BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404725.2.2
(910 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW333518.1|CW333518 104_831_11481987_116_36043_006 Sorgh... 444 e-123
gb|CW333499.1|CW333499 104_831_11481987_148_36044_006 Sorgh... 422 e-116
gb|CW347590.1|CW347590 fsbb001f007i24k0 Sorghum methylation... 343 2e-092
gb|CF480672.1|CF480672 POL1_67_E06.b1_A002 Pollen Sorghum b... 343 2e-092
gb|CF489723.1|CF489723 POL1_59_F09.b1_A002 Pollen Sorghum b... 307 1e-081
gb|BG047687.1|BG047687 OV1_26_F01.b1_A002 Ovary 1 (OV1) Sor... 268 8e-070
gb|CW070516.1|CW070516 104_321_10526807_1_30090 Sorghum met... 260 2e-067
gb|BG048012.1|BG048012 OV1_26_F01.g1_A002 Ovary 1 (OV1) Sor... 246 3e-063
gb|CF486575.1|CF486575 POL1_38_B08.g1_A002 Pollen Sorghum b... 214 1e-053
gb|CF484415.1|CF484415 POL1_25_E03.b1_A002 Pollen Sorghum b... 212 4e-053
gb|BG464520.1|BG464520 EM1_70_G05.g1_A002 Embryo 1 (EM1) So... 208 7e-052
gb|CF484496.1|CF484496 POL1_25_E03.g1_A002 Pollen Sorghum b... 151 1e-034
gb|CW347589.1|CW347589 fsbb001f007i24f0 Sorghum methylation... 101 1e-019
gb|CF484277.1|CF484277 POL1_4_F09.b1_A002 Pollen Sorghum bi... 100 4e-019
gb|CW043993.1|CW043993 104_279_10508694_115_30247 Sorghum m... 80 4e-013
gb|CF486496.1|CF486496 POL1_38_B08.b1_A002 Pollen Sorghum b... 80 4e-013
gb|CW045891.1|CW045891 104_282_10509838_114_30229 Sorghum m... 62 1e-007
gb|CW478498.1|CW478498 fsbb001f236g18f0 Sorghum methylation... 58 1e-006
gb|CF481282.1|CF481282 POL1_71_C02.b1_A002 Pollen Sorghum b... 58 1e-006
gb|CL189048.1|CL189048 104_406_10902017_116_32471_079 Sorgh... 42 0.088
gb|CL190769.1|CL190769 104_409_10906310_114_32491_061 Sorgh... 42 0.088
gb|CL190770.1|CL190770 104_409_10906310_116_32499_061 Sorgh... 42 0.088
gb|CW472012.1|CW472012 fsbb001f226i03k0 Sorghum methylation... 42 0.088
gb|CW477133.1|CW477133 fsbb001f234f06f0 Sorghum methylation... 42 0.088
gb|CD208762.1|CD208762 HS1_44_C05.b1_A012 Heat-shocked seed... 42 0.088
gb|CD425186.1|CD425186 SA1_11_E10.b1_A002 Salicylic acid-tr... 42 0.088
gb|CD427044.1|CD427044 SA1_17_G03.b1_A002 Salicylic acid-tr... 42 0.088
gb|BZ691858.1|BZ691858 SP__Ba0013H08.r SP__Ba Sorghum propi... 40 0.35
gb|CW785594.1|CW785594 SP__Ba0013H08.r SP__Ba Sorghum propi... 40 0.35
gb|CX611383.1|CX611383 ANR1_24_G11.b1_A002 Anaerobic roots ... 40 0.35
>gb|CW333518.1|CW333518 104_831_11481987_116_36043_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481987, DNA
sequence
Length = 600
Score = 444 bits (224), Expect = e-123
Identities = 287/308 (93%)
Strand = Plus / Minus
Query: 365 gctctagacggcgcggtaggacggtggcatcggcaggccgacgaccttgccgcagcggag 424
||||||||||| | |||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 519 gctctagacggagaggtaggacggcggcagtggcaggccgacgaccttgccgcagcggag 460
Query: 425 gctggtctccggcatgttgtactcgtccctgagcgaccgctccggcgagatgacgctcac 484
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 459 gctggtctctggcatgttgtactcgtccctgagcgaccgctccggcgaggtgacgctgat 400
Query: 485 gtacagctgctcgccgaggtactgcctctcccagatgttggagcggacgctccacatgcc 544
||||||||||||||||||||| | |||||||||||||||||| |||| |||||||||||
Sbjct: 399 gtacagctgctcgccgaggtaattcctctcccagatgttggaccggatactccacatgcc 340
