BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192593.2.1
(800 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN124342.1|CN124342 RHOH1_4_D05.b1_A002 Acid- and alkali... 765 0.0
gb|CD207558.1|CD207558 HS1_33_F04.b1_A012 Heat-shocked seed... 735 0.0
gb|BE362147.1|BE362147 DG1_84_D06.g1_A002 Dark Grown 1 (DG1... 731 0.0
gb|BE360262.1|BE360262 DG1_62_B04.b1_A002 Dark Grown 1 (DG1... 718 0.0
gb|BG356773.1|BG356773 OV2_9_G07.g1_A002 Ovary 2 (OV2) Sorg... 607 e-172
gb|CN127948.1|CN127948 RHOH1_26_C08.b1_A002 Acid- and alkal... 603 e-170
gb|BG356871.1|BG356871 OV2_11_A07.g1_A002 Ovary 2 (OV2) Sor... 579 e-163
gb|CB926564.1|CB926564 ABA1_2_A01.b1_A012 Abscisic acid-tre... 579 e-163
gb|BE362939.2|BE362939 DG1_91_C11.g1_A002 Dark Grown 1 (DG1... 535 e-150
gb|CF761302.1|CF761302 DSAF1_73_E08.b1_A011 Drought-stresse... 525 e-147
gb|BE359575.1|BE359575 DG1_54_D04.g2_A002 Dark Grown 1 (DG1... 511 e-143
gb|BE356223.1|BE356223 DG1_123_E04.g1_A002 Dark Grown 1 (DG... 444 e-123
gb|BI098006.1|BI098006 IP1_30_H05.g1_A002 Immature pannicle... 349 2e-094
gb|CW040137.1|CW040137 104_273_10505918_114_30266 Sorghum m... 323 1e-086
gb|CD231584.1|CD231584 SS1_22_D07.b1_A012 Salt-stressed see... 323 1e-086
gb|BE359268.1|BE359268 DG1_39_A07.g1_A002 Dark Grown 1 (DG1... 319 2e-085
gb|BG052626.1|BG052626 RHIZ2_27_C02.g1_A003 Rhizome2 (RHIZ2... 240 2e-061
gb|CW222362.1|CW222362 104_657_11202334_116_37451_083 Sorgh... 204 9e-051
gb|CW260402.1|CW260402 104_727_11228947_148_35199_078 Sorgh... 204 9e-051
gb|CW260401.1|CW260401 104_727_11228947_116_35195_078 Sorgh... 168 5e-040
gb|CW297852.1|CW297852 104_780_11462261_116_35646_027 Sorgh... 168 5e-040
gb|BE362145.1|BE362145 DG1_84_D03.g1_A002 Dark Grown 1 (DG1... 163 3e-038
gb|CL177395.1|CL177395 104_384_10893805_116_31916_253 Sorgh... 135 7e-030
gb|CL177396.1|CL177396 104_384_10893805_148_31915_253 Sorgh... 135 7e-030
gb|CW137973.1|CW137973 104_525_11119958_148_34875_055 Sorgh... 135 7e-030
gb|CW276375.1|CW276375 104_750_11405455_116_35396_032 Sorgh... 135 7e-030
gb|CW282858.1|CW282858 104_759_11408938_148_35474_045 Sorgh... 135 7e-030
gb|CW380051.1|CW380051 fsbb001f059k11k0 Sorghum methylation... 135 7e-030
gb|CW405552.1|CW405552 fsbb001f098c18k0 Sorghum methylation... 135 7e-030
gb|AW282973.2|AW282973 LG1_206_D06.g1_A002 Light Grown 1 (L... 107 2e-021
gb|CW430773.1|CW430773 fsbb001f144k09f0 Sorghum methylation... 80 4e-013
gb|CW090470.1|CW090470 104_436_10949298_114_32605_073 Sorgh... 78 1e-012
gb|CN131929.1|CN131929 OX1_3_C10.b1_A002 Oxidatively-stress... 78 1e-012
gb|CL153272.1|CL153272 104_337_10780603_114_31367_235 Sorgh... 70 3e-010
gb|CL193103.1|CL193103 104_416_10940701_114_32265_055 Sorgh... 70 3e-010
gb|CW080946.1|CW080946 104_416_10940701_114_32341_055 Sorgh... 70 3e-010
gb|CW082416.1|CW082416 104_424_10943692_116_32340_012 Sorgh... 70 3e-010
gb|CW206798.1|CW206798 104_635_11187780_116_36962_038 Sorgh... 70 3e-010
gb|CW206799.1|CW206799 104_635_11187780_148_36966_038 Sorgh... 70 3e-010
gb|CW252058.1|CW252058 104_715_11224285_116_35094_063 Sorgh... 70 3e-010
gb|CW380050.1|CW380050 fsbb001f059k11f0 Sorghum methylation... 70 3e-010
gb|BE125881.1|BE125881 DG1_59_B06.b1_A002 Dark Grown 1 (DG1... 70 3e-010
gb|AW923753.1|AW923753 DG1_59_B06.g1_A002 Dark Grown 1 (DG1... 50 3e-004
gb|BZ368348.1|BZ368348 id12g11.b1 WGS-SbicolorF (JM107 adap... 44 0.020
gb|CW317755.1|CW317755 104_809_11473583_116_35861_086 Sorgh... 44 0.020
gb|CW317757.1|CW317757 104_809_11473584_116_35862_086 Sorgh... 44 0.020
gb|CW424062.1|CW424062 fsbb001f134d10f0 Sorghum methylation... 44 0.020
gb|AW565878.1|AW565878 LG1_352_H12.g1_A002 Light Grown 1 (L... 44 0.020
gb|AW681193.1|AW681193 WS1_9_D05.g1_A002 Water-stressed 1 (... 44 0.020
gb|AW922462.1|AW922462 DG1_19_G06.g1_A002 Dark Grown 1 (DG1... 44 0.020
gb|BE125725.1|BE125725 DG1_54_F08.g1_A002 Dark Grown 1 (DG1... 44 0.020
gb|BE356391.1|BE356391 DG1_124_E05.g1_A002 Dark Grown 1 (DG... 44 0.020
gb|BE593873.1|BE593873 WS1_103_D07.g1_A002 Water-stressed 1... 44 0.020
gb|BE594190.1|BE594190 WS1_103_D07.b1_A002 Water-stressed 1... 44 0.020
gb|BE600332.1|BE600332 PI1_95_B04.g1_A002 Pathogen induced ... 44 0.020
gb|BG049524.1|BG049524 EM1_5_B08.g1_A002 Embryo 1 (EM1) Sor... 44 0.020
gb|BG556571.1|BG556571 EM1_38_H10.g1_A002 Embryo 1 (EM1) So... 44 0.020
gb|BG558573.1|BG558573 RHIZ2_57_F01.g1_A003 Rhizome2 (RHIZ2... 44 0.020
gb|CB925894.1|CB925894 ABA1_30_G05.b1_A012 Abscisic acid-tr... 44 0.020
gb|CD204822.1|CD204822 HS1_10_F05.b1_A012 Heat-shocked seed... 44 0.020
gb|CD205748.1|CD205748 HS1_18_E05.b1_A012 Heat-shocked seed... 44 0.020
gb|CD205771.1|CD205771 HS1_18_E04.b1_A012 Heat-shocked seed... 44 0.020
gb|CD210390.1|CD210390 HS1_51_G05.b1_A012 Heat-shocked seed... 44 0.020
gb|CD224755.1|CD224755 CCC1_36_C01.b1_A007 Callus culture/c... 44 0.020
gb|CD427393.1|CD427393 SA1_30_D09.b1_A002 Salicylic acid-tr... 44 0.020
gb|DN551903.1|DN551903 pSPR-RT-MR-H1_F09_S174 pSPR Sorghum ... 44 0.020
dbj|AB084897.1| Sorghum bicolor ALDH2a mRNA for mitochondri... 44 0.020
gb|CW045878.1|CW045878 104_282_10509830_115_30224 Sorghum m... 42 0.077
gb|CW147625.1|CW147625 104_542_11139988_116_35001_016 Sorgh... 42 0.077
gb|CW147626.1|CW147626 104_542_11139988_148_35005_016 Sorgh... 42 0.077
gb|CW222885.1|CW222885 104_658_11202613_116_37181_055 Sorgh... 42 0.077
gb|CW456793.1|CW456793 fsbb001f202f01k0 Sorghum methylation... 42 0.077
gb|CW485075.1|CW485075 fsbb001f247j18k0 Sorghum methylation... 42 0.077
>gb|CN124342.1|CN124342 RHOH1_4_D05.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_4_D05_A002 3', mRNA sequence
Length = 661
Score = 765 bits (386), Expect = 0.0
Identities = 547/600 (91%), Gaps = 3/600 (0%)
Strand = Plus / Plus
Query: 6 gccggcacacgcatctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgcc 65
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 42 gccggcacacgcatctacgtgcaggaagggatctacgacgcgttcgtggagaaggccgcc 101
Query: 66 gagctcgccagcaagtccgtggtcggagacccgttcaacccgagtgtcagccaaggcccc 125
|||||||||| || || |||||||||||||||||||||||| |||||| ||||||||
Sbjct: 102 gagctcgccaagaaatcggtggtcggagacccgttcaacccgcgtgtcaatcaaggccct 161
Query: 126 caggttgacaaggaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaa 185
||||||||||||||||||||| ||||||| |||| ||||||||| || ||||||||||||
Sbjct: 162 caggttgacaaggaccagtaccagaaggttctcaagtacattgatatgggaaagcgcgaa 221
Query: 186 ggcgccacgctggtcaccggagggaagccctgcggcgacaataagggctactacatcgag 245
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 222 ggcgccacgctggtcaccggagggaagccctgcggcgacaa---gggatactacatcgag 278
Query: 246 cccaccatcttcacggacgtcaaggacgacatgacgatcgcacaggatgaaatctttggg 305
|| |||||||||||||||||||||||| ||||||||||||| || || ||||||||||||
Sbjct: 279 cctaccatcttcacggacgtcaaggacaacatgacgatcgcgcaagacgaaatctttggg 338
Query: 306 ccggtgatggctctcatgaaattcaagaccgtggaggaggtgatccagaaagcgaacaac 365
||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct: 339 ccggtgatggcgctcatgaaattcaagacggttgaggaggtgattcagaaagcgaacaac 398
Query: 366 acccggtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtg 425
|||||||||||||| || || || || |||||||||||||||||| |||||||||| ||
Sbjct: 399 acccggtacggcctagcagctggaattgtgaccaagaacatcgacatcgccaacacggta 458
Query: 426 tcgcggtccatccgcgccggcgccatctggatcaactgctacttcgcgttcgacccggac 485
|||||||||||||| || || |||||||||||||||||||||||||| |||||||| |||
Sbjct: 459 tcgcggtccatccgtgcaggtgccatctggatcaactgctacttcgcattcgaccccgac 518
Query: 486 gcgccgttcggcgggtacaagatgagcgggttcggcaaggacatgggcatggacgcgctc 545
||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct: 519 gcgccattcggggggtacaagatgagcggatttggcaaggacatgggcatggacgccctg 578
Query: 546 gacaagtacctgcagaccaagaccgtggtcactccgctgtacaacactccatggctctga 605
