BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192420.2.1
(738 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF488144.1|CF488144 POL1_48_B12.b1_A002 Pollen Sorghum b... 765 0.0
gb|CD209409.1|CD209409 HS1_42_A06.b1_A012 Heat-shocked seed... 603 e-171
gb|BZ412852.1|BZ412852 117d8_ctg2 Subclones from BAC clones... 517 e-145
gb|CL180433.1|CL180433 104_390_10896013_116_31930_157 Sorgh... 517 e-145
gb|CL180434.1|CL180434 104_390_10896013_148_31929_157 Sorgh... 517 e-145
gb|BF421751.1|BF421751 FM1_16_B09.g1_A003 Floral-Induced Me... 476 e-132
gb|CD426164.1|CD426164 SA1_19_E05.b1_A002 Salicylic acid-tr... 396 e-108
gb|CW236997.1|CW236997 104_693_11215924_116_37513_012 Sorgh... 381 e-104
gb|CW387593.1|CW387593 fsbb001f072a02f0 Sorghum methylation... 353 1e-095
gb|CW105650.1|CW105650 104_475_11012989_116_34454_063 Sorgh... 246 2e-063
gb|BF481081.1|BF481081 FM1_16_B09.b1_A003 Floral-Induced Me... 240 2e-061
gb|CL162150.1|CL162150 104_354_10806209_114_31830_113 Sorgh... 149 4e-034
gb|CW236998.1|CW236998 104_693_11215924_148_37518_012 Sorgh... 149 4e-034
gb|CW387594.1|CW387594 fsbb001f072a02k0 Sorghum methylation... 149 4e-034
gb|CW064452.1|CW064452 104_310_10522578_115_30146 Sorghum m... 111 9e-023
gb|CL162151.1|CL162151 104_354_10806209_116_31831_113 Sorgh... 98 1e-018
gb|BZ629180.1|BZ629180 ih64f09.g1 WGS-SbicolorF (DH5a methy... 94 2e-017
gb|CW042027.1|CW042027 104_275_10506893_115_30285 Sorghum m... 90 3e-016
gb|CL152513.1|CL152513 104_336_10780017_116_31366_033 Sorgh... 44 0.018
>gb|CF488144.1|CF488144 POL1_48_B12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_48_B12_A002 3', mRNA sequence
Length = 703
Score = 765 bits (386), Expect = 0.0
Identities = 559/612 (91%), Gaps = 6/612 (0%)
Strand = Plus / Plus
Query: 9 aaaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgag 68
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 50 aaaaattgtaatggttctggctgctacgaattttccatgggatattgatgaggcactgag 109
Query: 69 gcgaaggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcact 128
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 gcggaggcttgagaagcgcatttatattccacttccagattttgaaagtagaaaggcact 169
Query: 129 tatcaacattaatcttagaacagttcagatagccgcagatgttaacatcgacgaggttgc 188
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct: 170 tatcaacattaatcttagaacagttcagatagctgcggatgttaacatcgatgaggttgc 229
Query: 189 tcggaggacagaaggctatagtggagatgatctgacaaacgtttgccgcgatgcctcaat 248
||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 230 tcggaggacagaaggctatagtggagatgatctgacaaatgtttgccgtgatgcttcaat 289
Query: 249 gaatggcatgaggcgcaagatagcaggcaagacccgcgacgagatcaagaacatgtcaaa 308
||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 290 gaacggtatgaggcgcaagatagcaggcaagacccgcgatgagatcaagaacatgtcaaa 349
Query: 309 ggacgagatagccaaggacccggtggccatgtgcgactttgtggaggctctggtgaaggt 368
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 350 ggacgagatagccaaggacccagtggccatgtgcgactttgtggaggccctggtgaaggt 409
Query: 369 tcagaagagtgtctcgccttcagacatagagaagcatgagaagtggatggctgagtttgg 428
|||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||
