BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192481.2.2
(1053 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM325815.1|BM325815 PIC1_53_B04.b1_A002 Pathogen-infecte... 78 2e-012
gb|CW120079.1|CW120079 104_497_11109121_116_34640_009 Sorgh... 62 1e-007
gb|CW120080.1|CW120080 104_497_11109121_148_34644_009 Sorgh... 62 1e-007
gb|CW393658.1|CW393658 fsbb001f080n03k0 Sorghum methylation... 58 2e-006
gb|CW393013.1|CW393013 fsbb001f079o06k0 Sorghum methylation... 50 4e-004
gb|CW299230.1|CW299230 104_782_11463002_148_35687_013 Sorgh... 46 0.007
gb|CL149764.1|CL149764 104_330_10778044_116_31354_364 Sorgh... 44 0.026
gb|CW026385.1|CW026385 104_252_10497917_114_30510 Sorghum m... 44 0.026
gb|CW026426.1|CW026426 104_252_10497941_114_30512 Sorghum m... 44 0.026
gb|CW057610.1|CW057610 104_299_10518313_115_30171 Sorghum m... 44 0.026
gb|CW104509.1|CW104509 104_473_11012470_116_34443_085 Sorgh... 44 0.026
gb|CW108003.1|CW108003 104_478_11096907_148_34483_008 Sorgh... 44 0.026
gb|CW119946.1|CW119946 104_497_11109048_148_34645_094 Sorgh... 44 0.026
gb|CW151482.1|CW151482 104_552_11143964_116_36322_076 Sorgh... 44 0.026
gb|CW241471.1|CW241471 104_700_11218789_148_37542_053 Sorgh... 44 0.026
gb|CW245216.1|CW245216 104_706_11220933_148_35074_091 Sorgh... 44 0.026
gb|CW245217.1|CW245217 104_706_11220933_148_37594_091 Sorgh... 44 0.026
gb|CW251627.1|CW251627 104_714_11224038_148_35071_025 Sorgh... 44 0.026
gb|CW263308.1|CW263308 104_731_11230617_148_35215_039 Sorgh... 44 0.026
gb|CW460583.1|CW460583 fsbb001f207n14f0 Sorghum methylation... 44 0.026
gb|CW460584.1|CW460584 fsbb001f207n14k0 Sorghum methylation... 44 0.026
gb|AW677812.1|AW677812 WS1_11_B03.b1_A002 Water-stressed 1 ... 44 0.026
gb|AW746778.1|AW746778 WS1_55_B07.b1_A002 Water-stressed 1 ... 44 0.026
gb|BG464078.1|BG464078 EM1_69_D03.b1_A002 Embryo 1 (EM1) So... 44 0.026
gb|BG557515.1|BG557515 EM1_54_B11.b1_A002 Embryo 1 (EM1) So... 44 0.026
gb|BG649145.1|BG649145 EM1_56_E09.b1_A002 Embryo 1 (EM1) So... 44 0.026
gb|BM330523.1|BM330523 PIC1_53_B04.g1_A002 Pathogen-infecte... 44 0.026
gb|CF481237.1|CF481237 POL1_70_F10.g1_A002 Pollen Sorghum b... 44 0.026
gb|CF486637.1|CF486637 POL1_38_H02.g1_A002 Pollen Sorghum b... 44 0.026
gb|CF489120.1|CF489120 POL1_54_C11.g1_A002 Pollen Sorghum b... 44 0.026
gb|CN130294.1|CN130294 RHOH1_40_B11.g1_A002 Acid- and alkal... 44 0.026
gb|CN133371.1|CN133371 OX1_11_G05.g1_A002 Oxidatively-stres... 44 0.026
gb|CN133376.1|CN133376 OX1_11_G10.g1_A002 Oxidatively-stres... 44 0.026
gb|CN143319.1|CN143319 WOUND1_15_B10.g1_A002 Wounded leaves... 44 0.026
gb|AF114171.1| Sorghum bicolor BAC clone 25.M18, complete s... 44 0.026
gb|CL196350.1|CL196350 104_422_10943001_116_32320_039 Sorgh... 42 0.10
gb|CW029106.1|CW029106 104_256_10499487_116_30400 Sorghum m... 42 0.10
gb|CW048832.1|CW048832 104_287_10513656_114_30211 Sorghum m... 42 0.10
gb|CW157501.1|CW157501 104_560_11147267_116_36383_034 Sorgh... 42 0.10
gb|CW216619.1|CW216619 104_649_11195213_116_37125_023 Sorgh... 42 0.10
gb|CW371734.1|CW371734 fsbb001f047f12f0 Sorghum methylation... 42 0.10
gb|CF485646.1|CF485646 POL1_32_F06.g1_A002 Pollen Sorghum b... 42 0.10
gb|CL167787.1|CL167787 104_365_10810332_116_31805_012 Sorgh... 40 0.40
gb|CW037421.1|CW037421 104_269_10504332_114_30383 Sorghum m... 40 0.40
gb|CW267416.1|CW267416 104_737_11400723_116_35289_004 Sorgh... 40 0.40
gb|CW271366.1|CW271366 104_743_11402961_148_35344_039 Sorgh... 40 0.40
gb|CW271525.1|CW271525 104_743_11403043_148_35342_068 Sorgh... 40 0.40
gb|CW308324.1|CW308324 104_796_11468606_116_35731_051 Sorgh... 40 0.40
