BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192679.2.1
(1274 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD219734.1|CD219734 CCC1_58_H08.g1_A007 Callus culture/c... 948 0.0
gb|BG412034.1|BG412034 OV2_37_B11.b1_A002 Ovary 2 (OV2) Sor... 833 0.0
gb|CF427286.1|CF427286 PH1_4_E06.g1_A002 Phosphorous-defici... 716 0.0
gb|BG557854.1|BG557854 EM1_55_C04.b1_A002 Embryo 1 (EM1) So... 430 e-118
gb|CD233529.1|CD233529 SS1_2_E02.g1_A012 Salt-stressed seed... 377 e-102
gb|BG411721.1|BG411721 OV2_37_B11.g1_A002 Ovary 2 (OV2) Sor... 311 9e-083
gb|CW038889.1|CW038889 104_271_10505179_114_30387 Sorghum m... 172 5e-041
gb|CW038890.1|CW038890 104_271_10505179_115_30388 Sorghum m... 172 5e-041
gb|CW356579.1|CW356579 fsbb001f021l21f0 Sorghum methylation... 172 5e-041
gb|CW293396.1|CW293396 104_773_11414632_116_35588_050 Sorgh... 157 3e-036
gb|CW293397.1|CW293397 104_773_11414632_148_35592_050 Sorgh... 157 3e-036
gb|CW476073.1|CW476073 fsbb001f232m06k0 Sorghum methylation... 135 1e-029
gb|BG557683.1|BG557683 EM1_55_C04.g1_A002 Embryo 1 (EM1) So... 115 1e-023
gb|CD233426.1|CD233426 SS1_2_E02.b1_A012 Salt-stressed seed... 115 1e-023
gb|CF427174.1|CF427174 PH1_4_E06.b1_A002 Phosphorous-defici... 92 1e-016
gb|CD219709.1|CD219709 CCC1_58_H08.b1_A007 Callus culture/c... 60 5e-007
gb|CW476072.1|CW476072 fsbb001f232m06f0 Sorghum methylation... 58 2e-006
gb|CL165154.1|CL165154 104_359_10808393_114_31816_377 Sorgh... 56 8e-006
gb|CL165155.1|CL165155 104_359_10808393_116_31817_377 Sorgh... 56 8e-006
gb|BZ339316.1|BZ339316 ic31c12.b1 WGS-SbicolorF (JM107 adap... 48 0.002
gb|BZ336613.1|BZ336613 hz35h09.g1 WGS-SbicolorF (JM107 adap... 40 0.49
gb|BZ347036.1|BZ347036 hw04e04.b1 WGS-SbicolorF (JM107 adap... 40 0.49
gb|CW086783.1|CW086783 104_430_10947203_116_33019_034 Sorgh... 40 0.49
gb|BE592909.1|BE592909 WS1_92_A01.b1_A002 Water-stressed 1 ... 40 0.49
gb|BG411521.1|BG411521 EM1_57_A04.b1_A002 Embryo 1 (EM1) So... 40 0.49
gb|BI098219.1|BI098219 IP1_29_E12.b1_A002 Immature pannicle... 40 0.49
gb|BM317901.1|BM317901 OV1_16_H08.b9_A002 Ovary 1 (OV1) Sor... 40 0.49
gb|BM324642.1|BM324642 PIC1_33_G03.b1_A002 Pathogen-infecte... 40 0.49
gb|BM326370.1|BM326370 PIC1_56_C04.b1_A002 Pathogen-infecte... 40 0.49
gb|CD221740.1|CD221740 CCC1_70_G06.g1_A007 Callus culture/c... 40 0.49
gb|CD432736.1|CD432736 ETH1_25_E01.g1_A002 Ethylene-treated... 40 0.49
>gb|CD219734.1|CD219734 CCC1_58_H08.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_58_H08_A007 5', mRNA sequence
Length = 645
Score = 948 bits (478), Expect = 0.0
Identities = 580/614 (94%)
Strand = Plus / Plus
Query: 68 gtgaccgggaagatgatgccgttgagccaaaccgacttctcgccgtcgcagttcacctcc 127
||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||| ||
Sbjct: 20 gtgactgggaagatgatgccattgagccaacccgacttctcgccgtcgcagttcaccgcc 79
Query: 128 tcccagaatgccgccgccgactccaccacgccttccaagatgcgcggcgcgtccagcacc 187
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 80 tcccagaatgccgccgccgactccaccacgccttccaagatgcgcggggcgtccagcacc 139
Query: 188 atgccgctcaccgtgaagcaggtcgtcgacgcgcagcagtctggcacgggcgacaagggc 247
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct: 140 atgccgctcaccgtcaagcaggtcgtcgacgctcagcagtctggcaccggcgagaagggc 199
Query: 248 gctccgttcatcgtcaatggcgtcgagatggctaacattcgacttgtggggatggtcaat 307
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gctccgttcgtcgtggatggcgtcgagatggctaacattcgacttgtggggatggtcaac 259
Query: 308 gccaaggtggagcggacgaccgatgtgaccttcacgctcgacgatggcaccggccgcctc 367
| |||||||||||||||||||||||| || ||||||||||| || |||||||||||||||
Sbjct: 260 ggcaaggtggagcggacgaccgatgtcacattcacgctcgatgacggcaccggccgcctc 319
Query: 368 gatttcatcagatgggtgaatgatgcttcagattcttttgaaactgctgctattcagaat 427
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||