Sbjct: 410 ccagaagagtgtctcgcctgcagacatagaaaagcatgagaagtggatgactgagtttgg 469
Query: 429 gtctgcctgagacctcggccatctgcttgggtcctgttcaaacattcgttttgtgtgggt 488
||| |||||| ||||||| |||| ||| | || | ||| |||||| ||||||| |||
Sbjct: 470 gtccgcctgatacctcggtcatccccttagatcttcttc-aacatt--gtttgtgt-ggt 525
Query: 489 tgacacggcattccgtagcaatgatacggtgttacccgccggtggtcttgcttcatatag 548
|||||||| ||| ||||||||||||| | ||||| |||| |||||||||| | | ||||
Sbjct: 526 tgacacggtatttcgtagcaatgatatgctgttatccgctggtggtcttgttgc--atag 583
Query: 549 accagaggcacgagctatcttgtctgtttccagtgatgctaggaattgagttcacgatcg 608
||||||||||||| |||| |||||| ||| ||||||||||||||||| | ||||||||
Sbjct: 584 accagaggcacgaactatattgtctattttcagtgatgctaggaattaatttcacgatta 643
Query: 609 tttcagttcttg 620
||||| ||||||
Sbjct: 644 tttcaattcttg 655
>gb|CD209409.1|CD209409 HS1_42_A06.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_42_A06_A012 3', mRNA sequence
Length = 657
Score = 603 bits (304), Expect = e-171
Identities = 462/510 (90%), Gaps = 6/510 (1%)
Strand = Plus / Plus
Query: 97 ccacttccagattttgaaagtagaaaggcacttatcaacattaatcttagaacagttcag 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 ccacttccagattttgaaagtagaaaggcacttatcaacattaatcttagaacagttcag 208
Query: 157 atagccgcagatgttaacatcgacgaggttgctcggaggacagaaggctatagtggagat 216
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 209 atagctgcggatgttaacatcgatgaggttgctcggaggacagaaggctatagtggagat 268
Query: 217 gatctgacaaacgtttgccgcgatgcctcaatgaatggcatgaggcgcaagatagcaggc 276
||||||||||| |||||||| ||||| |||||||| || |||||||||||||||||||||
Sbjct: 269 gatctgacaaatgtttgccgtgatgcttcaatgaacggtatgaggcgcaagatagcaggc 328
Query: 277 aagacccgcgacgagatcaagaacatgtcaaaggacgagatagccaaggacccggtggcc 336
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 329 aagacccgcgatgagatcaagaacatgtcaaaggacgagatagccaaggacccagtggcc 388
Query: 337 atgtgcgactttgtggaggctctggtgaaggttcagaagagtgtctcgccttcagacata 396
| |||||||||||||||||| ||||||||||| ||||||| ||| |||||| ||||||||
Sbjct: 389 acgtgcgactttgtggaggccctggtgaaggtccagaagaatgtgtcgcctgcagacata 448
Query: 397 gagaagcatgagaagtggatggctgagtttgggtctgcctgagacctcggccatctgctt 456
|| |||||||||||||||||| ||||||||||||| |||||| ||||||| |||| |||
Sbjct: 449 gaaaagcatgagaagtggatgactgagtttgggtccgcctgatacctcggtcatcccctt 508
Query: 457 gggtcctgttcaaacattcgttttgtgtgggttgacacggcattccgtagcaatgatacg 516
| || | ||| |||||| ||||||| ||||||||||| ||| ||||||||||||| |
Sbjct: 509 agatcttcttc-aacatt--gtttgtgt-ggttgacacggtatttcgtagcaatgatatg 564
Query: 517 gtgttacccgccggtggtcttgcttcatatagaccagaggcacgagctatcttgtctgtt 576
||||| |||| |||||||||| | | ||||||||||||||||| |||| |||||| ||
Sbjct: 565 ctgttatccgctggtggtcttgttgc--atagaccagaggcacgaactatattgtctatt 622
Query: 577 tccagtgatgctaggaattgagttcacgat 606
| ||||||||||||||||| | ||||||||
Sbjct: 623 ttcagtgatgctaggaattaatttcacgat 652
>gb|BZ412852.1|BZ412852 117d8_ctg2 Subclones from BAC clones mapped to Sorghum bicolor
chromosome 3 Sorghum bicolor genomic clone 117d8, DNA
sequence
Length = 849
Score = 517 bits (261), Expect = e-145
Identities = 419/467 (89%), Gaps = 6/467 (1%)
Strand = Plus / Minus
Query: 154 cagatagccgcagatgttaacatcgacgaggttgctcggaggacagaaggctatagtgga 213
