ||||||||||||||||||||
Sbjct: 688 aaagtttgtcatccaaggaactttgacttctacatgtgttcgcatgctggaatgatcggg 629
Query: 486 actacgaggccaactcactaccacatcctgcatgatgagataggcttcagtcctgatgat 545
||||||||||||||||| || || || |||||||||||||||||||||| ||||||||||
Sbjct: 628 actacgaggccaactcattatcatattctgcatgatgagataggcttcaatcctgatgat 569
Query: 546 ctgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatca 605
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 568 ctgcaggagctggtgcattcgctctcttacgtgtaccaaaggagcacaacagccatatca 509
Query: 606 gtcgttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaag 665
|| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |||
Sbjct: 508 gttgttgctcccatctgctatgcacatctggcagcagctcaggtcggccagttcattaag 449
Query: 666 ttcgatgagatgtcggagacgtcctccagtcatggcgggcatacttcggcgggcagcgtt 725
|||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||
Sbjct: 448 ttcgatgagatgtcggagacatcctccagccatggtggccatacttcggcgggcagcgtc 389
Query: 726 ccggtccaggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctga 785
|| ||||||||||| || || || ||||||||||| ||||||||||||||||| ||||||
Sbjct: 388 cctgtccaggagctacctcgtctacatgagaaagtcaggagctcgatgttcttctgctga 329
Query: 786 gcc 788
|||
Sbjct: 328 gcc 326
Score = 46.1 bits (23), Expect = 0.006
Identities = 39/43 (90%), Gaps = 1/43 (2%)
Strand = Plus / Minus
Query: 890 gatgttaaatgttagttttttaagcgtcgctgcggctatgttg 932
||||||||||||||| ||||||||| ||||||| | |||||||
Sbjct: 151 gatgttaaatgttag-tttttaagcatcgctgcagttatgttg 110
>gb|CF482007.1|CF482007 POL1_76_B05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_76_B05_A002 3', mRNA sequence
Length = 683
Score = 628 bits (317), Expect = e-178
Identities = 437/477 (91%)
Strand = Plus / Plus
Query: 312 gatgagaaatggaatcccaagttcacgttgattattgcccagaagaatcatcacactaaa 371
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 12 gatgaaaaatggaatccaaagttcacgttgattattgcccagaagaatcaccacactaaa 71
Query: 372 tttttcattcctggaaagccagataatgtcccaccaggaactgtggtggacaacaaagtc 431
||||| |||||||||||| |||| ||||| ||| | |||||||| ||||||||||||||
Sbjct: 72 ttttttattcctggaaagacagaaaatgttccagctggaactgttgtggacaacaaagtt 131
Query: 432 tgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatgatcgggactacg 491
|| ||||||| |||||| || |||||||||||| | ||||||||||||||||||||||||
Sbjct: 132 tgtcatccaaggaactttgacttctacatgtgttcacatgctggaatgatcgggactacg 191
Query: 492 aggccaactcactaccacatcctgcatgatgagataggcttcagtcctgatgatctgcag 551
||||||||||| || || || |||||||||||||||||||||| ||||||||||||||||
Sbjct: 192 aggccaactcattatcatatactgcatgatgagataggcttcaatcctgatgatctgcag 251
Query: 552 gagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatcagtcgtt 611
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 252 gagctggtgcattcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgtt 311
Query: 612 gctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaagttcgat 671
|||||||| ||||| |||||||||||||| |||||||| ||||||||||| || ||||||
Sbjct: 312 gctcccatttgctatgcacatctggcagcagctcaggtcggccagttcattaatttcgat 371
Query: 672 gagatgtcggagacgtcctccagtcatggcgggcatacttcggcgggcagcgttccggtc 731
|||||||||||||| |||||||| |||||||| |||||||||||||||||||| || |||
Sbjct: 372 gagatgtcggagacatcctccagccatggcggccatacttcggcgggcagcgtccctgtc 431
Query: 732 caggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctgagcc 788
|||||||| || || || ||||||||||| |||||||||||||||||||||||||||
Sbjct: 432 caggagctacctcgtctacatgagaaagtcaggagctcgatgttcttttgctgagcc 488
Score = 42.1 bits (21), Expect = 0.100
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 890 gatgttaaatgttagtttttt 910
|||||||||||||||||||||
Sbjct: 663 gatgttaaatgttagtttttt 683
>gb|BG649190.1|BG649190 EM1_77_G11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 602
Score = 593 bits (299), Expect = e-167
Identities = 407/443 (91%)
Strand = Plus / Plus
Query: 346 ttgcccagaagaatcatcacactaaatttttcattcctggaaagccagataatgtcccac 405
|||||||||||||||| |||||||||||||| |||||||||||| |||| ||||| |||
Sbjct: 1 ttgcccagaagaatcaccacactaaattttttattcctggaaagacagaaaatgttccag 60
Query: 406 caggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgtg 465
| |||||||| |||||||||||||| || ||||||| |||||| || ||||||||||||
Sbjct: 61 ctggaactgttgtggacaacaaagtttgtcatccaaggaactttgacttctacatgtgtt 120
Query: 466 cgcatgctggaatgatcgggactacgaggccaactcactaccacatcctgcatgatgaga 525
| ||||||||||||||||||||||||||||||||||| || || || |||||||||||||
Sbjct: 121 cacatgctggaatgatcgggactacgaggccaactcattatcatatactgcatgatgaga 180
Query: 526 taggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaa 585
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 181 taggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtaccaaa 240
Query: 586 ggagcacaacagccatatcagtcgttgctcccatctgctacgcacatctggcagctgctc 645
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct: 241 ggagcacaacagccatatcagttgttgctcccatctgctatgcacatctggcagcagctc 300
Query: 646 aggttggccagttcataaagttcgatgagatgtcggagacgtcctccagtcatggcgggc 705
|||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |
Sbjct: 301 aggtcggccagttcattaagttcgatgagatgtcggagacatcctccagccatggcggcc 360
Query: 706 atacttcggcgggcagcgttccggtccaggagctgccgcgcctgcatgagaaagtgagga 765
||||||||||||||||||| || ||||||||||| || || || ||||||||||| ||||
Sbjct: 361 atacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcagga 420
Query: 766 gctcgatgttcttttgctgagcc 788
|||||||||||||||||||||||
Sbjct: 421 gctcgatgttcttttgctgagcc 443
>gb|BG948185.1|BG948185 IP1_10_D07.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 597
Score = 543 bits (274), Expect = e-152
Identities = 376/410 (91%)
Strand = Plus / Plus
Query: 379 ttcctggaaagccagataatgtcccaccaggaactgtggtggacaacaaagtctgccatc 438
||||||||||| |||| ||||| ||| | |||||||| |||||||||||||| || ||||
Sbjct: 1 ttcctggaaagacagaaaatgttccagctggaactgttgtggacaacaaagtttgtcatc 60
Query: 439 caaagaacttcgatttctacatgtgtgcgcatgctggaatgatcgggactacgaggccaa 498
||| |||||| || |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 61 caaggaactttgacttctacatgtgttcacatgctggaatgatcgggactacgaggccaa 120
Query: 499 ctcactaccacatcctgcatgatgagataggcttcagtcctgatgatctgcaggagctgg 558
|||| || || || |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 121 ctcattatcatatactgcatgatgagataggcttcaatcctgatgatctgcaggagctgg 180
Query: 559 tgcattcgctctcttatgtgtaccaaaggagcacaacagccatatcagtcgttgctccca 618
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 181 tgcattcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctccca 240
Query: 619 tctgctacgcacatctggcagctgctcaggttggccagttcataaagttcgatgagatgt 678
||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct: 241 tctgctatgcacatctggcagcagctcaggtcggccagttcattaagttcgatgagatgt 300
Query: 679 cggagacgtcctccagtcatggcgggcatacttcggcgggcagcgttccggtccaggagc 738
||||||| |||||||| |||||||| |||||||||||||||||||| || ||||||||||
Sbjct: 301 cggagacatcctccagccatggcggccatacttcggcgggcagcgtccctgtccaggagc 360
Query: 739 tgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctgagcc 788
| || || || ||||||||||| |||||||||||||||||||||||||||
Sbjct: 361 tacctcgtctacatgagaaagtcaggagctcgatgttcttttgctgagcc 410
>gb|BG412421.1|BG412421 OV2_33_H08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 677
Score = 525 bits (265), Expect = e-147
Identities = 352/381 (92%)
Strand = Plus / Plus
Query: 408 ggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgtgcg 467
|||||||| |||||||||||||| || ||||||| |||||| || |||||||||||| |
Sbjct: 17 ggaactgttgtggacaacaaagtttgtcatccaaggaactttgacttctacatgtgttca 76
Query: 468 catgctggaatgatcgggactacgaggccaactcactaccacatcctgcatgatgagata 527
||||||||||||||||||||||||||||||||||| || || || |||||||||||||||
Sbjct: 77 catgctggaatgatcgggactacgaggccaactcattatcatatactgcatgatgagata 136
Query: 528 ggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaagg 587
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 137 ggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtaccaaagg 196
Query: 588 agcacaacagccatatcagtcgttgctcccatctgctacgcacatctggcagctgctcag 647
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct: 197 agcacaacagccatatcagttgttgctcccatctgctatgcacatctggcagcagctcag 256
Query: 648 gttggccagttcataaagttcgatgagatgtcggagacgtcctccagtcatggcgggcat 707
|| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct: 257 gtcggccagttcattaagttcgatgagatgtcggagacatcctccagccatggcggccat 316
Query: 708 acttcggcgggcagcgttccggtccaggagctgccgcgcctgcatgagaaagtgaggagc 767
||||||||||||||||| || ||||||||||| || || || ||||||||||| ||||||
Sbjct: 317 acttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcaggagc 376
Query: 768 tcgatgttcttttgctgagcc 788
|||||||||||||||||||||
Sbjct: 377 tcgatgttcttttgctgagcc 397
Score = 48.1 bits (24), Expect = 0.002
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 890 gatgttaaatgttagttttttaagcgtcgctgcggctatgttgg 933
||||||||||||||| ||||||||| ||||||| | ||||||||
Sbjct: 572 gatgttaaatgttag-tttttaagcatcgctgcagttatgttgg 614
>gb|BF587888.1|BF587888 FM1_34_C12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 656
Score = 517 bits (261), Expect = e-145
Identities = 351/381 (92%)