Sbjct: 320 gatttcatcagatgggtgaatgatgcttcagattcttctgaaactgctgctgttcaaaat 379
Query: 428 ggtatgtacattgcggtcattggaagcctcaagggactgcaagagaggaagcgtgctact 487
||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 380 ggtatgtacgtcgcggtcattggaagcctcaagggacttcaagagaggaagcgtgctact 439
Query: 488 gctttctcaatcaggcctataaccgatttcaatgaggttacgctgcatttcattcagtgt 547
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 440 gccttctcaatcaggcctataactgatttcaatgaggttacgctgcatttcattcagtgt 499
Query: 548 gttcggatgcatatagagaacattgaattaaaggctggcagtcctgcacgaatcagttct 607
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 500 gttcggatgcatatagagaacacgaaattaaaggctggcagtcctgcacgaaccagttct 559
Query: 608 tctatgggagtgtcattctcaaatggattcagtgaatcaagcacaccgacatctttgaaa 667
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 560 tctatgggagtgtcagtctcaaatggattcagtgaatcaagcacaccaacatctttgaaa 619
Query: 668 tccagtccagcacc 681
|| | |||||||||
Sbjct: 620 tcaaatccagcacc 633
>gb|BG412034.1|BG412034 OV2_37_B11.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 557
Score = 833 bits (420), Expect = 0.0
Identities = 504/532 (94%)
Strand = Plus / Plus
Query: 68 gtgaccgggaagatgatgccgttgagccaaaccgacttctcgccgtcgcagttcacctcc 127
||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||| ||
Sbjct: 22 gtgactgggaagatgatgccattgagccaacccgacttctcgccgtcgcagttcaccgcc 81
Query: 128 tcccagaatgccgccgccgactccaccacgccttccaagatgcgcggcgcgtccagcacc 187
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 82 tcccagaatgccgccgccgactccaccacgccttccaagatgcgcggggcgtccagcacc 141
Query: 188 atgccgctcaccgtgaagcaggtcgtcgacgcgcagcagtctggcacgggcgacaagggc 247
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct: 142 atgccgctcaccgtcaagcaggtcgtcgacgctcagcagtctggcaccggcgagaagggc 201
Query: 248 gctccgttcatcgtcaatggcgtcgagatggctaacattcgacttgtggggatggtcaat 307
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gctccgttcgtcgtggatggcgtcgagatggctaacattcgacttgtggggatggtcaac 261
Query: 308 gccaaggtggagcggacgaccgatgtgaccttcacgctcgacgatggcaccggccgcctc 367
| |||||||||||||||||||||||| || ||||||||||| || |||||||||||||||
Sbjct: 262 ggcaaggtggagcggacgaccgatgtcacattcacgctcgatgacggcaccggccgcctc 321
Query: 368 gatttcatcagatgggtgaatgatgcttcagattcttttgaaactgctgctattcagaat 427
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||
Sbjct: 322 gatttcatcagatgggtgaatgatgcttcagattcttctgaaactgctgctgttcaaaat 381
Query: 428 ggtatgtacattgcggtcattggaagcctcaagggactgcaagagaggaagcgtgctact 487
||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 382 ggtatgtacgtcgcggtcattggaagcctcaagggacttcaagagaggaagcgtgctact 441
Query: 488 gctttctcaatcaggcctataaccgatttcaatgaggttacgctgcatttcattcagtgt 547
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 442 gctttctcaatcaggcctataactgatttcaatgaggttacgctgcatttcattcagtgt 501
Query: 548 gttcggatgcatatagagaacattgaattaaaggctggcagtcctgcacgaa 599
|||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 502 gttcggatgcatatagagaacacgaaattaaaggctggcagtcctgcacgaa 553
>gb|CF427286.1|CF427286 PH1_4_E06.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_4_E06_A002 5', mRNA sequence
Length = 532
Score = 716 bits (361), Expect = 0.0
Identities = 447/476 (93%)
Strand = Plus / Plus
Query: 68 gtgaccgggaagatgatgccgttgagccaaaccgacttctcgccgtcgcagttcacctcc 127
||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||| ||
Sbjct: 57 gtgactgggaagatgatgccattgagccaacccgacttctcgccgtcgcagttcaccgcc 116
Query: 128 tcccagaatgccgccgccgactccaccacgccttccaagatgcgcggcgcgtccagcacc 187
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 117 tcccagaatgccgccgccgactccaccacgccttccaagatgcgcggggcgtccagcacc 176
Query: 188 atgccgctcaccgtgaagcaggtcgtcgacgcgcagcagtctggcacgggcgacaagggc 247
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct: 177 atgccgctcaccgtcaagcaggtcgtcgacgctcagcagtctggcaccggcgagaagggc 236