|| |||||| ||||||||||||||||||||||||| || |||||||| || |||||||||
Sbjct: 579 gagaagtacttgcagaccaagaccgtggtcactcctctatacaacacgccctggctctga 638
>gb|CD207558.1|CD207558 HS1_33_F04.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_33_F04_A012 3', mRNA sequence
Length = 603
Score = 735 bits (371), Expect = 0.0
Identities = 529/581 (91%), Gaps = 3/581 (0%)
Strand = Plus / Plus
Query: 25 tgcaggaagggatctacgacgagttcgtgaagaaggccgccgagctcgccagcaagtccg 84
||||||||||||||||||||| ||||||| ||||||||||||||||||||| || || |
Sbjct: 1 tgcaggaagggatctacgacgcgttcgtggagaaggccgccgagctcgccaagaaatcgg 60
Query: 85 tggtcggagacccgttcaacccgagtgtcagccaaggcccccaggttgacaaggaccagt 144
||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||
Sbjct: 61 tggtcggagacccgttcaacccgcgtgtcaatcaaggccctcaggttgacaaggaccagt 120
Query: 145 acgagaaggtcctcaggtacattgacatcggaaagcgcgaaggcgccacgctggtcaccg 204
|| ||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 121 accagaaggttctcaagtacattgatatcggaaagcgcgaaggcgccacgctggtcaccg 180
Query: 205 gagggaagccctgcggcgacaataagggctactacatcgagcccaccatcttcacggacg 264
|||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||
Sbjct: 181 gagggaagccctgcggcgacaa---gggatactacatcgagcctaccatcttcacggacg 237
Query: 265 tcaaggacgacatgacgatcgcacaggatgaaatctttgggccggtgatggctctcatga 324
|||||||| ||||||||||||| || || ||||||||||||||||||||||| |||||||
Sbjct: 238 tcaaggacaacatgacgatcgcgcaagacgaaatctttgggccggtgatggcgctcatga 297
Query: 325 aattcaagaccgtggaggaggtgatccagaaagcgaacaacacccggtacggcctggccg 384
|||||||||| || ||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct: 298 aattcaagacggttgaggaggtgattcagaaagcgaacaacacccggtacggcctagcag 357
Query: 385 ccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccg 444
| || || |||||||||||||||||| |||||||||| || |||||||||||||| || |
Sbjct: 358 ctggaattgtgaccaagaacatcgacatcgccaacacggtatcgcggtccatccgtgcag 417
Query: 445 gcgccatctggatcaactgctacttcgcgttcgacccggacgcgccgttcggcgggtaca 504
| |||||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||
Sbjct: 418 gtgccatctggatcaactgctacttcgcattcgaccccgacgcgccattcggggggtaca 477
Query: 505 agatgagcgggttcggcaaggacatgggcatggacgcgctcgacaagtacctgcagacca 564
|||||||||| || ||||||||||||||||||||||| || || |||||| |||||||||
Sbjct: 478 agatgagcggatttggcaaggacatgggcatggacgccctggagaagtacttgcagacca 537
Query: 565 agaccgtggtcactccgctgtacaacactccatggctctga 605
|||||||||||||||| || |||||||| || |||||||||
Sbjct: 538 agaccgtggtcactcctctatacaacacgccctggctctga 578
>gb|BE362147.1|BE362147 DG1_84_D06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 643
Score = 731 bits (369), Expect = 0.0
Identities = 535/587 (91%), Gaps = 5/587 (0%)
Strand = Plus / Plus
Query: 6 gccggcacacgcatctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgcc 65
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 58 gccggcacacgcatctacgtgcaggaagggatctacgacgcgttcgtggagaaggccgcc 117
Query: 66 gagctcgccagcaagtccgtggtcggagacccgttcaacccgagtgtcagccaaggcccc 125
|||||||||| || || |||||||||||||||||||||||| |||||| ||||||||
Sbjct: 118 gagctcgccaagaaatcggtggtcggagacccgttcaacccgcgtgtcaatcaaggccct 177
Query: 126 caggttgacaaggaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaa 185
||||||||||||||||||||| ||||||| |||| ||||||||| || ||||||||||||
Sbjct: 178 caggttgacaaggaccagtaccagaaggttctcaagtacattgatatgggaaagcgcgaa 237
Query: 186 ggcgccacgctggtcaccggagggaagccctgcggcgacaataagggctactacatcgag 245
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 238 ggcgccacgctggtcaccggagggaagccctgcggcgacaa---gggatactacatcgag 294
Query: 246 cccaccatcttcacggacgtcaaggacgacatgacgatcgcacaggatgaaatctttggg 305
|| |||||||||||||||||||||||| ||||||||||||| || || ||||||||||||
Sbjct: 295 cctaccatcttcacggacgtcaaggacaacatgacgatcgcgcaagacgaaatctttggg 354
Query: 306 ccggtgatggctctcatgaaattcaagaccgtggaggaggtgatccagaaagcgaacaac 365
||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct: 355 ccggtgatggcgctcatgaaattcaagacggttgaggaggtgattcagaaagcgaacaac 414
Query: 366 acccggtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtg 425
|||||||||||||| || || || || |||||||||||||||||| |||||||||| ||
Sbjct: 415 acccggtacggcctagcagctggaattgtgaccaagaacatcgacatcgccaacacggta 474
Query: 426 tcgcggtccatccgcgccggcgccatctggatcaactgctacttcgcgttcgacccggac 485
|||||||||||||| || || |||||||||||||||||||||||||| |||||||| |||
Sbjct: 475 tcgcggtccatccgtgcaggtgccatctggatcaactgctacttcgcattcgaccccgac 534
Query: 486 gcgccgttcggcgggtacaagatgagcgggttcggcaaggacatgggcatggacgcgctc 545
||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct: 535 gcgccattcggggggtacaagatgagcggatttggcaaggacatgggcatggacgc-ctg 593
Query: 546 gacaagtacctgcagaccaagaccgtggtcactccgctgtacaacac 592
|| |||||| |||||||||||| |||||||||||| || ||||||||
Sbjct: 594 gagaagtacttgcagaccaaga-cgtggtcactcctctatacaacac 639
>gb|BE360262.1|BE360262 DG1_62_B04.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 587
Score = 718 bits (362), Expect = 0.0
Identities = 523/576 (90%), Gaps = 3/576 (0%)
Strand = Plus / Minus
Query: 30 gaagggatctacgacgagttcgtgaagaaggccgccgagctcgccagcaagtccgtggtc 89
|||||||||||||||| ||||||| ||||||||||||||||||||| || || ||||||
Sbjct: 587 gaagggatctacgacgcgttcgtggagaaggccgccgagctcgccaagaaatcggtggtc 528
Query: 90 ggagacccgttcaacccgagtgtcagccaaggcccccaggttgacaaggaccagtacgag 149
|||||||||||||||||| |||||| |||||||| ||||||||||||||||||||| ||
Sbjct: 527 ggagacccgttcaacccgcgtgtcaatcaaggccctcaggttgacaaggaccagtaccag 468
Query: 150 aaggtcctcaggtacattgacatcggaaagcgcgaaggcgccacgctggtcaccggaggg 209
||||| |||| ||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 467 aaggttctcaagtacattgatatgggaaagcgcgaaggcgccacgctggtcaccggaggg 408
Query: 210 aagccctgcggcgacaataagggctactacatcgagcccaccatcttcacggacgtcaag 269
||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct: 407 aagccctgcggcgacaa---gggatactacatcgagcctaccatcttcacggacgtcaag 351
Query: 270 gacgacatgacgatcgcacaggatgaaatctttgggccggtgatggctctcatgaaattc 329
||| ||||||||||||| || || ||||||||||||||||||||||| ||||||||||||
Sbjct: 350 gacaacatgacgatcgcgcaagacgaaatctttgggccggtgatggcgctcatgaaattc 291
Query: 330 aagaccgtggaggaggtgatccagaaagcgaacaacacccggtacggcctggccgccggc 389
||||| || ||||||||||| ||||||||||||||||||||||||||||| || || ||
Sbjct: 290 aagacggttgaggaggtgattcagaaagcgaacaacacccggtacggcctagcagctgga 231
Query: 390 atcgtgaccaagaacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccggcgcc 449
|| |||||||||||||||||| |||||||||| || |||||||||||||| || || |||
Sbjct: 230 attgtgaccaagaacatcgacatcgccaacacggtatcgcggtccatccgtgcaggtgcc 171
Query: 450 atctggatcaactgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatg 509
||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||
Sbjct: 170 atctggatcaactgctacttcgcattcgaccccgacgcgccattcggggggtacaagatg 111
Query: 510 agcgggttcggcaaggacatgggcatggacgcgctcgacaagtacctgcagaccaagacc 569
||||| || ||||||||||||||||||||||| || || |||||| ||||||||||||||
Sbjct: 110 agcggatttggcaaggacatgggcatggacgccctggagaagtacttgcagaccaagacc 51
Query: 570 gtggtcactccgctgtacaacactccatggctctga 605
||||||||||| || |||||||| || |||||||||
Sbjct: 50 gtggtcactcctctatacaacacgccctggctctga 15
>gb|BG356773.1|BG356773 OV2_9_G07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 656
Score = 607 bits (306), Expect = e-172
Identities = 437/480 (91%), Gaps = 3/480 (0%)
Strand = Plus / Plus
Query: 126 caggttgacaaggaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaa 185
||||||||||||||||||||| ||||||| |||| ||||||||| || ||||||||||||
Sbjct: 2 caggttgacaaggaccagtaccagaaggttctcaagtacattgatatgggaaagcgcgaa 61
Query: 186 ggcgccacgctggtcaccggagggaagccctgcggcgacaataagggctactacatcgag 245
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 62 ggcgccacgctggtcaccggagggaagccctgcggcgacaa---gggatactacatcgag 118
Query: 246 cccaccatcttcacggacgtcaaggacgacatgacgatcgcacaggatgaaatctttggg 305