|||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 625 cagatagctgcggatgttaacatcgatgaggttgctcggaggacagaaggctatagtgga 566
Query: 214 gatgatctgacaaacgtttgccgcgatgcctcaatgaatggcatgaggcgcaagatagca 273
|||||||||||||| |||||||| ||||| |||||||| || ||||||||||||||||||
Sbjct: 565 gatgatctgacaaatgtttgccgtgatgcttcaatgaacggtatgaggcgcaagatagca 506
Query: 274 ggcaagacccgcgacgagatcaagaacatgtcaaaggacgagatagccaaggacccggtg 333
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 505 ggcaagacccgcgatgagatcaagaacatgtcaaaggacgagatagccaaggacccagtg 446
Query: 334 gccatgtgcgactttgtggaggctctggtgaaggttcagaagagtgtctcgccttcagac 393
||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||
Sbjct: 445 gccatgtgcgactttgtggaggccctggtgaaggtccagaagagtgtctcgcctgcagac 386
Query: 394 atagagaagcatgagaagtggatggctgagtttgggtctgcctgagacctcggccatctg 453
||||| |||||||||||||||||| ||||||||||||| |||||| ||||||| ||||
Sbjct: 385 atagaaaagcatgagaagtggatgactgagtttgggtccgcctgatacctcggtcatccc 326
Query: 454 cttgggtcctgttcaaacattcgttttgtgtgggttgacacggcattccgtagcaatgat 513
||| | || | ||| |||||| ||||||| ||||||||||| ||| ||||||||||||
Sbjct: 325 cttagatcttcttc-aacatt--gtttgtgt-ggttgacacggtatttcgtagcaatgat 270
Query: 514 acggtgttacccgccggtggtcttgcttcatatagaccagaggcacgagctatcttgtct 573
| | ||||| |||| |||||||||| | | ||||||||||||||||| |||| ||||||
Sbjct: 269 atgctgttatccgctggtggtcttgttgc--atagaccagaggcacgaactatattgtct 212
Query: 574 gtttccagtgatgctaggaattgagttcacgatcgtttcagttcttg 620
||| ||||||||||||||||| | |||||||| ||||| ||||||
Sbjct: 211 attttcagtgatgctaggaattaatttcacgattatttcaattcttg 165
>gb|CL180433.1|CL180433 104_390_10896013_116_31930_157 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896013, DNA
sequence
Length = 760
Score = 517 bits (261), Expect = e-145
Identities = 419/467 (89%), Gaps = 6/467 (1%)
Strand = Plus / Minus
Query: 154 cagatagccgcagatgttaacatcgacgaggttgctcggaggacagaaggctatagtgga 213
|||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 717 cagatagctgcggatgttaacatcgatgaggttgctcggaggacagaaggctatagtgga 658
Query: 214 gatgatctgacaaacgtttgccgcgatgcctcaatgaatggcatgaggcgcaagatagca 273
|||||||||||||| |||||||| ||||| |||||||| || ||||||||||||||||||
Sbjct: 657 gatgatctgacaaatgtttgccgtgatgcttcaatgaacggtatgaggcgcaagatagca 598
Query: 274 ggcaagacccgcgacgagatcaagaacatgtcaaaggacgagatagccaaggacccggtg 333
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 597 ggcaagacccgcgatgagatcaagaacatgtcaaaggacgagatagccaaggacccagtg 538
Query: 334 gccatgtgcgactttgtggaggctctggtgaaggttcagaagagtgtctcgccttcagac 393
||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||
Sbjct: 537 gccatgtgcgactttgtggaggccctggtgaaggtccagaagagtgtctcgcctgcagac 478
Query: 394 atagagaagcatgagaagtggatggctgagtttgggtctgcctgagacctcggccatctg 453
||||| |||||||||||||||||| ||||||||||||| |||||| ||||||| ||||
Sbjct: 477 atagaaaagcatgagaagtggatgactgagtttgggtccgcctgatacctcggtcatccc 418
Query: 454 cttgggtcctgttcaaacattcgttttgtgtgggttgacacggcattccgtagcaatgat 513
||| | || | ||| |||||| ||||||| ||||||||||| ||| ||||||||||||
Sbjct: 417 cttagatcttcttc-aacatt--gtttgtgt-ggttgacacggtatttcgtagcaatgat 362