Query: 248 gctccgttcatcgtcaatggcgtcgagatggctaacattcgacttgtggggatggtcaat 307
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gctccgttcgtcgtggatggcgtcgagatggctaacattcgacttgtggggatggtcaac 296
Query: 308 gccaaggtggagcggacgaccgatgtgaccttcacgctcgacgatggcaccggccgcctc 367
| |||||||||||||||||||||||| || ||||||||||| || || |||||||||||
Sbjct: 297 ggcaaggtggagcggacgaccgatgtcacattcacgctcgatgactgctccggccgcctc 356
Query: 368 gatttcatcagatgggtgaatgatgcttcagattcttttgaaactgctgctattcagaat 427
||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||| |||
Sbjct: 357 gatttcatcagatgggtgaatgatgcttcngattcttctgaaactgctgctgttcaaaat 416
Query: 428 ggtatgtacattgcggtcattggaagcctcaagggactgcaagagaggaagcgtgctact 487
||||||||| | |||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 417 ggtatgtacgtcgcggtcattggaagcctctagggacttcaagagaggaagcgtgctact 476
Query: 488 gctttctcaatcaggcctataaccgatttcaatgaggttacgctgcatttcattca 543
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 477 gctttctcaatcaggcctataactgatttcaatgaggttacgctgcatttcattca 532
>gb|BG557854.1|BG557854 EM1_55_C04.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 345
Score = 430 bits (217), Expect = e-118
Identities = 265/281 (94%)
Strand = Plus / Plus
Query: 68 gtgaccgggaagatgatgccgttgagccaaaccgacttctcgccgtcgcagttcacctcc 127
||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||| ||
Sbjct: 60 gtgactgggaagatgatgccattgagccaacccgacttctcgccgtcgcagttcaccgcc 119
Query: 128 tcccagaatgccgccgccgactccaccacgccttccaagatgcgcggcgcgtccagcacc 187
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 120 tcccagaatgccgccgccgactccaccacgccttccaagatgcgcggggcgtccagcacc 179
Query: 188 atgccgctcaccgtgaagcaggtcgtcgacgcgcagcagtctggcacgggcgacaagggc 247
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct: 180 atgccgctcaccgtcaagcaggtcgtcgacgctcagcagtctggcaccggcgagaagggc 239
Query: 248 gctccgttcatcgtcaatggcgtcgagatggctaacattcgacttgtggggatggtcaat 307
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gctccgttcgtcgtggatggcgtcgagatggctaacattcgacttgtggggatggtcaac 299
Query: 308 gccaaggtggagcggacgaccgatgtgaccttcacgctcga 348
| |||||||||||||||||||||||| || |||||||||||
Sbjct: 300 ggcaaggtggagcggacgaccgatgtcacattcacgctcga 340
>gb|CD233529.1|CD233529 SS1_2_E02.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_2_E02_A012 5', mRNA sequence
Length = 652
Score = 377 bits (190), Expect = e-102
Identities = 229/242 (94%)
Strand = Plus / Plus
Query: 381 gggtgaatgatgcttcagattcttttgaaactgctgctattcagaatggtatgtacattg 440
|||||||||||||||||||||||| |||||||||||| |||| |||||||||||| | |
Sbjct: 410 gggtgaatgatgcttcagattcttccgaaactgctgctgttcaaaatggtatgtacgtcg 469
Query: 441 cggtcattggaagcctcaagggactgcaagagaggaagcgtgctactgctttctcaatca 500
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 470 cggtcattggaagcctcaagggacttcaagagaggaagcgtgctactgctttctcaatca 529
Query: 501 ggcctataaccgatttcaatgaggttacgctgcatttcattcagtgtgttcggatgcata 560
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ggcctataactgacttcaatgaggttacgctgcatttcattcagtgtgttcggatgcata 589
Query: 561 tagagaacattgaattaaaggctggcagtcctgcacgaatcagttcttctatgggagtgt 620
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 590 tagagaacacgaaattaaaggctggcagtcctgcacgaaccagttcttctatgggagtgt 649
Query: 621 ca 622
||
Sbjct: 650 ca 651
>gb|BG411721.1|BG411721 OV2_37_B11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 668
Score = 311 bits (157), Expect = 9e-083
Identities = 184/193 (95%)
Strand = Plus / Plus
Query: 489 ctttctcaatcaggcctataaccgatttcaatgaggttacgctgcatttcattcagtgtg 548
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttctcaatcaggcctataactgatttcaatgaggttacgctgcatttcattcagtgtg 60
Query: 549 ttcggatgcatatagagaacattgaattaaaggctggcagtcctgcacgaatcagttctt 608