Query: 545 cgcgttgtcgaacgtcatcatcaccgccgtccacgaccttgggtacacctggatcgtgtg 604
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 339 cgcgttgtcgaacgtcatcatcaccgccgtccacgacctcgggtacacctggaccgtgtg 280
Query: 605 ccggctcaccgtgtccaggaggttgtacgtactccgcgacgctgccgtccatttgccggg 664
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||
Sbjct: 279 ccggctcaccgtgtccaggaggttgtacgtactccggcacgctggcgtccatttgcccgg 220
Query: 665 ccccatgc 672
|||||||
Sbjct: 219 gcccatgc 212
Score = 79.8 bits (40), Expect = 4e-013
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 711 tcgatgctcttctcggggttctcgaagnccaccncgatgaacnnncggaactcggcgctg 770
|||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |
Sbjct: 75 tcgatgctcttctcggggttctcgaacaccacctcgatgaaggtgcggaactcggcgcgg 16
Query: 771 atgacgttggg 781
| |||||||||
Sbjct: 15 aggacgttggg 5
Score = 42.1 bits (21), Expect = 0.088
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 ttgtgtacagcaccgtgcgcg 354
|||||||||||||||||||||
Sbjct: 576 ttgtgtacagcaccgtgcgcg 556
>gb|CW333499.1|CW333499 104_831_11481987_148_36044_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11481987, DNA
sequence
Length = 661
Score = 422 bits (213), Expect = e-116
Identities = 276/297 (92%)
Strand = Plus / Plus
Query: 365 gctctagacggcgcggtaggacggtggcatcggcaggccgacgaccttgccgcagcggag 424
||||||||||| | |||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 345 gctctagacggagaggtaggacggcggcagtggcaggccgacgaccttgccgcagcggag 404
Query: 425 gctggtctccggcatgttgtactcgtccctgagcgaccgctccggcgagatgacgctcac 484
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 405 gctggtctctggcatgttgtactcgtccctgagcgaccgctccggcgaggtgacgctgat 464
Query: 485 gtacagctgctcgccgaggtactgcctctcccagatgttggagcggacgctccacatgcc 544
||||||||||||||||||||| | |||||||||||||||||| |||| |||||||||||
Sbjct: 465 gtacagctgctcgccgaggtaattcctctcccagatgttggaccggatactccacatgcc 524
Query: 545 cgcgttgtcgaacgtcatcatcaccgccgtccacgaccttgggtacacctggatcgtgtg 604
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 525 cgcgttgtcgaacgtcatcatcaccgccgtccacgacctcgggtacacctggaccgtgtg 584
Query: 605 ccggctcaccgtgtccaggaggttgtacgtactccgcgacgctgccgtccatttgcc 661
|||||||| ||||||||||||||||||||||||||| |||||| ||| ||||||||
Sbjct: 585 ccggctcaacgtgtccaggaggttgtacgtactccggcacgctggcgttcatttgcc 641
Score = 42.1 bits (21), Expect = 0.088
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 ttgtgtacagcaccgtgcgcg 354
|||||||||||||||||||||
Sbjct: 288 ttgtgtacagcaccgtgcgcg 308
>gb|CW347590.1|CW347590 fsbb001f007i24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007i24, DNA
sequence
Length = 558
Score = 343 bits (173), Expect = 2e-092
Identities = 255/279 (91%), Gaps = 3/279 (1%)
Strand = Plus / Plus
Query: 365 gctctagacggcgcggtaggacggtggcatcggcaggccgacgaccttgccgcagcggag 424
|||||| |||| | |||| ||||| |||| |||||||||||||||||||||||||||||
Sbjct: 280 gctctanacggagaggtangacggcggcagtggcaggccgacgaccttgccgcagcggag 339
Query: 425 gctggtctccggcatgttgtactcgtccctgagcgaccgctccggcgagatgacgctcac 484
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 340 gctggtctctggcatgttgtactcgtccctgagcgaccgctccggcgaggtgacgctgat 399
Query: 485 gtacagctgctcgccgaggtactgcctctcccagatgttggagcggacgctccacatgcc 544
||||||||||||||||||| | | |||||||||||||||||| |||| |||||||||||