Query: 514 acggtgttacccgccggtggtcttgcttcatatagaccagaggcacgagctatcttgtct 573
| | ||||| |||| |||||||||| | | ||||||||||||||||| |||| ||||||
Sbjct: 361 atgctgttatccgctggtggtcttgttgc--atagaccagaggcacgaactatattgtct 304
Query: 574 gtttccagtgatgctaggaattgagttcacgatcgtttcagttcttg 620
||| ||||||||||||||||| | |||||||| ||||| ||||||
Sbjct: 303 attttcagtgatgctaggaattaatttcacgattatttcaattcttg 257
>gb|CL180434.1|CL180434 104_390_10896013_148_31929_157 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896013, DNA
sequence
Length = 672
Score = 517 bits (261), Expect = e-145
Identities = 419/467 (89%), Gaps = 6/467 (1%)
Strand = Plus / Plus
Query: 154 cagatagccgcagatgttaacatcgacgaggttgctcggaggacagaaggctatagtgga 213
|||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 123 cagatagctgcggatgttaacatcgatgaggttgctcggaggacagaaggctatagtgga 182
Query: 214 gatgatctgacaaacgtttgccgcgatgcctcaatgaatggcatgaggcgcaagatagca 273
|||||||||||||| |||||||| ||||| |||||||| || ||||||||||||||||||
Sbjct: 183 gatgatctgacaaatgtttgccgtgatgcttcaatgaacggtatgaggcgcaagatagca 242
Query: 274 ggcaagacccgcgacgagatcaagaacatgtcaaaggacgagatagccaaggacccggtg 333
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 243 ggcaagacccgcgatgagatcaagaacatgtcaaaggacgagatagccaaggacccagtg 302
Query: 334 gccatgtgcgactttgtggaggctctggtgaaggttcagaagagtgtctcgccttcagac 393
||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||
Sbjct: 303 gccatgtgcgactttgtggaggccctggtgaaggtccagaagagtgtctcgcctgcagac 362
Query: 394 atagagaagcatgagaagtggatggctgagtttgggtctgcctgagacctcggccatctg 453
||||| |||||||||||||||||| ||||||||||||| |||||| ||||||| ||||
Sbjct: 363 atagaaaagcatgagaagtggatgactgagtttgggtccgcctgatacctcggtcatccc 422
Query: 454 cttgggtcctgttcaaacattcgttttgtgtgggttgacacggcattccgtagcaatgat 513
||| | || | ||| |||||| ||||||| ||||||||||| ||| ||||||||||||
Sbjct: 423 cttagatcttcttc-aacatt--gtttgtgt-ggttgacacggtatttcgtagcaatgat 478
Query: 514 acggtgttacccgccggtggtcttgcttcatatagaccagaggcacgagctatcttgtct 573
| | ||||| |||| |||||||||| | | ||||||||||||||||| |||| ||||||
Sbjct: 479 atgctgttatccgctggtggtcttgttgc--atagaccagaggcacgaactatattgtct 536
Query: 574 gtttccagtgatgctaggaattgagttcacgatcgtttcagttcttg 620
||| ||||||||||||||||| | |||||||| ||||| ||||||
Sbjct: 537 attttcagtgatgctaggaattaatttcacgattatttcaattcttg 583
>gb|BF421751.1|BF421751 FM1_16_B09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 408
Score = 476 bits (240), Expect = e-132
Identities = 374/414 (90%), Gaps = 6/414 (1%)
Strand = Plus / Plus
Query: 148 acagttcagatagccgcagatgttaacatcgacgaggttgctcggaggacagaaggctat 207
|||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 acagttcagatagctgcggatgttaacatcgatgaggttgctcggaggacagaaggctat 60
Query: 208 agtggagatgatctgacaaacgtttgccgcgatgcctcaatgaatggcatgaggcgcaag 267
|||||||||| ||||||||| |||||||| ||||| |||||||| || ||||||||||||
Sbjct: 61 agtggagatgttctgacaaatgtttgccgtgatgcttcaatgaacggtatgaggcgcaag 120
Query: 268 atagcaggcaagacccgcgacgagatcaagaacatgtcaaaggacgagatagccaaggac 327
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atagcaggcaagacccgcgatgagatcaagaacatgtcaaaggacgagatagccaaggac 180