gb|CW366472.1|CW366472 fsbb001f039h22f0 Sorghum methylation... 40 0.40
gb|CW384247.1|CW384247 fsbb001f067d04k0 Sorghum methylation... 40 0.40
gb|CW396466.1|CW396466 fsbb001f084o17f0 Sorghum methylation... 40 0.40
gb|CW397246.1|CW397246 fsbb001f086b07k0 Sorghum methylation... 40 0.40
gb|CW404749.1|CW404749 fsbb001f097a13f0 Sorghum methylation... 40 0.40
gb|CW417150.1|CW417150 fsbb001f120a08f0 Sorghum methylation... 40 0.40
gb|CW432939.1|CW432939 fsbb001f147o23f0 Sorghum methylation... 40 0.40
gb|BE356092.1|BE356092 DG1_122_B04.b1_A002 Dark Grown 1 (DG... 40 0.40
gb|BF586225.1|BF586225 FM1_27_C08.b1_A003 Floral-Induced Me... 40 0.40
gb|BF657494.1|BF657494 OV2_24_H02.b1_A002 Ovary 2 (OV2) Sor... 40 0.40
gb|BF657529.1|BF657529 OV2_23_D03.b1_A002 Ovary 2 (OV2) Sor... 40 0.40
gb|BG158408.1|BG158408 FM1_60_B06.b1_A003 Floral-Induced Me... 40 0.40
gb|BG558427.1|BG558427 RHIZ2_67_D04.b1_A003 Rhizome2 (RHIZ2... 40 0.40
gb|CB928100.1|CB928100 ABA1_36_C05.g1_A012 Abscisic acid-tr... 40 0.40
>gb|BM325815.1|BM325815 PIC1_53_B04.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 474
Score = 77.8 bits (39), Expect = 2e-012
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 757 ggcgcctcgtacccgaagacgtcggaggcgaggacgacggcgcggct 803
||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 264 ggcgcctcgaacccgaagacgtcggaggcgagaacgacggcgcggct 218
Score = 54.0 bits (27), Expect = 3e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 577 ccttccttcttcaaagcggcgaacagtggcttagcgtcttccgcagctttcaccggagag 636
||||||||||||||||| || || |||||||| | ||||| |||||||| ||||| |||
Sbjct: 444 ccttccttcttcaaagcagcaaagagtggcttggtgtctttggcagcttttaccggggag 385
Query: 637 tga 639
|||
Sbjct: 384 tga 382
>gb|CW120079.1|CW120079 104_497_11109121_116_34640_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109121, DNA
sequence
Length = 632
Score = 61.9 bits (31), Expect = 1e-007
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 769 ccgaagacgtcggaggcgaggacgacggcgcggct 803
|||||||||||||||||||| ||||||||||||||
Sbjct: 256 ccgaagacgtcggaggcgagaacgacggcgcggct 222
>gb|CW120080.1|CW120080 104_497_11109121_148_34644_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109121, DNA
sequence
Length = 730
Score = 61.9 bits (31), Expect = 1e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 769 ccgaagacgtcggaggcgaggacgacggcgcggct 803
|||||||||||||||||||| ||||||||||||||
Sbjct: 552 ccgaagacgtcggaggcgagaacgacggcgcggct 586
>gb|CW393658.1|CW393658 fsbb001f080n03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f080n03, DNA
sequence
Length = 717
Score = 58.0 bits (29), Expect = 2e-006
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 773 agacgtcggaggcgaggacgacggcgcggctcgagct 809
|||||||||||||||||||||||||||| || |||||
Sbjct: 160 agacgtcggaggcgaggacgacggcgcgtctggagct 124
>gb|CW393013.1|CW393013 fsbb001f079o06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f079o06, DNA
sequence
Length = 575
Score = 50.1 bits (25), Expect = 4e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 777 gtcggaggcgaggacgacggcgcggctcgagct 809
|||||||||||||||||||||||| || |||||
Sbjct: 440 gtcggaggcgaggacgacggcgcgtctggagct 408
>gb|CW299230.1|CW299230 104_782_11463002_148_35687_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463002, DNA
sequence
Length = 648
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 938 gcggtggtggccgccgccgccgcgagc 964
|||| ||||||||||||||||||||||
Sbjct: 379 gcggaggtggccgccgccgccgcgagc 405
>gb|CL149764.1|CL149764 104_330_10778044_116_31354_364 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778044, DNA
sequence
Length = 705
Score = 44.1 bits (22), Expect = 0.026