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 61 ttcggatgcatatagagaacacgaaattaaaggctggcagtcctgcacgaaccagttctt 120
Query: 609 ctatgggagtgtcattctcaaatggattcagtgaatcaagcacaccgacatctttgaaat 668
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 121 ctatgggagtgtcagtctcaaatggattcagtgaatcaagcacaccaacatctttgaaat 180
Query: 669 ccagtccagcacc 681
| | |||||||||
Sbjct: 181 caaatccagcacc 193
Score = 115 bits (58), Expect = 1e-023
Identities = 130/154 (84%)
Strand = Plus / Plus
Query: 739 tgaaccagcgaacctcgagagtgagcatggggtgcacgttgatgaagtactcaagcggtt 798
||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||| |||
Sbjct: 257 tgaaccagcgaaccttgagagtgagcacggggtgcatgttgatgaagtatacaagcagtt 316
Query: 799 caaacttttgccgaagaagcagatcacggatgctattgattacaatatggactcggggcg 858
||||| |||| ||| | |||||| ||| ||||||| || | || ||||| | ||||
Sbjct: 317 caaacaactgccaaaggataagatcaaggaggctattgctttccatgtggacgccgggca 376
Query: 859 tctttactcaacaattgatgaattccactacaag 892
||||||||||||||||||||| ||||||| ||||
Sbjct: 377 tctttactcaacaattgatgacttccacttcaag 410
Score = 56.0 bits (28), Expect = 8e-006
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 913 gtcagcctgctggaaatggcagaggactaagtatcacttg 952
||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 452 gtcagcctgctcgaa-tggcagaggactaagtatcacttg 490
>gb|CW038889.1|CW038889 104_271_10505179_114_30387 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505179, DNA
sequence
Length = 681
Score = 172 bits (87), Expect = 5e-041
Identities = 111/119 (93%)
Strand = Plus / Minus
Query: 165 agatgcgcggcgcgtccagcaccatgccgctcaccgtgaagcaggtcgtcgacgcgcagc 224
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 520 agatgcgcggggcgtccagcaccatgccgctcaccgtcaagcaggtcgtcgacgctcagc 461
Query: 225 agtctggcacgggcgacaagggcgctccgttcatcgtcaatggcgtcgagatggctaac 283
|||||||||| ||||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 460 agtctggcaccggcgagaagggcgctccgttcgtcgtggatggcgtcgagatggctaac 402
Score = 149 bits (75), Expect = 7e-034
Identities = 93/99 (93%)
Strand = Plus / Minus
Query: 284 attcgacttgtggggatggtcaatgccaaggtggagcggacgaccgatgtgaccttcacg 343
||||||||||||||||||||||| | |||||||||||||||||||||||| || ||||||
Sbjct: 263 attcgacttgtggggatggtcaacggcaaggtggagcggacgaccgatgtcacattcacg 204
Query: 344 ctcgacgatggcaccggccgcctcgatttcatcagatgg 382
||||| || ||||||||||||||||||||||||||||||
Sbjct: 203 ctcgatgacggcaccggccgcctcgatttcatcagatgg 165
Score = 99.6 bits (50), Expect = 6e-019
Identities = 53/54 (98%)
Strand = Plus / Minus
Query: 113 tcgcagttcacctcctcccagaatgccgccgccgactccaccacgccttccaag 166
|||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcgcagttcaccgcctcccagaatgccgccgccgactccaccacgccttccaag 628
>gb|CW038890.1|CW038890 104_271_10505179_115_30388 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505179, DNA
sequence
Length = 734
Score = 172 bits (87), Expect = 5e-041
Identities = 111/119 (93%)
Strand = Plus / Plus
Query: 165 agatgcgcggcgcgtccagcaccatgccgctcaccgtgaagcaggtcgtcgacgcgcagc 224
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 406 agatgcgcggggcgtccagcaccatgccgctcaccgtcaagcaggtcgtcgacgctcagc 465
Query: 225 agtctggcacgggcgacaagggcgctccgttcatcgtcaatggcgtcgagatggctaac 283
|||||||||| ||||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 466 agtctggcaccggcgagaagggcgctccgttcgtcgtggatggcgtcgagatggctaac 524
Score = 165 bits (83), Expect = 1e-038
Identities = 95/99 (95%)
Strand = Plus / Plus
Query: 68 gtgaccgggaagatgatgccgttgagccaaaccgacttctcgccgtcgcagttcacctcc 127
||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||| ||
Sbjct: 200 gtgactgggaagatgatgccattgagccaacccgacttctcgccgtcgcagttcaccgcc 259
Query: 128 tcccagaatgccgccgccgactccaccacgccttccaag 166
|||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcccagaatgccgccgccgactccaccacgccttccaag 298