|| |||||||||||||||||||||||| ||||||||||||| || || ||||||||||||
Sbjct: 119 cctaccatcttcacggacgtcaaggacaacatgacgatcgcgcaagacgaaatctttggg 178
Query: 306 ccggtgatggctctcatgaaattcaagaccgtggaggaggtgatccagaaagcgaacaac 365
||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct: 179 ccggtgatggcgctcatgaaattcaagacggttgaggaggtgattcagaaagcgaacaac 238
Query: 366 acccggtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtg 425
|||||||||||||| || || || || |||||||||||||||||| |||||||||| ||
Sbjct: 239 acccggtacggcctagcagctggaattgtgaccaagaacatcgacatcgccaacacggta 298
Query: 426 tcgcggtccatccgcgccggcgccatctggatcaactgctacttcgcgttcgacccggac 485
|||||||||||||| || || |||||||||||||||||||||||||| |||||||| |||
Sbjct: 299 tcgcggtccatccgtgcaggtgccatctggatcaactgctacttcgcattcgaccccgac 358
Query: 486 gcgccgttcggcgggtacaagatgagcgggttcggcaaggacatgggcatggacgcgctc 545
||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct: 359 gcgccattcggggggtacaagatgagcggatttggcaaggacatgggcatggacgccctg 418
Query: 546 gacaagtacctgcagaccaagaccgtggtcactccgctgtacaacactccatggctctga 605
|| |||||| ||||||||||||||||||||||||| || |||||||| || |||||||||
Sbjct: 419 gagaagtacttgcagaccaagaccgtggtcactcctctatacaacacgccctggctctga 478
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 648 aaaacaagaagaaacatgtcttgta 672
|||||||||||||||||||||||||
Sbjct: 511 aaaacaagaagaaacatgtcttgta 535
>gb|CN127948.1|CN127948 RHOH1_26_C08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_26_C08_A002 3', mRNA sequence
Length = 736
Score = 603 bits (304), Expect = e-170
Identities = 468/522 (89%), Gaps = 3/522 (0%)
Strand = Plus / Plus
Query: 84 gtggtcggagacccgttcaacccgagtgtcagccaaggcccccaggttgacaaggaccag 143
||||||||||||| |||||||||| |||||| |||||||| ||||||||||||||||||
Sbjct: 20 gtggtcggagacctgttcaacccgcgtgtcaatcaaggccctcaggttgacaaggaccag 79
Query: 144 tacgagaaggtcctcaggtacattgacatcggaaagcgcgaaggcgccacgctggtcacc 203
||| ||||||| |||| ||||||||| || |||||||||||||||||||||||||||||
Sbjct: 80 taccagaaggttctcaagtacattgatatgggaaagcgcgaaggcgccacgctggtcact 139
Query: 204 ggagggaagccctgcggcgacaataagggctactacatcgagcccaccatcttcacggac 263
||||||||||| || |||||||| ||| || ||||||||||| ||||||||||||||
Sbjct: 140 ggagggaagccttggggcgacaa---gggatattacatcgagcctaccatcttcacggag 196
Query: 264 gtcaaggacgacatgacgatcgcacaggatgaaatctttgggccggtgatggctctcatg 323
||||||||| ||||||||||||| || || ||||||||||||||||||||||| ||||||
Sbjct: 197 gtcaaggacaacatgacgatcgcgcaagacgaaatctttgggccggtgatggcgctcatg 256
Query: 324 aaattcaagaccgtggaggaggtgatccagaaagcgaacaacacccggtacggcctggcc 383
||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 257 aaattcaagacggttgaggaggtgattcagaaagcgaacaacacccggtacggcctagca 316
Query: 384 gccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgcggtccatccgcgcc 443
|| || || |||||||||||||||||| |||||||||| || |||||||||||||| ||
Sbjct: 317 gctggaattgtgaccaagaacatcgacatcgccaacacggtatcgcggtccatccgtgca 376
Query: 444 ggcgccatctggatcaactgctacttcgcgttcgacccggacgcgccgttcggcgggtac 503
|| ||||||||||||||||| |||||||| |||||||| |||||||| ||||| ||||||
Sbjct: 377 ggtgccatctggatcaactgttacttcgcattcgaccccgacgcgccattcggggggtac 436
Query: 504 aagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaagtacctgcagacc 563
||||||||||| || ||||||||||||||||||||||| || || |||||| ||||||||
Sbjct: 437 aagatgagcggatttggcaaggacatgggcatggacgccctggagaagtacttgcagacc 496
Query: 564 aagaccgtggtcactccgctgtacaacactccatggctctga 605
||||||||||||||||| || |||||||| || |||||||||
Sbjct: 497 aagaccgtggtcactcctctatacaacacgccctggctctga 538
Score = 44.1 bits (22), Expect = 0.020
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 760 aacaataaagacatgtttcgga 781
||||||||||||||||||||||
Sbjct: 708 aacaataaagacatgtttcgga 729
Score = 42.1 bits (21), Expect = 0.077
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 648 aaaacaagaagaaacatgtcttgta 672
|||||||||||||||||| ||||||
Sbjct: 571 aaaacaagaagaaacatgccttgta 595
>gb|BG356871.1|BG356871 OV2_11_A07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 485
Score = 579 bits (292), Expect = e-163
Identities = 414/454 (91%), Gaps = 3/454 (0%)
Strand = Plus / Plus
Query: 6 gccggcacacgcatctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgcc 65
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 35 gccggcacacgcatctacgtgcaggaagggatctacgacgcgttcgtggagaaggccgcc 94
Query: 66 gagctcgccagcaagtccgtggtcggagacccgttcaacccgagtgtcagccaaggcccc 125
|||||||||| || || |||||||||||||||||||||||| |||||| ||||||||
Sbjct: 95 gagctcgccaagaaatcggtggtcggagacccgttcaacccgcgtgtcaatcaaggccct 154
Query: 126 caggttgacaaggaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaa 185
||||||||||||||||||||| ||||||| |||| ||||||||| || ||||||||||||
Sbjct: 155 caggttgacaaggaccagtaccagaaggttctcaagtacattgatatgggaaagcgcgaa 214
Query: 186 ggcgccacgctggtcaccggagggaagccctgcggcgacaataagggctactacatcgag 245
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 215 ggcgccacgctggtcaccggagggaagccctgcggcgac---aagggatactacatcgag 271
Query: 246 cccaccatcttcacggacgtcaaggacgacatgacgatcgcacaggatgaaatctttggg 305
|| |||||||||||||||||||||||| ||||||||||||| || || ||||||||||||
Sbjct: 272 cctaccatcttcacggacgtcaaggacaacatgacgatcgcgcaagacgaaatctttggg 331
Query: 306 ccggtgatggctctcatgaaattcaagaccgtggaggaggtgatccagaaagcgaacaac 365
||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct: 332 ccggtgatggcgctcatgaaattcaagacggttgaggaggtgattcagaaagcgaacaac 391
Query: 366 acccggtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtg 425
|||||||||||||| || || || || |||||||||||||||||| |||||||||| ||
Sbjct: 392 acccggtacggcctagcagctggaattgtgaccaagaacatcgacatcgccaacacggta 451
Query: 426 tcgcggtccatccgcgccggcgccatctggatca 459
|||||||||||||| || || ||||| |||||||
Sbjct: 452 tcgcggtccatccgtgcaggtgccatatggatca 485
>gb|CB926564.1|CB926564 ABA1_2_A01.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_2_A01_A012 3', mRNA sequence
Length = 645
Score = 579 bits (292), Expect = e-163
Identities = 417/458 (91%), Gaps = 3/458 (0%)
Strand = Plus / Plus
Query: 148 agaaggtcctcaggtacattgacatcggaaagcgcgaaggcgccacgctggtcaccggag 207
||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2 agaaggttctcaagtacattgatatcggaaagcgcgaaggcgccacgctggtcaccggag 61
Query: 208 ggaagccctgcggcgacaataagggctactacatcgagcccaccatcttcacggacgtca 267
||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||
Sbjct: 62 ggaagccctgcggcgacaa---gggatactacatcgagcctaccatcttcacggacgtca 118
Query: 268 aggacgacatgacgatcgcacaggatgaaatctttgggccggtgatggctctcatgaaat 327
||||| ||||||||||||| || || ||||||||||||||||||||||| ||||||||||
Sbjct: 119 aggacaacatgacgatcgcgcaagacgaaatctttgggccggtgatggcgctcatgaaat 178
Query: 328 tcaagaccgtggaggaggtgatccagaaagcgaacaacacccggtacggcctggccgccg 387
||||||| || ||||||||||| ||||||||||||||||||||||||||||| || || |
Sbjct: 179 tcaagacggttgaggaggtgattcagaaagcgaacaacacccggtacggcctagcagctg 238
Query: 388 gcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccggcg 447
| || |||||||||||||||||| |||||||||| || |||||||||||||| || || |
Sbjct: 239 gaattgtgaccaagaacatcgacatcgccaacacggtatcgcggtccatccgtgcaggtg 298
Query: 448 ccatctggatcaactgctacttcgcgttcgacccggacgcgccgttcggcgggtacaaga 507
||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||
Sbjct: 299 ccatctggatcaactgctacttcgcattcgaccccgacgcgccattcggggggtacaaga 358
Query: 508 tgagcgggttcggcaaggacatgggcatggacgcgctcgacaagtacctgcagaccaaga 567
||||||| || ||||||||||||||||||||||| || || |||||| ||||||||||||
Sbjct: 359 tgagcggatttggcaaggacatgggcatggacgccctggagaagtacttgcagaccaaga 418
Query: 568 ccgtggtcactccgctgtacaacactccatggctctga 605
||||||||||||| || |||||||| || |||||||||
Sbjct: 419 ccgtggtcactcctctatacaacacgccctggctctga 456
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 648 aaaacaagaagaaacatgtcttgta 672
|||||||||||||||||||||||||
Sbjct: 489 aaaacaagaagaaacatgtcttgta 513
Score = 40.1 bits (20), Expect = 0.31