Query: 328 ccggtggccatgtgcgactttgtggaggctctggtgaaggttcagaagagtgtctcgcct 387
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 181 ccagtggccatgtgcgactttgtggaggccctggtgaaggtccagaagagtgtctcgcct 240
Query: 388 tcagacatagagaagcatgagaagtggatggctgagtttgggtctgcctgagacctcggc 447
|||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 241 gcagacatagaacagcatgagaagtggatgactgagtttgggtccgcctgagacctcggt 300
Query: 448 catctgcttgggtcctgttcaaacattcgttttgtgtgggttgacacggcattccgtagc 507
|||| ||| | || | ||| |||||| ||||||| ||||||||||| ||| ||||||
Sbjct: 301 catccccttagatcttcttc-aacatt--gtttgtgt-ggttgacacggtatttcgtagc 356
Query: 508 aatgatacggtgttacccgccggtggtcttgcttcatatagaccagaggcacga 561
||||||| | ||||| |||| |||||||||| | | |||||||||||||||||
Sbjct: 357 aatgatatgctgttatccgctggtggtcttgttgc--atagaccagaggcacga 408
>gb|CD426164.1|CD426164 SA1_19_E05.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_19_E05_A002 3', mRNA sequence
Length = 687
Score = 396 bits (200), Expect = e-108
Identities = 346/390 (88%), Gaps = 6/390 (1%)
Strand = Plus / Plus
Query: 231 ttgccgcgatgcctcaatgaatggcatgaggcgcaagatagcaggcaagacccgcgacga 290
|||||| ||||| |||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct: 1 ttgccgtgatgcttcaatgaacggtatgaggcgcaagatagcaggcaagacccgcgatga 60
Query: 291 gatcaagaacatgtcaaaggacgagatagccaaggacccggtggccatgtgcgactttgt 350
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 61 gatcaagaacatgtcaaaggacgagatagccaaggacccagtggccatgtgcgactttgt 120
Query: 351 ggaggctctggtgaaggttcagaagagtgtctcgccttcagacatagagaagcatgagaa 410
|||||| ||||||||||| |||||||||||||||||| |||||||||| |||||||||||
Sbjct: 121 ggaggccctggtgaaggtccagaagagtgtctcgcctgcagacatagaaaagcatgagaa 180
Query: 411 gtggatggctgagtttgggtctgcctgagacctcggccatctgcttgggtcctgttcaaa 470
||||||| ||||||||||||| |||||| ||||||| |||| ||| | || | ||| ||
Sbjct: 181 gtggatgactgagtttgggtccgcctgatacctcggtcatccccttagatcttcttc-aa 239
Query: 471 cattcgttttgtgtgggttgacacggcattccgtagcaatgatacggtgttacccgccgg 530
|||| ||||||| ||||||||||| ||| ||||||||||||| | ||||| |||| ||
Sbjct: 240 catt--gtttgtgt-ggttgacacggtatttcgtagcaatgatatgctgttatccgctgg 296
Query: 531 tggtcttgcttcatatagaccagaggcacgagctatcttgtctgtttccagtgatgctag 590
|||||||| | | ||||||||||||||||| |||| |||||| ||| ||||||||||||
Sbjct: 297 tggtcttgttgc--atagaccagaggcacgaactatattgtctattttcagtgatgctag 354
Query: 591 gaattgagttcacgatcgtttcagttcttg 620
||||| | |||||||| ||||| ||||||
Sbjct: 355 gaattaatttcacgattatttcaattcttg 384
>gb|CW236997.1|CW236997 104_693_11215924_116_37513_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11215924, DNA
sequence
Length = 759
Score = 381 bits (192), Expect = e-104
Identities = 381/438 (86%), Gaps = 7/438 (1%)
Strand = Plus / Minus
Query: 166 gatgttaacatcgacgaggttgctcggaggacagaaggctatagtggagatgatctgaca 225
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gatgttaacatcgatgaggttgctcggaggacagaaggctatagtggagatgatctgaca 592
Query: 226 aacgtttgccgcgatgcctcaatgaatggcatgaggcgcaagatagcaggcaagacccgc 285
|| |||||||| ||||| |||||||| || |||||| ||||||||||||||||||||||
Sbjct: 591 aatgtttgccgtgatgcttcaatgaacggtatgaggtgcaagatagcaggcaagacccgt 532
Query: 286 gacgagatcaagaacatgtcaaaggacgagatagccaaggacccggtggccatgtgcgac 345