Strand = Plus / Plus
Query: 408 ggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgtgcg 467
|||||||| |||||||||||||| || ||||||| |||||| || |||||||||||| ||
Sbjct: 16 ggaactgttgtggacaacaaagtttgtcatccaaggaactttgacttctacatgtgttcg 75
Query: 468 catgctggaatgatcgggactacgaggccaactcactaccacatcctgcatgatgagata 527
||||||||||||||||||||||||||||||||||| || || || |||||||||||||||
Sbjct: 76 catgctggaatgatcgggactacgaggccaactcattatcatattctgcatgatgagata 135
Query: 528 ggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaagg 587
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 136 ggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtaccaaagg 195
Query: 588 agcacaacagccatatcagtcgttgctcccatctgctacgcacatctggcagctgctcag 647
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct: 196 agcacaacagccatatcagttgttgctcccatctgctatgcacatctggcagcagctcag 255
Query: 648 gttggccagttcataaagttcgatgagatgtcggagacgtcctccagtcatggcgggcat 707
|| ||||||||||| ||||||||||||||||||||||| |||||||| ||||| || |||
Sbjct: 256 gtcggccagttcattaagttcgatgagatgtcggagacatcctccagccatggtggccat 315
Query: 708 acttcggcgggcagcgttccggtccaggagctgccgcgcctgcatgagaaagtgaggagc 767
||||||||||||||||| || ||||||||||| || || || ||||||||||| ||||||
Sbjct: 316 acttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcaggagc 375
Query: 768 tcgatgttcttttgctgagcc 788
||||||||||| |||||||||
Sbjct: 376 tcgatgttcttctgctgagcc 396
Score = 46.1 bits (23), Expect = 0.006
Identities = 39/43 (90%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 890 gatgttaaatgttagttttttaagcgtcgctgcggctatgttg 932
||||||||||||||| ||||||||| ||||||| | |||||||
Sbjct: 571 gatgttaaatgttag-tttttaagcatcgctgcagttatgttg 612
>gb|BI245776.1|BI245776 IP1_64_C06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 676
Score = 509 bits (257), Expect = e-142
Identities = 341/369 (92%)
Strand = Plus / Plus
Query: 420 gacaacaaagtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatg 479
||||||||||| || ||||||| |||||| || |||||||||||| | ||||||||||||
Sbjct: 1 gacaacaaagtttgtcatccaaggaactttgacttctacatgtgttcacatgctggaatg 60
Query: 480 atcgggactacgaggccaactcactaccacatcctgcatgatgagataggcttcagtcct 539
||||||||||||||||||||||| || || || |||||||||||||||||||||| ||||
Sbjct: 61 atcgggactacgaggccaactcattatcatatactgcatgatgagataggcttcaatcct 120
Query: 540 gatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagcc 599
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 121 gatgatctgcaggagctggtgcattcgctctcttacgtgtaccaaaggagcacaacagcc 180
Query: 600 atatcagtcgttgctcccatctgctacgcacatctggcagctgctcaggttggccagttc 659
|||||||| ||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct: 181 atatcagttgttgctcccatctgctatgcacatctggcagcagctcaggtcggccagttc 240
Query: 660 ataaagttcgatgagatgtcggagacgtcctccagtcatggcgggcatacttcggcgggc 719
|| ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct: 241 attaagttcgatgagatgtcggagacatcctccagccatggcggccatacttcggcgggc 300
Query: 720 agcgttccggtccaggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttt 779
||||| || ||||||||||| || || || ||||||||||| ||||||||||||||||||
Sbjct: 301 agcgtccctgtccaggagctacctcgtctacatgagaaagtcaggagctcgatgttcttt 360
Query: 780 tgctgagcc 788
|||||||||
Sbjct: 361 tgctgagcc 369
Score = 54.0 bits (27), Expect = 3e-005
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 936 cctcaggaagacttggaacctggttaggatgtcgttaaa 974
||||||||||||||||||||| | |||||||||||||||
Sbjct: 611 cctcaggaagacttggaaccttg-taggatgtcgttaaa 648
Score = 48.1 bits (24), Expect = 0.002
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 890 gatgttaaatgttagttttttaagcgtcgctgcggctatgttgg 933
||||||||||||||| ||||||||| ||||||| | ||||||||
Sbjct: 544 gatgttaaatgttag-tttttaagcatcgctgcagttatgttgg 586
>gb|CN134426.1|CN134426 OX1_26_F12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_F12_A002 3', mRNA sequence
Length = 733
Score = 509 bits (257), Expect = e-142
Identities = 380/421 (90%)
Strand = Plus / Plus
Query: 368 taaatttttcattcctggaaagccagataatgtcccaccaggaactgtggtggacaacaa 427
||||||||| |||||||||||| |||| ||||| ||| | |||||||| |||||||||||
Sbjct: 1 taaattttttattcctggaaagacagaaaatgttccagctggaactgttgtggacaacaa 60
Query: 428 agtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatgatcgggac 487
||| || ||||||| |||||| || |||||||||||| | ||||||||||||||||||||
Sbjct: 61 agtttgtcatccaaggaactttgacttctacatgtgttcacatgctggaatgatcgggac 120
Query: 488 tacgaggccaactcactaccacatcctgcatgatgagataggcttcagtcctgatgatct 547
||||||||||||||| || || || |||||||||||||||||||||| ||||||||||||
Sbjct: 121 tacgaggccaactcattatcatatactgcatgatgagataggcttcaatcctgatgatct 180
Query: 548 gcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatcagt 607
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 181 gcaggagctggtgcattcgctttcttacgtgtaccaaaggagcacaacagccatatcagt 240
Query: 608 cgttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaagtt 667
||||||||||| ||||| |||||||||||||| |||||||| ||||||||||| |||||
Sbjct: 241 tgttgctcccatttgctatgcacatctggcagcagctcaggtcggccagttcattaagtt 300
Query: 668 cgatgagatgtcggagacgtcctccagtcatggcgggcatacttcggcgggcagcgttcc 727
|||||||||||||||||| |||||||| |||||||| ||||||| ||||||||| || ||
Sbjct: 301 cgatgagatgtcggagacatcctccagccatggcggccatactttggcgggcagggtccc 360
Query: 728 ggtccaggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctgagc 787
||||||||||| || | | ||||||||||| ||||||||||||||||||||||||||
Sbjct: 361 tgtccaggagctaccttgtttacatgagaaagtcaggagctcgatgttcttttgctgagc 420
Query: 788 c 788
|
Sbjct: 421 c 421
Score = 54.0 bits (27), Expect = 3e-005
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 936 cctcaggaagacttggaacctggttaggatgtcgttaaa 974
||||||||||||||||||||| | |||||||||||||||
Sbjct: 663 cctcaggaagacttggaaccttg-taggatgtcgttaaa 700
Score = 48.1 bits (24), Expect = 0.002
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 890 gatgttaaatgttagttttttaagcgtcgctgcggctatgttgg 933
||||||||||||||| ||||||||| ||||||| | ||||||||
Sbjct: 596 gatgttaaatgttag-tttttaagcatcgctgcagttatgttgg 638
>gb|BG605739.1|BG605739 RHIZ2_80_H09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 646
Score = 504 bits (254), Expect = e-141
Identities = 338/366 (92%)
Strand = Plus / Plus
Query: 423 aacaaagtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatgatc 482
|||||||| || ||||||| |||||| || |||||||||||| | |||||||||||||||
Sbjct: 1 aacaaagtttgtcatccaaggaactttgacttctacatgtgttcacatgctggaatgatc 60
Query: 483 gggactacgaggccaactcactaccacatcctgcatgatgagataggcttcagtcctgat 542
|||||||||||||||||||| || || || |||||||||||||||||||||| |||||||
Sbjct: 61 gggactacgaggccaactcattatcatatactgcatgatgagataggcttcaatcctgat 120
Query: 543 gatctgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccata 602
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 121 gatctgcaggagctggtgcattcgctctcttacgtgtaccaaaggagcacaacagccata 180
Query: 603 tcagtcgttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcata 662
||||| ||||||||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct: 181 tcagttgttgctcccatctgctatgcacatctggcagcagctcaggtcggccagttcatt 240
Query: 663 aagttcgatgagatgtcggagacgtcctccagtcatggcgggcatacttcggcgggcagc 722
||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct: 241 aagttcgatgagatgtcggagacatcctccagccatggcggccatacttcggcgggcagc 300
Query: 723 gttccggtccaggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgc 782
|| || ||||||||||| || || || ||||||||||| |||||||||||||||||||||
Sbjct: 301 gtccctgtccaggagctacctcgtctacatgagaaagtcaggagctcgatgttcttttgc 360
Query: 783 tgagcc 788
||||||
Sbjct: 361 tgagcc 366
Score = 54.0 bits (27), Expect = 3e-005
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 936 cctcaggaagacttggaacctggttaggatgtcgttaaa 974
||||||||||||||||||||| | |||||||||||||||
Sbjct: 608 cctcaggaagacttggaaccttg-taggatgtcgttaaa 645
Score = 48.1 bits (24), Expect = 0.002
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 890 gatgttaaatgttagttttttaagcgtcgctgcggctatgttgg 933
||||||||||||||| ||||||||| ||||||| | ||||||||
Sbjct: 541 gatgttaaatgttag-tttttaagcatcgctgcagttatgttgg 583
>gb|CF485232.1|CF485232 POL1_30_F05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_30_F05_A002 3', mRNA sequence
Length = 638
Score = 494 bits (249), Expect = e-138
Identities = 327/353 (92%)
Strand = Plus / Plus
Query: 436 atccaaagaacttcgatttctacatgtgtgcgcatgctggaatgatcgggactacgaggc 495
|||||| |||||| || |||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 1 atccaaggaactttgacttctacatgtgttcacatgctggaatgatcgggactacgaggc 60
Query: 496 caactcactaccacatcctgcatgatgagataggcttcagtcctgatgatctgcaggagc 555
||||||| || || || |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 61 caactcattatcatatactgcatgatgagataggcttcaatcctgatgatctgcaggagc 120
Query: 556 tggtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatcagtcgttgctc 615
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 121 tggtgcattcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgctc 180
Query: 616 ccatctgctacgcacatctggcagctgctcaggttggccagttcataaagttcgatgaga 675