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 942 tggtggccgccgccgccgcgagcacg 967
|||||||||||||||||||| |||||
Sbjct: 217 tggtggccgccgccgccgcgggcacg 242
>gb|CW026385.1|CW026385 104_252_10497917_114_30510 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10497917, DNA
sequence
Length = 727
Score = 44.1 bits (22), Expect = 0.026
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 939 cggtggtggccgccgccgccgc 960
||||||||||||||||||||||
Sbjct: 304 cggtggtggccgccgccgccgc 325
>gb|CW026426.1|CW026426 104_252_10497941_114_30512 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10497941, DNA
sequence
Length = 615
Score = 44.1 bits (22), Expect = 0.026
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 939 cggtggtggccgccgccgccgc 960
||||||||||||||||||||||
Sbjct: 304 cggtggtggccgccgccgccgc 325
>gb|CW057610.1|CW057610 104_299_10518313_115_30171 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518313, DNA
sequence
Length = 585
Score = 44.1 bits (22), Expect = 0.026
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 942 tggtggccgccgccgccgcgagcacg 967
|||||||||||||||||||| |||||
Sbjct: 560 tggtggccgccgccgccgcgggcacg 585
>gb|CW104509.1|CW104509 104_473_11012470_116_34443_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11012470, DNA
sequence
Length = 619
Score = 44.1 bits (22), Expect = 0.026
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 939 cggtggtggccgccgccgccgc 960
||||||||||||||||||||||
Sbjct: 229 cggtggtggccgccgccgccgc 250
>gb|CW108003.1|CW108003 104_478_11096907_148_34483_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096907, DNA
sequence
Length = 263
Score = 44.1 bits (22), Expect = 0.026
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 939 cggtggtggccgccgccgccgc 960
||||||||||||||||||||||
Sbjct: 170 cggtggtggccgccgccgccgc 191
>gb|CW119946.1|CW119946 104_497_11109048_148_34645_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109048, DNA
sequence
Length = 535
Score = 44.1 bits (22), Expect = 0.026
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 942 tggtggccgccgccgccgcgagcacg 967
|||||||||||||||||||| |||||
Sbjct: 244 tggtggccgccgccgccgcgggcacg 269
>gb|CW151482.1|CW151482 104_552_11143964_116_36322_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11143964, DNA
sequence
Length = 698
Score = 44.1 bits (22), Expect = 0.026
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 769 ccgaagacgtcggaggcgaggacgacggcg 798
||||||||||||| | ||||||||||||||
Sbjct: 657 ccgaagacgtcggcgacgaggacgacggcg 686
>gb|CW241471.1|CW241471 104_700_11218789_148_37542_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218789, DNA
sequence
Length = 582
Score = 44.1 bits (22), Expect = 0.026
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 939 cggtggtggccgccgccgccgc 960
||||||||||||||||||||||
Sbjct: 434 cggtggtggccgccgccgccgc 413
>gb|CW245216.1|CW245216 104_706_11220933_148_35074_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220933, DNA
sequence
Length = 650
Score = 44.1 bits (22), Expect = 0.026
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 769 ccgaagacgtcggaggcgaggacgacggcg 798
||||||||||||| | ||||||||||||||
Sbjct: 250 ccgaagacgtcggcgacgaggacgacggcg 279
>gb|CW245217.1|CW245217 104_706_11220933_148_37594_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220933, DNA
sequence
Length = 648
Score = 44.1 bits (22), Expect = 0.026
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 769 ccgaagacgtcggaggcgaggacgacggcg 798
||||||||||||| | ||||||||||||||
Sbjct: 250 ccgaagacgtcggcgacgaggacgacggcg 279
>gb|CW251627.1|CW251627 104_714_11224038_148_35071_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224038, DNA