Sbjct: 400 gtacagctgctcgccgagggaattcctctcccagatgttggaccggatactccacatgcc 459
Query: 545 cgcgttgtcgaacgtcatcatcaccgccgtccacgacct-tgggtacacctggatcgtgt 603
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 460 cgcgttgtcgaacgtcatcatcaccgccgtccacgacctcggggtacacctggaccgtgt 519
Query: 604 gcc-ggctcacc-gtgtccaggaggttgtacgtactccg 640
||| |||||||| | |||||||||| |||||||||||||
Sbjct: 520 gccgggctcaccggggtccaggagggtgtacgtactccg 558
Score = 42.1 bits (21), Expect = 0.088
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 334 ttgtgtacagcaccgtgcgcg 354
|||||||||||||||||||||
Sbjct: 223 ttgtgtacagcaccgtgcgcg 243
>gb|CF480672.1|CF480672 POL1_67_E06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_67_E06_A002 3', mRNA sequence
Length = 691
Score = 343 bits (173), Expect = 2e-092
Identities = 218/233 (93%)
Strand = Plus / Minus
Query: 365 gctctagacggcgcggtaggacggtggcatcggcaggccgacgaccttgccgcagcggag 424
||||||||||| | |||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 235 gctctagacggagaggtaggacggcggcagtggcaggccgacgaccttgccgcagcggag 176
Query: 425 gctggtctccggcatgttgtactcgtccctgagcgaccgctccggcgagatgacgctcac 484
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 175 gctggtctctggcatgttgtactcgtccctgagcgaccgctccggcgaggtgacgctgat 116
Query: 485 gtacagctgctcgccgaggtactgcctctcccagatgttggagcggacgctccacatgcc 544
||||||||||||||||||||| | |||||||||||||||||| |||| |||||||||||
Sbjct: 115 gtacagctgctcgccgaggtaattcctctcccagatgttggaccggatactccacatgcc 56
Query: 545 cgcgttgtcgaacgtcatcatcaccgccgtccacgaccttgggtacacctgga 597
||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 55 cgcgttgtcgaacgtcatcatcaccgccgtccacgacctcgggtacacctgga 3
Score = 79.8 bits (40), Expect = 4e-013
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 53 gtacatatacatgacataaagaacaattttggatgagggacttattagatagacatgctt 112
|||||||||||| | |||||||||| |||||| |||||||||||||||||||||| ||||
Sbjct: 659 gtacatatacataatataaagaacagttttggctgagggacttattagatagacaggctt 600
Score = 42.1 bits (21), Expect = 0.088
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 ttgtgtacagcaccgtgcgcg 354
|||||||||||||||||||||
Sbjct: 292 ttgtgtacagcaccgtgcgcg 272
>gb|CF489723.1|CF489723 POL1_59_F09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_59_F09_A002 3', mRNA sequence
Length = 658
Score = 307 bits (155), Expect = 1e-081
Identities = 200/215 (93%)
Strand = Plus / Minus
Query: 365 gctctagacggcgcggtaggacggtggcatcggcaggccgacgaccttgccgcagcggag 424
||||||||||| | |||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 215 gctctagacggagaggtaggacggcggcagtggcaggccgacgaccttgccgcagcggag 156
Query: 425 gctggtctccggcatgttgtactcgtccctgagcgaccgctccggcgagatgacgctcac 484
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 155 gctggtctctggcatgttgtactcgtccctgagcgaccgctccggcgaggtgacgctgat 96
Query: 485 gtacagctgctcgccgaggtactgcctctcccagatgttggagcggacgctccacatgcc 544
||||||||| ||||||||||| | |||||||||||||||||| |||| |||||||||||
Sbjct: 95 gtacagctgttcgccgaggtaattcctctcccagatgttggaccggatactccacatgcc 36
Query: 545 cgcgttgtcgaacgtcatcatcaccgccgtccacg 579
|||||||||||||||||||||||||||||||||||
Sbjct: 35 cgcgttgtcgaacgtcatcatcaccgccgtccacg 1
Score = 79.8 bits (40), Expect = 4e-013
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 53 gtacatatacatgacataaagaacaattttggatgagggacttattagatagacatgctt 112