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 755 ttcagaacaataaagacatgtttc 778
|||| |||||||||||||||||||
Sbjct: 622 ttcaaaacaataaagacatgtttc 645
>gb|BE362939.2|BE362939 DG1_91_C11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 430
Score = 535 bits (270), Expect = e-150
Identities = 371/404 (91%), Gaps = 3/404 (0%)
Strand = Plus / Plus
Query: 6 gccggcacacgcatctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgcc 65
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 28 gccggcacacgcatctacgtgcaggaagggatctacgacgcgttcgtggagaaggccgcc 87
Query: 66 gagctcgccagcaagtccgtggtcggagacccgttcaacccgagtgtcagccaaggcccc 125
|||||||||| || || |||||||||||||||||||||||| |||||| ||||||||
Sbjct: 88 gagctcgccaagaaatcggtggtcggagacccgttcaacccgcgtgtcaatcaaggccct 147
Query: 126 caggttgacaaggaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaa 185
||||||||||||||||||||| ||||||| |||| ||||||||| || ||||||||||||
Sbjct: 148 caggttgacaaggaccagtaccagaaggttctcaagtacattgatatgggaaagcgcgaa 207
Query: 186 ggcgccacgctggtcaccggagggaagccctgcggcgacaataagggctactacatcgag 245
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 208 ggcgccacgctggtcaccggagggaagccctgcggcgac---aagggatactacatcgag 264
Query: 246 cccaccatcttcacggacgtcaaggacgacatgacgatcgcacaggatgaaatctttggg 305
|| |||||||||||||||||||||||| ||||||||||||| || || ||||||||||||
Sbjct: 265 cctaccatcttcacggacgtcaaggacaacatgacgatcgcgcaagacgaaatctttggg 324
Query: 306 ccggtgatggctctcatgaaattcaagaccgtggaggaggtgatccagaaagcgaacaac 365
||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct: 325 ccggtgatggcgctcatgaaattcaagacggttgaggaggtgattcagaaagcgaacaac 384
Query: 366 acccggtacggcctggccgccggcatcgtgaccaagaacatcga 409
|||||||||||||| || || || || |||||||||||||||||
Sbjct: 385 acccggtacggcctagcagctggaattgtgaccaagaacatcga 428
>gb|CF761302.1|CF761302 DSAF1_73_E08.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_73_E08_A011 5', mRNA sequence
Length = 420
Score = 525 bits (265), Expect = e-147
Identities = 384/423 (90%), Gaps = 3/423 (0%)
Strand = Plus / Plus
Query: 138 gaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaaggcgccacgctg 197
||||||||| ||||||| |||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 1 gaccagtaccagaaggttctcaagtacattgatatcggaaagcgcgaaggcgccacgctg 60
Query: 198 gtcaccggagggaagccctgcggcgacaataagggctactacatcgagcccaccatcttc 257
||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||
Sbjct: 61 gtcaccggagggaagccctgcggcgacaa---gggatactacatcgagcctaccatcttc 117
Query: 258 acggacgtcaaggacgacatgacgatcgcacaggatgaaatctttgggccggtgatggct 317
||||||||||||||| ||||||||||||| || || |||||||||||||||||||||||
Sbjct: 118 acggacgtcaaggacaacatgacgatcgcgcaagacgaaatctttgggccggtgatggcg 177
Query: 318 ctcatgaaattcaagaccgtggaggaggtgatccagaaagcgaacaacacccggtacggc 377
||||||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||
Sbjct: 178 ctcatgaaattcaagacggttgaggaggtgattcagaaagcaaacaacacccggtacggc 237
Query: 378 ctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgcggtccatc 437
|| || || || || |||||||||||||||||| |||||||||| || ||||||||||||
Sbjct: 238 ctagcagctggaattgtgaccaagaacatcgacatcgccaacacggtatcgcggtccatc 297
Query: 438 cgcgccggcgccatctggatcaactgctacttcgcgttcgacccggacgcgccgttcggc 497
|| || || |||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct: 298 cgtgcaggtgccatctggatcaactgctacttcgcattcgaccccgacgcgccattcggg 357
Query: 498 gggtacaagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaagtacctg 557
||||||||||||||||| || ||||||||||||||||||||||| || || |||||| ||
Sbjct: 358 gggtacaagatgagcggatttggcaaggacatgggcatggacgccctggagaagtacttg 417
Query: 558 cag 560
|||
Sbjct: 418 cag 420
>gb|BE359575.1|BE359575 DG1_54_D04.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 417
Score = 511 bits (258), Expect = e-143
Identities = 380/420 (90%), Gaps = 3/420 (0%)
Strand = Plus / Plus
Query: 35 gatctacgacgagttcgtgaagaaggccgccgagctcgccagcaagtccgtggtcggaga 94
||||||||||| ||||||| |||||||||| |||||||||| || || |||||||||||
Sbjct: 1 gatctacgacgcgttcgtggagaaggccgctgagctcgccaagaaatcggtggtcggaga 60
Query: 95 cccgttcaacccgagtgtcagccaaggcccccaggttgacaaggaccagtacgagaaggt 154
||||||||||||| |||||| |||||||| ||||||||||||||||||||| |||||||
Sbjct: 61 cccgttcaacccgcgtgtcaatcaaggccctcaggttgacaaggaccagtaccagaaggt 120
Query: 155 cctcaggtacattgacatcggaaagcgcgaaggcgccacgctggtcaccggagggaagcc 214
|||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tctcaagtacattgatatgggaaagcgcgaaggcgccacgctggtcaccggagggaagcc 180
Query: 215 ctgcggcgacaataagggctactacatcgagcccaccatcttcacggacgtcaaggacga 274
|||||||||||| ||| |||||||||||||| |||||||||||||||||||||||| |
Sbjct: 181 ctgcggcgacaa---gggatactacatcgagcctaccatcttcacggacgtcaaggacaa 237
Query: 275 catgacgatcgcacaggatgaaatctttgggccggtgatggctctcatgaaattcaagac 334
|||||||||||| || || ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 238 catgacgatcgcgcaagacgaaatctttgggccggtgatggcgctcatgaaattcaagac 297
Query: 335 cgtggaggaggtgatccagaaagcgaacaacacccggtacggcctggccgccggcatcgt 394
|| ||||||||||| ||||||||||||||||||||||||||||| || || || || ||
Sbjct: 298 ggttgaggaggtgattcagaaagcgaacaacacccggtacggcctagcagctggaattgt 357
Query: 395 gaccaagaacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccggcgccatctg 454
|||||||||||||||| |||||||||| || |||||||||||||| || || ||||||||
Sbjct: 358 gaccaagaacatcgacatcgccaacacggtatcgcggtccatccgtgcaggtgccatctg 417
>gb|BE356223.1|BE356223 DG1_123_E04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 432
Score = 444 bits (224), Expect = e-123
Identities = 323/356 (90%)
Strand = Plus / Plus
Query: 250 ccatcttcacggacgtcaaggacgacatgacgatcgcacaggatgaaatctttgggccgg 309
||||||||||||||||||||||| ||||||||||||| || || ||||||||||||||||
Sbjct: 1 ccatcttcacggacgtcaaggacaacatgacgatcgcgcaagacgaaatctttgggccgg 60
Query: 310 tgatggctctcatgaaattcaagaccgtggaggaggtgatccagaaagcgaacaacaccc 369
||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct: 61 tgatggcgctcatgaaattcaagacggttgaggaggtgattcagaaagcgaacaacaccc 120
Query: 370 ggtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgc 429
|||||||||| || || || || |||||||||||||||||| |||||||||| || ||||
Sbjct: 121 ggtacggcctagcagctggaattgtgaccaagaacatcgacatcgccaacacggtatcgc 180
Query: 430 ggtccatccgcgccggcgccatctggatcaactgctacttcgcgttcgacccggacgcgc 489
|||||||||| || || |||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 181 ggtccatccgtgcaggtgccatctggatcaactgctacttcgcattcgaccccgacgcgc 240
Query: 490 cgttcggcgggtacaagatgagcgggttcggcaaggacatgggcatggacgcgctcgaca 549
| ||||| ||||||||||||||||| || ||||||||||||||||||||||| || || |
Sbjct: 241 cattcggggggtacaagatgagcggatttggcaaggacatgggcatggacgccctggaga 300
Query: 550 agtacctgcagaccaagaccgtggtcactccgctgtacaacactccatggctctga 605
||||| ||||||||||||||||||||||||| || |||||||| || |||||||||
Sbjct: 301 agtacttgcagaccaagaccgtggtcactcctctatacaacacgccctggctctga 356
>gb|BI098006.1|BI098006 IP1_30_H05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 496
Score = 349 bits (176), Expect = 2e-094
Identities = 266/296 (89%)
Strand = Plus / Plus
Query: 310 tgatggctctcatgaaattcaagaccgtggaggaggtgatccagaaagcgaacaacaccc 369
||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct: 1 tgatggcgctcatgaaattcaagacggttgaggaggtgattcagaaagcgaacaacaccc 60
Query: 370 ggtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgccaacaccgtgtcgc 429
|||||| ||| || || || || |||||||||||||||||| |||||||||| || ||||
Sbjct: 61 ggtacgtcctagcagctggaattgtgaccaagaacatcgacatcgccaacacggtatcgc 120
Query: 430 ggtccatccgcgccggcgccatctggatcaactgctacttcgcgttcgacccggacgcgc 489
|||||||||| || || |||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 121 ggtccatccgtgcaggtgccatctggatcaactgctacttcgcattcgaccccgacgcgc 180
Query: 490 cgttcggcgggtacaagatgagcgggttcggcaaggacatgggcatggacgcgctcgaca 549
| ||||| ||||||||||||||||| || ||||||||||||||||||||||| || || |