sequence
Length = 654
Score = 44.1 bits (22), Expect = 0.026
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 942 tggtggccgccgccgccgcgagcacg 967
|||||||||||||||||||| |||||
Sbjct: 176 tggtggccgccgccgccgcgggcacg 201
>gb|CW263308.1|CW263308 104_731_11230617_148_35215_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11230617, DNA
sequence
Length = 718
Score = 44.1 bits (22), Expect = 0.026
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 769 ccgaagacgtcggaggcgaggacgacggcg 798
||||||||||||| | ||||||||||||||
Sbjct: 83 ccgaagacgtcggcgacgaggacgacggcg 54
>gb|CW460583.1|CW460583 fsbb001f207n14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f207n14, DNA
sequence
Length = 688
Score = 44.1 bits (22), Expect = 0.026
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 939 cggtggtggccgccgccgccgc 960
||||||||||||||||||||||
Sbjct: 612 cggtggtggccgccgccgccgc 591
>gb|CW460584.1|CW460584 fsbb001f207n14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f207n14, DNA
sequence
Length = 695
Score = 44.1 bits (22), Expect = 0.026
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 939 cggtggtggccgccgccgccgc 960
||||||||||||||||||||||
Sbjct: 590 cggtggtggccgccgccgccgc 611
>gb|AW677812.1|AW677812 WS1_11_B03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 542
Score = 44.1 bits (22), Expect = 0.026
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 769 ccgaagacgtcggaggcgaggacgacggcg 798
||||||||||||| | ||||||||||||||
Sbjct: 237 ccgaagacgtcggcgacgaggacgacggcg 208
>gb|AW746778.1|AW746778 WS1_55_B07.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 477
Score = 44.1 bits (22), Expect = 0.026
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 769 ccgaagacgtcggaggcgaggacgacggcg 798
||||||||||||| | ||||||||||||||
Sbjct: 290 ccgaagacgtcggcgacgaggacgacggcg 261
>gb|BG464078.1|BG464078 EM1_69_D03.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 458
Score = 44.1 bits (22), Expect = 0.026
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 769 ccgaagacgtcggaggcgaggacgacggcg 798
||||||||||||| | ||||||||||||||
Sbjct: 272 ccgaagacgtcggcgacgaggacgacggcg 243
>gb|BG557515.1|BG557515 EM1_54_B11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 436
Score = 44.1 bits (22), Expect = 0.026
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 769 ccgaagacgtcggaggcgaggacgacggcg 798
||||||||||||| | ||||||||||||||
Sbjct: 272 ccgaagacgtcggcgacgaggacgacggcg 243
>gb|BG649145.1|BG649145 EM1_56_E09.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 353
Score = 44.1 bits (22), Expect = 0.026
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 942 tggtggccgccgccgccgcgagcacg 967
|||||||||||||||||||| |||||
Sbjct: 18 tggtggccgccgccgccgcgggcacg 43
>gb|BM330523.1|BM330523 PIC1_53_B04.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 543
Score = 44.1 bits (22), Expect = 0.026
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 577 ccttccttcttcaaagcggcgaacagtggcttagcgtcttccgcagcttt 626
||||||||||||||||| || || |||||||| | ||||| ||||||||
Sbjct: 51 ccttccttcttcaaagcagcaaagagtggcttggtgtctttggcagcttt 2
>gb|CF481237.1|CF481237 POL1_70_F10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_70_F10_A002 5', mRNA sequence
Length = 667
Score = 44.1 bits (22), Expect = 0.026
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 769 ccgaagacgtcggaggcgaggacgacggcg 798
||||||||||||| | ||||||||||||||
Sbjct: 482 ccgaagacgtcggcgacgaggacgacggcg 453
>gb|CF486637.1|CF486637 POL1_38_H02.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_H02_A002 5', mRNA sequence
Length = 615
Score = 44.1 bits (22), Expect = 0.026