|||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct: 181 ccatctgctatgcacatctggcagcagctcaggtcggccagttcattaagttcgatgaga 240
Query: 676 tgtcggagacgtcctccagtcatggcgggcatacttcggcgggcagcgttccggtccagg 735
|||||||||| |||||||| |||||||| |||||||||||||||||||| || |||||||
Sbjct: 241 tgtcggagacatcctccagccatggcggccatacttcggcgggcagcgtccctgtccagg 300
Query: 736 agctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctgagcc 788
|||| || || || ||||||||||| |||||||||||||||||||||||||||
Sbjct: 301 agctacctcgtctacatgagaaagtcaggagctcgatgttcttttgctgagcc 353
Score = 52.0 bits (26), Expect = 1e-004
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 936 cctcaggaagacttggaacctggttaggatgtcgttaa 973
||||||||||||||||||||| | ||||||||||||||
Sbjct: 595 cctcaggaagacttggaaccttg-taggatgtcgttaa 631
Score = 48.1 bits (24), Expect = 0.002
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 890 gatgttaaatgttagttttttaagcgtcgctgcggctatgttgg 933
||||||||||||||| ||||||||| ||||||| | ||||||||
Sbjct: 528 gatgttaaatgttag-tttttaagcatcgctgcagttatgttgg 570
>gb|BG103497.1|BG103497 RHIZ2_37_C08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 635
Score = 488 bits (246), Expect = e-136
Identities = 327/354 (92%)
Strand = Plus / Plus
Query: 435 catccaaagaacttcgatttctacatgtgtgcgcatgctggaatgatcgggactacgagg 494
||||||| |||||| || |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 7 catccaaggaactttgacttctacatgtgttcgcatgctggaatgatcgggactacgagg 66
Query: 495 ccaactcactaccacatcctgcatgatgagataggcttcagtcctgatgatctgcaggag 554
|||||||| || || || |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 67 ccaactcattatcatattctgcatgatgagataggcttcaatcctgatgatctgcaggag 126
Query: 555 ctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatcagtcgttgct 614
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 127 ctggtgcattcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgct 186
Query: 615 cccatctgctacgcacatctggcagctgctcaggttggccagttcataaagttcgatgag 674
||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct: 187 cccatctgctatgcacatctggcagcagctcaggtcggccagttcattaagttcgatgag 246
Query: 675 atgtcggagacgtcctccagtcatggcgggcatacttcggcgggcagcgttccggtccag 734
||||||||||| |||||||| ||||| || |||||||||||||||||||| || ||||||
Sbjct: 247 atgtcggagacatcctccagccatggtggccatacttcggcgggcagcgtccctgtccag 306
Query: 735 gagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctgagcc 788
||||| || || || ||||||||||| ||||||||||||||||| |||||||||
Sbjct: 307 gagctacctcgtctacatgagaaagtcaggagctcgatgttcttctgctgagcc 360
Score = 46.1 bits (23), Expect = 0.006
Identities = 39/43 (90%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 890 gatgttaaatgttagttttttaagcgtcgctgcggctatgttg 932
||||||||||||||| ||||||||| ||||||| | |||||||
Sbjct: 535 gatgttaaatgttag-tttttaagcatcgctgcagttatgttg 576
>gb|BI140650.1|BI140650 IP1_52_A07.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 531
Score = 488 bits (246), Expect = e-136
Identities = 288/302 (95%)
Strand = Plus / Plus
Query: 3 tctcctggacattctgatgtaccgtctgttgctgctgttgttagttctcgtgaatggcct 62
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 218 tctcctggacattctgatgtaccgtccattgctgctgttgttagttctcgtgaatggcct 277
Query: 63 cttatctcgaaatacagagcatctgtccgcacccaatcaccaaaaatggaaatgattgac 122
|||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||||
Sbjct: 278 cttatctcgaaatatagagcttctgtccgcacccaatcacctaagatggaaatgattgac 337
Query: 123 tcattgtttaagccacgggaagctgaagatgatggtctgatccgggagtgtctgattgac 182
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tctttgtttaagccacgggaaactgaagatgatggtctgatccgggagtgtctgattgac 397
Query: 183 ttctacaccagttctgggaagagaaagcctgaccaagttatcatattcagggacggtgtt 242
|||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||
Sbjct: 398 ttctacaccagttctgggaagaagaagcctgaccaagtcatcatcttcagggatggtgtt 457
Query: 243 agcgaaagtcagtttaatcaggtgctgaacattgagttgcaacaaatcatcgaggcttgc 302
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 agtgaaagtcagtttaatcaggtgctgaacattgagttgcaacaaatcatcgaggcttgc 517
Query: 303 aa 304
||
Sbjct: 518 aa 519
>gb|BF585842.1|BF585842 FM1_25_B08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 651
Score = 482 bits (243), Expect = e-134
Identities = 326/354 (92%)
Strand = Plus / Plus
Query: 435 catccaaagaacttcgatttctacatgtgtgcgcatgctggaatgatcgggactacgagg 494
||||||| |||||| || |||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 7 catccaaggaactttgacttctacatgtgttcgcatgctgnaatgatcgggactacgagg 66
Query: 495 ccaactcactaccacatcctgcatgatgagataggcttcagtcctgatgatctgcaggag 554
|||||||| || || || |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 67 ccaactcattatcatattctgcatgatgagataggcttcaatcctgatgatctgcaggag 126
Query: 555 ctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatcagtcgttgct 614
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 127 ctggtgcattcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgttgct 186
Query: 615 cccatctgctacgcacatctggcagctgctcaggttggccagttcataaagttcgatgag 674
||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct: 187 cccatctgctatgcacatctggcagcagctcaggtcggccagttcattaagttcgatgag 246
Query: 675 atgtcggagacgtcctccagtcatggcgggcatacttcggcgggcagcgttccggtccag 734
||||||||||| |||||||| ||||| || |||||||||||||||||||| || ||||||
Sbjct: 247 atgtcggagacatcctccagccatggtggccatacttcggcgggcagcgtccctgtccag 306
Query: 735 gagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctgagcc 788
||||| || || || ||||||||||| ||||||||||||||||| |||||||||
Sbjct: 307 gagctacctcgtctacatgagaaagtcaggagctcgatgttcttctgctgagcc 360
Score = 46.1 bits (23), Expect = 0.006
Identities = 39/43 (90%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 890 gatgttaaatgttagttttttaagcgtcgctgcggctatgttg 932
||||||||||||||| ||||||||| ||||||| | |||||||
Sbjct: 535 gatgttaaatgttag-tttttaagcatcgctgcagttatgttg 576
>gb|BM328689.1|BM328689 PIC1_25_D06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 631
Score = 470 bits (237), Expect = e-130
Identities = 300/321 (93%)
Strand = Plus / Plus
Query: 468 catgctggaatgatcgggactacgaggccaactcactaccacatcctgcatgatgagata 527
||||||||||||||||||||||||||||||||||| || || || |||||||||||||||
Sbjct: 4 catgctggaatgatcgggactacgaggccaactcattatcatatactgcatgatgagata 63
Query: 528 ggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaagg 587
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 64 ggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtaccaaagg 123
Query: 588 agcacaacagccatatcagtcgttgctcccatctgctacgcacatctggcagctgctcag 647
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct: 124 agcacaacagccatatcagttgttgctcccatctgctatgcacatctggcagcagctcag 183
Query: 648 gttggccagttcataaagttcgatgagatgtcggagacgtcctccagtcatggcgggcat 707
|| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct: 184 gtcggccagttcattaagttcgatgagatgtcggagacatcctccagccatggcggccat 243
Query: 708 acttcggcgggcagcgttccggtccaggagctgccgcgcctgcatgagaaagtgaggagc 767
||||||||||||||||| || ||||||||||| || || || ||||||||||| ||||||
Sbjct: 244 acttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcaggagc 303
Query: 768 tcgatgttcttttgctgagcc 788
|||||||||||||||||||||
Sbjct: 304 tcgatgttcttttgctgagcc 324
Score = 54.0 bits (27), Expect = 3e-005
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 936 cctcaggaagacttggaacctggttaggatgtcgttaaa 974
||||||||||||||||||||| | |||||||||||||||
Sbjct: 566 cctcaggaagacttggaaccttg-taggatgtcgttaaa 603
Score = 48.1 bits (24), Expect = 0.002
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 890 gatgttaaatgttagttttttaagcgtcgctgcggctatgttgg 933
||||||||||||||| ||||||||| ||||||| | ||||||||
Sbjct: 499 gatgttaaatgttag-tttttaagcatcgctgcagttatgttgg 541
>gb|BG241626.1|BG241626 RHIZ2_17_H06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 602
Score = 462 bits (233), Expect = e-128
Identities = 305/329 (92%)
Strand = Plus / Plus
Query: 460 tgtgtgcgcatgctggaatgatcgggactacgaggccaactcactaccacatcctgcatg 519
||||| ||||||||||||||||||||||||||||||||||||| || || || |||||||
Sbjct: 1 tgtgttcgcatgctggaatgatcgggactacgaggccaactcattatcatattctgcatg 60
Query: 520 atgagataggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgt 579
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 61 atgagataggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgt 120
Query: 580 accaaaggagcacaacagccatatcagtcgttgctcccatctgctacgcacatctggcag 639
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 121 accaaaggagcacaacagccatatcagttgttgctcccatctgctatgcacatctggcag 180
Query: 640 ctgctcaggttggccagttcataaagttcgatgagatgtcggagacgtcctccagtcatg 699
| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct: 181 cagctcaggtcggccagttcattaagttcgatgagatgtcggagacatcctccagccatg 240
Query: 700 gcgggcatacttcggcgggcagcgttccggtccaggagctgccgcgcctgcatgagaaag 759
| || |||||||||||||||||||| || ||||||||||| || || || ||||||||||
Sbjct: 241 gtggccatacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaag 300
Query: 760 tgaggagctcgatgttcttttgctgagcc 788
| ||||||||||||||||| |||||||||
Sbjct: 301 tcaggagctcgatgttcttctgctgagcc 329
Score = 46.1 bits (23), Expect = 0.006