Score = 83.8 bits (42), Expect = 4e-014
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 291 ttgtggggatggtcaatgccaaggtggagcggacgaccgatgtgaccttcacgctcga 348
|||||||||||||||| | |||||||||||||||||||||||| || |||||||||||
Sbjct: 671 ttgtggggatggtcaacggcaaggtggagcggacgaccgatgtcacattcacgctcga 728
>gb|CW356579.1|CW356579 fsbb001f021l21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f021l21, DNA
sequence
Length = 698
Score = 172 bits (87), Expect = 5e-041
Identities = 111/119 (93%)
Strand = Plus / Minus
Query: 165 agatgcgcggcgcgtccagcaccatgccgctcaccgtgaagcaggtcgtcgacgcgcagc 224
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 155 agatgcgcggggcgtccagcaccatgccgctcaccgtcaagcaggtcgtcgacgctcagc 96
Query: 225 agtctggcacgggcgacaagggcgctccgttcatcgtcaatggcgtcgagatggctaac 283
|||||||||| ||||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 95 agtctggcaccggcgagaagggcgctccgttcgtcgtggatggcgtcgagatggctaac 37
Score = 165 bits (83), Expect = 1e-038
Identities = 95/99 (95%)
Strand = Plus / Minus
Query: 68 gtgaccgggaagatgatgccgttgagccaaaccgacttctcgccgtcgcagttcacctcc 127
||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||| ||
Sbjct: 361 gtgactgggaagatgatgccattgagccaacccgacttctcgccgtcgcagttcaccgcc 302
Query: 128 tcccagaatgccgccgccgactccaccacgccttccaag 166
|||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcccagaatgccgccgccgactccaccacgccttccaag 263
>gb|CW293396.1|CW293396 104_773_11414632_116_35588_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11414632, DNA
sequence
Length = 642
Score = 157 bits (79), Expect = 3e-036
Identities = 88/91 (96%)
Strand = Plus / Plus
Query: 579 aggctggcagtcctgcacgaatcagttcttctatgggagtgtcattctcaaatggattca 638
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 258 aggctggcagtcctgcacgaaccagttcttctatgggagtgtcagtctcaaatggattca 317
Query: 639 gtgaatcaagcacaccgacatctttgaaatc 669
|||||||||||||||| ||||||||||||||
Sbjct: 318 gtgaatcaagcacaccaacatctttgaaatc 348
Score = 135 bits (68), Expect = 1e-029
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 498 tcaggcctataaccgatttcaatgaggttacgctgcatttcattcagtgtgttcggatgc 557
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 tcaggcctataactgatttcaatgaggttacgctgcatttcattcagtgtgttcggatgc 145
Query: 558 atatagagaaca 569
||||||||||||
Sbjct: 146 atatagagaaca 157
>gb|CW293397.1|CW293397 104_773_11414632_148_35592_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11414632, DNA
sequence
Length = 691
Score = 157 bits (79), Expect = 3e-036
Identities = 88/91 (96%)
Strand = Plus / Minus
Query: 579 aggctggcagtcctgcacgaatcagttcttctatgggagtgtcattctcaaatggattca 638
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 504 aggctggcagtcctgcacgaaccagttcttctatgggagtgtcagtctcaaatggattca 445
Query: 639 gtgaatcaagcacaccgacatctttgaaatc 669
|||||||||||||||| ||||||||||||||
Sbjct: 444 gtgaatcaagcacaccaacatctttgaaatc 414
Score = 119 bits (60), Expect = 7e-025
Identities = 69/72 (95%)
Strand = Plus / Minus
Query: 498 tcaggcctataaccgatttcaatgaggttacgctgcatttcattcagtgtgttcggatgc 557
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tcaggcctataactgattcaaatgaggttacgctgcatttcattcagtgtgttcggatgc 617
Query: 558 atatagagaaca 569
||||||||||||
Sbjct: 616 atatagagaaca 605
>gb|CW476073.1|CW476073 fsbb001f232m06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f232m06, DNA
sequence
Length = 590
Score = 135 bits (68), Expect = 1e-029
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 498 tcaggcctataaccgatttcaatgaggttacgctgcatttcattcagtgtgttcggatgc 557
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tcaggcctataactgatttcaatgaggttacgctgcatttcattcagtgtgttcggatgc 438
Query: 558 atatagagaaca 569
||||||||||||
Sbjct: 439 atatagagaaca 450
Score = 131 bits (66), Expect = 2e-028