Sbjct: 181 cattcggggggtacaagatgagcggatttggcaaggacatgggcatggacgccctggaga 240
Query: 550 agtacctgcagaccaagaccgtggtcactccgctgtacaacactccatggctctga 605
||||| ||||||||||||||||||||||||| || |||||||| || |||||||||
Sbjct: 241 agtacttgcagaccaagaccgtggtcactcctctatacaacacgccctggctctga 296
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 648 aaaacaagaagaaacatgtcttgta 672
|||||||||||||||||||||||||
Sbjct: 329 aaaacaagaagaaacatgtcttgta 353
Score = 44.1 bits (22), Expect = 0.020
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 760 aacaataaagacatgtttcgga 781
||||||||||||||||||||||
Sbjct: 467 aacaataaagacatgtttcgga 488
>gb|CW040137.1|CW040137 104_273_10505918_114_30266 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505918, DNA
sequence
Length = 546
Score = 323 bits (163), Expect = 1e-086
Identities = 241/267 (90%)
Strand = Plus / Minus
Query: 339 gaggaggtgatccagaaagcgaacaacacccggtacggcctggccgccggcatcgtgacc 398
||||||||||| ||||||||||||||||||||||||||||| || || || || ||||||
Sbjct: 314 gaggaggtgattcagaaagcgaacaacacccggtacggcctagcagctggaattgtgacc 255
Query: 399 aagaacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccggcgccatctggatc 458
|||||||||||| |||||||||| || |||||||||||||| || || ||||||||||||
Sbjct: 254 aagaacatcgacatcgccaacacggtatcgcggtccatccgtgcaggtgccatctggatc 195
Query: 459 aactgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttc 518
|||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||| ||
Sbjct: 194 aactgctacttcgcattcgaccccgacgcgccattcggggggtacaagatgagcggattt 135
Query: 519 ggcaaggacatgggcatggacgcgctcgacaagtacctgcagaccaagaccgtggtcact 578
||||||||||||||||||||||| || || |||||| |||||||||||||||||||||||
Sbjct: 134 ggcaaggacatgggcatggacgccctggagaagtacttgcagaccaagaccgtggtcact 75
Query: 579 ccgctgtacaacactccatggctctga 605
|| || |||||||| || |||||||||
Sbjct: 74 cctctatacaacacgccctggctctga 48
Score = 89.7 bits (45), Expect = 4e-016
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 268 aggacgacatgacgatcgcacaggatgaaatctttgggccggtgatggctctcatgaaat 327
||||| ||||||||||||| || || ||||||||||||||||||||||| ||||||||||
Sbjct: 474 aggacaacatgacgatcgcgcaagacgaaatctttgggccggtgatggcgctcatgaaat 415
Query: 328 tcaag 332
|||||
Sbjct: 414 tcaag 410
>gb|CD231584.1|CD231584 SS1_22_D07.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_22_D07_A012 3', mRNA sequence
Length = 588
Score = 323 bits (163), Expect = 1e-086
Identities = 241/267 (90%)
Strand = Plus / Plus
Query: 339 gaggaggtgatccagaaagcgaacaacacccggtacggcctggccgccggcatcgtgacc 398
||||||||||| ||||||||||||||||||||||||||||| || || || || ||||||
Sbjct: 299 gaggaggtgattcagaaagcgaacaacacccggtacggcctagcagctggaattgtgacc 358
Query: 399 aagaacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccggcgccatctggatc 458
|||||||||||| |||||||||| || |||||||||||||| || || ||||||||||||
Sbjct: 359 aagaacatcgacatcgccaacacggtatcgcggtccatccgtgcaggtgccatctggatc 418
Query: 459 aactgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttc 518
|||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||| ||
Sbjct: 419 aactgctacttcgcattcgaccccgacgcgccattcggggggtacaagatgagcggattt 478
Query: 519 ggcaaggacatgggcatggacgcgctcgacaagtacctgcagaccaagaccgtggtcact 578
||||||||||||||||||||||| || || |||||| |||||||||||||||||||||||
Sbjct: 479 ggcaaggacatgggcatggacgccctggagaagtacttgcagaccaagaccgtggtcact 538
Query: 579 ccgctgtacaacactccatggctctga 605
|| || |||||||| || |||||||||
Sbjct: 539 cctctatacaacacgccctggctctga 565
Score = 293 bits (148), Expect = 1e-077
Identities = 192/206 (93%), Gaps = 3/206 (1%)
Strand = Plus / Plus
Query: 127 aggttgacaaggaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaag 186
|||||||||||||||||||| ||||||| |||| ||||||||| ||||||||||||||||
Sbjct: 1 aggttgacaaggaccagtaccagaaggttctcaagtacattgatatcggaaagcgcgaag 60
Query: 187 gcgccacgctggtcaccggagggaagccctgcggcgacaataagggctactacatcgagc 246
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 61 gcgccacgctggtcaccggagggaagccctgcggcgac---aagggatactacatcgagc 117
Query: 247 ccaccatcttcacggacgtcaaggacgacatgacgatcgcacaggatgaaatctttgggc 306
| |||||||||||||||||||||||| ||||||||||||| || || |||||||||||||
Sbjct: 118 ctaccatcttcacggacgtcaaggacaacatgacgatcgcgcaagacgaaatctttgggc 177
Query: 307 cggtgatggctctcatgaaattcaag 332
|||||||||| |||||||||||||||
Sbjct: 178 cggtgatggcgctcatgaaattcaag 203
>gb|BE359268.1|BE359268 DG1_39_A07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 247
Score = 319 bits (161), Expect = 2e-085
Identities = 224/245 (91%)
Strand = Plus / Plus
Query: 294 gaaatctttgggccggtgatggctctcatgaaattcaagaccgtggaggaggtgatccag 353
||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| |||
Sbjct: 3 gaaatctttgggccggtgatggcgctcatgaaattcaagacggttgaggaggtgattcag 62
Query: 354 aaagcgaacaacacccggtacggcctggccgccggcatcgtgaccaagaacatcgacgtc 413
|||||||||||||||||||||||||| || || || || |||||||||||||||||| ||
Sbjct: 63 aaagcgaacaacacccggtacggcctagcagctggaattgtgaccaagaacatcgacatc 122
Query: 414 gccaacaccgtgtcgcggtccatccgcgccggcgccatctggatcaactgctacttcgcg 473
|||||||| || |||||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 123 gccaacacggtatcgcggtccatccgtgcaggtgccatctggatcaactgctacttcgca 182
Query: 474 ttcgacccggacgcgccgttcggcgggtacaagatgagcgggttcggcaaggacatgggc 533
|||||||| |||||||| ||||| ||||||||||||||||| || |||||||||||||||
Sbjct: 183 ttcgaccccgacgcgccattcggggggtacaagatgagcggatttggcaaggacatgggc 242
Query: 534 atgga 538
|||||
Sbjct: 243 atgga 247
>gb|BG052626.1|BG052626 RHIZ2_27_C02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 416
Score = 240 bits (121), Expect = 2e-061
Identities = 190/213 (89%)
Strand = Plus / Plus
Query: 393 gtgaccaagaacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccggcgccatc 452
|||||||||||||| ||| |||||||||| || |||||||||||||| || || ||||||
Sbjct: 21 gtgaccaagaacatggacatcgccaacacggtatcgcggtccatccgtgcaggtgccatc 80
Query: 453 tggatcaactgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagc 512
||||||||||| |||||||| |||||||| || ||||| ||||| |||||||||||||||
Sbjct: 81 tggatcaactgatacttcgcattcgaccccgatgcgccattcggggggtacaagatgagc 140
Query: 513 gggttcggcaaggacatgggcatggacgcgctcgacaagtacctgcagaccaagaccgtg 572
|| || ||||||||||||||||||||||| || || |||||| |||||||||||||||||
Sbjct: 141 ggatttggcaaggacatgggcatggacgccctggagaagtacttgcagaccaagaccgtg 200
Query: 573 gtcactccgctgtacaacactccatggctctga 605
|||||||| || |||||||| || |||||||||
Sbjct: 201 gtcactcctctatacaacacgccctggctctga 233
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 648 aaaacaagaagaaacatgtcttgta 672
|||||||||||||||||||||||||
Sbjct: 267 aaaacaagaagaaacatgtcttgta 291
>gb|CW222362.1|CW222362 104_657_11202334_116_37451_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202334, DNA
sequence
Length = 651
Score = 204 bits (103), Expect = 9e-051
Identities = 135/145 (93%), Gaps = 3/145 (2%)
Strand = Plus / Minus
Query: 126 caggttgacaaggaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaa 185
||||||||||||||||||||| ||||||| |||| ||||||||| || ||||||||||||
Sbjct: 411 caggttgacaaggaccagtaccagaaggttctcaagtacattgatatgggaaagcgcgaa 352
Query: 186 ggcgccacgctggtcaccggagggaagccctgcggcgacaataagggctactacatcgag 245
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 351 ggcgccacgctggtcaccggagggaagccctgcggcgac---aagggatactacatcgag 295
Query: 246 cccaccatcttcacggacgtcaagg 270
|| ||||||||||||||||||||||
Sbjct: 294 cctaccatcttcacggacgtcaagg 270
Score = 168 bits (85), Expect = 5e-040
Identities = 115/125 (92%)
Strand = Plus / Minus
Query: 6 gccggcacacgcatctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgcc 65
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 629 gccggcacacgcatctacgtgcaggaagggatctacgacgcgttcgtggagaaggccgcc 570
Query: 66 gagctcgccagcaagtccgtggtcggagacccgttcaacccgagtgtcagccaaggcccc 125