Identities = 39/43 (90%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 890 gatgttaaatgttagttttttaagcgtcgctgcggctatgttg 932
||||||||||||||| ||||||||| ||||||| | |||||||
Sbjct: 504 gatgttaaatgttag-tttttaagcatcgctgcagttatgttg 545
>gb|BG052653.1|BG052653 RHIZ2_27_F12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 634
Score = 458 bits (231), Expect = e-127
Identities = 300/323 (92%)
Strand = Plus / Plus
Query: 466 cgcatgctggaatgatcgggactacgaggccaactcactaccacatcctgcatgatgaga 525
||||||||||||||||||||||||||||||||||||| || || || |||||||||||||
Sbjct: 5 cgcatgctggaatgatcgggactacgaggccaactcattatcatattctgcatgatgaga 64
Query: 526 taggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaa 585
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 65 taggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtaccaaa 124
Query: 586 ggagcacaacagccatatcagtcgttgctcccatctgctacgcacatctggcagctgctc 645
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct: 125 ggagcacaacagccatatcagttgttgctcccatctgctatgcacatctggcagcagctc 184
Query: 646 aggttggccagttcataaagttcgatgagatgtcggagacgtcctccagtcatggcgggc 705
|||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||| || |
Sbjct: 185 aggtcggccagttcattaagttcgatgagatgtcggagacatcctccagccatggtggcc 244
Query: 706 atacttcggcgggcagcgttccggtccaggagctgccgcgcctgcatgagaaagtgagga 765
||||||||||||||||||| || ||||||||||| || || || ||||||||||| ||||
Sbjct: 245 atacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcagga 304
Query: 766 gctcgatgttcttttgctgagcc 788
||||||||||||| |||||||||
Sbjct: 305 gctcgatgttcttctgctgagcc 327
Score = 46.1 bits (23), Expect = 0.006
Identities = 39/43 (90%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 890 gatgttaaatgttagttttttaagcgtcgctgcggctatgttg 932
||||||||||||||| ||||||||| ||||||| | |||||||
Sbjct: 502 gatgttaaatgttag-tttttaagcatcgctgcagttatgttg 543
>gb|BI351076.1|BI351076 IP1_69_E06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 680
Score = 440 bits (222), Expect = e-121
Identities = 285/306 (93%)
Strand = Plus / Plus
Query: 483 gggactacgaggccaactcactaccacatcctgcatgatgagataggcttcagtcctgat 542
|||||||||||||||||||| || || || |||||||||||||||||||||| |||||||
Sbjct: 68 gggactacgaggccaactcattatcatatactgcatgatgagataggcttcaatcctgat 127
Query: 543 gatctgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccata 602
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 128 gatctgcaggagctggtgcattcgctctcttacgtgtaccaaaggagcacaacagccata 187
Query: 603 tcagtcgttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcata 662
||||| ||||||||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct: 188 tcagttgttgctcccatctgctatgcacatctggcagcagctcaggtcggccagttcatt 247
Query: 663 aagttcgatgagatgtcggagacgtcctccagtcatggcgggcatacttcggcgggcagc 722
||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct: 248 aagttcgatgagatgtcggagacatcctccagccatggcggccatacttcggcgggcagc 307
Query: 723 gttccggtccaggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgc 782
|| || ||||||||||| || || || ||||||||||| |||||||||||||||||||||
Sbjct: 308 gtccctgtccaggagctacctcgtctacatgagaaagtcaggagctcgatgttcttttgc 367
Query: 783 tgagcc 788
||||||
Sbjct: 368 tgagcc 373
Score = 54.0 bits (27), Expect = 3e-005
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 936 cctcaggaagacttggaacctggttaggatgtcgttaaa 974
||||||||||||||||||||| | |||||||||||||||
Sbjct: 615 cctcaggaagacttggaaccttg-taggatgtcgttaaa 652
Score = 48.1 bits (24), Expect = 0.002
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 890 gatgttaaatgttagttttttaagcgtcgctgcggctatgttgg 933
||||||||||||||| ||||||||| ||||||| | ||||||||
Sbjct: 548 gatgttaaatgttag-tttttaagcatcgctgcagttatgttgg 590
>gb|BF655915.1|BF655915 FM1_42_D11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 609
Score = 416 bits (210), Expect = e-114
Identities = 279/302 (92%)
Strand = Plus / Plus
Query: 487 ctacgaggccaactcactaccacatcctgcatgatgagataggcttcagtcctgatgatc 546
|||||||||||||||| || || || |||||||||||||||||||||| |||||||||||
Sbjct: 1 ctacgaggccaactcattatcatattctgcatgatgagataggcttcaatcctgatgatc 60
Query: 547 tgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatcag 606
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 61 tgcaggagctggtgcattcgctctcttacgtgtaccaaaggagcacaacagccatatcag 120
Query: 607 tcgttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaagt 666
| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||
Sbjct: 121 ttgttgctcccatctgctatgcacatctggcagcagctcaggtcggccagttcattaagt 180
Query: 667 tcgatgagatgtcggagacgtcctccagtcatggcgggcatacttcggcgggcagcgttc 726
||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||| |
Sbjct: 181 tcgatgagatgtcggagacatcctccagccatggtggccatacttcggcgggcagcgtcc 240
Query: 727 cggtccaggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctgag 786
| ||||||||||| || || || ||||||||||| ||||||||||||||||| |||||||
Sbjct: 241 ctgtccaggagctacctcgtctacatgagaaagtcaggagctcgatgttcttctgctgag 300
Query: 787 cc 788
||
Sbjct: 301 cc 302
Score = 46.1 bits (23), Expect = 0.006
Identities = 39/43 (90%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 890 gatgttaaatgttagttttttaagcgtcgctgcggctatgttg 932
||||||||||||||| ||||||||| ||||||| | |||||||
Sbjct: 477 gatgttaaatgttag-tttttaagcatcgctgcagttatgttg 518
>gb|BG355831.1|BG355831 EM1_17_C03.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 541
Score = 412 bits (208), Expect = e-113
Identities = 259/276 (93%)
Strand = Plus / Plus
Query: 513 ctgcatgatgagataggcttcagtcctgatgatctgcaggagctggtgcattcgctctct 572
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 17 ctgcatgatgagataggcttcaatcctgatgatctgcaggagctggtgcattcgctctct 76
Query: 573 tatgtgtaccaaaggagcacaacagccatatcagtcgttgctcccatctgctacgcacat 632
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 77 tacgtgtaccaaaggagcacaacagccatatcagttgttgctcccatctgctatgcacat 136
Query: 633 ctggcagctgctcaggttggccagttcataaagttcgatgagatgtcggagacgtcctcc 692
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 137 ctggcagcagctcaggtcggccagttcattaagttcgatgagatgtcggagacatcctcc 196
Query: 693 agtcatggcgggcatacttcggcgggcagcgttccggtccaggagctgccgcgcctgcat 752
|| |||||||| |||||||||||||||||||| || ||||||||||| || || || |||
Sbjct: 197 agccatggcggccatacttcggcgggcagcgtccctgtccaggagctacctcgtctacat 256
Query: 753 gagaaagtgaggagctcgatgttcttttgctgagcc 788
|||||||| |||||||||||||||||||||||||||
Sbjct: 257 gagaaagtcaggagctcgatgttcttttgctgagcc 292
Score = 48.1 bits (24), Expect = 0.002
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 890 gatgttaaatgttagttttttaagcgtcgctgcggctatgttgg 933
||||||||||||||| ||||||||| ||||||| | ||||||||
Sbjct: 467 gatgttaaatgttag-tttttaagcatcgctgcagttatgttgg 509
>gb|BF422058.1|BF422058 FM1_12_D07.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 529
Score = 375 bits (189), Expect = e-102
Identities = 246/265 (92%)
Strand = Plus / Plus
Query: 524 gataggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgtacca 583
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 4 gataggcttcaatcctgatgatctgcaggagctggtgcattcgctctcttacgtgtacca 63
Query: 584 aaggagcacaacagccatatcagtcgttgctcccatctgctacgcacatctggcagctgc 643
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 64 aaggagcacaacagccatatcagttgttgctcccatctgctatgcacatctggcagcagc 123
Query: 644 tcaggttggccagttcataaagttcgatgagatgtcggagacgtcctccagtcatggcgg 703
|||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||
Sbjct: 124 tcaggtcggccagttcattaagttcgatgagatgtcggagacatcctccagccatggtgg 183
Query: 704 gcatacttcggcgggcagcgttccggtccaggagctgccgcgcctgcatgagaaagtgag 763
|||||||||||||||||||| || ||||||||||| || || || ||||||||||| ||
Sbjct: 184 ccatacttcggcgggcagcgtccctgtccaggagctacctcgtctacatgagaaagtcag 243
Query: 764 gagctcgatgttcttttgctgagcc 788
||||||||||||||| |||||||||
Sbjct: 244 gagctcgatgttcttctgctgagcc 268
Score = 46.1 bits (23), Expect = 0.006
Identities = 39/43 (90%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 890 gatgttaaatgttagttttttaagcgtcgctgcggctatgttg 932
||||||||||||||| ||||||||| ||||||| | |||||||
Sbjct: 443 gatgttaaatgttag-tttttaagcatcgctgcagttatgttg 484
>gb|BF586992.1|BF586992 FM1_32_A01.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 522
Score = 339 bits (171), Expect = 3e-091
Identities = 225/243 (92%)
Strand = Plus / Plus
Query: 546 ctgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatca 605
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 ctgcaggagctggtgcattcgctctcttacgtgtaccaaaggagcacaacagccatatca 60
Query: 606 gtcgttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaag 665
|| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |||
Sbjct: 61 gttgttgctcccatctgctatgcacatctggcagcagctcaggtcggccagttcattaag 120
Query: 666 ttcgatgagatgtcggagacgtcctccagtcatggcgggcatacttcggcgggcagcgtt 725
|||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||
Sbjct: 121 ttcgatgagatgtcggagacatcctccagccatggtggccatacttcggcgggcagcgtc 180
Query: 726 ccggtccaggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctga 785
|| ||||||||||| || || || ||||||||||| ||||||||||||||||| ||||||
Sbjct: 181 cctgtccaggagctacctcgtctacatgagaaagtcaggagctcgatgttcttctgctga 240