|||||||||||| | |||||||||| |||||| |||||||||||||||||||||| ||||
Sbjct: 638 gtacatatacataatataaagaacagttttggctgagggacttattagatagacaggctt 579
Score = 42.1 bits (21), Expect = 0.088
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 ttgtgtacagcaccgtgcgcg 354
|||||||||||||||||||||
Sbjct: 272 ttgtgtacagcaccgtgcgcg 252
>gb|BG047687.1|BG047687 OV1_26_F01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 437
Score = 268 bits (135), Expect = 8e-070
Identities = 225/255 (88%)
Strand = Plus / Minus
Query: 380 gtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggcat 439
||||||||| |||| |||||| || ||||||||||||||||||||| | | ||||||||
Sbjct: 284 gtaggacggcggcagcggcagccccacgaccttgccgcagcggaggtcgttgtccggcat 225
Query: 440 gttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgcc 499
|||||||||||| | ||||| ||||||||||||||||||| | ||| | |||||| ||
Sbjct: 224 gttgtactcgtcgcgcagcgagtgctccggcgagatgacgctgatgtagaactgctcccc 165
Query: 500 gaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacgt 559
|||||| | | ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 164 gaggtagtagcgctcccagatgttggaccggacgctccacatgcccgcgttgtcgaacgt 105
Query: 560 catcatcaccgccgtccacgaccttgggtacacctggatcgtgtgccggctcaccgtgtc 619
|| ||| | ||||||||| ||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 104 cagcataatcgccgtccatgacctcgggtacacctggatcgtgtgccggctcaccgcgtc 45
Query: 620 caggaggttgtacgt 634
||| |||||||||||
Sbjct: 44 cagcaggttgtacgt 30
>gb|CW070516.1|CW070516 104_321_10526807_1_30090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10526807, DNA
sequence
Length = 622
Score = 260 bits (131), Expect = 2e-067
Identities = 224/255 (87%)
Strand = Plus / Plus
Query: 380 gtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggcat 439
||||||||| |||| |||||| || ||||||||||||| ||||||| | | ||||||||
Sbjct: 60 gtaggacggcggcagcggcagccccacgaccttgccgcggcggaggtcgttgtccggcat 119
Query: 440 gttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgcc 499
|||||||||||| | ||||| ||||||||||||||||||| | ||| | |||||| ||
Sbjct: 120 gttgtactcgtcgcgcagcgagtgctccggcgagatgacgctgatgtagaactgctcccc 179
Query: 500 gaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacgt 559
|||||| | | ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 180 gaggtagtagcgctcccagatgttggaccggacgctccacatgcccgcgttgtcgaacgt 239
Query: 560 catcatcaccgccgtccacgaccttgggtacacctggatcgtgtgccggctcaccgtgtc 619
|| ||| | ||||||||| ||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 240 cagcataatcgccgtccatgacctcgggtacacctggatcgtgtgccggctcaccgcgtc 299
Query: 620 caggaggttgtacgt 634
||| |||||||||||
Sbjct: 300 cagcaggttgtacgt 314
Score = 54.0 bits (27), Expect = 2e-005
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 716 gctcttctcggggttctcgaagnccaccncgatgaacnnncggaactcggcgctgatgac 775
|||||||||||||||||| ||| ||| | ||||||| | |||||||||| |||||||
Sbjct: 492 gctcttctcggggttctccaagaccatctcgatgaaggtgccgaactcggcggtgatgac 551
Query: 776 gttggg 781
|||||
Sbjct: 552 attggg 557
>gb|BG048012.1|BG048012 OV1_26_F01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 551
Score = 246 bits (124), Expect = 3e-063
Identities = 208/236 (88%)
Strand = Plus / Minus