|||||||||| || || |||||||||||||||||||||||| |||||| ||||||||
Sbjct: 569 gagctcgccaagaaatcggtggtcggagacccgttcaacccgcgtgtcaatcaaggccct 510
Query: 126 caggt 130
|||||
Sbjct: 509 caggt 505
Score = 89.7 bits (45), Expect = 4e-016
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 268 aggacgacatgacgatcgcacaggatgaaatctttgggccggtgatggctctcatgaaat 327
||||| ||||||||||||| || || ||||||||||||||||||||||| ||||||||||
Sbjct: 166 aggacaacatgacgatcgcgcaagacgaaatctttgggccggtgatggcgctcatgaaat 107
Query: 328 tcaag 332
|||||
Sbjct: 106 tcaag 102
>gb|CW260402.1|CW260402 104_727_11228947_148_35199_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228947, DNA
sequence
Length = 606
Score = 204 bits (103), Expect = 9e-051
Identities = 135/145 (93%), Gaps = 3/145 (2%)
Strand = Plus / Minus
Query: 126 caggttgacaaggaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaa 185
||||||||||||||||||||| ||||||| |||| ||||||||| || ||||||||||||
Sbjct: 294 caggttgacaaggaccagtaccagaaggttctcaagtacattgatatgggaaagcgcgaa 235
Query: 186 ggcgccacgctggtcaccggagggaagccctgcggcgacaataagggctactacatcgag 245
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 234 ggcgccacgctggtcaccggagggaagccctgcggcgac---aagggatactacatcgag 178
Query: 246 cccaccatcttcacggacgtcaagg 270
|| ||||||||||||||||||||||
Sbjct: 177 cctaccatcttcacggacgtcaagg 153
Score = 168 bits (85), Expect = 5e-040
Identities = 115/125 (92%)
Strand = Plus / Minus
Query: 6 gccggcacacgcatctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgcc 65
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 512 gccggcacacgcatctacgtgcaggaagggatctacgacgcgttcgtggagaaggccgcc 453
Query: 66 gagctcgccagcaagtccgtggtcggagacccgttcaacccgagtgtcagccaaggcccc 125
|||||||||| || || |||||||||||||||||||||||| |||||| ||||||||
Sbjct: 452 gagctcgccaagaaatcggtggtcggagacccgttcaacccgcgtgtcaatcaaggccct 393
Query: 126 caggt 130
|||||
Sbjct: 392 caggt 388
Score = 65.9 bits (33), Expect = 5e-009
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 268 aggacgacatgacgatcgcacaggatgaaatctttgggccggtgatggc 316
||||| ||||||||||||| || || |||||||||||||||||||||||
Sbjct: 49 aggacaacatgacgatcgcgcaagacgaaatctttgggccggtgatggc 1
>gb|CW260401.1|CW260401 104_727_11228947_116_35195_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228947, DNA
sequence
Length = 593
Score = 168 bits (85), Expect = 5e-040
Identities = 115/125 (92%)
Strand = Plus / Plus
Query: 6 gccggcacacgcatctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgcc 65
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 279 gccggcacacgcatctacgtgcaggaagggatctacgacgcgttcgtggagaaggccgcc 338
Query: 66 gagctcgccagcaagtccgtggtcggagacccgttcaacccgagtgtcagccaaggcccc 125
|||||||||| || || |||||||||||||||||||||||| |||||| ||||||||
Sbjct: 339 gagctcgccaagaaatcggtggtcggagacccgttcaacccgcgtgtcaatcaaggccct 398
Query: 126 caggt 130
|||||
Sbjct: 399 caggt 403
Score = 153 bits (77), Expect = 3e-035
Identities = 92/97 (94%)
Strand = Plus / Plus
Query: 126 caggttgacaaggaccagtacgagaaggtcctcaggtacattgacatcggaaagcgcgaa 185
||||||||||||||||||||| ||||||| |||| ||||||||| || ||||||||||||
Sbjct: 497 caggttgacaaggaccagtaccagaaggttctcaagtacattgatatgggaaagcgcgaa 556
Query: 186 ggcgccacgctggtcaccggagggaagccctgcggcg 222
|||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggcgccacgctggtcaccggagggaagccctgcggcg 593
>gb|CW297852.1|CW297852 104_780_11462261_116_35646_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462261, DNA
sequence
Length = 651
Score = 168 bits (85), Expect = 5e-040
Identities = 115/125 (92%)
Strand = Plus / Minus
Query: 6 gccggcacacgcatctacgtgcaggaagggatctacgacgagttcgtgaagaaggccgcc 65
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 198 gccggcacacgcatctacgtgcaggaagggatctacgacgcgttcgtggagaaggccgcc 139
Query: 66 gagctcgccagcaagtccgtggtcggagacccgttcaacccgagtgtcagccaaggcccc 125
|||||||||| || || |||||||||||||||||||||||| |||||| ||||||||
Sbjct: 138 gagctcgccaagaaatcggtggtcggagacccgttcaacccgcgtgtcaatcaaggccct 79
Query: 126 caggt 130
|||||
Sbjct: 78 caggt 74
>gb|BE362145.1|BE362145 DG1_84_D03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 703
Score = 163 bits (82), Expect = 3e-038
Identities = 278/341 (81%), Gaps = 3/341 (0%)
Strand = Plus / Plus
Query: 181 gcgaaggcgccacgctggtcaccggagggaagccctgcggcgacaataagggctactaca 240
||||||| ||||| ||| ||||||| || |||||| || |||||| |||| |||||||
Sbjct: 34 gcgaaggagccaccctgctcaccggcggcaagcccgccgccgacaa--aggg-tactaca 90
Query: 241 tcgagcccaccatcttcacggacgtcaaggacgacatgacgatcgcacaggatgaaatct 300
| |||||||||||||| || |||| ||| ||||||| |||||| ||||| || ||||
Sbjct: 91 ttgagcccaccatctttgtcgatgtcacggaggacatgaagatcgcgcaggaagagatct 150
Query: 301 ttgggccggtgatggctctcatgaaattcaagaccgtggaggaggtgatccagaaagcga 360
| || || || ||| | |||||||| |||| | | || || ||||||||| |||| || |
Sbjct: 151 tcggccccgtcatgtccctcatgaagttcaggtcggttgatgaggtgatcgagaaggcca 210
Query: 361 acaacacccggtacggcctggccgccggcatcgtgaccaagaacatcgacgtcgccaaca 420
|| |||| |||||| || |||||||||||||||||||||| | | ||| ||||||||
Sbjct: 211 actgcaccaagtacgggctcgccgccggcatcgtgaccaagagcctggacatcgccaacc 270
Query: 421 ccgtgtcgcggtccatccgcgccggcgccatctggatcaactgctacttcgcgttcgacc 480
||||||||||| | ||||||||| || | ||| | |||||||||| ||| |||||||
Sbjct: 271 gggtgtcgcggtcggtgcgcgccggcaccgtgtgggtgaactgctactacgccttcgacc 330
Query: 481 cggacgcgccgttcggcgggtacaagatgagcgggttcggc 521
|||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 331 cggacgcgcctttcggcgggtacaagatgagcggattcggc 371
>gb|CL177395.1|CL177395 104_384_10893805_116_31916_253 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893805, DNA
sequence
Length = 731
Score = 135 bits (68), Expect = 7e-030
Identities = 152/180 (84%)
Strand = Plus / Minus
Query: 342 gaggtgatccagaaagcgaacaacacccggtacggcctggccgccggcatcgtgaccaag 401
||||||||| |||| || ||| |||| |||||| || |||||||||||||||||||||
Sbjct: 390 gaggtgatcgagaaggccaactgcaccaagtacgggctcgccgccggcatcgtgaccaag 331
Query: 402 aacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccggcgccatctggatcaac 461
| | | ||| |||||||| ||||||||||| | ||||||||| || | ||| | |||
Sbjct: 330 agcctggacatcgccaaccgggtgtcgcggtcggtgcgcgccggcaccgtgtgggtgaac 271
Query: 462 tgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttcggc 521
||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 270 tgctactacgccttcgacccggacgcgcctttcggcgggtacaagatgagcggattcggc 211
>gb|CL177396.1|CL177396 104_384_10893805_148_31915_253 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893805, DNA
sequence
Length = 743
Score = 135 bits (68), Expect = 7e-030
Identities = 152/180 (84%)
Strand = Plus / Plus
Query: 342 gaggtgatccagaaagcgaacaacacccggtacggcctggccgccggcatcgtgaccaag 401
||||||||| |||| || ||| |||| |||||| || |||||||||||||||||||||
Sbjct: 470 gaggtgatcgagaaggccaactgcaccaagtacgggctcgccgccggcatcgtgaccaag 529
Query: 402 aacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccggcgccatctggatcaac 461
| | | ||| |||||||| ||||||||||| | ||||||||| || | ||| | |||
Sbjct: 530 agcctggacatcgccaaccgggtgtcgcggtcggtgcgcgccggcaccgtgtgggtgaac 589
Query: 462 tgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttcggc 521
||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 590 tgctactacgccttcgacccggacgcgcctttcggcgggtacaagatgagcggattcggc 649
Score = 42.1 bits (21), Expect = 0.077
Identities = 64/76 (84%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 181 gcgaaggcgccacgctggtcaccggagggaagccctgcggcgacaataagggctactaca 240
||||||| ||||| ||| ||||||| || |||||| || |||||| |||| |||||||
Sbjct: 76 gcgaaggagccaccctgctcaccggcggcaagcccgccgccgacaa--aggg-tactaca 132
Query: 241 tcgagcccaccatctt 256
| ||||||||||||||
Sbjct: 133 ttgagcccaccatctt 148
>gb|CW137973.1|CW137973 104_525_11119958_148_34875_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11119958, DNA
sequence
Length = 593
Score = 135 bits (68), Expect = 7e-030