Query: 786 gcc 788
|||
Sbjct: 241 gcc 243
Score = 46.1 bits (23), Expect = 0.006
Identities = 39/43 (90%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 890 gatgttaaatgttagttttttaagcgtcgctgcggctatgttg 932
||||||||||||||| ||||||||| ||||||| | |||||||
Sbjct: 418 gatgttaaatgttag-tttttaagcatcgctgcagttatgttg 459
>gb|DN551859.1|DN551859 pSPR-RT-MR-H1_C07_C263 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 1523
Score = 335 bits (169), Expect = 5e-090
Identities = 603/745 (80%), Gaps = 2/745 (0%)
Strand = Plus / Minus
Query: 42 gttagttctcgtgaatggcctcttatctcgaaatacagagcatctgtccgcacccaatca 101
|||||||||||| |||||||||||||||| ||||| |||||||| || | |||||||||
Sbjct: 1046 gttagttctcgtcaatggcctcttatctctaaatatagagcatcagtgcacacccaatcc 987
Query: 102 ccaaaaatggaaatgattgactcattgtttaagccacgggaagctgaagatgatggtctg 161
| | | | |||||||| ||| |||||||||||||||| |||| |||||||| ||
Sbjct: 986 gccagactagaaatgatgtcctccttgtttaagccacggggtactgatgatgatggcctc 927
Query: 162 atccgggagtgtctgattgacttctacaccagttctgggaagagaaagcctgaccaagtt 221
|| |||| | ||||||||||||||||| || ||||| ||| |||| || ||||| ||
Sbjct: 926 attagggaatcactgattgacttctacactagctctggcaagcgaaaaccagaccacatt 867
Query: 222 atcatattcagggacggtgttagcgaaagtcagtttaatcaggtgctgaacattgagttg 281
||||| |||||||| || || |||||||||||||||| ||||| | |||||||| ||
Sbjct: 866 atcattttcagggatggagtcagcgaaagtcagtttacccaggtcatcaacattgaactg 807
Query: 282 caacaaatcatcgaggcttgcaaatttcttgatgagaaatggaatcccaagttcacgttg 341
| || || || ||||| || || |||||||||||||| ||| ||||||||||| ||
Sbjct: 806 gatcagataattgaggcatgtaagtttcttgatgagaagtggtcacccaagttcactgtg 747
Query: 342 attattgcccagaagaatcatcacactaaattttt-cattcctggaaagccagataatgt 400
||| |||| || ||||| || ||||| || ||||| || || ||| ||||| |||||
Sbjct: 746 attgttgctcaaaagaaccaccacaccaagttttttcagacc-ggatcaccagacaatgt 688
Query: 401 cccaccaggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctacat 460
| || |||||||| |||||||| ||||| |||||||| |||||||| || ||||||||
Sbjct: 687 tcttcccggaactgtcgtggacaataaagtttgccatcctaagaactttgacttctacat 628
Query: 461 gtgtgcgcatgctggaatgatcgggactacgaggccaactcactaccacatcctgcatga 520
|||||| |||||||| ||||| || || || ||||| || || || || | ||||| ||
Sbjct: 627 gtgtgcacatgctgggatgattggaacaacaaggccgacccattatcatgttctgcacga 568
Query: 521 tgagataggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgta 580
||||||||| ||| | |||| || |||||||| | || ||||||||||||||||||||
Sbjct: 567 tgagataggtttctctgctgacgaaatgcaggagtttgttcattcgctctcttatgtgta 508
Query: 581 ccaaaggagcacaacagccatatcagtcgttgctcccatctgctacgcacatctggcagc 640
||||| |||||||||||||| ||||| |||||||| ||||||||||| || || || ||
Sbjct: 507 tcaaagaagcacaacagccatctcagtagttgctccaatctgctacgcccaccttgctgc 448
Query: 641 tgctcaggttggccagttcataaagttcgatgagatgtcggagacgtcctccagtcatgg 700
|| ||||| ||| |||| | || ||||| |||||||| || ||||||||||| || ||
Sbjct: 447 agcccaggtgggcacgttcctgaaattcgaggagatgtcagacacgtcctccagccaggg 388
Query: 701 cgggcatacttcggcgggcagcgttccggtccaggagctgccgcgcctgcatgagaaagt 760
|||||||| ||||||||||| | ||| || | ||||||||| |||||||||||||||||
Sbjct: 387 agggcatacctcggcgggcagtgctcccgtgccggagctgcctcgcctgcatgagaaagt 328
Query: 761 gaggagctcgatgttcttttgctga 785
|||||| || |||||||| ||||||
Sbjct: 327 gaggagttccatgttcttctgctga 303
>gb|BI074812.1|BI074812 IP1_16_G03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 511
Score = 327 bits (165), Expect = 1e-087
Identities = 189/197 (95%)
Strand = Plus / Plus
Query: 3 tctcctggacattctgatgtaccgtctgttgctgctgttgttagttctcgtgaatggcct 62
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 315 tctcctggacattctgatgtaccgtccattgctgctgttgttagttctcgtgaatggcct 374
Query: 63 cttatctcgaaatacagagcatctgtccgcacccaatcaccaaaaatggaaatgattgac 122
|||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||||
Sbjct: 375 cttatctcgaaatatagagcttctgtccgcacccaatcacctaagatggaaatgattgac 434
Query: 123 tcattgtttaagccacgggaagctgaagatgatggtctgatccgggagtgtctgattgac 182
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tctttgtttaagccacgggaaactgaagatgatggtctgatccgggagtgtctgattgac 494
Query: 183 ttctacaccagttctgg 199
|||||||||||||||||
Sbjct: 495 ttctacaccagttctgg 511
>gb|BF656879.1|BF656879 OV2_22_B07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 193
Score = 280 bits (141), Expect = 2e-073
Identities = 180/193 (93%)
Strand = Plus / Plus
Query: 546 ctgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatca 605
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 1 ctgcaggagctggtgcattcgctatcttacgtgtaccaaaggagcacaacagccatatca 60
Query: 606 gtcgttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaag 665
|| ||||||||||| ||||| |||||||||||||| |||||||| ||||||||||| |||
Sbjct: 61 gttgttgctcccatttgctatgcacatctggcagcagctcaggtcggccagttcattaag 120
Query: 666 ttcgatgagatgtcggagacgtcctccagtcatggcgggcatacttcggcgggcagcgtt 725
|||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct: 121 ttcgatgagatgtcggagacatcctccagccatggcggccatacttcggcgggcagcgtc 180
Query: 726 ccggtccaggagc 738
|| ||||||||||
Sbjct: 181 cctgtccaggagc 193
>gb|BF176662.1|BF176662 EM1_1_E11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 627
Score = 250 bits (126), Expect = 2e-064
Identities = 315/378 (83%)
Strand = Plus / Plus
Query: 408 ggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgtgcg 467
|||||||| |||||||| ||||| |||||||| |||||||| || ||||||||||||||
Sbjct: 13 ggaactgtcgtggacaataaagtttgccatcctaagaactttgacttctacatgtgtgca 72
Query: 468 catgctggaatgatcgggactacgaggccaactcactaccacatcctgcatgatgagata 527
|||||||| ||||| || || || ||||| || || || || | ||||| |||||||||
Sbjct: 73 catgctgggatgattggaacaacaaggccgacccattatcatgttctgcacgatgagata 132
Query: 528 ggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaagg 587
|| ||| | |||| || |||||||| | || |||||||||||||||||||| ||||||
Sbjct: 133 ggtttctctgctgacgaaatgcaggagtttgttcattcgctctcttatgtgtatcaaagg 192
Query: 588 agcacaacagccatatcagtcgttgctcccatctgctacgcacatctggcagctgctcag 647
|||||||||||||| ||||| |||||||| |||||||| || || || || || || |||
Sbjct: 193 agcacaacagccatctcagtagttgctccaatctgctatgcccaccttgctgcagcccag 252
Query: 648 gttggccagttcataaagttcgatgagatgtcggagacgtcctccagtcatggcgggcat 707
|| ||| |||| | || ||||| |||||||| || ||||||||||| || || ||||||
Sbjct: 253 gtgggcacgttcctgaaattcgaggagatgtcagacacgtcctccagccagggagggcat 312
Query: 708 acttcggcgggcagcgttccggtccaggagctgccgcgcctgcatgagaaagtgaggagc 767
|| ||||||||||| | ||| || | ||||||||| |||||||||||||||||||||||
Sbjct: 313 acctcggcgggcagtgctcccgtgccggagctgcctcgcctgcatgagaaagtgaggagt 372
Query: 768 tcgatgttcttttgctga 785
|| |||||||| ||||||
Sbjct: 373 tccatgttcttctgctga 390
>gb|CW234191.1|CW234191 104_687_11213849_148_37382_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213849, DNA
sequence
Length = 712
Score = 246 bits (124), Expect = 3e-063
Identities = 166/180 (92%)
Strand = Plus / Plus
Query: 609 gttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaagttc 668
||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 119 gttgctcccatctgctatgcacatctggcagcagctcaggtcggccagttcattaagttc 178
Query: 669 gatgagatgtcggagacgtcctccagtcatggcgggcatacttcggcgggcagcgttccg 728
||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 179 gatgagatgtcggagacatcctccagccatggcggccatacttcggcgggcagcgtccct 238
Query: 729 gtccaggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctgagcc 788
||||||||||| || || || ||||||||||| |||||||||||||||||||||||||||
Sbjct: 239 gtccaggagctacctcgtctacatgagaaagtcaggagctcgatgttcttttgctgagcc 298
Score = 54.0 bits (27), Expect = 3e-005
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 936 cctcaggaagacttggaacctggttaggatgtcgttaaa 974
||||||||||||||||||||| | |||||||||||||||
Sbjct: 540 cctcaggaagacttggaaccttg-taggatgtcgttaaa 577
Score = 48.1 bits (24), Expect = 0.002
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 890 gatgttaaatgttagttttttaagcgtcgctgcggctatgttgg 933
||||||||||||||| ||||||||| ||||||| | ||||||||
Sbjct: 473 gatgttaaatgttag-tttttaagcatcgctgcagttatgttgg 515
>gb|CW253695.1|CW253695 104_717_11225238_116_35111_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225238, DNA
sequence
Length = 745
Score = 246 bits (124), Expect = 3e-063
Identities = 166/180 (92%)
Strand = Plus / Minus
Query: 609 gttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaagttc 668
||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 738 gttgctcccatctgctatgcacatctggcagcagctcaggtcggccagttcattaagttc 679
Query: 669 gatgagatgtcggagacgtcctccagtcatggcgggcatacttcggcgggcagcgttccg 728
||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 678 gatgagatgtcggagacatcctccagccatggcggccatacttcggcgggcagcgtccct 619
Query: 729 gtccaggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctgagcc 788
||||||||||| || || || ||||||||||| |||||||||||||||||||||||||||
Sbjct: 618 gtccaggagctacctcgtctacatgagaaagtcaggagctcgatgttcttttgctgagcc 559
Score = 54.0 bits (27), Expect = 3e-005
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Minus
Query: 936 cctcaggaagacttggaacctggttaggatgtcgttaaa 974
||||||||||||||||||||| | |||||||||||||||