Query: 380 gtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggcat 439
||||||||| |||| |||||| || ||||||||||||||||||||| | | ||||||||
Sbjct: 236 gtaggacggcggcagcggcagccccacgaccttgccgcagcggaggtcgttgtccggcat 177
Query: 440 gttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgcc 499
|||||||||||| | ||||| ||||||||||||||||||| | ||| | |||||| ||
Sbjct: 176 gttgtactcgtcgcgcagcgagtgctccggcgagatgacgctgatgtagaactgctcccc 117
Query: 500 gaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacgt 559
|||||| | | ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 116 gaggtagtagcgctcccagatgttggaccggacgctccacatgcccgcgttgtcgaacgt 57
Query: 560 catcatcaccgccgtccacgaccttgggtacacctggatcgtgtgccggctcaccg 615
|| ||| | ||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 56 cagcataatcgccgtccatgacctcgggtacacctggatcgtgtgccggctcaccg 1
>gb|CF486575.1|CF486575 POL1_38_B08.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_B08_A002 5', mRNA sequence
Length = 727
Score = 214 bits (108), Expect = 1e-053
Identities = 180/209 (86%)
Strand = Plus / Minus
Query: 588 tacacctggatcgtgtgccggctcaccgtgtccaggaggttgtacgtactccgcgacgct 647
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 727 tacacctggaccgtgtgccggctcaccgtgtccaggaggttgtacgtactccggcacgct 668
Query: 648 gccgtccatttgccgggccccatgccgacggcgaaaaaggcntnnncntcgatgnngatg 707
| |||||||||||| || ||||||||||||||||| || || | | |||||| || |
Sbjct: 667 ggcgtccatttgcccgggcccatgccgacggcgaagaatgcgtagccgtcgatgtggaag 608
Query: 708 nnntcgatgctcttctcggggttctcgaagnccaccncgatgaacnnncggaactcggcg 767
|||||||||||||||||||||||||| ||||| ||||||| ||||||||||||
Sbjct: 607 gtgtcgatgctcttctcggggttctcgaacaccacctcgatgaaggtgcggaactcggcg 548
Query: 768 ctgatgacgttgggtgccatcttggtggg 796
| || ||||||||| ||||||||||||||
Sbjct: 547 cggaggacgttgggagccatcttggtggg 519
>gb|CF484415.1|CF484415 POL1_25_E03.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_E03_A002 3', mRNA sequence
Length = 564
Score = 212 bits (107), Expect = 4e-053
Identities = 191/219 (87%)
Strand = Plus / Minus
Query: 380 gtaggacggtggcatcggcaggccgacgaccttgccgcagcggaggctggtctccggcat 439
||||||||| |||| |||||| || ||||||||||||||||||||| | | ||||||||
Sbjct: 219 gtaggacggcggcagcggcagccccacgaccttgccgcagcggaggtcgttgtccggcat 160
Query: 440 gttgtactcgtccctgagcgaccgctccggcgagatgacgctcacgtacagctgctcgcc 499
|||||||||||| | ||||| ||||||||||||||||||| | ||| | |||||| ||
Sbjct: 159 gttgtactcgtcgcgcagcgagtgctccggcgagatgacgctgatgtagaactgctcccc 100
Query: 500 gaggtactgcctctcccagatgttggagcggacgctccacatgcccgcgttgtcgaacgt 559
|||||| | | ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 99 gaggtagtagcgctcccagatgttggaccggacgctccacatgcccgcgttgtcgaacgt 40
Query: 560 catcatcaccgccgtccacgaccttgggtacacctggat 598
|| ||| | ||||||||| ||||| ||||||||||||||
Sbjct: 39 cagcataatcgccgtccatgacctcgggtacacctggat 1
>gb|BG464520.1|BG464520 EM1_70_G05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 574
Score = 208 bits (105), Expect = 7e-052
Identities = 132/141 (93%)
Strand = Plus / Minus
Query: 365 gctctagacggcgcggtaggacggtggcatcggcaggccgacgaccttgccgcagcggag 424
||||||||||| | |||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 142 gctctagacggagaggtaggacggcggcagtggcaggccgacgaccttgccgcagcggag 83
Query: 425 gctggtctccggcatgttgtactcgtccctgagcgaccgctccggcgagatgacgctcac 484