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 769 ccgaagacgtcggaggcgaggacgacggcg 798
||||||||||||| | ||||||||||||||
Sbjct: 471 ccgaagacgtcggcgacgaggacgacggcg 442
>gb|CF489120.1|CF489120 POL1_54_C11.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_54_C11_A002 5', mRNA sequence
Length = 592
Score = 44.1 bits (22), Expect = 0.026
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 769 ccgaagacgtcggaggcgaggacgacggcg 798
||||||||||||| | ||||||||||||||
Sbjct: 447 ccgaagacgtcggcgacgaggacgacggcg 418
>gb|CN130294.1|CN130294 RHOH1_40_B11.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_40_B11_A002 5', mRNA sequence
Length = 635
Score = 44.1 bits (22), Expect = 0.026
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 769 ccgaagacgtcggaggcgaggacgacggcg 798
||||||||||||| | ||||||||||||||
Sbjct: 419 ccgaagacgtcggcgacgaggacgacggcg 390
>gb|CN133371.1|CN133371 OX1_11_G05.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_11_G05_A002 5', mRNA sequence
Length = 725
Score = 44.1 bits (22), Expect = 0.026
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 769 ccgaagacgtcggaggcgaggacgacggcg 798
||||||||||||| | ||||||||||||||
Sbjct: 472 ccgaagacgtcggcgacgaggacgacggcg 443
>gb|CN133376.1|CN133376 OX1_11_G10.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_11_G10_A002 5', mRNA sequence
Length = 714
Score = 44.1 bits (22), Expect = 0.026
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 769 ccgaagacgtcggaggcgaggacgacggcg 798
||||||||||||| | ||||||||||||||
Sbjct: 227 ccgaagacgtcggcgacgaggacgacggcg 198
>gb|CN143319.1|CN143319 WOUND1_15_B10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_15_B10_A002 5', mRNA sequence
Length = 700
Score = 44.1 bits (22), Expect = 0.026
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 769 ccgaagacgtcggaggcgaggacgacggcg 798
||||||||||||| | ||||||||||||||
Sbjct: 248 ccgaagacgtcggcgacgaggacgacggcg 219
>gb|AF114171.1| Sorghum bicolor BAC clone 25.M18, complete sequence
Length = 183990
Score = 44.1 bits (22), Expect = 0.026
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 939 cggtggtggccgccgccgccgc 960
||||||||||||||||||||||
Sbjct: 38767 cggtggtggccgccgccgccgc 38746
>gb|CL196350.1|CL196350 104_422_10943001_116_32320_039 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943001, DNA
sequence
Length = 589
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 940 ggtggtggccgccgccgccgc 960
|||||||||||||||||||||
Sbjct: 43 ggtggtggccgccgccgccgc 63
>gb|CW029106.1|CW029106 104_256_10499487_116_30400 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499487, DNA
sequence
Length = 715
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 939 cggtggtggccgccgccgccg 959
|||||||||||||||||||||
Sbjct: 19 cggtggtggccgccgccgccg 39
>gb|CW048832.1|CW048832 104_287_10513656_114_30211 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513656, DNA
sequence
Length = 466
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 940 ggtggtggccgccgccgccgc 960
|||||||||||||||||||||
Sbjct: 135 ggtggtggccgccgccgccgc 155
>gb|CW157501.1|CW157501 104_560_11147267_116_36383_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11147267, DNA
sequence
Length = 589
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 940 ggtggtggccgccgccgccgc 960
|||||||||||||||||||||
Sbjct: 266 ggtggtggccgccgccgccgc 246
>gb|CW216619.1|CW216619 104_649_11195213_116_37125_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195213, DNA
sequence
Length = 507
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 940 ggtggtggccgccgccgccgc 960
|||||||||||||||||||||
Sbjct: 36 ggtggtggccgccgccgccgc 16