|| ||||||||||||||||||||| | | ||||||||||||||| ||| |||||||||||
Sbjct: 531 gaagagatcaagaacatgtcaaagaatgggatagccaaggacccagtgaccatgtgcgac 472
Query: 346 tttgtggaggctctggtgaaggttcagaagagtgtctcgccttcagacatagagaagcat 405
||||||||||| || ||||||| ||||||||||||||| || |||||||||| ||||||
Sbjct: 471 tttgtggaggccctcatgaaggtccagaagagtgtctcgtctgcagacatagaaaagcat 412
Query: 406 gagaagtggatggctgagtttgggtctgcctgagacctcggccatctgcttgggtcctgt 465
||||||||||| ||| ||||||||| ||||||||||| || |||| ||| || | |
Sbjct: 411 aagaagtggatgactgtgtttgggtccgcctgagaccttggtcatccccttatatcgtct 352
Query: 466 tcaaacattcgttttgtgtgggttgacacggcattccgtagcaatgatacggtgttaccc 525
|| |||||| ||||||| ||||||||||| ||| |||||||| ||| | ||||| ||
Sbjct: 351 tc-aacatt--gtttgtgt-ggttgacacggtatttggtagcaat-atatgttgttatcc 297
Query: 526 gccggtggtcttgcttcatatagaccagaggcacgagctatcttgtctgtttccagtgat 585
|| |||||||||| | | |||||||| |||||| | ||||||||||| ||| |||||||
Sbjct: 296 gctggtggtcttgttgc--atagaccaaaggcacaaactatcttgtctattttcagtgat 239
Query: 586 gctaggaattgagttcac 603
|||||||||| |||||||
Sbjct: 238 gctaggaattaagttcac 221
>gb|CW387593.1|CW387593 fsbb001f072a02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f072a02, DNA
sequence
Length = 665
Score = 353 bits (178), Expect = 1e-095
Identities = 253/278 (91%)
Strand = Plus / Minus
Query: 166 gatgttaacatcgacgaggttgctcggaggacagaaggctatagtggagatgatctgaca 225
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gatgttaacatcgatgaggttgctcggaggacagaaggctatagtggagatgatctgaca 294
Query: 226 aacgtttgccgcgatgcctcaatgaatggcatgaggcgcaagatagcaggcaagacccgc 285
|| |||||||| ||||| |||||||| || |||||| ||||||||||||||||||||||
Sbjct: 293 aatgtttgccgtgatgcttcaatgaacggtatgaggtgcaagatagcaggcaagacccgt 234
Query: 286 gacgagatcaagaacatgtcaaaggacgagatagccaaggacccggtggccatgtgcgac 345
|| ||||||||||||||||||||| | | ||||||||||||||| ||| |||||||||||
Sbjct: 233 gaagagatcaagaacatgtcaaagaatgggatagccaaggacccagtgaccatgtgcgac 174
Query: 346 tttgtggaggctctggtgaaggttcagaagagtgtctcgccttcagacatagagaagcat 405
||||||||||| || ||||||| ||||||||||||||| || |||||||||| ||||||
Sbjct: 173 tttgtggaggccctcatgaaggtccagaagagtgtctcgtctgcagacatagaaaagcat 114
Query: 406 gagaagtggatggctgagtttgggtctgcctgagacct 443
||||||||||| ||| ||||||||| |||||||||||
Sbjct: 113 aagaagtggatgactgtgtttgggtccgcctgagacct 76
>gb|CW105650.1|CW105650 104_475_11012989_116_34454_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11012989, DNA
sequence
Length = 318
Score = 246 bits (124), Expect = 2e-063
Identities = 252/290 (86%), Gaps = 6/290 (2%)
Strand = Plus / Plus
Query: 331 gtggccatgtgcgactttgtggaggctctggtgaaggttcagaagagtgtctcgccttca 390
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||
Sbjct: 4 gtggccatgtgcgactttgtggaggccctggtgaaggtccagaagagtgtctcgcctgca 63
Query: 391 gacatagagaagcatgagaagtggatggctgagtttgggtctgcctgagacctcggccat 450
|||||||| |||||||||||||||||| ||||||||||||| |||||| ||||||| |||
Sbjct: 64 gacatagaaaagcatgagaagtggatgactgagtttgggtccgcctgatacctcggtcat 123
Query: 451 ctgcttgggtcctgttcaaacattcgttttgtgtgggttgacacggcattccgtagcaat 510
| ||| | || | ||| |||||| ||||||| ||||||||||| ||| |||||||||