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 425 aatggtatgtacattgcggtcattggaagcctcaagggactgcaagagaggaagcgtgct 484
|||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 228 aatggtatgtacgtcgcggtcattggaagcctcaagggacttcaagagaggaagcgtgct 287
Query: 485 actgctttctcaatcagg 502
||||||||||||||||||
Sbjct: 288 actgctttctcaatcagg 305
Score = 71.9 bits (36), Expect = 1e-010
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 579 aggctggcagtcctgcacgaatcagttcttctatgggagt 618
||||||||||||||||||||| ||||||||||||||||||
Sbjct: 551 aggctggcagtcctgcacgaaccagttcttctatgggagt 590
Score = 71.9 bits (36), Expect = 1e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 381 gggtgaatgatgcttcagattcttttgaaactgctgctattcag 424
|||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 71 gggtgaatgatgcttcagattcttctgaaactgctgctgttcag 114
>gb|BG557683.1|BG557683 EM1_55_C04.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 526
Score = 115 bits (58), Expect = 1e-023
Identities = 130/154 (84%)
Strand = Plus / Plus
Query: 739 tgaaccagcgaacctcgagagtgagcatggggtgcacgttgatgaagtactcaagcggtt 798
||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||| |||
Sbjct: 23 tgaaccagcgaaccttgagagtgagcacggggtgcatgttgatgaagtatacaagcagtt 82
Query: 799 caaacttttgccgaagaagcagatcacggatgctattgattacaatatggactcggggcg 858
||||| |||| ||| | |||||| ||| ||||||| || | || ||||| | ||||
Sbjct: 83 caaacaactgccaaaggataagatcaaggaggctattgctttccatgtggacgccgggca 142
Query: 859 tctttactcaacaattgatgaattccactacaag 892
||||||||||||||||||||| ||||||| ||||
Sbjct: 143 tctttactcaacaattgatgacttccacttcaag 176
Score = 56.0 bits (28), Expect = 8e-006
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 913 gtcagcctgctggaaatggcagaggactaagtatcacttg 952
||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 218 gtcagcctgctcgaa-tggcagaggactaagtatcacttg 256
>gb|CD233426.1|CD233426 SS1_2_E02.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_2_E02_A012 3', mRNA sequence
Length = 628
Score = 115 bits (58), Expect = 1e-023
Identities = 130/154 (84%)
Strand = Plus / Plus
Query: 739 tgaaccagcgaacctcgagagtgagcatggggtgcacgttgatgaagtactcaagcggtt 798
||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||| |||
Sbjct: 82 tgaaccagcgaaccttgagagtgagcacggggtgcatgttgatgaagtatacaagcagtt 141
Query: 799 caaacttttgccgaagaagcagatcacggatgctattgattacaatatggactcggggcg 858
||||| |||| ||| | |||||| ||| ||||||| || | || ||||| | ||||
Sbjct: 142 caaacaactgccaaaggataagatcaaggaggctattgctttccatgtggacgccgggca 201
Query: 859 tctttactcaacaattgatgaattccactacaag 892
||||||||||||||||||||| ||||||| ||||
Sbjct: 202 tctttactcaacaattgatgacttccacttcaag 235
Score = 56.0 bits (28), Expect = 8e-006
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 913 gtcagcctgctggaaatggcagaggactaagtatcacttg 952
||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 277 gtcagcctgctcgaa-tggcagaggactaagtatcacttg 315
Score = 46.1 bits (23), Expect = 0.008
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1018 ttatatcttgtatcaactagttgattt 1044
||||||||||| |||||||||||||||
Sbjct: 534 ttatatcttgtgtcaactagttgattt 560
>gb|CF427174.1|CF427174 PH1_4_E06.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_4_E06_A002 3', mRNA sequence
Length = 544
Score = 91.7 bits (46), Expect = 1e-016
Identities = 115/138 (83%)
Strand = Plus / Plus
Query: 755 gagagtgagcatggggtgcacgttgatgaagtactcaagcggttcaaacttttgccgaag 814
||||||||||| |||||||| |||||||||||| ||||| |||||||| |||| |||
Sbjct: 2 gagagtgagcacggggtgcatgttgatgaagtatacaagcagttcaaacaactgccaaag 61
Query: 815 aagcagatcacggatgctattgattacaatatggactcggggcgtctttactcaacaatt 874
| |||||| ||| ||||||| || | || ||||| | |||| ||||||||||||||||
Sbjct: 62 gataagatcaaggaggctattgctttccatgtggacgccgggcatctttactcaacaatt 121
Query: 875 gatgaattccactacaag 892
||||| ||||||| ||||