>gb|CW371734.1|CW371734 fsbb001f047f12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f047f12, DNA
sequence
Length = 618
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 939 cggtggtggccgccgccgccg 959
|||||||||||||||||||||
Sbjct: 314 cggtggtggccgccgccgccg 294
>gb|CF485646.1|CF485646 POL1_32_F06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_32_F06_A002 5', mRNA sequence
Length = 630
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 939 cggtggtggccgccgccgccg 959
|||||||||||||||||||||
Sbjct: 301 cggtggtggccgccgccgccg 281
>gb|CL167787.1|CL167787 104_365_10810332_116_31805_012 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810332, DNA
sequence
Length = 673
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 779 cggaggcgaggacgacggcg 798
||||||||||||||||||||
Sbjct: 552 cggaggcgaggacgacggcg 571
>gb|CW037421.1|CW037421 104_269_10504332_114_30383 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10504332, DNA
sequence
Length = 559
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 941 gtggtggccgccgccgccgc 960
||||||||||||||||||||
Sbjct: 481 gtggtggccgccgccgccgc 462
>gb|CW267416.1|CW267416 104_737_11400723_116_35289_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11400723, DNA
sequence
Length = 672
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 799 cggctcgagctcgcggcgcc 818
||||||||||||||||||||
Sbjct: 486 cggctcgagctcgcggcgcc 467
>gb|CW271366.1|CW271366 104_743_11402961_148_35344_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402961, DNA
sequence
Length = 681
Score = 40.1 bits (20), Expect = 0.40
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 771 gaagacgtcggaggcgaggacgacggcg 798
|||| ||||||||||| |||||||||||
Sbjct: 479 gaagtcgtcggaggcgcggacgacggcg 452
>gb|CW271525.1|CW271525 104_743_11403043_148_35342_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11403043, DNA
sequence
Length = 668
Score = 40.1 bits (20), Expect = 0.40
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 965 acggcggcgaggcagagcagaacc 988
||||||||||||||||| ||||||
Sbjct: 313 acggcggcgaggcagaggagaacc 290
>gb|CW308324.1|CW308324 104_796_11468606_116_35731_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468606, DNA
sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.40
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 965 acggcggcgaggcagagcagaacc 988
||||||||||||||||| ||||||
Sbjct: 227 acggcggcgaggcagaggagaacc 204
>gb|CW366472.1|CW366472 fsbb001f039h22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f039h22, DNA
sequence
Length = 668
Score = 40.1 bits (20), Expect = 0.40
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 771 gaagacgtcggaggcgaggacgacggcg 798
|||| ||||||||||| |||||||||||
Sbjct: 146 gaagtcgtcggaggcgcggacgacggcg 173
>gb|CW384247.1|CW384247 fsbb001f067d04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f067d04, DNA
sequence
Length = 467
Score = 40.1 bits (20), Expect = 0.40
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 965 acggcggcgaggcagagcagaacc 988
||||||||||||||||| ||||||
Sbjct: 324 acggcggcgaggcagaggagaacc 347
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 461,538
Number of Sequences: 832831
Number of extensions: 461538
Number of successful extensions: 173798
Number of sequences better than 0.5: 62
Number of HSP's better than 0.5 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 173633
Number of HSP's gapped (non-prelim): 165
length of query: 1053
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1033
effective length of database: 474,703,049
effective search space: 490368249617
effective search space used: 490368249617
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)