Sbjct: 124 ccccttagatcttcttc-aacatt--gtttgtgt-ggttgacacggtatttcgtagcaat 179
Query: 511 gatacggtgttacccgccggtggtcttgcttcatatagaccagaggcacgagctatcttg 570
|||| | ||||| |||| |||||||||| | | ||||||||||||||||| |||| |||
Sbjct: 180 gatatgctgttatccgctggtggtcttgttgc--atagaccagaggcacgaactatattg 237
Query: 571 tctgtttccagtgatgctaggaattgagttcacgatcgtttcagttcttg 620
||| ||| ||||||||||||||||| | |||||||| ||||| ||||||
Sbjct: 238 tctattttcagtgatgctaggaattaatttcacgattatttcaattcttg 287
>gb|BF481081.1|BF481081 FM1_16_B09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 536
Score = 240 bits (121), Expect = 2e-061
Identities = 136/141 (96%)
Strand = Plus / Plus
Query: 9 aaaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgag 68
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 396 aaaaattgtaatggttctggctgctacgaattttccatgggatattgatgaggcactgag 455
Query: 69 gcgaaggctggagaagcgtatttatattccacttccagattttgaaagtagaaaggcact 128
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gcggaggcttgagaagcgcatttatattccacttccagattttgaaagtagaaaggcact 515
Query: 129 tatcaacattaatcttagaac 149
|||||||||||||||||||||
Sbjct: 516 tatcaacattaatcttagaac 536
>gb|CL162150.1|CL162150 104_354_10806209_114_31830_113 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806209, DNA
sequence
Length = 598
Score = 149 bits (75), Expect = 4e-034
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 82 aagcgtatttatattccacttccagattttgaaagtagaaaggcacttatcaacattaat 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 aagcgtatttatattccacttccagattttgaaagtagaaaggcacttatcaacattaat 50
Query: 142 cttagaacagttcag 156
|||||||||||||||
Sbjct: 49 cttagaacagttcag 35
>gb|CW236998.1|CW236998 104_693_11215924_148_37518_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11215924, DNA
sequence
Length = 749
Score = 149 bits (75), Expect = 4e-034
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 82 aagcgtatttatattccacttccagattttgaaagtagaaaggcacttatcaacattaat 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 aagcgtatttatattccacttccagattttgaaagtagaaaggcacttatcaacattaat 203
Query: 142 cttagaacagttcag 156
|||||||||||||||
Sbjct: 204 cttagaacagttcag 218
Score = 139 bits (70), Expect = 4e-031
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 166 gatgttaacatcgacgaggttgctcggaggacagaaggctatagtggagatgatctgaca 225
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gatgttaacatcgatgaggttgctcggaggacagaaggctatagtggagatgatctgaca 715
Query: 226 aacgtttgccgcgatgcctcaatgaa 251
|| |||||||| ||||| ||||||||
Sbjct: 716 aatgtttgccgtgatgcttcaatgaa 741
>gb|CW387594.1|CW387594 fsbb001f072a02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f072a02, DNA
sequence
Length = 643
Score = 149 bits (75), Expect = 4e-034
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 82 aagcgtatttatattccacttccagattttgaaagtagaaaggcacttatcaacattaat 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagcgtatttatattccacttccagattttgaaagtagaaaggcacttatcaacattaat 504
Query: 142 cttagaacagttcag 156
|||||||||||||||
Sbjct: 505 cttagaacagttcag 519
>gb|CW064452.1|CW064452 104_310_10522578_115_30146 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10522578, DNA