Identities = 152/180 (84%)
Strand = Plus / Minus
Query: 342 gaggtgatccagaaagcgaacaacacccggtacggcctggccgccggcatcgtgaccaag 401
||||||||| |||| || ||| |||| |||||| || |||||||||||||||||||||
Sbjct: 567 gaggtgatcgagaaggccaactgcaccaagtacgggctcgccgccggcatcgtgaccaag 508
Query: 402 aacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccggcgccatctggatcaac 461
| | | ||| |||||||| ||||||||||| | ||||||||| || | ||| | |||
Sbjct: 507 agcctggacatcgccaaccgggtgtcgcggtcggtgcgcgccggcaccgtgtgggtgaac 448
Query: 462 tgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttcggc 521
||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 447 tgctactacgccttcgacccggacgcgcctttcggcgggtacaagatgagcggattcggc 388
>gb|CW276375.1|CW276375 104_750_11405455_116_35396_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405455, DNA
sequence
Length = 691
Score = 135 bits (68), Expect = 7e-030
Identities = 152/180 (84%)
Strand = Plus / Plus
Query: 342 gaggtgatccagaaagcgaacaacacccggtacggcctggccgccggcatcgtgaccaag 401
||||||||| |||| || ||| |||| |||||| || |||||||||||||||||||||
Sbjct: 254 gaggtgatcgagaaggccaactgcaccaagtacgggctcgccgccggcatcgtgaccaag 313
Query: 402 aacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccggcgccatctggatcaac 461
| | | ||| |||||||| ||||||||||| | ||||||||| || | ||| | |||
Sbjct: 314 agcctggacatcgccaaccgggtgtcgcggtcggtgcgcgccggcaccgtgtgggtgaac 373
Query: 462 tgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttcggc 521
||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 374 tgctactacgccttcgacccggacgcgcctttcggcgggtacaagatgagcggattcggc 433
>gb|CW282858.1|CW282858 104_759_11408938_148_35474_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408938, DNA
sequence
Length = 718
Score = 135 bits (68), Expect = 7e-030
Identities = 152/180 (84%)
Strand = Plus / Plus
Query: 342 gaggtgatccagaaagcgaacaacacccggtacggcctggccgccggcatcgtgaccaag 401
||||||||| |||| || ||| |||| |||||| || |||||||||||||||||||||
Sbjct: 281 gaggtgatcgagaaggccaactgcaccaagtacgggctcgccgccggcatcgtgaccaag 340
Query: 402 aacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccggcgccatctggatcaac 461
| | | ||| |||||||| ||||||||||| | ||||||||| || | ||| | |||
Sbjct: 341 agcctggacatcgccaaccgggtgtcgcggtcggtgcgcgccggcaccgtgtgggtgaac 400
Query: 462 tgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttcggc 521
||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 401 tgctactacgccttcgacccggacgcgcctttcggcgggtacaagatgagcggattcggc 460
>gb|CW380051.1|CW380051 fsbb001f059k11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f059k11, DNA
sequence
Length = 723
Score = 135 bits (68), Expect = 7e-030
Identities = 152/180 (84%)
Strand = Plus / Minus
Query: 342 gaggtgatccagaaagcgaacaacacccggtacggcctggccgccggcatcgtgaccaag 401
||||||||| |||| || ||| |||| |||||| || |||||||||||||||||||||
Sbjct: 715 gaggtgatcgagaaggccaactgcaccaagtacgggctcgccgccggcatcgtgaccaag 656
Query: 402 aacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccggcgccatctggatcaac 461
| | | ||| |||||||| ||||||||||| | ||||||||| || | ||| | |||
Sbjct: 655 agcctggacatcgccaaccgggtgtcgcggtcggtgcgcgccggcaccgtgtgggtgaac 596
Query: 462 tgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttcggc 521
||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 595 tgctactacgccttcgacccggacgcgcctttcggcgggtacaagatgagcggattcggc 536
>gb|CW405552.1|CW405552 fsbb001f098c18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f098c18, DNA
sequence
Length = 759
Score = 135 bits (68), Expect = 7e-030
Identities = 152/180 (84%)
Strand = Plus / Plus
Query: 342 gaggtgatccagaaagcgaacaacacccggtacggcctggccgccggcatcgtgaccaag 401
||||||||| |||| || ||| |||| |||||| || |||||||||||||||||||||
Sbjct: 113 gaggtgatcgagaaggccaactgcaccaagtacgggctcgccgccggcatcgtgaccaag 172
Query: 402 aacatcgacgtcgccaacaccgtgtcgcggtccatccgcgccggcgccatctggatcaac 461
| | | ||| |||||||| ||||||||||| | ||||||||| || | ||| | |||
Sbjct: 173 agcctggacatcgccaaccgggtgtcgcggtcggtgcgcgccggcaccgtgtgggtgaac 232
Query: 462 tgctacttcgcgttcgacccggacgcgccgttcggcgggtacaagatgagcgggttcggc 521
||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 233 tgctactacgccttcgacccggacgcgcctttcggcgggtacaagatgagcggattcggc 292
>gb|AW282973.2|AW282973 LG1_206_D06.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 107
Score = 107 bits (54), Expect = 2e-021
Identities = 93/106 (87%)
Strand = Plus / Plus
Query: 475 tcgacccggacgcgccgttcggcgggtacaagatgagcgggttcggcaaggacatgggca 534
||||||| ||||| || ||||| |||||||| |||||||| || ||||||||||||||||
Sbjct: 1 tcgaccccgacgccccattcggggggtacaaaatgagcggatttggcaaggacatgggca 60
Query: 535 tggacgcgctcgacaagtacctgcagaccaagaccgtggtcactcc 580
||||| | || || |||||| ||||||||||| |||||||||||||
Sbjct: 61 tggaccccctggaaaagtacttgcagaccaagcccgtggtcactcc 106
>gb|CW430773.1|CW430773 fsbb001f144k09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f144k09, DNA
sequence
Length = 690
Score = 79.8 bits (40), Expect = 4e-013
Identities = 127/155 (81%), Gaps = 1/155 (0%)
Strand = Plus / Plus
Query: 342 gaggtgatccagaaagcgaacaacacccggtacggcctggccgccggcatcgtgaccaag 401
||||||||| |||| || ||| |||| |||||| || |||||||||||||||||||||
Sbjct: 536 gaggtgatcgagaaggccaactgcaccaagtacgggctcgccgccggcatcgtgaccaag 595
Query: 402 aacatcgacgtcgccaacaccg-tgtcgcggtccatccgcgccggcgccatctggatcaa 460
| | | ||| |||||||| | |||||||||| | ||||||||| || | ||| | ||
Sbjct: 596 agcctggacatcgccaaccngggtgtcgcggtcggtgcgcgccggcaccgtgtgggtgaa 655
Query: 461 ctgctacttcgcgttcgacccggacgcgccgttcg 495
|||||||| ||| ||||||||||||||||| ||||
Sbjct: 656 ctgctactacgccttcgacccggacgcgcctttcg 690
Score = 42.1 bits (21), Expect = 0.077
Identities = 64/76 (84%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 181 gcgaaggcgccacgctggtcaccggagggaagccctgcggcgacaataagggctactaca 240
||||||| ||||| ||| ||||||| || |||||| || |||||| |||| |||||||
Sbjct: 142 gcgaaggagccaccctgctcaccggcggcaagcccgccgccgacaa--aggg-tactaca 198
Query: 241 tcgagcccaccatctt 256
| ||||||||||||||
Sbjct: 199 ttgagcccaccatctt 214
>gb|CW090470.1|CW090470 104_436_10949298_114_32605_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10949298, DNA
sequence
Length = 762
Score = 77.8 bits (39), Expect = 1e-012
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 503 caagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaagtacctg 557
||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 361 caagatgagcgggttcggcaaggacgaaggcatgcacgcgctcgacaagtacctg 415
>gb|CN131929.1|CN131929 OX1_3_C10.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_3_C10_A002 3', mRNA sequence
Length = 572
Score = 77.8 bits (39), Expect = 1e-012
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 503 caagatgagcgggttcggcaaggacatgggcatggacgcgctcgacaagtacctg 557
||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 186 caagatgagcgggttcggcaaggacgaaggcatgcacgcgctcgacaagtacctg 240
>gb|CL153272.1|CL153272 104_337_10780603_114_31367_235 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780603, DNA
sequence
Length = 656
Score = 69.9 bits (35), Expect = 3e-010
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 21 tacgtgcaggaagggatctacgacgagttcgtgaagaaggccg 63
|||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 185 tacgtgcaggaagggatctatgacgagttcgtcaagaaggccg 227
Score = 42.1 bits (21), Expect = 0.077
Identities = 64/76 (84%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 181 gcgaaggcgccacgctggtcaccggagggaagccctgcggcgacaataagggctactaca 240
||||||| ||||| ||| ||||||| || |||||| || |||||| |||| |||||||
Sbjct: 461 gcgaaggagccaccctgctcaccggcggcaagcccgccgccgacaa--aggg-tactaca 517
Query: 241 tcgagcccaccatctt 256
| ||||||||||||||
Sbjct: 518 ttgagcccaccatctt 533
>gb|CL193103.1|CL193103 104_416_10940701_114_32265_055 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10940701, DNA
sequence
Length = 666