Sbjct: 122 gatgacttccacttcaag 139
Score = 56.0 bits (28), Expect = 8e-006
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 913 gtcagcctgctggaaatggcagaggactaagtatcacttg 952
||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 181 gtcagcctgctcgaa-tggcagaggactaagtatcacttg 219
Score = 46.1 bits (23), Expect = 0.008
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1018 ttatatcttgtatcaactagttgattt 1044
||||||||||| |||||||||||||||
Sbjct: 438 ttatatcttgtgtcaactagttgattt 464
>gb|CD219709.1|CD219709 CCC1_58_H08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_58_H08_A007 3', mRNA sequence
Length = 643
Score = 60.0 bits (30), Expect = 5e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 819 agatcacggatgctattgattacaatatggactcggggcgtctttactcaacaattgatg 878
|||||| ||| ||||||| || | || ||||| | |||| ||||||||||||||||||||
Sbjct: 14 agatcaaggaggctattgctttccatgtggacgccgggcatctttactcaacaattgatg 73
Query: 879 aattccactacaag 892
| ||||||| ||||
Sbjct: 74 acttccacttcaag 87
Score = 56.0 bits (28), Expect = 8e-006
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 913 gtcagcctgctggaaatggcagaggactaagtatcacttg 952
||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 129 gtcagcctgctcgaa-tggcagaggactaagtatcacttg 167
Score = 46.1 bits (23), Expect = 0.008
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1018 ttatatcttgtatcaactagttgattt 1044
||||||||||| |||||||||||||||
Sbjct: 386 ttatatcttgtgtcaactagttgattt 412
>gb|CW476072.1|CW476072 fsbb001f232m06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f232m06, DNA
sequence
Length = 621
Score = 58.0 bits (29), Expect = 2e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 755 gagagtgagcatggggtgcacgttgatgaagtactcaagcggttcaaac 803
||||||||||| |||||||| |||||||||||| ||||| ||||||||
Sbjct: 224 gagagtgagcacggggtgcatgttgatgaagtatacaagcagttcaaac 176
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 854 gggcgtctttactcaacaattgatgaattccactacaag 892
|||| ||||||||||||||||||||| ||||||| ||||
Sbjct: 47 gggcatctttactcaacaattgatgacttccacttcaag 9
>gb|CL165154.1|CL165154 104_359_10808393_114_31816_377 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808393, DNA
sequence
Length = 778
Score = 56.0 bits (28), Expect = 8e-006
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 913 gtcagcctgctggaaatggcagaggactaagtatcacttg 952
||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 216 gtcagcctgctcgaa-tggcagaggactaagtatcacttg 254
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 854 gggcgtctttactcaacaattgatgaattccactacaag 892
|||| ||||||||||||||||||||| ||||||| ||||
Sbjct: 136 gggcatctttactcaacaattgatgacttccacttcaag 174
Score = 46.1 bits (23), Expect = 0.008
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1018 ttatatcttgtatcaactagttgattt 1044
||||||||||| |||||||||||||||
Sbjct: 473 ttatatcttgtgtcaactagttgattt 499
>gb|CL165155.1|CL165155 104_359_10808393_116_31817_377 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808393, DNA
sequence
Length = 754
Score = 56.0 bits (28), Expect = 8e-006
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 913 gtcagcctgctggaaatggcagaggactaagtatcacttg 952
||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 605 gtcagcctgctcgaa-tggcagaggactaagtatcacttg 567
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 854 gggcgtctttactcaacaattgatgaattccactacaag 892
|||| ||||||||||||||||||||| ||||||| ||||
Sbjct: 685 gggcatctttactcaacaattgatgacttccacttcaag 647
Score = 46.1 bits (23), Expect = 0.008
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1018 ttatatcttgtatcaactagttgattt 1044
||||||||||| |||||||||||||||
Sbjct: 348 ttatatcttgtgtcaactagttgattt 322
>gb|BZ339316.1|BZ339316 ic31c12.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic31c12 5', DNA sequence
Length = 607