sequence
Length = 570
Score = 111 bits (56), Expect = 9e-023
Identities = 116/135 (85%), Gaps = 2/135 (1%)
Strand = Plus / Plus
Query: 486 ggttgacacggcattccgtagcaatgatacggtgttacccgccggtggtcttgcttcata 545
||||||||||| ||| ||||||||||||| | ||||| |||| |||||||||| | ||||
Sbjct: 38 ggttgacacggtatttcgtagcaatgatatgctgttatccgctggtggtcttgttgcata 97
Query: 546 tagaccagaggcacgagctatcttgtctgtttccagtgatgctaggaattgagttcacga 605
|||||||||||||| |||| |||||| ||| ||||||||||||||||| | |||||||
Sbjct: 98 --gaccagaggcacgaactatattgtctattttcagtgatgctaggaattaatttcacga 155
Query: 606 tcgtttcagttcttg 620
| ||||| ||||||
Sbjct: 156 ttatttcaattcttg 170
>gb|CL162151.1|CL162151 104_354_10806209_116_31831_113 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806209, DNA
sequence
Length = 644
Score = 97.6 bits (49), Expect = 1e-018
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 9 aaaaattgttatggttctggctgctacaaattttccatgggatattgatgaggcactgag 68
||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 179 aaaaattgtaacggttctggctgctacgaattttccatgggatattgatgaggcactgag 238
Query: 69 g 69
|
Sbjct: 239 g 239
>gb|BZ629180.1|BZ629180 ih64f09.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih64f09 5', DNA sequence
Length = 540
Score = 93.7 bits (47), Expect = 2e-017
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 63 actgaggcgaaggctggagaagcgtatttatattccacttccagattttgaaagtagaaa 122
|||||||||||||||||| |||||||||||||||| |||||| ||||| ||||||||||
Sbjct: 104 actgaggcgaaggctggaaaagcgtatttatattctacttcctgatttcaaaagtagaaa 163
Query: 123 ggcacttatcaacattaat 141
|||||| |||| ||||||
Sbjct: 164 ggcactcgtcaatattaat 182
>gb|CW042027.1|CW042027 104_275_10506893_115_30285 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506893, DNA
sequence
Length = 646
Score = 89.7 bits (45), Expect = 3e-016
Identities = 99/116 (85%), Gaps = 2/116 (1%)
Strand = Plus / Plus
Query: 505 agcaatgatacggtgttacccgccggtggtcttgcttcatatagaccagaggcacgagct 564
|||||||||| | ||||| |||| |||||||||| | |||| |||||||||||||| ||
Sbjct: 1 agcaatgatatgctgttatccgctggtggtcttgttgcata--gaccagaggcacgaact 58
Query: 565 atcttgtctgtttccagtgatgctaggaattgagttcacgatcgtttcagttcttg 620
|| |||||| ||| ||||||||||||||||| | |||||||| ||||| ||||||
Sbjct: 59 atattgtctattttcagtgatgctaggaattaatttcacgattatttcaattcttg 114
>gb|CL152513.1|CL152513 104_336_10780017_116_31366_033 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780017, DNA
sequence
Length = 681
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 gagaagcgtatttatattccac 100
||||||||||||||||||||||
Sbjct: 155 gagaagcgtatttatattccac 176
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 162,958
Number of Sequences: 832831
Number of extensions: 162958
Number of successful extensions: 43922
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43866
Number of HSP's gapped (non-prelim): 46
length of query: 738
length of database: 491,359,669
effective HSP length: 20
effective length of query: 718
effective length of database: 474,703,049
effective search space: 340836789182
effective search space used: 340836789182
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)