Sbjct: 317 cctcaggaagacttggaaccttg-taggatgtcgttaaa 280
Score = 48.1 bits (24), Expect = 0.002
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 890 gatgttaaatgttagttttttaagcgtcgctgcggctatgttgg 933
|||||||||||||||| |||||||| ||||||| | ||||||||
Sbjct: 384 gatgttaaatgttagt-ttttaagcatcgctgcagttatgttgg 342
>gb|CW253696.1|CW253696 104_717_11225238_148_35107_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225238, DNA
sequence
Length = 665
Score = 246 bits (124), Expect = 3e-063
Identities = 166/180 (92%)
Strand = Plus / Plus
Query: 609 gttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaagttc 668
||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 321 gttgctcccatctgctatgcacatctggcagcagctcaggtcggccagttcattaagttc 380
Query: 669 gatgagatgtcggagacgtcctccagtcatggcgggcatacttcggcgggcagcgttccg 728
||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 381 gatgagatgtcggagacatcctccagccatggcggccatacttcggcgggcagcgtccct 440
Query: 729 gtccaggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctgagcc 788
||||||||||| || || || ||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 gtccaggagctacctcgtctacatgagaaagtcaggagctcgatgttcttttgctgagcc 500
Score = 119 bits (60), Expect = 5e-025
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 513 ctgcatgatgagataggcttcagtcctgatgatctgcaggagctggtgcattcgctctct 572
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 16 ctgcatgatgagataggcttcaatcctgatgatctgcaggagctggtgcattcgctctct 75
Query: 573 tatgtgta 580
|| |||||
Sbjct: 76 tacgtgta 83
Score = 60.0 bits (30), Expect = 4e-007
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 578 gtaccaaaggagcacaacagccatatcagt 607
||||||||||||||||||||||||||||||
Sbjct: 185 gtaccaaaggagcacaacagccatatcagt 214
>gb|CW443602.1|CW443602 fsbb001f163m16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f163m16, DNA
sequence
Length = 725
Score = 246 bits (124), Expect = 3e-063
Identities = 166/180 (92%)
Strand = Plus / Plus
Query: 609 gttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaagttc 668
||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 390 gttgctcccatctgctatgcacatctggcagcagctcaggtcggccagttcattaagttc 449
Query: 669 gatgagatgtcggagacgtcctccagtcatggcgggcatacttcggcgggcagcgttccg 728
||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 450 gatgagatgtcggagacatcctccagccatggcggccatacttcggcgggcagcgtccct 509
Query: 729 gtccaggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctgagcc 788
||||||||||| || || || ||||||||||| |||||||||||||||||||||||||||
Sbjct: 510 gtccaggagctacctcgtctacatgagaaagtcaggagctcgatgttcttttgctgagcc 569
Score = 147 bits (74), Expect = 2e-033
Identities = 92/98 (93%)
Strand = Plus / Plus
Query: 483 gggactacgaggccaactcactaccacatcctgcatgatgagataggcttcagtcctgat 542
|||||||||||||||||||| || || || |||||||||||||||||||||| |||||||
Sbjct: 55 gggactacgaggccaactcattatcatatactgcatgatgagataggcttcaatcctgat 114
Query: 543 gatctgcaggagctggtgcattcgctctcttatgtgta 580
|||||||||||||||||||||||||||||||| |||||
Sbjct: 115 gatctgcaggagctggtgcattcgctctcttacgtgta 152
Score = 60.0 bits (30), Expect = 4e-007
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 578 gtaccaaaggagcacaacagccatatcagt 607
||||||||||||||||||||||||||||||
Sbjct: 254 gtaccaaaggagcacaacagccatatcagt 283
>gb|CW452021.1|CW452021 fsbb001f192f20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f192f20, DNA
sequence
Length = 684
Score = 246 bits (124), Expect = 3e-063
Identities = 166/180 (92%)
Strand = Plus / Minus
Query: 609 gttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaagttc 668
||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 613 gttgctcccatctgctatgcacatctggcagcagctcaggtcggccagttcattaagttc 554
Query: 669 gatgagatgtcggagacgtcctccagtcatggcgggcatacttcggcgggcagcgttccg 728
||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 553 gatgagatgtcggagacatcctccagccatggcggccatacttcggcgggcagcgtccct 494
Query: 729 gtccaggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctgagcc 788
||||||||||| || || || ||||||||||| |||||||||||||||||||||||||||
Sbjct: 493 gtccaggagctacctcgtctacatgagaaagtcaggagctcgatgttcttttgctgagcc 434
Score = 54.0 bits (27), Expect = 3e-005
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Minus
Query: 936 cctcaggaagacttggaacctggttaggatgtcgttaaa 974
||||||||||||||||||||| | |||||||||||||||
Sbjct: 192 cctcaggaagacttggaaccttg-taggatgtcgttaaa 155
Score = 48.1 bits (24), Expect = 0.002
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 890 gatgttaaatgttagttttttaagcgtcgctgcggctatgttgg 933
||||||||||||||| ||||||||| ||||||| | ||||||||
Sbjct: 259 gatgttaaatgttag-tttttaagcatcgctgcagttatgttgg 217
>gb|BF421511.1|BF421511 FM1_8_F10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 624
Score = 240 bits (121), Expect = 2e-061
Identities = 307/369 (83%)
Strand = Plus / Plus
Query: 417 gtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctgga 476
|||||||| ||||| |||||||| |||||||| || |||||||||||||| ||||||||
Sbjct: 4 gtggacaataaagtttgccatcctaagaactttgacttctacatgtgtgcacatgctggg 63
Query: 477 atgatcgggactacgaggccaactcactaccacatcctgcatgatgagataggcttcagt 536
||||| || || || ||||| || || || || | ||||| ||||||||||| ||| |
Sbjct: 64 atgattggaacaacaaggccgacccattatcatgttctgcacgatgagataggtttctct 123
Query: 537 cctgatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaaca 596
|||| || |||||||| | || |||||||||||||||||||| ||||| |||||||||
Sbjct: 124 gctgacgaaatgcaggagtttgttcattcgctctcttatgtgtatcaaagaagcacaaca 183
Query: 597 gccatatcagtcgttgctcccatctgctacgcacatctggcagctgctcaggttggccag 656
||||| ||||| |||||||| ||||||||||| || || || || || ||||| ||| |
Sbjct: 184 gccatctcagtagttgctccaatctgctacgcccaccttgctgcagcccaggtgggcacg 243
Query: 657 ttcataaagttcgatgagatgtcggagacgtcctccagtcatggcgggcatacttcggcg 716
||| | || ||||| |||||||| || ||||||||||| || || |||||||| ||||||
Sbjct: 244 ttcctgaaattcgaggagatgtcagacacgtcctccagccagggagggcatacctcggcg 303
Query: 717 ggcagcgttccggtccaggagctgccgcgcctgcatgagaaagtgaggagctcgatgttc 776
||||| | ||| || | ||||||||| ||||||||||||||||||||||| || ||||||
Sbjct: 304 ggcagtgctcccgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttc 363
Query: 777 ttttgctga 785
|| ||||||
Sbjct: 364 ttctgctga 372
>gb|BI211863.1|BI211863 IP1_62_D02.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 478
Score = 228 bits (115), Expect = 8e-058
Identities = 157/171 (91%)
Strand = Plus / Plus
Query: 618 atctgctacgcacatctggcagctgctcaggttggccagttcataaagttcgatgagatg 677
|||||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 1 atctgctatgcacatctggcagcagctcaggtcggccagttcattaagttcgatgagatg 60
Query: 678 tcggagacgtcctccagtcatggcgggcatacttcggcgggcagcgttccggtccaggag 737
|||||||| |||||||| |||||||| |||||||||||||||||||| || |||||||||
Sbjct: 61 tcggagacatcctccagccatggcggccatacttcggcgggcagcgtccctgtccaggag 120
Query: 738 ctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctgagcc 788
|| || || || ||||||||||| |||||||||||||||||||||||||||
Sbjct: 121 ctacctcgtctacatgagaaagtcaggagctcgatgttcttttgctgagcc 171
Score = 54.0 bits (27), Expect = 3e-005
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 936 cctcaggaagacttggaacctggttaggatgtcgttaaa 974
||||||||||||||||||||| | |||||||||||||||
Sbjct: 413 cctcaggaagacttggaaccttg-taggatgtcgttaaa 450
Score = 48.1 bits (24), Expect = 0.002
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 890 gatgttaaatgttagttttttaagcgtcgctgcggctatgttgg 933
||||||||||||||| ||||||||| ||||||| | ||||||||
Sbjct: 346 gatgttaaatgttag-tttttaagcatcgctgcagttatgttgg 388
>gb|CD228133.1|CD228133 CCC1_6_E11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_6_E11_A007 3', mRNA sequence
Length = 638
Score = 222 bits (112), Expect = 5e-056
Identities = 298/360 (82%)
Strand = Plus / Plus
Query: 426 aaagtctgccatccaaagaacttcgatttctacatgtgtgcgcatgctggaatgatcggg 485
||||| |||||||| |||||||| || |||||||||||||| |||||||| ||||| ||
Sbjct: 3 aaagtttgccatcctaagaactttgacttctacatgtgtgcacatgctgggatgattgga 62
Query: 486 actacgaggccaactcactaccacatcctgcatgatgagataggcttcagtcctgatgat 545
|| || ||||| || || || || | ||||| ||||||||||| ||| | |||| ||
Sbjct: 63 acaacaaggccgacccattatcatgttctgcacgatgagataggtttctctgctgacgaa 122
Query: 546 ctgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatca 605
|||||||| | || |||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct: 123 atgcaggagtttgttcattcgctctcttacgtgtatcaaaggagcacaacagccatctca 182
Query: 606 gtcgttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaag 665
|| |||||||| |||||||| || || || || || || ||||| ||| |||| | ||
Sbjct: 183 gtagttgctccaatctgctatgcccaccttgctgcagcccaggtgggcacgttcctgaaa 242
Query: 666 ttcgatgagatgtcggagacgtcctccagtcatggcgggcatacttcggcgggcagcgtt 725
||||| |||||||| || ||||||||||| || || |||||||| ||||||||||| | |
Sbjct: 243 ttcgaggagatgtcagacacgtcctccagccagggagggcatacctcggcgggcagtgct 302
Query: 726 ccggtccaggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctga 785
|| || | ||||||||| ||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 303 cccgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgctga 362