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 82 gctggtctctggcatgttgtactcgtccctgagcgaccgctccggcgaggtgacgctgat 23
Query: 485 gtacagctgctcgccgaggta 505
|||||||||||||||||||||
Sbjct: 22 gtacagctgctcgccgaggta 2
Score = 71.9 bits (36), Expect = 1e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 53 gtacatatacatgacataaagaacaattttggatgagggacttattagatagacatgctt 112
|||||||||||| | |||||||||| |||||| |||||||||||||| ||||||| ||||
Sbjct: 565 gtacatatacataatataaagaacatttttggctgagggacttattatatagacaggctt 506
Score = 42.1 bits (21), Expect = 0.088
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 ttgtgtacagcaccgtgcgcg 354
|||||||||||||||||||||
Sbjct: 199 ttgtgtacagcaccgtgcgcg 179
>gb|CF484496.1|CF484496 POL1_25_E03.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_E03_A002 5', mRNA sequence
Length = 545
Score = 151 bits (76), Expect = 1e-034
Identities = 202/249 (81%)
Strand = Plus / Minus
Query: 533 gctccacatgcccgcgttgtcgaacgtcatcatcaccgccgtccacgaccttgggtacac 592
|||||||||||||||||||| |||||||| ||| | ||||||||| ||||| ||||||||
Sbjct: 545 gctccacatgcccgcgttgtagaacgtcagcataatcgccgtccatgacctcgggtacac 486
Query: 593 ctggatcgtgtgccggctcaccgtgtccaggaggttgtacgtactccgcgacgctgccgt 652
||||||||||||||||||||||| |||||| ||||||||||| || || | | | ||
Sbjct: 485 ctggatcgtgtgccggctcaccgcgtccagcaggttgtacgtcaccctcgcctccggcga 426
Query: 653 ccatttgccgggccccatgccgacggcgaaaaaggcntnnncntcgatgnngatgnnntc 712
||| | || |||||||| |||||| |||| ||||| | | |||| | |||| ||
Sbjct: 425 ccactgcccaggccccatcccgacgccgaagaaggcgtagccgtcgaggtggatggagtc 366
Query: 713 gatgctcttctcggggttctcgaagnccaccncgatgaacnnncggaactcggcgctgat 772
| |||||||||||||||||||||| | | | ||||||| |||||||||||| ||||
Sbjct: 365 caagctcttctcggggttctcgaagacgatctcgatgaaggtgcggaactcggcggtgat 306
Query: 773 gacgttggg 781
||| |||||
Sbjct: 305 gacattggg 297
>gb|CW347589.1|CW347589 fsbb001f007i24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007i24, DNA
sequence
Length = 523
Score = 101 bits (51), Expect = 1e-019
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 711 tcgatgctcttctcggggttctcgaagnccaccncgatgaacnnncggaactcggcgctg 770
|||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |
Sbjct: 347 tcgatgctcttctcggggttctcgaacaccacctcgatgaaggtgcggaactcggcgcgg 288
Query: 771 atgacgttgggtgccatcttggtggg 796
| ||||||||| ||||||||||||||
Sbjct: 287 aggacgttgggagccatcttggtggg 262
>gb|CF484277.1|CF484277 POL1_4_F09.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_4_F09_A002 3', mRNA sequence
Length = 572
Score = 99.6 bits (50), Expect = 4e-019
Identities = 65/70 (92%)
Strand = Plus / Minus
Query: 365 gctctagacggcgcggtaggacggtggcatcggcaggccgacgaccttgccgcagcggag 424
||||||||||| | |||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 142 gctctagacggagaggtaggacggcggcagtggcaggccgacgaccttgccgcagcggag 83
Query: 425 gctggtctcc 434
||||||||||
Sbjct: 82 gctggtctcc 73
Score = 79.8 bits (40), Expect = 4e-013
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 53 gtacatatacatgacataaagaacaattttggatgagggacttattagatagacatgctt 112
|||||||||||| | |||||||||| |||||| |||||||||||||||||||||| ||||
Sbjct: 565 gtacatatacataatataaagaacagttttggctgagggacttattagatagacaggctt 506
Score = 42.1 bits (21), Expect = 0.088