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 929 tggcagaggactaagtatcacttg 952
||||||||||||||||||||||||
Sbjct: 1 tggcagaggactaagtatcacttg 24
Score = 46.1 bits (23), Expect = 0.008
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1018 ttatatcttgtatcaactagttgattt 1044
||||||||||| |||||||||||||||
Sbjct: 243 ttatatcttgtgtcaactagttgattt 269
>gb|BZ336613.1|BZ336613 hz35h09.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hz35h09 5', DNA sequence
Length = 696
Score = 40.1 bits (20), Expect = 0.49
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 777 ttgatgaagtactcaagcggttcaaact 804
|||||||| || ||||||||||||||||
Sbjct: 356 ttgatgaaatagtcaagcggttcaaact 329
>gb|BZ347036.1|BZ347036 hw04e04.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hw04e04 5', DNA sequence
Length = 552
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 345 tcgacgatggcaccggccgcctcg 368
|||||||||||||| |||||||||
Sbjct: 167 tcgacgatggcacccgccgcctcg 144
>gb|CW086783.1|CW086783 104_430_10947203_116_33019_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947203, DNA
sequence
Length = 627
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 345 tcgacgatggcaccggccgcctcg 368
|||||||||||||| |||||||||
Sbjct: 292 tcgacgatggcacccgccgcctcg 315
>gb|BE592909.1|BE592909 WS1_92_A01.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 568
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 345 tcgacgatggcaccggccgcctcg 368
|||||||||||||| |||||||||
Sbjct: 258 tcgacgatggcacccgccgcctcg 235
>gb|BG411521.1|BG411521 EM1_57_A04.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 254
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 345 tcgacgatggcaccggccgcctcg 368
|||||||||||||| |||||||||
Sbjct: 226 tcgacgatggcacccgccgcctcg 203
>gb|BI098219.1|BI098219 IP1_29_E12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 345 tcgacgatggcaccggccgcctcg 368
|||||||||||||| |||||||||
Sbjct: 263 tcgacgatggcacccgccgcctcg 240
>gb|BM317901.1|BM317901 OV1_16_H08.b9_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 518
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 345 tcgacgatggcaccggccgcctcg 368
|||||||||||||| |||||||||
Sbjct: 339 tcgacgatggcacccgccgcctcg 316
>gb|BM324642.1|BM324642 PIC1_33_G03.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 541
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 345 tcgacgatggcaccggccgcctcg 368
|||||||||||||| |||||||||
Sbjct: 228 tcgacgatggcacccgccgcctcg 205
>gb|BM326370.1|BM326370 PIC1_56_C04.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 518
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 345 tcgacgatggcaccggccgcctcg 368
|||||||||||||| |||||||||
Sbjct: 228 tcgacgatggcacccgccgcctcg 205
>gb|CD221740.1|CD221740 CCC1_70_G06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_70_G06_A007 5', mRNA sequence
Length = 446
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 345 tcgacgatggcaccggccgcctcg 368
|||||||||||||| |||||||||
Sbjct: 260 tcgacgatggcacccgccgcctcg 237
>gb|CD432736.1|CD432736 ETH1_25_E01.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_25_E01_A002 5', mRNA sequence
Length = 476
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 345 tcgacgatggcaccggccgcctcg 368
|||||||||||||| |||||||||
Sbjct: 273 tcgacgatggcacccgccgcctcg 250
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 344,125
Number of Sequences: 832831
Number of extensions: 344125
Number of successful extensions: 94332
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94222
Number of HSP's gapped (non-prelim): 106
length of query: 1274
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1254
effective length of database: 474,703,049
effective search space: 595277623446
effective search space used: 595277623446
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)