>gb|BI140331.1|BI140331 IP1_52_A07.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 465
Score = 212 bits (107), Expect = 5e-053
Identities = 146/159 (91%)
Strand = Plus / Plus
Query: 630 catctggcagctgctcaggttggccagttcataaagttcgatgagatgtcggagacgtcc 689
||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct: 1 catctggcagcagctcaggtcggccagttcattaagttcgatgagatgtcggagacatcc 60
Query: 690 tccagtcatggcgggcatacttcggcgggcagcgttccggtccaggagctgccgcgcctg 749
||||| |||||||| |||||||||||||||||||| || ||||||||||| || || ||
Sbjct: 61 tccagccatggcggccatacttcggcgggcagcgtccctgtccaggagctacctcgtcta 120
Query: 750 catgagaaagtgaggagctcgatgttcttttgctgagcc 788
||||||||||| |||||||||||||||||||||||||||
Sbjct: 121 catgagaaagtcaggagctcgatgttcttttgctgagcc 159
Score = 54.0 bits (27), Expect = 3e-005
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 936 cctcaggaagacttggaacctggttaggatgtcgttaaa 974
||||||||||||||||||||| | |||||||||||||||
Sbjct: 401 cctcaggaagacttggaaccttg-taggatgtcgttaaa 438
Score = 48.1 bits (24), Expect = 0.002
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 890 gatgttaaatgttagttttttaagcgtcgctgcggctatgttgg 933
||||||||||||||| ||||||||| ||||||| | ||||||||
Sbjct: 334 gatgttaaatgttag-tttttaagcatcgctgcagttatgttgg 376
>gb|BG051562.1|BG051562 FM1_58_A07.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 360
Score = 198 bits (100), Expect = 7e-049
Identities = 229/272 (84%)
Strand = Plus / Plus
Query: 514 tgcatgatgagataggcttcagtcctgatgatctgcaggagctggtgcattcgctctctt 573
|||| ||||||||||| ||| | |||| || |||||||| | || |||||||||||||
Sbjct: 2 tgcaggatgagataggtttctctgctgacgaaatgcaggagtttgttcattcgctctctt 61
Query: 574 atgtgtaccaaaggagcacaacagccatatcagtcgttgctcccatctgctacgcacatc 633
||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||| || |
Sbjct: 62 atgtgtatcaaagaagcacaacagccatctcagtagttgctccaatctgctacgcccacc 121
Query: 634 tggcagctgctcaggttggccagttcataaagttcgatgagatgtcggagacgtcctcca 693
| || || || ||||| ||| |||| | || ||||| |||||||| || ||||||||||
Sbjct: 122 ttgctgcagcccaggtgggcacgttcctgaaattcgaggagatgtcagacacgtcctcca 181
Query: 694 gtcatggcgggcatacttcggcgggcagcgttccggtccaggagctgccgcgcctgcatg 753
| || || |||||||| ||||||||||| | ||| || | ||||||||| ||||||||||
Sbjct: 182 gccagggagggcatacctcggcgggcagtgctcccgtgccggagctgcctcgcctgcatg 241
Query: 754 agaaagtgaggagctcgatgttcttttgctga 785
||||||||||||| ||||||||||| ||||||
Sbjct: 242 agaaagtgaggagttcgatgttcttctgctga 273
>gb|BM324187.1|BM324187 PIC1_25_D06.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 512
Score = 194 bits (98), Expect = 1e-047
Identities = 116/122 (95%)
Strand = Plus / Plus
Query: 3 tctcctggacattctgatgtaccgtctgttgctgctgttgttagttctcgtgaatggcct 62
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 387 tctcctggacattctgatgtaccgtccattgctgctgttgttagttctcgtgaatggcct 446
Query: 63 cttatctcgaaatacagagcatctgtccgcacccaatcaccaaaaatggaaatgattgac 122
|||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||||
Sbjct: 447 cttatctcgaaatatagagcttctgtccgcacccaatcacctaagatggaaatgattgac 506
Query: 123 tc 124
||
Sbjct: 507 tc 508
>gb|BF481845.1|BF481845 FM1_22_B03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 550
Score = 192 bits (97), Expect = 4e-047
Identities = 229/273 (83%)
Strand = Plus / Plus
Query: 513 ctgcatgatgagataggcttcagtcctgatgatctgcaggagctggtgcattcgctctct 572
||||| ||||||||||| ||| | |||| || |||||||| | || ||||||||||||
Sbjct: 22 ctgcacgatgagataggtttctctgctgacgaaatgcaggagtttgttcattcgctctct 81
Query: 573 tatgtgtaccaaaggagcacaacagccatatcagtcgttgctcccatctgctacgcacat 632
|||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct: 82 tatgtgtatcaaagaagcacaacagccatctcagtagttgctccaatctgctacgcccac 141
Query: 633 ctggcagctgctcaggttggccagttcataaagttcgatgagatgtcggagacgtcctcc 692
|| || || || ||||| ||| |||| | || ||||| |||||||| || |||||||||
Sbjct: 142 cttgctgcagcccaggtgggcacgttcctgaaattcgaggagatgtcagacacgtcctcc 201
Query: 693 agtcatggcgggcatacttcggcgggcagcgttccggtccaggagctgccgcgcctgcat 752
|| || || |||||||| ||||||||||| | ||| || | ||||||||| |||||||||
Sbjct: 202 agccagggagggcatacctcggcgggcagtgctcccgtgccggagctgcctcgcctgcat 261
Query: 753 gagaaagtgaggagctcgatgttcttttgctga 785
|||||||||||||| || |||||||| ||||||
Sbjct: 262 gagaaagtgaggagttccatgttcttctgctga 294
>gb|BG050659.1|BG050659 FM1_71_B03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 532
Score = 192 bits (97), Expect = 4e-047
Identities = 229/273 (83%)
Strand = Plus / Plus
Query: 513 ctgcatgatgagataggcttcagtcctgatgatctgcaggagctggtgcattcgctctct 572
||||| ||||||||||| ||| | |||| || |||||||| | || ||||||||||||
Sbjct: 3 ctgcacgatgagataggtttctctgctgacgaaatgcaggagtttgttcattcgctctct 62
Query: 573 tatgtgtaccaaaggagcacaacagccatatcagtcgttgctcccatctgctacgcacat 632
|||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct: 63 tatgtgtatcaaagaagcacaacagccatctcagtagttgctccaatctgctacgcccac 122
Query: 633 ctggcagctgctcaggttggccagttcataaagttcgatgagatgtcggagacgtcctcc 692
|| || || || ||||| ||| |||| | || ||||| |||||||| || |||||||||
Sbjct: 123 cttgctgcagcccaggtgggcacgttcctgaaattcgaggagatgtcagacacgtcctcc 182
Query: 693 agtcatggcgggcatacttcggcgggcagcgttccggtccaggagctgccgcgcctgcat 752
|| || || |||||||| ||||||||||| | ||| || | ||||||||| |||||||||
Sbjct: 183 agccagggagggcatacctcggcgggcagtgctcccgtgccggagctgcctcgcctgcat 242
Query: 753 gagaaagtgaggagctcgatgttcttttgctga 785
|||||||||||||| || |||||||| ||||||
Sbjct: 243 gagaaagtgaggagttccatgttcttctgctga 275
>gb|BG557100.1|BG557100 EM1_42_F06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 543
Score = 192 bits (97), Expect = 4e-047
Identities = 229/273 (83%)
Strand = Plus / Plus
Query: 513 ctgcatgatgagataggcttcagtcctgatgatctgcaggagctggtgcattcgctctct 572
||||| ||||||||||| ||| | |||| || |||||||| | || ||||||||||||
Sbjct: 19 ctgcacgatgagataggtttctctgctgacgaaatgcaggagtttgttcattcgctctct 78
Query: 573 tatgtgtaccaaaggagcacaacagccatatcagtcgttgctcccatctgctacgcacat 632
|||||||| |||||||||||||||||||| ||||| |||||||| |||||||| || ||
Sbjct: 79 tatgtgtatcaaaggagcacaacagccatctcagtagttgctccaatctgctatgcccac 138
Query: 633 ctggcagctgctcaggttggccagttcataaagttcgatgagatgtcggagacgtcctcc 692
|| || || || ||||| ||| |||| | || ||||| |||||||| || |||||||||
Sbjct: 139 cttgctgcagcccaggtgggcacgttcctgaaattcgaggagatgtcagacacgtcctcc 198
Query: 693 agtcatggcgggcatacttcggcgggcagcgttccggtccaggagctgccgcgcctgcat 752
|| || || |||||||| ||||||||||| | ||| || | ||||||||| |||||||||
Sbjct: 199 agccagggagggcatacctcggcgggcagtgctcccgtgccggagctgcctcgcctgcat 258
Query: 753 gagaaagtgaggagctcgatgttcttttgctga 785
|||||||||||||| || |||||||| ||||||
Sbjct: 259 gagaaagtgaggagttccatgttcttctgctga 291
>gb|BG102640.1|BG102640 RHIZ2_35_E02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 324
Score = 188 bits (95), Expect = 7e-046
Identities = 203/239 (84%)
Strand = Plus / Plus
Query: 547 tgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatcag 606
|||||||| | || |||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct: 17 tgcaggagtttgttcattcgctctcttatgtgtatcaaagaagcacaacagccatctcag 76
Query: 607 tcgttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaagt 666
| |||||||| ||||||||||| || || || || || ||||| ||| |||| | || |
Sbjct: 77 tagttgctccaatctgctacgcccaccttgctgcagcccaggtgggcacgttcctgaaat 136
Query: 667 tcgatgagatgtcggagacgtcctccagtcatggcgggcatacttcggcgggcagcgttc 726
|||| |||||||| || ||||||||||| || || |||||||| ||||||||||| | ||
Sbjct: 137 tcgaggagatgtcagacacgtcctccagccagggagggcatacctcggcgggcagtgctc 196
Query: 727 cggtccaggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctga 785
| || | ||||||||| ||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 197 ccgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgctga 255
>gb|CF758348.1|CF758348 DSAF1_30_F09.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_30_F09_A011 3', mRNA sequence
Length = 585
Score = 188 bits (95), Expect = 7e-046
Identities = 203/239 (84%)
Strand = Plus / Plus
Query: 547 tgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatcag 606
|||||||| | || |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 28 tgcaggagtttgttcattcgctctcttatgtgtatcaaaggagcacaacagccatctcag 87
Query: 607 tcgttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaagt 666
| |||||||| |||||||| || || || || || || ||||| ||| |||| | || |
Sbjct: 88 tagttgctccaatctgctatgcccaccttgctgcagcccaggtgggcacgttcctgaaat 147
Query: 667 tcgatgagatgtcggagacgtcctccagtcatggcgggcatacttcggcgggcagcgttc 726
|||| |||||||| || ||||||||||| || || |||||||| ||||||||||| | ||
Sbjct: 148 tcgaggagatgtcagacacgtcctccagccagggagggcatacctcggcgggcagtgctc 207
Query: 727 cggtccaggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctga 785
| || | ||||||||| ||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 208 ccgtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgctga 266
>gb|BF421769.1|BF421769 FM1_16_D05.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 485
Score = 186 bits (94), Expect = 3e-045
Identities = 192/225 (85%)
Strand = Plus / Plus
Query: 561 cattcgctctcttatgtgtaccaaaggagcacaacagccatatcagtcgttgctcccatc 620
|||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||| |||