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 ttgtgtacagcaccgtgcgcg 354
|||||||||||||||||||||
Sbjct: 199 ttgtgtacagcaccgtgcgcg 179
>gb|CW043993.1|CW043993 104_279_10508694_115_30247 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10508694, DNA
sequence
Length = 555
Score = 79.8 bits (40), Expect = 4e-013
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 53 gtacatatacatgacataaagaacaattttggatgagggacttattagatagacatgctt 112
|||||||||||| | |||||||||| |||||| |||||||||||||||||||||| ||||
Sbjct: 282 gtacatatacataatataaagaacagttttggctgagggacttattagatagacaggctt 341
>gb|CF486496.1|CF486496 POL1_38_B08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_B08_A002 3', mRNA sequence
Length = 437
Score = 79.8 bits (40), Expect = 4e-013
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 53 gtacatatacatgacataaagaacaattttggatgagggacttattagatagacatgctt 112
|||||||||||| | |||||||||| |||||| |||||||||||||||||||||| ||||
Sbjct: 390 gtacatatacataatataaagaacagttttggctgagggacttattagatagacaggctt 331
Score = 42.1 bits (21), Expect = 0.088
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 334 ttgtgtacagcaccgtgcgcg 354
|||||||||||||||||||||
Sbjct: 23 ttgtgtacagcaccgtgcgcg 3
>gb|CW045891.1|CW045891 104_282_10509838_114_30229 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509838, DNA
sequence
Length = 625
Score = 61.9 bits (31), Expect = 1e-007
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 716 gctcttctcggggttctcgaagnccaccncgatgaacnnncggaactcggcgctgatgac 775
|||||||||||||||||||||| | | | ||||||| |||||||||||| |||||||
Sbjct: 62 gctcttctcggggttctcgaagacgatctcgatgaaggtgcggaactcggcggtgatgac 121
Query: 776 gttggg 781
|||||
Sbjct: 122 attggg 127
>gb|CW478498.1|CW478498 fsbb001f236g18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f236g18, DNA
sequence
Length = 593
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 756 cggaactcggcgctgatgacgttgggtgccatcttggtggg 796
||||||||||||| || ||||||||| ||||||||||||||
Sbjct: 583 cggaactcggcgcggaggacgttgggagccatcttggtggg 543
>gb|CF481282.1|CF481282 POL1_71_C02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_71_C02_A002 3', mRNA sequence
Length = 322
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 68 ataaagaacaattttggatgagggacttattagatagacatgctt 112
|||||||||| |||||| |||||||||||||| ||||||| ||||
Sbjct: 194 ataaagaacagttttggctgagggacttattaaatagacaggctt 150
>gb|CL189048.1|CL189048 104_406_10902017_116_32471_079 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902017, DNA
sequence
Length = 535
Score = 42.1 bits (21), Expect = 0.088
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 461 ccgctccggcgagatgacgctcacg 485
|||||||||||||||||||| ||||
Sbjct: 145 ccgctccggcgagatgacgcgcacg 169
>gb|CL190769.1|CL190769 104_409_10906310_114_32491_061 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906310, DNA
sequence
Length = 633
Score = 42.1 bits (21), Expect = 0.088
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 461 ccgctccggcgagatgacgctcacg 485
|||||||||||||||||||| ||||
Sbjct: 603 ccgctccggcgagatgacgcgcacg 627
>gb|CL190770.1|CL190770 104_409_10906310_116_32499_061 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906310, DNA
sequence
Length = 694
Score = 42.1 bits (21), Expect = 0.088