Score = 69.9 bits (35), Expect = 3e-010
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 21 tacgtgcaggaagggatctacgacgagttcgtgaagaaggccg 63
|||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 195 tacgtgcaggaagggatctatgacgagttcgtcaagaaggccg 237
Score = 42.1 bits (21), Expect = 0.077
Identities = 64/76 (84%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 181 gcgaaggcgccacgctggtcaccggagggaagccctgcggcgacaataagggctactaca 240
||||||| ||||| ||| ||||||| || |||||| || |||||| |||| |||||||
Sbjct: 471 gcgaaggagccaccctgctcaccggcggcaagcccgccgccgacaa--aggg-tactaca 527
Query: 241 tcgagcccaccatctt 256
| ||||||||||||||
Sbjct: 528 ttgagcccaccatctt 543
>gb|CW080946.1|CW080946 104_416_10940701_114_32341_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10940701, DNA
sequence
Length = 653
Score = 69.9 bits (35), Expect = 3e-010
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 21 tacgtgcaggaagggatctacgacgagttcgtgaagaaggccg 63
|||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 182 tacgtgcaggaagggatctatgacgagttcgtcaagaaggccg 224
Score = 42.1 bits (21), Expect = 0.077
Identities = 64/76 (84%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 181 gcgaaggcgccacgctggtcaccggagggaagccctgcggcgacaataagggctactaca 240
||||||| ||||| ||| ||||||| || |||||| || |||||| |||| |||||||
Sbjct: 458 gcgaaggagccaccctgctcaccggcggcaagcccgccgccgacaa--aggg-tactaca 514
Query: 241 tcgagcccaccatctt 256
| ||||||||||||||
Sbjct: 515 ttgagcccaccatctt 530
>gb|CW082416.1|CW082416 104_424_10943692_116_32340_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943692, DNA
sequence
Length = 612
Score = 69.9 bits (35), Expect = 3e-010
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 21 tacgtgcaggaagggatctacgacgagttcgtgaagaaggccg 63
|||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 246 tacgtgcaggaagggatctatgacgagttcgtcaagaaggccg 204
>gb|CW206798.1|CW206798 104_635_11187780_116_36962_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187780, DNA
sequence
Length = 696
Score = 69.9 bits (35), Expect = 3e-010
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 21 tacgtgcaggaagggatctacgacgagttcgtgaagaaggccg 63
|||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 502 tacgtgcaggaagggatctatgacgagttcgtcaagaaggccg 460
Score = 42.1 bits (21), Expect = 0.077
Identities = 64/76 (84%), Gaps = 3/76 (3%)
Strand = Plus / Minus
Query: 181 gcgaaggcgccacgctggtcaccggagggaagccctgcggcgacaataagggctactaca 240
||||||| ||||| ||| ||||||| || |||||| || |||||| |||| |||||||
Sbjct: 226 gcgaaggagccaccctgctcaccggcggcaagcccgccgccgacaa--aggg-tactaca 170
Query: 241 tcgagcccaccatctt 256
| ||||||||||||||
Sbjct: 169 ttgagcccaccatctt 154
>gb|CW206799.1|CW206799 104_635_11187780_148_36966_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187780, DNA
sequence
Length = 626
Score = 69.9 bits (35), Expect = 3e-010
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 21 tacgtgcaggaagggatctacgacgagttcgtgaagaaggccg 63
|||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 399 tacgtgcaggaagggatctatgacgagttcgtcaagaaggccg 441
>gb|CW252058.1|CW252058 104_715_11224285_116_35094_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224285, DNA
sequence
Length = 708
Score = 69.9 bits (35), Expect = 3e-010
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 21 tacgtgcaggaagggatctacgacgagttcgtgaagaaggccg 63
|||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 113 tacgtgcaggaagggatctatgacgagttcgtcaagaaggccg 71
>gb|CW380050.1|CW380050 fsbb001f059k11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f059k11, DNA
sequence
Length = 742
Score = 69.9 bits (35), Expect = 3e-010
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 21 tacgtgcaggaagggatctacgacgagttcgtgaagaaggccg 63
|||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 124 tacgtgcaggaagggatctatgacgagttcgtcaagaaggccg 166
Score = 42.1 bits (21), Expect = 0.077
Identities = 64/76 (84%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 181 gcgaaggcgccacgctggtcaccggagggaagccctgcggcgacaataagggctactaca 240
||||||| ||||| ||| ||||||| || |||||| || |||||| |||| |||||||
Sbjct: 400 gcgaaggagccaccctgctcaccggcggcaagcccgccgccgacaa--aggg-tactaca 456
Query: 241 tcgagcccaccatctt 256
| ||||||||||||||
Sbjct: 457 ttgagcccaccatctt 472
>gb|BE125881.1|BE125881 DG1_59_B06.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 497
Score = 69.9 bits (35), Expect = 3e-010
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 21 tacgtgcaggaagggatctacgacgagttcgtgaagaaggccg 63
|||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 390 tacgtgcaggaagggatctatgacgagttcgtcaagaaggccg 432
>gb|AW923753.1|AW923753 DG1_59_B06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 378
Score = 50.1 bits (25), Expect = 3e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 493 tcggcgggtacaagatgagcgggttcggc 521
|||||||||||||||||||||| ||||||
Sbjct: 1 tcggcgggtacaagatgagcggattcggc 29
>gb|BZ368348.1|BZ368348 id12g11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone id12g11 5', DNA sequence
Length = 374
Score = 44.1 bits (22), Expect = 0.020
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 489 ccgttcggcgggtacaagatgagcgg 514
||||||||||| ||||||||||||||
Sbjct: 213 ccgttcggcggctacaagatgagcgg 238
>gb|CW317755.1|CW317755 104_809_11473583_116_35861_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473583, DNA
sequence
Length = 703
Score = 44.1 bits (22), Expect = 0.020
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 489 ccgttcggcgggtacaagatgagcgg 514
||||||||||| ||||||||||||||
Sbjct: 389 ccgttcggcggctacaagatgagcgg 414
>gb|CW317757.1|CW317757 104_809_11473584_116_35862_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473584, DNA
sequence
Length = 688
Score = 44.1 bits (22), Expect = 0.020
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 489 ccgttcggcgggtacaagatgagcgg 514
||||||||||| ||||||||||||||
Sbjct: 389 ccgttcggcggctacaagatgagcgg 414
>gb|CW424062.1|CW424062 fsbb001f134d10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f134d10, DNA
sequence
Length = 611
Score = 44.1 bits (22), Expect = 0.020
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 489 ccgttcggcgggtacaagatgagcgg 514
||||||||||| ||||||||||||||
Sbjct: 202 ccgttcggcggctacaagatgagcgg 177
>gb|AW565878.1|AW565878 LG1_352_H12.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 612
Score = 44.1 bits (22), Expect = 0.020
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 228 aagggctactacatcgagcccaccatcttc 257
||||| |||| |||||||||||||||||||
Sbjct: 130 aagggttacttcatcgagcccaccatcttc 159
>gb|AW681193.1|AW681193 WS1_9_D05.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 547
Score = 44.1 bits (22), Expect = 0.020
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 489 ccgttcggcgggtacaagatgagcgg 514
||||||||||| ||||||||||||||
Sbjct: 364 ccgttcggcggctacaagatgagcgg 389
>gb|AW922462.1|AW922462 DG1_19_G06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 568
Score = 44.1 bits (22), Expect = 0.020
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 489 ccgttcggcgggtacaagatgagcgg 514
||||||||||| ||||||||||||||
Sbjct: 395 ccgttcggcggctacaagatgagcgg 420
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 217,987
Number of Sequences: 832831
Number of extensions: 217987
Number of successful extensions: 61356
Number of sequences better than 0.5: 73
Number of HSP's better than 0.5 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61137
Number of HSP's gapped (non-prelim): 201
length of query: 800
length of database: 491,359,669
effective HSP length: 20
effective length of query: 780
effective length of database: 474,703,049
effective search space: 370268378220
effective search space used: 370268378220
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)