Sbjct: 10 cattcgctctcttatgtgtatcaaagaagcacaacagccatctcagtagttgctccaatc 69
Query: 621 tgctacgcacatctggcagctgctcaggttggccagttcataaagttcgatgagatgtcg 680
|||||||| || || || || || ||||| ||| |||| | || ||||| ||||||||
Sbjct: 70 tgctacgcccaccttgctgcagcncaggtgggcacgttcctgaaattcgaggagatgtca 129
Query: 681 gagacgtcctccagtcatggcgggcatacttcggcgggcagcgttccggtccaggagctg 740
|| ||||||||||| || || |||||||| ||||||||||| | ||| || | |||||||
Sbjct: 130 gacacgtcctccagccagggagggcatacctcggcgggcagtgctcccgtgccggagctg 189
Query: 741 ccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctga 785
|| ||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 190 cctcgcctgcatgagaaagtgaggagttccatgttcttctgctga 234
>gb|CF485311.1|CF485311 POL1_30_F05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_30_F05_A002 5', mRNA sequence
Length = 689
Score = 161 bits (81), Expect = 2e-037
Identities = 96/101 (95%)
Strand = Plus / Plus
Query: 3 tctcctggacattctgatgtaccgtctgttgctgctgttgttagttctcgtgaatggcct 62
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 588 tctcctggacattctgatgtaccgtccattgctgctgttgttagttctcgtgaatggcct 647
Query: 63 cttatctcgaaatacagagcatctgtccgcacccaatcacc 103
||||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 648 cttatctcggaatatagagcttctgtccgcacccaatcacc 688
>gb|BE366757.1|BE366757 PI1_3_G03.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 553
Score = 157 bits (79), Expect = 2e-036
Identities = 200/239 (83%), Gaps = 1/239 (0%)
Strand = Plus / Plus
Query: 547 tgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagccatatcag 606
|||||||| | || |||||||||||||||||| | |||||||||||||||||||| ||||
Sbjct: 15 tgcaggagtttgttcattcgctctcttatgtg-atcaaaggagcacaacagccatttcag 73
Query: 607 tcgttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaagt 666
| |||||||| || ||||| || || || || || || ||||| ||| |||| | || |
Sbjct: 74 tagttgctccaatttgctatgcccaccttgctgcagcccaggtgggcacgttcctgaaat 133
Query: 667 tcgatgagatgtcggagacgtcctccagtcatggcgggcatacttcggcgggcagcgttc 726
|||| |||||||| || ||||||||||| || || |||||||| ||||||||||| | ||
Sbjct: 134 tcgaggagatgtcagacacgtcctccagccagggagggcatacctcggcgggcagtgctc 193
Query: 727 cggtccaggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctga 785
| || | ||||||||| |||||||||||||||||||||| || ||||| |||||||||
Sbjct: 194 ccgtgccggagctgccttgcctgcatgagaaagtgaggagttccatgtttttttgctga 252
>gb|CW452022.1|CW452022 fsbb001f192f20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f192f20, DNA
sequence
Length = 703
Score = 147 bits (74), Expect = 2e-033
Identities = 92/98 (93%)
Strand = Plus / Plus
Query: 483 gggactacgaggccaactcactaccacatcctgcatgatgagataggcttcagtcctgat 542
|||||||||||||||||||| || || || |||||||||||||||||||||| |||||||
Sbjct: 457 gggactacgaggccaactcattatcatatactgcatgatgagataggcttcaatcctgat 516
Query: 543 gatctgcaggagctggtgcattcgctctcttatgtgta 580
|||||||||||||||||||||||||||||||| |||||
Sbjct: 517 gatctgcaggagctggtgcattcgctctcttacgtgta 554
Score = 91.7 bits (46), Expect = 1e-016
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 406 caggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgtg 465
|||||||||| |||||||||||||| || ||||||| |||||| || ||||||||||||
Sbjct: 60 caggaactgttgtggacaacaaagtttgtcatccaaggaactttgacttctacatgtgtt 119
Query: 466 cgcatgctggaatgatcg 483
| ||||||||||||||||
Sbjct: 120 cacatgctggaatgatcg 137
Score = 60.0 bits (30), Expect = 4e-007
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 578 gtaccaaaggagcacaacagccatatcagt 607
||||||||||||||||||||||||||||||
Sbjct: 656 gtaccaaaggagcacaacagccatatcagt 685
>gb|CD228245.1|CD228245 CCC1_6_E11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_6_E11_A007 5', mRNA sequence
Length = 599
Score = 133 bits (67), Expect = 4e-029
Identities = 268/335 (80%)
Strand = Plus / Plus
Query: 42 gttagttctcgtgaatggcctcttatctcgaaatacagagcatctgtccgcacccaatca 101
|||||||||||| |||||||||||||||| ||||| |||||||| || | |||||||||
Sbjct: 263 gttagttctcgtcaatggcctcttatctctaaatatagagcatcagtgcacacccaatcc 322
Query: 102 ccaaaaatggaaatgattgactcattgtttaagccacgggaagctgaagatgatggtctg 161
| | | | |||||||| ||| |||||||||||||||| |||| |||||||| ||
Sbjct: 323 gccagactagaaatgatgtcctccttgtttaagccacggggtactgatgatgatggcctc 382
Query: 162 atccgggagtgtctgattgacttctacaccagttctgggaagagaaagcctgaccaagtt 221
|| |||| | ||||||||||||||||| || ||||| ||| |||| || ||||| ||
Sbjct: 383 attagggaatcactgattgacttctacactagctctggcaagcgaaaaccagaccacatt 442
Query: 222 atcatattcagggacggtgttagcgaaagtcagtttaatcaggtgctgaacattgagttg 281
||||| |||||||| || || |||||||||||||||| ||||| | |||||||| ||
Sbjct: 443 atcattttcagggatggagtcagcgaaagtcagtttacccaggtcatcaacattgaactg 502
Query: 282 caacaaatcatcgaggcttgcaaatttcttgatgagaaatggaatcccaagttcacgttg 341
| || || || ||||| || || |||||||||||||| ||| ||||||||||| ||
Sbjct: 503 gatcagataattgaggcatgtaagtttcttgatgagaagtggtcacccaagttcactgtg 562
Query: 342 attattgcccagaagaatcatcacactaaattttt 376
||| |||| || ||||| || ||||| || |||||
Sbjct: 563 attgttgctcaaaagaaccaccacaccaagttttt 597
>gb|CL153692.1|CL153692 104_338_10780894_114_31369_142 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780894, DNA
sequence
Length = 674
Score = 117 bits (59), Expect = 2e-024
Identities = 146/175 (83%)
Strand = Plus / Plus
Query: 611 tgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaagttcga 670
||||||||||||||| || || || || || || ||||| ||| |||| | || |||||
Sbjct: 1 tgctcccatctgctatgcccaccttgctgcagcccaggtgggcacgttcctgaaattcga 60
Query: 671 tgagatgtcggagacgtcctccagtcatggcgggcatacttcggcgggcagcgttccggt 730
|||||||| || ||||||||||| || || |||||||| ||||||||||| | ||| ||
Sbjct: 61 ggagatgtcagacacgtcctccagccagggagggcatacctcggcgggcagtgctcccgt 120
Query: 731 ccaggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctga 785
| ||||||||| ||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 121 gccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgctga 175
>gb|CL174610.1|CL174610 104_379_10891763_116_31769_131 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891763, DNA
sequence
Length = 743
Score = 113 bits (57), Expect = 3e-023
Identities = 147/177 (83%)
Strand = Plus / Plus
Query: 609 gttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaagttc 668
|||||||| |||||||| || || || || || || ||||| ||| |||| | || |||
Sbjct: 303 gttgctccaatctgctatgcccaccttgctgcagcccaggtgggcacgttcctgaaattc 362
Query: 669 gatgagatgtcggagacgtcctccagtcatggcgggcatacttcggcgggcagcgttccg 728
|| |||||||| || ||||||||||| || || |||||||| ||||||||||| | |||
Sbjct: 363 gaggagatgtcagacacgtcctccagccagggagggcatacctcggcgggcagtgctccc 422
Query: 729 gtccaggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctga 785
|| | ||||||||| ||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 423 gtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgctga 479
Score = 48.1 bits (24), Expect = 0.002
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 513 ctgcatgatgagataggcttcagtcctgatgatctgcaggagctggtgcattcgctctct 572
||||| ||||||||||| ||| | |||| || |||||||| | || ||||||||||||
Sbjct: 18 ctgcacgatgagataggtttctctgctgacgaaatgcaggagtttgttcattcgctctct 77
Query: 573 tatgtgta 580
||||||||
Sbjct: 78 tatgtgta 85
Score = 44.1 bits (22), Expect = 0.025
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 582 caaaggagcacaacagccatatcagt 607
|||||||||||||||||||| |||||
Sbjct: 179 caaaggagcacaacagccatctcagt 204
>gb|CW041427.1|CW041427 104_274_10506544_114_30470 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506544, DNA
sequence
Length = 700
Score = 113 bits (57), Expect = 3e-023
Identities = 147/177 (83%)
Strand = Plus / Minus
Query: 609 gttgctcccatctgctacgcacatctggcagctgctcaggttggccagttcataaagttc 668
|||||||| |||||||| || || || || || || ||||| ||| |||| | || |||
Sbjct: 503 gttgctccaatctgctatgcccaccttgctgcagcccaggtgggcacgttcctgaaattc 444
Query: 669 gatgagatgtcggagacgtcctccagtcatggcgggcatacttcggcgggcagcgttccg 728
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Sbjct: 443 gaggagatgtcagacacgtcctccagccagggagggcatacctcggcgggcagtgctccc 384
Query: 729 gtccaggagctgccgcgcctgcatgagaaagtgaggagctcgatgttcttttgctga 785
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Sbjct: 383 gtgccggagctgcctcgcctgcatgagaaagtgaggagttccatgttcttctgctga 327
Score = 44.1 bits (22), Expect = 0.025
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 582 caaaggagcacaacagccatatcagt 607
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Sbjct: 627 caaaggagcacaacagccatctcagt 602
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 248,892
Number of Sequences: 832831
Number of extensions: 248892
Number of successful extensions: 68390
Number of sequences better than 0.5: 89
Number of HSP's better than 0.5 without gapping: 88
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 68087
Number of HSP's gapped (non-prelim): 266
length of query: 1028
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1008
effective length of database: 474,703,049
effective search space: 478500673392
effective search space used: 478500673392
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)