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 461 ccgctccggcgagatgacgctcacg 485
|||||||||||||||||||| ||||
Sbjct: 534 ccgctccggcgagatgacgcgcacg 510
>gb|CW472012.1|CW472012 fsbb001f226i03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f226i03, DNA
sequence
Length = 662
Score = 42.1 bits (21), Expect = 0.088
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 461 ccgctccggcgagatgacgctcacg 485
|||||||||||||||||||| ||||
Sbjct: 619 ccgctccggcgagatgacgcgcacg 643
>gb|CW477133.1|CW477133 fsbb001f234f06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f234f06, DNA
sequence
Length = 544
Score = 42.1 bits (21), Expect = 0.088
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 461 ccgctccggcgagatgacgctcacg 485
|||||||||||||||||||| ||||
Sbjct: 541 ccgctccggcgagatgacgcgcacg 517
>gb|CD208762.1|CD208762 HS1_44_C05.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_44_C05_A012 3', mRNA sequence
Length = 481
Score = 42.1 bits (21), Expect = 0.088
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 461 ccgctccggcgagatgacgctcacg 485
|||||||||||||||||||| ||||
Sbjct: 34 ccgctccggcgagatgacgcgcacg 10
>gb|CD425186.1|CD425186 SA1_11_E10.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_11_E10_A002 3', mRNA sequence
Length = 478
Score = 42.1 bits (21), Expect = 0.088
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 461 ccgctccggcgagatgacgctcacg 485
|||||||||||||||||||| ||||
Sbjct: 32 ccgctccggcgagatgacgcgcacg 8
>gb|CD427044.1|CD427044 SA1_17_G03.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_17_G03_A002 3', mRNA sequence
Length = 620
Score = 42.1 bits (21), Expect = 0.088
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 461 ccgctccggcgagatgacgctcacg 485
|||||||||||||||||||| ||||
Sbjct: 32 ccgctccggcgagatgacgcgcacg 8
>gb|BZ691858.1|BZ691858 SP__Ba0013H08.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0013H08 3', DNA sequence
Length = 1249
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 168 tgcatgcatgcatgatgaag 187
||||||||||||||||||||
Sbjct: 909 tgcatgcatgcatgatgaag 890
>gb|CW785594.1|CW785594 SP__Ba0013H08.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0013H08 3', DNA sequence
Length = 884
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 168 tgcatgcatgcatgatgaag 187
||||||||||||||||||||
Sbjct: 882 tgcatgcatgcatgatgaag 863
>gb|CX611383.1|CX611383 ANR1_24_G11.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_24_G11_A002 3', mRNA sequence
Length = 725
Score = 40.1 bits (20), Expect = 0.35
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 489 agctgctcgccgaggtactgcctctcccagat 520
||||||| |||||||||||||| ||||||||
Sbjct: 322 agctgctggccgaggtactgccggtcccagat 291
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 255,574
Number of Sequences: 832831
Number of extensions: 255574
Number of successful extensions: 80743
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80629
Number of HSP's gapped (non-prelim): 104
length of query: 910
length of database: 491,359,669
effective HSP length: 20
effective length of query: 890
effective length of database: 474,703,049
effective search space: 422485713610
effective search space used: 422485713610
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)